BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029027
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 23/175 (13%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GSTA A++ +H+ V+N GDSR V+ + +A+PLS DHKP+R DE RIENAGG V+ W
Sbjct: 158 GSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQW 217
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK +V+ EPE+ + E L+LASDGLWDV+ N++
Sbjct: 218 QGA-RVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVC 276
Query: 150 ALAR---------TGEEP------------EIAARKLTETAFTRGSADNITCIVV 183
+AR G P + AA L+ A +GS DNI+ IV+
Sbjct: 277 EIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVI 331
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 23/175 (13%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GSTA A++ +H+ V+N GDSR V+ + +A+PLS DHKP+R DE RIENAGG V+ W
Sbjct: 155 GSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQW 214
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK +V+ EPE+ + E L+LASDGLWDV+ N++
Sbjct: 215 QGA-RVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVC 273
Query: 150 ALAR---------TGEEP------------EIAARKLTETAFTRGSADNITCIVV 183
+AR G P + AA L+ A +GS DNI+ IV+
Sbjct: 274 EIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVI 328
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 23/175 (13%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GSTA A++ +H+ V+N GDSR V+ + +A+PLS DHKP+R DE RIENAGG V+ W
Sbjct: 165 GSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQW 224
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK +V+ EPE+ + E L+LASDGLWDV+ N++
Sbjct: 225 QGA-RVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVC 283
Query: 150 ALAR---------TGEEP------------EIAARKLTETAFTRGSADNITCIVV 183
+AR G P + AA L+ A +GS DNI+ IV+
Sbjct: 284 EIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVI 338
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 23/175 (13%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GSTA A++ +H+ V+N GDSR V+ + +A+PLS DHKP+R DE RIENAGG V+ W
Sbjct: 156 GSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQW 215
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK +V+ EPE+ + E L+LASDGLWDV+ N++
Sbjct: 216 QGA-RVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVC 274
Query: 150 ALAR---------TGEEP------------EIAARKLTETAFTRGSADNITCIVV 183
+AR G P + AA L+ A +GS DNI+ IV+
Sbjct: 275 EIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVI 329
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 23/175 (13%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GSTA A++ +H+ V+N GDSR V+ + +A+PLS DHKP+R DE RIENAGG V+ W
Sbjct: 141 GSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQW 200
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK +V+ EPE+ + E L+LASDGLWDV+ N++
Sbjct: 201 QGA-RVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVC 259
Query: 150 ALAR---------TGEEP------------EIAARKLTETAFTRGSADNITCIVV 183
+AR G P + AA L+ A +GS DNI+ IV+
Sbjct: 260 EIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVI 314
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 23/175 (13%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GSTA A++ +H+ V+N GDSR V+ + +A+PLS DHKP+R DE RIENAGG V+ W
Sbjct: 152 GSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQW 211
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK +V+ EPE+ + E L+LASDGLWDV+ N++
Sbjct: 212 QGA-RVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVC 270
Query: 150 ALAR---------TGEEP------------EIAARKLTETAFTRGSADNITCIVV 183
+AR G P + AA L+ A +GS DNI+ IV+
Sbjct: 271 EIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVI 325
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 29/181 (16%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GST+ A++ +H++VAN GDSR V+ + A+PLS DHKP+R DE RIE AGG V+ W
Sbjct: 126 GSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQW 185
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK ++ +PE+ ++ + + L+LASDG+WDV+ +E+A
Sbjct: 186 NGA-RVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEAC 244
