Query 029027
Match_columns 200
No_of_seqs 196 out of 1281
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 2.1E-42 4.6E-47 285.7 22.4 187 2-191 137-335 (365)
2 COG0631 PTC1 Serine/threonine 100.0 5.4E-39 1.2E-43 256.0 15.4 174 4-189 80-255 (262)
3 PTZ00224 protein phosphatase 2 100.0 4.8E-38 1E-42 260.7 21.5 177 5-189 83-274 (381)
4 PF00481 PP2C: Protein phospha 100.0 6E-39 1.3E-43 255.4 12.6 174 3-178 70-254 (254)
5 KOG0698 Serine/threonine prote 100.0 4.2E-37 9E-42 252.6 22.8 189 3-192 113-310 (330)
6 KOG0697 Protein phosphatase 1B 100.0 1.4E-37 3E-42 240.2 17.6 186 2-190 95-295 (379)
7 cd00143 PP2Cc Serine/threonine 100.0 2.6E-34 5.7E-39 227.5 21.7 180 2-185 69-254 (254)
8 PRK14559 putative protein seri 100.0 1.5E-34 3.1E-39 252.2 19.2 175 5-190 455-639 (645)
9 smart00332 PP2Cc Serine/threon 100.0 6.6E-34 1.4E-38 225.7 20.7 177 3-183 73-255 (255)
10 KOG0699 Serine/threonine prote 100.0 2.8E-32 6.1E-37 217.7 14.9 162 25-188 325-505 (542)
11 KOG0700 Protein phosphatase 2C 100.0 9.1E-30 2E-34 206.6 14.8 172 3-174 168-379 (390)
12 KOG1323 Serine/threonine phosp 99.9 1.5E-23 3.3E-28 166.3 16.4 182 5-188 221-489 (493)
13 KOG1379 Serine/threonine prote 99.9 3.9E-20 8.5E-25 146.3 15.8 156 2-185 145-330 (330)
14 KOG0618 Serine/threonine phosp 99.8 1.3E-19 2.8E-24 160.0 12.2 179 6-190 589-776 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.7 2.3E-15 5E-20 114.8 14.6 122 8-170 66-192 (193)
16 TIGR02865 spore_II_E stage II 99.6 5.4E-14 1.2E-18 126.9 16.6 135 9-185 617-763 (764)
17 PF13672 PP2C_2: Protein phosp 99.6 1.1E-14 2.3E-19 112.7 8.2 101 24-154 91-193 (212)
18 PF07228 SpoIIE: Stage II spor 99.5 1E-12 2.3E-17 100.0 17.0 137 8-185 40-192 (193)
19 COG2208 RsbU Serine phosphatas 98.6 3E-06 6.5E-11 71.1 15.8 135 10-186 214-366 (367)
20 COG2168 DsrH Uncharacterized c 69.1 2.7 5.9E-05 28.2 1.1 52 124-179 21-72 (96)
21 PF09436 DUF2016: Domain of un 61.8 7.2 0.00016 24.7 2.0 23 129-151 27-49 (72)
22 PF06972 DUF1296: Protein of u 56.7 19 0.00042 21.8 3.1 25 143-167 19-44 (60)
23 COG3700 AphA Acid phosphatase 54.1 29 0.00063 26.4 4.4 45 129-173 71-130 (237)
24 PF01436 NHL: NHL repeat; Int 50.8 31 0.00068 17.1 3.4 21 37-57 8-28 (28)
25 PF05785 CNF1: Rho-activating 46.3 27 0.00059 28.2 3.4 23 29-52 131-153 (281)
26 PF05926 Phage_GPL: Phage head 38.6 66 0.0014 23.2 4.2 22 133-154 1-22 (140)
27 PRK03982 heat shock protein Ht 34.8 40 0.00086 27.3 2.8 36 118-154 96-131 (288)
28 COG3315 O-Methyltransferase in 33.7 20 0.00043 29.4 0.9 90 51-154 104-194 (297)
29 PF04077 DsrH: DsrH like prote 32.9 13 0.00028 24.4 -0.2 25 129-153 19-43 (88)
30 PRK02391 heat shock protein Ht 32.8 36 0.00077 27.8 2.3 36 118-154 104-139 (296)
31 PRK05457 heat shock protein Ht 32.5 45 0.00098 27.0 2.8 36 118-154 105-140 (284)
32 cd08325 CARD_CASP1-like Caspas 32.0 1.2E+02 0.0026 19.6 4.2 33 142-174 30-62 (83)
33 COG1586 SpeD S-adenosylmethion 30.3 30 0.00066 24.8 1.3 38 3-40 35-72 (136)
34 PRK03072 heat shock protein Ht 29.4 44 0.00095 27.1 2.3 25 130-154 109-133 (288)
35 TIGR03735 PRTRC_A PRTRC system 27.3 48 0.001 25.3 2.0 44 129-172 26-90 (192)
36 PRK04897 heat shock protein Ht 25.5 60 0.0013 26.5 2.4 36 118-154 108-143 (298)
37 PRK10693 response regulator of 25.4 3E+02 0.0065 22.3 6.5 51 8-62 207-259 (303)
38 PF13876 Phage_gp49_66: Phage 24.2 94 0.002 20.2 2.6 23 30-55 22-46 (81)
39 KOG2943 Predicted glyoxalase [ 23.5 89 0.0019 24.9 2.8 47 6-52 224-271 (299)
40 PF07533 BRK: BRK domain; Int 23.4 1.6E+02 0.0034 16.8 3.2 37 49-85 3-39 (46)
41 PF07335 Glyco_hydro_75: Funga 22.8 1.2E+02 0.0025 22.4 3.2 17 36-52 69-85 (156)
42 PRK01345 heat shock protein Ht 22.7 77 0.0017 26.2 2.6 25 130-154 106-130 (317)
43 PF14014 DUF4230: Protein of u 22.7 2.9E+02 0.0063 19.7 6.0 40 115-154 75-114 (157)
44 PRK15324 type III secretion sy 22.6 1.6E+02 0.0034 23.6 4.1 25 164-188 169-193 (252)
45 TIGR02276 beta_rpt_yvtn 40-res 22.4 1.3E+02 0.0029 15.6 3.3 19 41-59 3-21 (42)
46 cd03703 aeIF5B_II aeIF5B_II: T 22.1 1.9E+02 0.0041 20.0 3.9 43 27-73 11-57 (110)
47 PF13649 Methyltransf_25: Meth 21.5 1.1E+02 0.0024 19.9 2.8 24 131-154 69-92 (101)
48 PF09350 DUF1992: Domain of un 21.3 74 0.0016 20.0 1.7 18 162-179 2-19 (71)
49 COG0501 HtpX Zn-dependent prot 21.3 68 0.0015 25.7 2.0 25 130-154 139-163 (302)
50 PRK02870 heat shock protein Ht 21.1 87 0.0019 26.2 2.6 25 130-154 155-179 (336)
51 PRK03001 M48 family peptidase; 21.0 85 0.0018 25.3 2.4 25 130-154 106-130 (283)
52 COG4632 EpsL Exopolysaccharide 21.0 4.6E+02 0.0099 21.4 6.3 99 34-142 154-260 (320)
53 TIGR03330 SAM_DCase_Bsu S-aden 20.8 24 0.00051 24.4 -0.7 35 3-37 24-58 (112)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.1e-42 Score=285.70 Aligned_cols=187 Identities=37% Similarity=0.596 Sum_probs=163.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhhh-cCCCCCCCceEEEEEEECCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHHH
Q 029027 2 TDTKLAISETYQQTDVDFLESE-RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRI 80 (200)
Q Consensus 2 ~~~~~~l~~a~~~~n~~i~~~~-~~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~i 80 (200)
.+++++|.++|..+|+.+.+.. ......||||++++++.++++|++||||||+|++|+|++.+||+||++.++.|++||
T Consensus 137 ~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI 216 (365)
T PLN03145 137 REIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRI 216 (365)
T ss_pred hhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHH
Confidence 3577889999999999987763 233445999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEeCCceeeeceeecccccCCccccc-------ccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHH-
Q 029027 81 ENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQ-------FVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALA- 152 (200)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~-------~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~- 152 (200)
.+.||.+.. .++++.+.+||+||+..+|. .++++|++..+++.++++|||||||||||+++++++.+++
T Consensus 217 ~~~Gg~v~~---g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~ 293 (365)
T PLN03145 217 EASGGYVYD---GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFAR 293 (365)
T ss_pred HHcCCceec---ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHH
Confidence 999998853 36677788999999977652 3678999999999998778889999999999999986555
Q ss_pred ---HcCCCHHHHHHHHHHHHHhcCCCCceEEEEEEccCCCCC
Q 029027 153 ---RTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNED 191 (200)
Q Consensus 153 ---~~~~~~~~~a~~l~~~a~~~g~~DN~T~ivi~~~~~~~~ 191 (200)
....+++++|+.|++.|+.+|+.||+|+|||+|...++.
T Consensus 294 ~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~~ 335 (365)
T PLN03145 294 RRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPPP 335 (365)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCCc
Confidence 345689999999999999999999999999999985443
No 2
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-39 Score=255.98 Aligned_cols=174 Identities=34% Similarity=0.535 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh--cCCCCCCCceEEEEEEECCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHHHH
Q 029027 4 TKLAISETYQQTDVDFLESE--RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIE 81 (200)
Q Consensus 4 ~~~~l~~a~~~~n~~i~~~~--~~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~i~ 81 (200)
+.++|.+++..+|..|.... .....+||||++++++.+++++++||||||+|++|+|++.|+|.||++.+..+++++.
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~ 159 (262)
T COG0631 80 LEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGII 159 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCC
Confidence 57999999999999999884 3567889999999999999999999999999999999999999999999988877766
Q ss_pred HhCCeEEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHcCCCHHHH
Q 029027 82 NAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIA 161 (200)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~~~~~~~~ 161 (200)
..++.... +..+.+||+||+.. ...|++..+.+.++ |+||||||||||.++++++.++++...+++++
T Consensus 160 ~~~~~~~~------~~~~~ltralG~~~-----~~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~ 227 (262)
T COG0631 160 TPEEARSH------PRRNALTRALGDFD-----LLEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEA 227 (262)
T ss_pred CHHHHHhC------ccchhhhhhcCCCc-----ccceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHH
Confidence 65554443 34448999999986 37999999999998 99999999999999999999999988899999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEEccCCC
Q 029027 162 ARKLTETAFTRGSADNITCIVVRFHHVN 189 (200)
Q Consensus 162 a~~l~~~a~~~g~~DN~T~ivi~~~~~~ 189 (200)
++.|++.|+++|+.||+|++++++....
T Consensus 228 ~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 228 ADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred HHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 9999999999999999999999998776
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=4.8e-38 Score=260.75 Aligned_cols=177 Identities=37% Similarity=0.663 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEEE-CCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHHHHHh
Q 029027 5 KLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENA 83 (200)
Q Consensus 5 ~~~l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~-~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~i~~~ 83 (200)
.+.|.+++..+|+.+.+... .+|||++++++. +.+++++||||||+|++|+|++.+||+||++.++.|++||.+.
T Consensus 83 ~~~l~~a~~~~d~~i~~~~~----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~ 158 (381)
T PTZ00224 83 DERMEELCLEIDEEWMDSGR----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEAC 158 (381)
T ss_pred HHHHHHHHHHHHHHHHhccc----CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHc
Confidence 34688999999999975432 359999998886 6799999999999999999999999999999999999999999
Q ss_pred CCeEEeCCceeeeceeecccccCCccccc---------ccccCCceeEEEeecCceEEEEEcCCCcC-CCChHHHHHHHH
Q 029027 84 GGVVMWAGTWRVGGVLAMSRAFGNRMLKQ---------FVVAEPEIQDLEVDEGFELLVLASDGLWD-VVPNEDAVALAR 153 (200)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~tr~lG~~~~~~---------~~~~~p~~~~~~l~~~~d~liL~SDGv~d-~l~~~~i~~i~~ 153 (200)
+|.+. .+|..+.+.+||+||+..+|. .+.++|++..+.+.++ |+|||||||||| +++++++.+++.
T Consensus 159 gg~v~---~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~-D~llLaSDGL~d~~ls~eEi~~iv~ 234 (381)
T PTZ00224 159 GGRVV---SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSN-DFIILACDGVFEGNFSNEEVVAFVK 234 (381)
T ss_pred cCEec---cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCC-CEEEEECCCcCcCccCHHHHHHHHH
Confidence 99875 346777889999999976542 3557899999999987 899999999999 899999999986
Q ss_pred c----CCCHHHHHHHHHHHHHhcCCCCceEEEEEEccCCC
Q 029027 154 T----GEEPEIAARKLTETAFTRGSADNITCIVVRFHHVN 189 (200)
Q Consensus 154 ~----~~~~~~~a~~l~~~a~~~g~~DN~T~ivi~~~~~~ 189 (200)
+ ..+++.+|+.|++.|+.+|+.||+|||||++...+
T Consensus 235 ~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 235 EQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 3 46899999999999999999999999999997654
No 4
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=6e-39 Score=255.36 Aligned_cols=174 Identities=48% Similarity=0.722 Sum_probs=148.5
Q ss_pred cHHHHHHHHHHH-HHHHHHhhhcC-CCCCCCceEEEEEEECCEEEEEEecCccEEEEeCCcee-eCCCCCCCCChhHHHH
Q 029027 3 DTKLAISETYQQ-TDVDFLESERD-TYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAI-PLSEDHKPNRCDERKR 79 (200)
Q Consensus 3 ~~~~~l~~a~~~-~n~~i~~~~~~-~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g~~~-~lt~dh~~~~~~e~~~ 79 (200)
++.++|..+|.. ++..+...... ....+|||++++++.++++|++||||||+|+++++... +||+||++.++.|++|
T Consensus 70 ~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~R 149 (254)
T PF00481_consen 70 DIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERER 149 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHH
T ss_pred chhhcccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccce
Confidence 478899999999 88888774211 55669999999999999999999999999999999888 9999999999999999
Q ss_pred HHHhCCeEEeCCceeeeceeecccccCCccccc----ccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHcC
Q 029027 80 IENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQ----FVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTG 155 (200)
Q Consensus 80 i~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~----~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~~ 155 (200)
|.+.||.+.. ..|+.+.+.+||+||+..+|+ .++++|++..+++.+++.|||||||||||+++++++.+++.+.