Query: 150 ALART-------------------------GEEPEI--AARKLTETAFTRGSADNITCIV 182
+AR G++P AA L++ A RGS DNI+ +V
Sbjct: 245 EMARKRILLWHKKNAVAGDASLLADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVV 304
Query: 183 V 183
V
Sbjct: 305 V 305
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 29/181 (16%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GST+ A++ +H++VAN GDSR V+ + A+PLS DHKP+R DE RIE AGG V+ W
Sbjct: 123 GSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQW 182
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK ++ +PE+ ++ + + L+LASDG+WDV+ +E+A
Sbjct: 183 NGA-RVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEAC 241
Query: 150 ALART-------------------------GEEPEI--AARKLTETAFTRGSADNITCIV 182
+AR G++P AA L++ A RGS DNI+ +V
Sbjct: 242 EMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVV 301
Query: 183 V 183
V
Sbjct: 302 V 302
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 29/181 (16%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GST+ A++ +H++VAN GDSR V+ + A+PLS DHKP+R DE RIE AGG V+ W
Sbjct: 138 GSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQW 197
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK ++ +PE+ ++ + + L+LASDG+WDV+ +E+A
Sbjct: 198 NGA-RVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEAC 256
Query: 150 ALART-------------------------GEEPEI--AARKLTETAFTRGSADNITCIV 182
+AR G++P AA L++ A RGS DNI+ +V
Sbjct: 257 EMARKRILLWHKKNAVAGDASLLADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVV 316
Query: 183 V 183
V
Sbjct: 317 V 317
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 28/180 (15%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMW 89
GST+ A++ H++VAN GDSR V+ + + LS DHKP+R DE RIE AGG V+ W
Sbjct: 132 GSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKVIRW 191
Query: 90 AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 149
G RV GVLAMSR+ G+R LK V+ +PE+ + + + L+LASDGLWDV+ NE+
Sbjct: 192 NGA-RVFGVLAMSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVC 250
Query: 150 ALART------------------------GEEPEI--AARKLTETAFTRGSADNITCIVV 183
LAR G++P AA L++ A +GS DNI+ +VV
Sbjct: 251 DLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVV 310
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 98/184 (53%), Gaps = 22/184 (11%)
Query: 22 SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIE 81
S+ + +D G TA A+L G LYVAN GDSR V+ + GKA+ +S DHKP E +RIE
Sbjct: 122 SDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGKALEMSFDHKPEDTVEYQRIE 181
Query: 82 NAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELL 132
AGG V G RV G L +SRA G+ K Q + A P+I+ + V E +
Sbjct: 182 KAGGRVTLDG--RVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITVGPEDEFM 239
Query: 133 VLASDGLWDVVPNEDAVALARTG-EEPEIAARKLTETAF-------TRG---SADNITCI 181
VLA DG+W+ + +E V + +P + K+ E F TRG DN+T I
Sbjct: 240 VLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHTRGDGTGCDNMTAI 299
Query: 182 VVRF 185
+V+F
Sbjct: 300 IVQF 303
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 23/184 (12%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWA 90
GSTA ++ H Y N GDSR ++ + K ++DHKP+ E++RI+NAGG VM
Sbjct: 126 GSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM-- 183
Query: 91 GTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLW 140
RV G LA+SRA G+ K Q V EPE+ D+E +E + ++LA DG+W
Sbjct: 184 -IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIW 242
Query: 141 DVVPNEDAVALART----GEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPE 196
DV+ NE+ R+ ++ E ++ +T +GS DN++ I++ F P P+
Sbjct: 243 DVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICF------PNAPK 296
Query: 197 VEQE 200
V E
Sbjct: 297 VSPE 300
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 23/184 (12%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWA 90
GSTA ++ H Y N GDSR ++ + K ++DHKP+ E++RI+NAGG VM
Sbjct: 126 GSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM-- 183
Query: 91 GTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLW 140
RV G LA+SRA G+ K Q V EPE+ D+E +E + ++LA DG+W