T Consensus 150 I~~~gg~v~~--~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~ 227 (254)
T PF00481_consen 150 IRKAGGRVSE--NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRES 227 (254)
T ss_dssp HHHTT-GEEE--TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHH
T ss_pred eecccccccc--chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHH
Confidence 9999999987 778888899999999999998 7999999999999999669999999999999999999999874
Q ss_pred CC----HHHHHHHHHHHHHhcCCCCce
Q 029027 156 EE----PEIAARKLTETAFTRGSADNI 178 (200)
Q Consensus 156 ~~----~~~~a~~l~~~a~~~g~~DN~ 178 (200)
.+ |+.+|+.|++.|+++|+.|||
T Consensus 228 ~~~~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 228 LNSGRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 33 899999999999999999996
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-37 Score=252.59 Aligned_cols=189 Identities=53% Similarity=0.808 Sum_probs=170.6
Q ss_pred cHHHHHHHHHH-HHHHHHHhhhcCCCCCCCceEEEEEEECC-EEEEEEecCccEEEEeCC-ceeeCCCCCCCCChhHHHH
Q 029027 3 DTKLAISETYQ-QTDVDFLESERDTYRDDGSTASTAILVGN-HLYVANVGDSRTVISKAG-KAIPLSEDHKPNRCDERKR 79 (200)
Q Consensus 3 ~~~~~l~~a~~-~~n~~i~~~~~~~~~~~gtT~~~~~i~~~-~~~~~~vGDSr~y~~r~g-~~~~lt~dh~~~~~~e~~~ 79 (200)
..++++.++|. .++..+... ......+|||++++++.++ ++|++|+||||+++.+.| ...+||.||.|..+.|+.|
T Consensus 113 ~~~~a~~~~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~R 191 (330)
T KOG0698|consen 113 DVKDALRRAFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERER 191 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHH
Confidence 47899999999 699999876 3334567888888888855 999999999999999866 7999999999999999999
Q ss_pred HHHhCCeEEeCC-ceeeeceeecccccCCcccc-cccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHc---
Q 029027 80 IENAGGVVMWAG-TWRVGGVLAMSRAFGNRMLK-QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART--- 154 (200)
Q Consensus 80 i~~~~g~~~~~~-~~~~~~~~~~tr~lG~~~~~-~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~--- 154 (200)
|.+.||.+.... ..|.++.++++|+|||..+| +.++++|++....+...++||||+||||||.++.+++.++++.
T Consensus 192 I~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~ 271 (330)
T KOG0698|consen 192 IEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELA 271 (330)
T ss_pred HHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhh
Confidence 999999998644 58999999999999999999 8899999999999999889999999999999999999999988
Q ss_pred -CCCHHHHHHHHHHHHHhcCCCCceEEEEEEccCCCCCC
Q 029027 155 -GEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDP 192 (200)
Q Consensus 155 -~~~~~~~a~~l~~~a~~~g~~DN~T~ivi~~~~~~~~~ 192 (200)
...+..++..|...|..+++.||+|||||.|......+
T Consensus 272 ~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~~~ 310 (330)
T KOG0698|consen 272 SISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPKSP 310 (330)
T ss_pred ccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccccc
Confidence 56899999999999999999999999999999876543
No 6
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-37 Score=240.18 Aligned_cols=186 Identities=34% Similarity=0.547 Sum_probs=168.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhh--hcCCCCCCCceEEEEEEECCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHH
Q 029027 2 TDTKLAISETYQQTDVDFLES--ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKR 79 (200)
Q Consensus 2 ~~~~~~l~~a~~~~n~~i~~~--~~~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~ 79 (200)
++.++-|+..|...+..+... ......++|||++++++...++|++|+||||++++|+|+...-|+||.|..+.|++|
T Consensus 95 ~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeR 174 (379)
T KOG0697|consen 95 ENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKER 174 (379)
T ss_pred HHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHH
Confidence 356778899999999887665 222334589999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEeCCceeeeceeecccccCCcccc---------cccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHH
Q 029027 80 IENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVA 150 (200)
Q Consensus 80 i~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~---------~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~ 150 (200)
|..+||.++ -.|.++.++++|+|||+.|| +.++++|+++...-...++|+||++||+||+|+.+|+.+
T Consensus 175 IqnAGGSVM---IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelce 251 (379)
T KOG0697|consen 175 IQNAGGSVM---IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCE 251 (379)
T ss_pred HhcCCCeEE---EEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHH
Confidence 999999998 45889999999999999998 559999999998888888999999999999999999999
Q ss_pred HHHc----CCCHHHHHHHHHHHHHhcCCCCceEEEEEEccCCCC
Q 029027 151 LART----GEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNE 190 (200)
Q Consensus 151 i~~~----~~~~~~~a~~l~~~a~~~g~~DN~T~ivi~~~~~~~ 190 (200)
+++. ..+..+++..+++.++-+|++||+|+|++.|...+.
T Consensus 252 fv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APk 295 (379)
T KOG0697|consen 252 FVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPK 295 (379)
T ss_pred HHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCCCCC
Confidence 9977 568899999999999999999999999999987655
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.6e-34 Score=227.45 Aligned_cols=180 Identities=45% Similarity=0.724 Sum_probs=161.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhc--CCCCCCCceEEEEEEECCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHH
Q 029027 2 TDTKLAISETYQQTDVDFLESER--DTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKR 79 (200)
Q Consensus 2 ~~~~~~l~~a~~~~n~~i~~~~~--~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~ 79 (200)
.++++.|.++|+.+|+.+..... .....+|||++++++.+++++++|+||||+|++|++++.++|.||++.++.++.+
T Consensus 69 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~ 148 (254)
T cd00143 69 EDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERER 148 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHH
Confidence 35678899999999999987743 3556799999999999999999999999999999999999999999999899999
Q ss_pred HHHhCCeEEeCCceeeeceeecccccCCcccccccccCCceeEEEe-ecCceEEEEEcCCCcCCCChHHHHHHHHcCC--
Q 029027 80 IENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEV-DEGFELLVLASDGLWDVVPNEDAVALARTGE-- 156 (200)
Q Consensus 80 i~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l-~~~~d~liL~SDGv~d~l~~~~i~~i~~~~~-- 156 (200)
+...++.+. ..+.++...++++||...+++.+..+|++..+.+ .++ |+|||||||||+++++++|.+++....
T Consensus 149 i~~~~~~~~---~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~-d~ill~SDG~~~~l~~~~i~~~~~~~~~~ 224 (254)
T cd00143 149 IEKAGGRVS---NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDD-DFLILASDGLWDVLSNQEAVDIVRSELAK 224 (254)
T ss_pred HHHcCCcEE---eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCC-cEEEEECCCCeeccChHHHHHHHHHHhcc
Confidence 999888654 3455566789999999987777788999999999 776 899999999999999999999998866
Q ss_pred -CHHHHHHHHHHHHHhcCCCCceEEEEEEc
Q 029027 157 -EPEIAARKLTETAFTRGSADNITCIVVRF 185 (200)
Q Consensus 157 -~~~~~a~~l~~~a~~~g~~DN~T~ivi~~ 185 (200)
+++++|+.|++.|..+++.||+|+|++++
T Consensus 225 ~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 225 EDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred cCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 79999999999999999999999999975
No 8
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.5e-34 Score=252.25 Aligned_cols=175 Identities=26% Similarity=0.316 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHhhhc--C--CCCCCCceEEEEEEECCEEEEEEecCccEEEE-eCCceeeCCCCCCCCChhHHHH
Q 029027 5 KLAISETYQQTDVDFLESER--D--TYRDDGSTASTAILVGNHLYVANVGDSRTVIS-KAGKAIPLSEDHKPNRCDERKR 79 (200)
Q Consensus 5 ~~~l~~a~~~~n~~i~~~~~--~--~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~-r~g~~~~lt~dh~~~~~~e~~~ 79 (200)
++.|.++|..+|+.|++... . ...+||||++++++.++++|++||||||+|++ |+|++.+||+||++.+.
T Consensus 455 ~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~----- 529 (645)
T PRK14559 455 EETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR----- 529 (645)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH-----
Confidence 56799999999999987622 1 45579999999999999999999999999988 57899999999998763
Q ss_pred HHHhCCeEEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCceEEEEEcCCCcCC--CCh---HHHHHHHHc
Q 029027 80 IENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDV--VPN---EDAVALART 154 (200)
Q Consensus 80 i~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~--l~~---~~i~~i~~~ 154 (200)
+++.| +.......+++.+.+||+||+...+ ..+|++..+.+.++ |+||||||||||+ +.. +++..++..
T Consensus 530 lv~~G--i~~~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~~ 603 (645)
T PRK14559 530 EIQRG--VEPQIAYARPDAYQLTQALGPRDNS---AIQPDIQFLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLSS 603 (645)
T ss_pred HHHhC--CCHHHHhcCcccceeeeccCCCCCC---cccceEEEEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHhc
Confidence 33333 2222333345667899999996532 35899999999987 8999999999994 554 345677777
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEccCCCC
Q 029027 155 GEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNE 190 (200)
Q Consensus 155 ~~~~~~~a~~l~~~a~~~g~~DN~T~ivi~~~~~~~ 190 (200)
..+++++++.|++.|+.+|+.||+|+||+++...+.
T Consensus 604 ~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~ 639 (645)
T PRK14559 604 SANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQ 639 (645)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCC
Confidence 778999999999999999999999999999976554
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=6.6e-34 Score=225.69 Aligned_cols=177 Identities=50% Similarity=0.800 Sum_probs=158.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcC--CCCCCCceEEEEEEECCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHHH
Q 029027 3 DTKLAISETYQQTDVDFLESERD--TYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRI 80 (200)
Q Consensus 3 ~~~~~l~~a~~~~n~~i~~~~~~--~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~i 80 (200)
.+.+.|.+++..+|+.+...... ....+|||++++++..++++++|+||||+|++|++++.++|+||++.+..+..++
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i 152 (255)
T smart00332 73 DVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARI 152 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHH
Confidence 47888999999999999877333 3466999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEeCCceeeeceeecccccCCcccccccccCCceeEEEe-ecCceEEEEEcCCCcCCCChHHHHHHHHcCC---
Q 029027 81 ENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEV-DEGFELLVLASDGLWDVVPNEDAVALARTGE--- 156 (200)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l-~~~~d~liL~SDGv~d~l~~~~i~~i~~~~~--- 156 (200)
...++.+.. .++++.+.++|++|...+++.+..+|++...++ .++ |+|||||||||++++++++.+++....
T Consensus 153 ~~~~~~~~~---~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~-d~ill~SDGv~~~l~~~~i~~~~~~~~~~~ 228 (255)
T smart00332 153 EAAGGFVIN---GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKD-DFLILASDGLWDVLSNQEVVDIVRKHLSKS 228 (255)
T ss_pred HHcCCEEEC---CeECCeEecccccCCHhhcCCeEeeeEEEEEEecCCC-cEEEEECCccccCCCHHHHHHHHHHHhhcC
Confidence 999887653 256667789999999988888889999999996 776 899999999999999999999998754
Q ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEE
Q 029027 157 EPEIAARKLTETAFTRGSADNITCIVV 183 (200)
Q Consensus 157 ~~~~~a~~l~~~a~~~g~~DN~T~ivi 183 (200)
++.++++.|++.|..++..||+|+||+
T Consensus 229 ~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 229 DPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred CHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 599999999999999999999999985
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-32 Score=217.69 Aligned_cols=162 Identities=37% Similarity=0.619 Sum_probs=148.6
Q ss_pred CCCCCCCceEEEEEEECCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHHHHHhCCeEEeCCceeeeceeecccc
Q 029027 25 DTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRA 104 (200)
Q Consensus 25 ~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~i~~~~g~~~~~~~~~~~~~~~~tr~ 104 (200)
.....+|||++||++.+.+++++|.||||+++.|+|+.+-++.||.|....|..||..+||.++..+ |.++.++++|+
T Consensus 325 ePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDG--RVNGGLNLSRA 402 (542)
T KOG0699|consen 325 EPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDG--RVNGGLNLSRA 402 (542)
T ss_pred CCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecc--eecCccchhhh
Confidence 3456799999999999999999999999999999999999999999999999999999999998765 78999999999
Q ss_pred cCCcccc---------cccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHc----CCCHHHHHHHHHHHHHh
Q 029027 105 FGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART----GEEPEIAARKLTETAFT 171 (200)
Q Consensus 105 lG~~~~~---------~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~----~~~~~~~a~~l~~~a~~ 171 (200)
||++.|| +.+++-|+++.+.|.+.++|+|+++||+|++|+.+++.++++. .....++++.|++.+++
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA 482 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA 482 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 9999998 4488899999999999999999999999999999999888865 56788999999999988
Q ss_pred cC------CCCceEEEEEEccCC
Q 029027 172 RG------SADNITCIVVRFHHV 188 (200)
Q Consensus 172 ~g------~~DN~T~ivi~~~~~ 188 (200)
.. +.||+|+|++.|...