Sbjct: 184 -IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIW 242
Query: 141 DVVPNEDAVALART----GEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPE 196
DV+ NE+ R+ ++ E ++ +T +GS DN++ I++ F P P+
Sbjct: 243 DVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICF------PNAPK 296
Query: 197 VEQE 200
V E
Sbjct: 297 VSPE 300
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 31 GSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMW 89
G+TA+ A+L G L VA+VGDSR ++ + GK + L+ DH P R DE++RI+ GG V W
Sbjct: 216 GTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAW 275
Query: 90 --AGTWRVGGVLAMSRAFGNRMLK-QFVVAEPEIQDLEV---DEGFELLVLASDGLWDVV 143
G V G LAM+R+ G+ LK V+AEPE + +++ D+ F LVL +DG+ +V
Sbjct: 276 NSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSF--LVLTTDGINFMV 333
Query: 144 PNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 185
+++ +P AA +TE A G+ DN T +VV F
Sbjct: 334 NSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPF 375
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 9/167 (5%)
Query: 26 TYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAG 84
T G+TA+ A+L G L VA+VGDSR ++ + GK + L+ DH P R DE++RI+ G
Sbjct: 97 TLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCG 156
Query: 85 GVVMW--AGTWRVGGVLAMSRAFGNRMLK-QFVVAEPEIQDLEV---DEGFELLVLASDG 138
G V W G V G LAM+R+ G+ LK V+AEPE + +++ D+ F LVL +DG
Sbjct: 157 GFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSF--LVLTTDG 214
Query: 139 LWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 185
+ +V +++ +P AA +TE A G+ DN T +VV F
Sbjct: 215 INFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPF 261
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 16/168 (9%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWA 90
GSTA ++ H+Y N GDSR V+ + G+ ++DHKP E++RI+NAGG VM
Sbjct: 133 GSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVM-- 190
Query: 91 GTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWD 141
RV G LA+SRA G+ K Q V EPE+ ++ E E ++LA DG+WD
Sbjct: 191 -IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILAXDGIWD 249
Query: 142 VVPNEDAVALART----GEEPEIAARKLTETAFTRGSADNITCIVVRF 185
V+ NE+ ++ ++ E + +T +GS DN++ ++V F
Sbjct: 250 VMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSRDNMSIVLVCF 297
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 88/169 (52%), Gaps = 21/169 (12%)
Query: 38 ILVGNHLYVA-NVGDSR-TVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRV 95
I G+ L A N+GDSR T+I G LS+DHKPN E RIE AGG V RV
Sbjct: 168 IPAGSFLVTAINIGDSRATLIHSDGGLTRLSKDHKPNHPTEASRIEKAGGSVETFDVPRV 227
Query: 96 GGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGL------- 139
GVLA+SRAFG+ K Q V+A P+++ +LL+LA DG+
Sbjct: 228 DGVLALSRAFGDSDFKXNPNLPPEEQKVIAVPDVRQF-YALSSDLLLLACDGVYEPSGXD 286
Query: 140 WDVVPNEDAVALART-GEEPEIAARKLTETAFTRGSADNITCIVVRFHH 187
W V + R+ G+ E+AAR + + A+ S DNI+ +V FH+
Sbjct: 287 WAYVRDLTVAEXQRSKGDLEEVAAR-VXDYAYDXNSQDNISVXLVAFHN 334
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 7 AISETYQQTDVDFLESERDTYRDDGSTAS-TAILVGNHLYVANVGDSRTVISKAGKAIP- 64
A+ + Y+ D + ++ +D S+ S TA+L + V ++GDSR G P
Sbjct: 112 AVDDXYKNADNELVKXCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIA---XGVETPN 168
Query: 65 ------LSEDHKPNRCDERKRIENAGGVVMWAGT-----WRVGG-------------VLA 100
L+ DHKP+ E+ RI GG V + + GG L
Sbjct: 169 GLNCEFLTVDHKPDXPHEKLRIXRNGGSVEYLHNHNNKPFIRGGDFSFRKSRGEQPXQLQ 228
Query: 101 MSRAFGNRMLKQFVVA-EPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALA----RTG 155
SRAFG + LK + ++ +P+++ + V + +LA+DGLWDV AV +A + G
Sbjct: 229 YSRAFGGKDLKXYGLSNQPDVRVVRVTPQHRVXILATDGLWDVXSAAQAVEIAXQARQEG 288
Query: 156 EEP--EIAARKLTETAFTRGSADNITCIVVRF 185
P + L E SADNIT V F
Sbjct: 289 RNPAQALVEXTLAEQQSRNQSADNITAXTVFF 320
>pdb|3D8K|A Chain A, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|B Chain B, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|C Chain C, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|D Chain D, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
Length = 377