T Consensus 483 p~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 483 PSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred CCCCCCCcCCCcceEEEEEeccc
Confidence 53 689999999999843
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=9.1e-30 Score=206.64 Aligned_cols=172 Identities=38% Similarity=0.591 Sum_probs=148.2
Q ss_pred cHHHHHHHHHHHHHHHHHhh------hcCCCCCCCceEEEEEEECCEEEEEEecCccEEEEe---CC---ceeeCCCCCC
Q 029027 3 DTKLAISETYQQTDVDFLES------ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISK---AG---KAIPLSEDHK 70 (200)
Q Consensus 3 ~~~~~l~~a~~~~n~~i~~~------~~~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r---~g---~~~~lt~dh~ 70 (200)
.+.++|.+||+++++.+... ..+...-+|||+++.++.++.+|+||+|||||++.+ +| ...|||.||+
T Consensus 168 ~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn 247 (390)
T KOG0700|consen 168 DVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHN 247 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhc
Confidence 46789999999999999765 344566799999999999999999999999999853 33 4689999999
Q ss_pred CCChhHHHHHHHhCC---eEEeCCceeeeceeecccccCCcccc---------------------cccccCCceeEEEee
Q 029027 71 PNRCDERKRIENAGG---VVMWAGTWRVGGVLAMSRAFGNRMLK---------------------QFVVAEPEIQDLEVD 126 (200)
Q Consensus 71 ~~~~~e~~~i~~~~g---~~~~~~~~~~~~~~~~tr~lG~~~~~---------------------~~~~~~p~~~~~~l~ 126 (200)
..++.|++||..... .+...+..|+.|.+.++|+||+..+| |+++++|.++.++|.
T Consensus 248 ~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~ 327 (390)
T KOG0700|consen 248 ASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLT 327 (390)
T ss_pred cccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcC
Confidence 999999999988764 22223347999999999999999998 679999999999999
Q ss_pred cCceEEEEEcCCCcCCCChHHHHHHHHcC----CCHHHHHHHHHHHHHhcCC
Q 029027 127 EGFELLVLASDGLWDVVPNEDAVALARTG----EEPEIAARKLTETAFTRGS 174 (200)
Q Consensus 127 ~~~d~liL~SDGv~d~l~~~~i~~i~~~~----~~~~~~a~~l~~~a~~~g~ 174 (200)
+.|.|+||+|||+|++++++|+..++... ..-+.+|+.|++.|+.+..
T Consensus 328 p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~aa 379 (390)
T KOG0700|consen 328 PNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRAA 379 (390)
T ss_pred CCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhhh
Confidence 99999999999999999999999999772 3456889999999988643
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=1.5e-23 Score=166.28 Aligned_cols=182 Identities=29% Similarity=0.493 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEEECCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHHHHHhC
Q 029027 5 KLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAG 84 (200)
Q Consensus 5 ~~~l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~i~~~~ 84 (200)
.-+|..||+..+.+|-.....-....|||+.+++.--+++|++|.||||++++|++++..++++.+|.. ||+|++..+
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPet--ERqRlQ~La 298 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPET--ERQRLQELA 298 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHH--HHHHHHHHh
Confidence 457899999999999877666666789999999999999999999999999999999999999999987 888886553
Q ss_pred --------CeEE--------------------------------------------eCCceeeeceeecccccCCcccc-
Q 029027 85 --------GVVM--------------------------------------------WAGTWRVGGVLAMSRAFGNRMLK- 111 (200)
Q Consensus 85 --------g~~~--------------------------------------------~~~~~~~~~~~~~tr~lG~~~~~- 111 (200)
+..+ .....|+.+.+.++|-|||+.++
T Consensus 299 f~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv 378 (493)
T KOG1323|consen 299 FRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKV 378 (493)
T ss_pred hcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeee
Confidence 1110 01223334568899999999875
Q ss_pred --------cccccCCceeEEEeec----CceEEEEEcCCCcCCCChHHHHHHHHc------CCCHH---HHHHHHHHHHH
Q 029027 112 --------QFVVAEPEIQDLEVDE----GFELLVLASDGLWDVVPNEDAVALART------GEEPE---IAARKLTETAF 170 (200)
Q Consensus 112 --------~~~~~~p~~~~~~l~~----~~d~liL~SDGv~d~l~~~~i~~i~~~------~~~~~---~~a~~l~~~a~ 170 (200)
|+.++.|++..+++.. .||++||+|||+||+++++++..++++ ..+|. .+|+.|+..|.
T Consensus 379 ~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~ar 458 (493)
T KOG1323|consen 379 VDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAAR 458 (493)
T ss_pred ecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhc
Confidence 6788899999888764 258999999999999999999999876 13443 45566666553
Q ss_pred h-------------cCCCCceEEEEEEccCC
Q 029027 171 T-------------RGSADNITCIVVRFHHV 188 (200)
Q Consensus 171 ~-------------~g~~DN~T~ivi~~~~~ 188 (200)
. -|+-|+|||.||-+...
T Consensus 459 g~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 459 GQQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred CccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 3 14689999999987653
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.85 E-value=3.9e-20 Score=146.26 Aligned_cols=156 Identities=21% Similarity=0.348 Sum_probs=111.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEEE--CCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHH
Q 029027 2 TDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV--GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKR 79 (200)
Q Consensus 2 ~~~~~~l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~--~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~ 79 (200)
.++...|.+|+.++ .+...+ .-.+||+++++++ +++|+++|+|||.+.++|+|++++-|..+.+......+
T Consensus 145 ~~P~~lL~~ay~~l----~~~~~~--~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQ- 217 (330)
T KOG1379|consen 145 SDPVNLLEKAYAEL----KSQKVP--IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQ- 217 (330)
T ss_pred CChHHHHHHHHHHH----hhcCCC--CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCcee-
Confidence 45666666666554 222111 1257888888888 89999999999999999999999999876543311100
Q ss_pred HHHhCCeEEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHc-----
Q 029027 80 IENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART----- 154 (200)
Q Consensus 80 i~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~----- 154 (200)
+... +. ....++++. ....+.+++++.+| |+|||+||||||+|.+++|..++..
T Consensus 218 -------Ls~~-----p~--~~~~~~~d~------p~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~~ 276 (330)
T KOG1379|consen 218 -------LSSP-----PE--GYSSYISDV------PDSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDARG 276 (330)
T ss_pred -------eccC-----Cc--cccccccCC------ccccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhhccc
Confidence 0000 00 002234442 23567889999998 8999999999999999999999965
Q ss_pred CCCHHHHHHHHHHHHHh-----------------------cCCCCceEEEEEEc
Q 029027 155 GEEPEIAARKLTETAFT-----------------------RGSADNITCIVVRF 185 (200)
Q Consensus 155 ~~~~~~~a~~l~~~a~~-----------------------~g~~DN~T~ivi~~ 185 (200)
..+++..|+.|++.|.+ .|..|+||+||..+
T Consensus 277 ~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 277 NLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred cccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 45789999999999866 24589999999754
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-19 Score=159.98 Aligned_cols=179 Identities=28% Similarity=0.456 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEEEC--------CEEEEEEecCccEEEEeCCceeeCCCCC-CCCChhH
Q 029027 6 LAISETYQQTDVDFLESERDTYRDDGSTASTAILVG--------NHLYVANVGDSRTVISKAGKAIPLSEDH-KPNRCDE 76 (200)
Q Consensus 6 ~~l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~~--------~~~~~~~vGDSr~y~~r~g~~~~lt~dh-~~~~~~e 76 (200)
+.|+.+|...|+++...+ ...|..++.+.+.. .++++||+|+|.++++++|+-.++|+-. ....+.|
T Consensus 589 ~~mr~~fl~~~rklg~~g----~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE 664 (1081)
T KOG0618|consen 589 EQMRNTFLRLNRKLGEEG----QVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREE 664 (1081)
T ss_pred HHHHHHHHHHhhhhhhhh----ccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHH
Confidence 449999999999984332 23466666666653 4789999999999999999988888765 4458999
Q ss_pred HHHHHHhCCeEEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHcCC
Q 029027 77 RKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGE 156 (200)
Q Consensus 77 ~~~i~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~~~ 156 (200)
.+||+..+|++.. .++.+|....||++|.....|.+.++|++....+.+.+++||+++-++|++|+-+++.++++...
T Consensus 665 ~~RI~~~~g~i~e--d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~ 742 (1081)
T KOG0618|consen 665 YKRIVDSKGFITE--DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVE 742 (1081)
T ss_pred HHHHHHhcCeecC--CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCC
Confidence 9999999999986 56788888999999999999999999999999999999999999999999999999999999989
Q ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEEEccCCCC
Q 029027 157 EPEIAARKLTETAFTRGSADNITCIVVRFHHVNE 190 (200)
Q Consensus 157 ~~~~~a~~l~~~a~~~g~~DN~T~ivi~~~~~~~ 190 (200)
+|-.+|+.|++.|...|..||++++|+++....+
T Consensus 743 dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 743 DPLLAAKKLCDLAQSYGCAENVSVLVVRLNHLEE 776 (1081)
T ss_pred chHHHHHHHHHHHHhcccccCeeEEEEEeecchh
Confidence 9999999999999999999999999999976544
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.67 E-value=2.3e-15 Score=114.81 Aligned_cols=122 Identities=22% Similarity=0.287 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceEEEEEE--ECCEEEEEEecCccEEEEe-CCceeeCCCCCCCCChhHHHHHHHhC
Q 029027 8 ISETYQQTDVDFLESERDTYRDDGSTASTAIL--VGNHLYVANVGDSRTVISK-AGKAIPLSEDHKPNRCDERKRIENAG 84 (200)
Q Consensus 8 l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i--~~~~~~~~~vGDSr~y~~r-~g~~~~lt~dh~~~~~~e~~~i~~~~ 84 (200)
+.+.+..+|+.+... ....+|+|++++++ ..++++++|+||+|+|+++ ++...+.+.+.
T Consensus 66 ~~~~l~~~n~~l~~~---~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~--------------- 127 (193)
T smart00331 66 LSQILERLNRAIYEN---GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL--------------- 127 (193)
T ss_pred HHHHHHHHHHHHHhc---CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC---------------
Confidence 566777788877655 23458999999998 5889999999999999998 56555555442
Q ss_pred CeEEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHcC--CCHHHHH
Q 029027 85 GVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTG--EEPEIAA 162 (200)
Q Consensus 85 g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~~--~~~~~~a 162 (200)
+..+|... ..+++...+++.+| |.|+|+|||+|+.++++++.+++.+. .++++++
T Consensus 128 -----------------~~~lG~~~-----~~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~ 184 (193)
T smart00331 128 -----------------GAPLGLEP-----DVEVDVRELTLEPG-DLLLLYTDGLTEARNPERLEELLEELLGSPPAEIA 184 (193)
T ss_pred -----------------CceeeeCC-----CCcceeEEEeeCCC-CEEEEECCCccccCChHHHHHHHHHhcCCCHHHHH
Confidence 33466543 23567788999998 89999999999999999999999873 4688888
Q ss_pred HHHHHHHH
Q 029027 163 RKLTETAF 170 (200)
Q Consensus 163 ~~l~~~a~ 170 (200)
+.+++.+.
T Consensus 185 ~~i~~~~~ 192 (193)
T smart00331 185 QRILEELL 192 (193)
T ss_pred HHHHHHHh
Confidence 88887654
No 16
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.59 E-value=5.4e-14 Score=126.88 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCceEEEEEEE--CCEEEEEEecCccEEEEeCCceeeCCCCCCCCChhHHHHHHHhCCe
Q 029027 9 SETYQQTDVDFLESERDTYRDDGSTASTAILV--GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGV 86 (200)
Q Consensus 9 ~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~--~~~~~~~~vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~i~~~~g~ 86 (200)
..++..+|..+.... ...+.+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+.|
T Consensus 617 ~~ai~~lN~~L~~~~---~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP--------------- 678 (764)
T TIGR02865 617 EVAIKTVNSILSLRS---TDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP--------------- 678 (764)
T ss_pred HHHHHHHHHHHHhCC---CCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce---------------
Confidence 467788888775442 22478999999997 7999999999999999999988888654322
Q ss_pred EEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCceEEEEEcCCCcCCCChHH-----HHHHHHc--CCCHH
Q 029027 87 VMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED-----AVALART--GEEPE 159 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~-----i~~i~~~--~~~~~ 159 (200)
+|-.. ..+++..+.++.+| |+|+|+|||+||..++.+ +.++++. ..+|+
T Consensus 679 ------------------lGil~-----~~~~~~~~~~L~~G-D~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ 734 (764)
T TIGR02865 679 ------------------IGILD-----EVDVELVRKKLKNG-DLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPE 734 (764)
T ss_pred ------------------eEecc-----CCccceEEEEeCCC-CEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHH
Confidence 22211 23567778899998 899999999999876533 7777765 46899
Q ss_pred HHHHHHHHHHHhcC---CCCceEEEEEEc
Q 029027 160 IAARKLTETAFTRG---SADNITCIVVRF 185 (200)
Q Consensus 160 ~~a~~l~~~a~~~g---~~DN~T~ivi~~ 185 (200)
++++.|++.+.+.. ..||+|++++++
T Consensus 735 ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 735 EIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 99999999998653 489999999987
No 17
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.56 E-value=1.1e-14 Score=112.70 Aligned_cols=101 Identities=24% Similarity=0.465 Sum_probs=62.1
Q ss_pred cCCCCCCCceEEEEEEECCEEEEEEecCccEE-EEeCCceeeCCCCCCCCChhHHHHHHHhCCeEEeCCceeeeceeecc
Q 029027 24 RDTYRDDGSTASTAILVGNHLYVANVGDSRTV-ISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMS 102 (200)
Q Consensus 24 ~~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y-~~r~g~~~~lt~dh~~~~~~e~~~i~~~~g~~~~~~~~~~~~~~~~t 102 (200)
......++||++++++.++.++++|+||||+| +.++|++..++.+|+... . ..+
T Consensus 91 ~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~-------~------------------~~~ 145 (212)
T PF13672_consen 91 DLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEY-------P------------------NQT 145 (212)
T ss_dssp SGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHH-------H------------------HCT
T ss_pred cccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchh-------h------------------hhh
Confidence 44556689999999999999999999999997 468999999999996211 0 013
Q ss_pred cccCCcccccccccCCceeEEEeecCceEEEEEcCCCcCCCChHH-HHHHHHc
Q 029027 103 RAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED-AVALART 154 (200)
Q Consensus 103 r~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~-i~~i~~~ 154 (200)
+.+.... .....++..+++.++ +.|+|||||||+.+...+ +..++..