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 44 LYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWA-GTWRVGGVLAMS 102
++VA++G+SR V+ AI LS H + ER R++ AGGV G +GGV+ +
Sbjct: 168 IHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTVNGELLLGGVVPXT 227
Query: 103 RAFGNRMLKQ 112
RAFG+ K+
Sbjct: 228 RAFGSFDFKK 237
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 29/137 (21%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAG----KAIPLSEDHKPNRCDERKRIENAGGV 86
G+ A A+L+ N LYVANVG +R ++ K+ + L+ DH DE R+ G
Sbjct: 165 GAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLG-- 222
Query: 87 VMWAGTWRVGGVLA---MSRAFGNRMLK--------------QFVVAEPEI---QDLEVD 126
+ AG + G++ +R G+ +K + ++AEPEI Q L+
Sbjct: 223 -LDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGV 281
Query: 127 EGFELLVLASDGLWDVV 143
GF LVL S+GL+ +
Sbjct: 282 TGF--LVLMSEGLYKAL 296
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 47/165 (28%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVIS-----KAGKAIPLSEDHKPN--RCDERKRIEN- 82
G+TA A + G L+VAN GDSR ++ + A+ LS DH R ER ++E+
Sbjct: 200 GATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNEREVERLKLEHP 259
Query: 83 ---AGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------------------------- 111
A VV R+ G+L RAFG+ K
Sbjct: 260 KNEAKSVVKQD---RLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPP 316
Query: 112 -----QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVAL 151
++ AEPE+ + + LVLA+DGLW+ + +D V +
Sbjct: 317 NYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRI 361
>pdb|2POM|A Chain A, Tab1 With Manganese Ion
Length = 372
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 29/137 (21%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAG----KAIPLSEDHKPNRCDERKRIENAGGV 86
G+ A A+L+ N LYVANVG +R ++ K+ + L+ DH DE R+ G
Sbjct: 167 GAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLG-- 224
Query: 87 VMWAGTWRVGGVLA---MSRAFGNRMLK--------------QFVVAEPEI---QDLEVD 126
+ AG + G++ +R G+ +K + ++AEPEI Q L+
Sbjct: 225 -LDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGV 283
Query: 127 EGFELLVLASDGLWDVV 143
GF LVL S+GL+ +
Sbjct: 284 TGF--LVLMSEGLYKAL 298
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 47/165 (28%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVIS-----KAGKAIPLSEDHKPNRCDERKRIE---- 81
G+TA A + G L+VAN GDSR ++ + A+ LS DH E +R++
Sbjct: 200 GATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHP 259
Query: 82 --NAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------------------------- 111
A VV R+ G+L RAFG+ K
Sbjct: 260 KNEAKSVVKQD---RLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPP 316
Query: 112 -----QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVAL 151
++ AEPE+ + + LVLA+DGLW+ + +D V +
Sbjct: 317 NYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRI 361
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 29/137 (21%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAG----KAIPLSEDHKPNRCDERKRIENAGGV 86
G+ A A+L+ N LYVANVG +R ++ K+ + L+ DH DE R+ G
Sbjct: 148 GAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLG-- 205
Query: 87 VMWAGTWRVGGVLA---MSRAFGNRMLK--------------QFVVAEPEI---QDLEVD 126
+ AG + G++ +R G+ +K + ++AEPEI Q L+
Sbjct: 206 -LDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGV 264
Query: 127 EGFELLVLASDGLWDVV 143
GF LVL S+GL+ +
Sbjct: 265 TGF--LVLMSEGLYKAL 279
>pdb|2PK0|A Chain A, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|B Chain B, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|C Chain C, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|D Chain D, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
Length = 250
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 23 ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDH-------KPNRCD 75
+ D Y+ G+T +VG+++ A+VGDSR I + G+ L+ DH K +
Sbjct: 95 QSDDYKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVKAGQLT 154
Query: 76 ERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEV---DEGFELL 132
E + A S N + + A P DL V +EG + L