T Consensus 146 ~~~~~~~----~~~~~~~~~~~~~~~-d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 146 RSLTGDD----PEPDVQYGSIPLEEG-DVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp TSCCHHC----CCTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred hccCccc----cccCCeEEEEEcCCC-CEEEEECcCccccCCCHHHHHHHhhh
Confidence 3333321 122346667788887 899999999999998654 6677655
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.54 E-value=1e-12 Score=99.97 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceEEEEEEE--CCEEEEEEecCccEEEEeCC--ceeeCCCCCCCCChhHHHHHHHh
Q 029027 8 ISETYQQTDVDFLESERDTYRDDGSTASTAILV--GNHLYVANVGDSRTVISKAG--KAIPLSEDHKPNRCDERKRIENA 83 (200)
Q Consensus 8 l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~--~~~~~~~~vGDSr~y~~r~g--~~~~lt~dh~~~~~~e~~~i~~~ 83 (200)
..+.+..+|+.+....... .+.+|++++.++ .+.++++|+|++++++++++ ....+.....
T Consensus 40 p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~------------- 104 (193)
T PF07228_consen 40 PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGP------------- 104 (193)
T ss_dssp HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSB-------------
T ss_pred HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCcc-------------
Confidence 4567788888885553332 468899988887 78999999999999999994 3333322111
Q ss_pred CCeEEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCceEEEEEcCCCcCCCChH-------HHHHHHHc--
Q 029027 84 GGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNE-------DAVALART-- 154 (200)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~-------~i~~i~~~-- 154 (200)
.+|... ...+....+++.+| |.|+|+|||+++....+ .+.+++.+
T Consensus 105 --------------------~lG~~~-----~~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~ 158 (193)
T PF07228_consen 105 --------------------PLGIFE-----DIDYQEQEIQLEPG-DRLLLYTDGLFEALNEDGEFFGEERLLELLDENR 158 (193)
T ss_dssp --------------------BCSSSC-----TTCEEEEEEE--TT-EEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHT
T ss_pred --------------------ceeeec-----cccccceEEEeccc-cEEEEeCCChhhccCCccchhHHHHHHHHHhhcc
Confidence 145432 23555678999998 99999999999998443 34567763
Q ss_pred CCCHHHHHHHHHHHHHhc---CCCCceEEEEEEc
Q 029027 155 GEEPEIAARKLTETAFTR---GSADNITCIVVRF 185 (200)
Q Consensus 155 ~~~~~~~a~~l~~~a~~~---g~~DN~T~ivi~~ 185 (200)
..++++.++.|.+.+... ...||+|++++++
T Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~ 192 (193)
T PF07228_consen 159 GLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRR 192 (193)
T ss_dssp TS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEE
Confidence 567999999999998773 4789999999986
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.61 E-value=3e-06 Score=71.07 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCceEEEEEEE--CCEEEEEEecCccEEEEeCCce---eeCCCCCCCCChhHHHHHHHhC
Q 029027 10 ETYQQTDVDFLESERDTYRDDGSTASTAILV--GNHLYVANVGDSRTVISKAGKA---IPLSEDHKPNRCDERKRIENAG 84 (200)
Q Consensus 10 ~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~--~~~~~~~~vGDSr~y~~r~g~~---~~lt~dh~~~~~~e~~~i~~~~ 84 (200)
..++.+|+.++...... +-+|+...+++ .+.+.++|+|=--.++++.++- ..++
T Consensus 214 ~~l~~~n~~~~~~~~~~---~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~------------------ 272 (367)
T COG2208 214 DVLETLNRVLKQNLEED---MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT------------------ 272 (367)
T ss_pred HHHHHHHHHHHhcccCC---cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc------------------
Confidence 45666777666553333 78999999988 7899999999999998887642 2221
Q ss_pred CeEEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCceEEEEEcCCCcC-------CCChHHHHHHHHc--C
Q 029027 85 GVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWD-------VVPNEDAVALART--G 155 (200)
Q Consensus 85 g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d-------~l~~~~i~~i~~~--~ 155 (200)
.....+|... ...+.+....+.+| |.++|.|||+.+ .+..+.+.+++.. .
T Consensus 273 ---------------~~g~piG~~~-----~~~~~~~~~~l~~g-d~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~ 331 (367)
T COG2208 273 ---------------ALGLPIGLLP-----DYQYEVASLQLEPG-DLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLG 331 (367)
T ss_pred ---------------CCCceeeecC-----CccchheeEEecCC-CEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhC
Confidence 1234456543 34666778899997 899999999999 4556667777763 4
Q ss_pred CCHHHHHHHHHHHHHhc----CCCCceEEEEEEcc
Q 029027 156 EEPEIAARKLTETAFTR----GSADNITCIVVRFH 186 (200)
Q Consensus 156 ~~~~~~a~~l~~~a~~~----g~~DN~T~ivi~~~ 186 (200)
.+++++++.+.+...+. ...|++|++++++.