Sbjct: 155 EEE---------------------AASHPQKNIITQSIGQANPVEPDLGVHLLEEG-DYL 192
Query: 133 VLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 183
V+ SDGL +++ N D + + + + L A RG DNIT +V
Sbjct: 193 VVNSDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANHRGGLDNITVALV 243
>pdb|2IRM|A Chain A, Crystal Structure Of Mitogen-Activated Protein Kinase
Kinase Kinase 7 Interacting Protein 1 From Anopheles
Gambiae
Length = 358
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGK-----AIPLSEDHKPNRCDERKRI----- 80
GS+A A++ +HLY+ N+G+ R ++ K + LS DH +E R+
Sbjct: 154 GSSAVLALIHRSHLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEEAARLFRLGL 213
Query: 81 --ENAGGVVMWAGTWRVGGVLAMSRA----FGNRMLKQFVVAEPEI-QDLEVDEGFELLV 133
+N GV +++ T +G L + F + + V+ EPEI +++ LV
Sbjct: 214 MAQNFEGVPLYS-TRCIGNYLGKAGYKDCNFLSSATAEPVIFEPEIVGGIQITPACRFLV 272
Query: 134 LASDGLW----DVVPNEDAVALARTG--EEPEIAARKLTETAFTRGSADNITCIVVRFHH 187
L S GL ++ P + A TG E + + + + G A ++ +V+ HH
Sbjct: 273 LMSSGLCRALHEIFPGD-----ASTGNRELVRMISEEFQNQSTLGGVAQSVVHRIVQAHH 327
>pdb|2JFR|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Phosphate At
0.83 A Resolution
pdb|2JFS|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Cacodylate
pdb|2JFT|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Sulfate
pdb|2V06|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis At Ph 5.5
Length = 234
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 20/179 (11%)
Query: 10 ETYQQTDVDFLESERDTYRDDGSTASTAILV-----GNHLYVANVGDSRTVISKAGKAIP 64
E QQ ++ E D G+T TA+ V G L V N+GDS + G
Sbjct: 68 EAVQQANLRVFELLGDEPTVSGTTL-TAVAVFEPGQGGPLVV-NIGDSPLYRIRDGHMEQ 125
Query: 65 LSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLE 124
L++DH + E R+ G + W R R L P++ ++
Sbjct: 126 LTDDH--SVAGELVRM---GEITRHEARWH------PQRHLLTRALGIGPHIGPDVFGID 174
Query: 125 VDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 183
G LL+ +SDGL+ +E + A T +P++A R+L E A G +DN T +V+
Sbjct: 175 CGPGDRLLI-SSDGLF-AAADEALIVDAATSPDPQVAVRRLVEVANDAGGSDNTTVVVI 231
>pdb|1TXO|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A.
pdb|1TXO|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A
Length = 237
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 24/162 (14%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWA 90
G+T + + GN L + ++GDSR + + G+ +++D V
Sbjct: 95 GTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDT--------------FVQTLV 140
Query: 91 GTWRVGGVLAMS---RAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 147
R+ A S R+ R L V EP + E G L L SDGL D V +E
Sbjct: 141 DEGRITPEEAHSHPQRSLIXRALTGHEV-EPTLTXREARAGDRYL-LCSDGLSDPVSDE- 197
Query: 148 AVALARTGEEPEIA--ARKLTETAFTRGSADNITCIVVRFHH 187
+ + PE+A A +L E A G DN+T +V H
Sbjct: 198 --TILEALQIPEVAESAHRLIELALRGGGPDNVTVVVADLEH 237
>pdb|3BV6|A Chain A, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|B Chain B, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|C Chain C, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|D Chain D, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|E Chain E, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|F Chain F, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
Length = 379
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 149 VALARTGEEPEIAARKLTETAFTRGSADNITC-IVVRFHH-----VNEDPAEPEV 197
VAL GE P K+T + R +A+++ C +VV FHH DP E EV
Sbjct: 269 VALLSYGENPRGVTDKMTSSDVLR-AAESLDCQVVVPFHHDIWANFQNDPREIEV 322
>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
From Thermosynechococcus Elongatus
pdb|2J86|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
Of Thermosynechococcus Elongatus
pdb|2J86|B Chain B, Structural Analysis Of The Pp2c Family Phosphatase Tppha
Of Thermosynechococcus Elongatus
Length = 240
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 22/169 (13%)
Query: 21 ESERDTYRDDGSTASTAILV---GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDER 77
+ +++ R D T + IL+ G+ + A+VGDSR + + ++ DH
Sbjct: 86 QQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWI----- 140
Query: 78 KRIENAGGVVMWAGT---WRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVL 134
+ G + + WR +S+ G L Q +IQ ++++ G LL L
Sbjct: 141 AQAVQLGSLTIEQARQHPWR----HVLSQCLGREDLSQI-----DIQPIDLEPGDRLL-L 190
Query: 135 ASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 183
SDGL + + +D +++ + + AA L + A T G DN+T +V+
Sbjct: 191 CSDGLTEEL-TDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVI 238
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography. V93q Polymerase Variant
Length = 773
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 111 KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEE 157
+Q++ E I+++E GF++L +DG + +P DA + + +E
Sbjct: 518 RQYI--ETTIREIEEKFGFKVLYADTDGFFATIPGADAETVKKKAKE 562
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 111 KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEE 157
+Q++ E I+++E GF++L +DG + +P DA + + +E
Sbjct: 518 RQYI--ETTIREIEEKFGFKVLYADTDGFFATIPGADAETVKKKAKE 562
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 28.1 bits (61), Expect = 3.5, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 111 KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEE 157
+Q++ E I+++E GF++L +DG + +P DA + + +E
Sbjct: 518 RQYI--ETTIREIEEKFGFKVLYADTDGFFATIPGADAETVKKKAKE 562
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
Gorgonarius In Complex With Hypoxanthine-Containing Dna
Length = 773
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 111 KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEE 157
+Q++ E I+++E GF++L +DG + +P DA + + +E
Sbjct: 518 RQYI--ETTIREIEEKFGFKVLYADTDGFFATIPGADAETVKKKAKE 562
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 120 IQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEE 157
I++LE GF++L +DGL +P DA + + +E
Sbjct: 525 IRELEEKFGFKVLYADTDGLHATIPGADAETVKKKAKE 562
>pdb|2CM1|A Chain A, Crystal Structure Of The Catalytic Domain Of Serine
Threonine Protein Phosphatase Pstp In Complex With 2
Manganese Ions
Length = 260
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 31 GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSED 68
G+T + + GN L + ++GDSR + + G+ +++D
Sbjct: 118 GTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKD 155
>pdb|2Y09|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
Three Metals In The Catalytic Center For Efficient
Catalysis
Length = 240
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 21 ESERDTYRDDGSTASTAILV---GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDER 77
+ +++ R D T + IL+ G+ + A+VG SR + + ++ DH
Sbjct: 86 QQRQNSARADMGTTAVVILLDEKGDRAWCAHVGASRIYRWRKDQLQQITSDHTWI----- 140
Query: 78 KRIENAGGVVMWAGT---WRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVL 134
+ G + + WR +S+ G L Q +IQ ++++ G LL L
Sbjct: 141 AQAVQLGSLTIEQARQHPWR----HVLSQCLGREDLSQI-----DIQPIDLEPGDRLL-L 190
Query: 135 ASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 183
SDGL + + +D +++ + + AA L + A T G DN+T +V+
Sbjct: 191 CSDGLTEEL-TDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVI 238
>pdb|2XZV|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
Three Metals In The Catalytic Center For Efficient
Catalysis
Length = 240
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 21 ESERDTYRDDGSTASTAILV---GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDER 77
+ +++ R D T + IL+ G+ + A+VGDSR + + ++ DH
Sbjct: 86 QQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWI----- 140
Query: 78 KRIENAGGVVMWAGT---WRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVL 134
+ G + + WR +S+ G L Q +IQ ++++ G LL L
Sbjct: 141 AQAVQLGSLTIEQARQHPWR----HVLSQCLGREDLSQI-----DIQPIDLEPGDRLL-L 190
Query: 135 ASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 183
S GL + + +D +++ + + AA L + A T G DN+T +V+
Sbjct: 191 CSAGLTEEL-TDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVI 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,987,143
Number of Sequences: 62578
Number of extensions: 230157
Number of successful extensions: 438
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 44
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)