T Consensus 332 ~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 332 QPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred CCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 68888888888877554 24688999999975
No 20
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=69.07 E-value=2.7 Score=28.16 Aligned_cols=52 Identities=27% Similarity=0.478 Sum_probs=34.7
Q ss_pred EeecCceEEEEEcCCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCceE
Q 029027 124 EVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNIT 179 (200)
Q Consensus 124 ~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~~~~~~~~a~~l~~~a~~~g~~DN~T 179 (200)
-+.++ |.++|+.|||+-.+...+..+-++.. | ..+-.|-+-..+||-.+.++
T Consensus 21 ~l~~~-D~vlL~qdGV~aAl~~~~~~~sl~~~--p-~~~~alkeDl~ARGl~~~~s 72 (96)
T COG2168 21 LLTEG-DAVLLLQDGVYAALKGNRYLASLRES--P-IKVYALKEDLLARGLTGQIS 72 (96)
T ss_pred Hhccc-CeEEEEcccchhhhcCcHHHHHHhcC--c-cceeeehhhHHhccchhhcC
Confidence 34566 89999999999999988887777663 2 22334455556666444333
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=61.77 E-value=7.2 Score=24.73 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCcCCCChHHHHHH
Q 029027 129 FELLVLASDGLWDVVPNEDAVAL 151 (200)
Q Consensus 129 ~d~liL~SDGv~d~l~~~~i~~i 151 (200)
+..+++++||+|=.+....+.-+
T Consensus 27 G~Rllva~nGv~lEv~r~WL~~~ 49 (72)
T PF09436_consen 27 GHRLLVASNGVFLEVRRPWLHVI 49 (72)
T ss_pred CcEEEEecCcEEEEEechHHHHh
Confidence 48999999999987776665444
No 22
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=56.74 E-value=19 Score=21.83 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.7
Q ss_pred CChHHHHHHHHc-CCCHHHHHHHHHH
Q 029027 143 VPNEDAVALART-GEEPEIAARKLTE 167 (200)
Q Consensus 143 l~~~~i~~i~~~-~~~~~~~a~~l~~ 167 (200)
-++++|..++.+ ..+|.++++.|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 578999999988 6799999999886
No 23
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=54.13 E-value=29 Score=26.35 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=31.0
Q ss_pred ceEEEEEcCCCcC-----------CCChHHHHHHHHc----CCCHHHHHHHHHHHHHhcC
Q 029027 129 FELLVLASDGLWD-----------VVPNEDAVALART----GEEPEIAARKLTETAFTRG 173 (200)
Q Consensus 129 ~d~liL~SDGv~d-----------~l~~~~i~~i~~~----~~~~~~~a~~l~~~a~~~g 173 (200)
||.++..|.|||. +|..+.+=+.+.. ..-|.+.|.+|++.-..||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 4788999999984 3334444444433 2358899999999887775
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=50.83 E-value=31 Score=17.08 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=16.8
Q ss_pred EEEECCEEEEEEecCccEEEE
Q 029027 37 AILVGNHLYVANVGDSRTVIS 57 (200)
Q Consensus 37 ~~i~~~~~~~~~vGDSr~y~~ 57 (200)
++-.++.+|++-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 344789999999999998754
No 25
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=46.34 E-value=27 Score=28.23 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=18.9
Q ss_pred CCCceEEEEEEECCEEEEEEecCc
Q 029027 29 DDGSTASTAILVGNHLYVANVGDS 52 (200)
Q Consensus 29 ~~gtT~~~~~i~~~~~~~~~vGDS 52 (200)
-+|||++.+ +.++.+|..|+|-+
T Consensus 131 LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 131 LSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp BSS-EEEEE-EETTEEEEEEEEES
T ss_pred cCCCEEEEE-EcCCeEEEEEcCCC
Confidence 378888776 68999999999987
No 26
>PF05926 Phage_GPL: Phage head completion protein (GPL); InterPro: IPR009225 This entry is represented by Bacteriophage P2, GpL. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage head completion protein (GpL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids [].; GO: 0019069 viral capsid assembly
Probab=38.60 E-value=66 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEcCCCcCCCChHHHHHHHHc
Q 029027 133 VLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 133 iL~SDGv~d~l~~~~i~~i~~~ 154 (200)
++.+||||-.|+-.++.+.++-
T Consensus 1 tI~ndgFwPdI~l~~fr~~~Ri 22 (140)
T PF05926_consen 1 TITNDGFWPDIDLAEFREAMRI 22 (140)
T ss_pred CccCCCcCCCCCHHHHHHHhCC
Confidence 3679999999999999888764
No 27
>PRK03982 heat shock protein HtpX; Provisional
Probab=34.79 E-value=40 Score=27.33 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=25.8
Q ss_pred CceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 118 PEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 118 p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
|.-...-..+. +..|..|||+.+.++++|+..++..
T Consensus 96 ~NAfa~G~~~~-~~~V~vt~gLl~~l~~~El~AVlAH 131 (288)
T PRK03982 96 PNAFATGRDPK-HAVVAVTEGILNLLNEDELEGVIAH 131 (288)
T ss_pred cceEEeccCCC-CeEEEeehHHHhhCCHHHHHHHHHH
Confidence 33333333343 5678899999999999999988843
No 28
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.72 E-value=20 Score=29.35 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=49.9
Q ss_pred CccEEEEeCCc-eeeCCCCCCCCChhHHHHHHHhCCeEEeCCceeeeceeecccccCCcccccccccCCceeEEEeecCc
Q 029027 51 DSRTVISKAGK-AIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGF 129 (200)
Q Consensus 51 DSr~y~~r~g~-~~~lt~dh~~~~~~e~~~i~~~~g~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~~~~~~l~~~~ 129 (200)
|||+|.+..+. +...-.||+.....-++.+...++..... +. .+.-.|=.....+.+.. --+...
T Consensus 104 DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~---~~----~Va~Dl~~~dw~~~L~~------~G~d~~- 169 (297)
T COG3315 104 DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAH---RR----LVAVDLREDDWPQALAA------AGFDRS- 169 (297)
T ss_pred ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCce---EE----EEeccccccchHHHHHh------cCCCcC-
Confidence 99999999885 88999999987755555555555432210 10 11111111000000000 000111
Q ss_pred eEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 130 ELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 130 d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
.-.++-.=|+.-|++++++..+++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~ 194 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSR 194 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHH
Confidence 2334555799999999999888855
No 29
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=32.90 E-value=13 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCcCCCChHHHHHHHH
Q 029027 129 FELLVLASDGLWDVVPNEDAVALAR 153 (200)
Q Consensus 129 ~d~liL~SDGv~d~l~~~~i~~i~~ 153 (200)
+|.|+|.-|||+-.+........+.
T Consensus 19 ~D~ilLiqDgV~~a~~~~~~~~~l~ 43 (88)
T PF04077_consen 19 GDAILLIQDGVYAALKGSPYFKLLQ 43 (88)
T ss_dssp T-EEEE-GGGGGGGBTTSTTHHHHH
T ss_pred CCEEEeeHHHHHHHhcCCHHHHHHh
Confidence 4899999999999888777666654
No 30
>PRK02391 heat shock protein HtpX; Provisional
Probab=32.82 E-value=36 Score=27.85 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=25.9
Q ss_pred CceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 118 PEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 118 p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
|.-...-..+. ..+|+.|||+.+.++++|+..++..
T Consensus 104 ~NAfa~G~~~~-~~~V~vt~gLl~~L~~~El~aVlaH 139 (296)
T PRK02391 104 PNAFATGRSPK-NAVVCVTTGLMRRLDPDELEAVLAH 139 (296)
T ss_pred CceEEecCCCC-CcEEEecHHHHhhCCHHHHHHHHHH
Confidence 33333333333 5778999999999999999888843
No 31
>PRK05457 heat shock protein HtpX; Provisional
Probab=32.49 E-value=45 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=26.9
Q ss_pred CceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 118 PEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 118 p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
|.-...-..+. ..+|+.|+|+++.++++|+..++..
T Consensus 105 ~NAfa~G~~~~-~~~V~vt~gLl~~L~~~El~aVlAH 140 (284)
T PRK05457 105 INAFATGASKN-NSLVAVSTGLLQNMSRDEVEAVLAH 140 (284)
T ss_pred ceEEEecCCCC-CeEEEeehHHhhhCCHHHHHHHHHH
Confidence 44444444444 6889999999999999999988844
No 32
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=31.99 E-value=1.2e+02 Score=19.60 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=25.9
Q ss_pred CCChHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 029027 142 VVPNEDAVALARTGEEPEIAARKLTETAFTRGS 174 (200)
Q Consensus 142 ~l~~~~i~~i~~~~~~~~~~a~~l~~~a~~~g~ 174 (200)
.++.+|+..+-.........|..|++....+|.
T Consensus 30 Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG~ 62 (83)
T cd08325 30 VLNEEEMEKIKEENNTIMDKARVLVDSVTEKGQ 62 (83)
T ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHhH
Confidence 567888888877655688899999998887763
No 33
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=30.28 E-value=30 Score=24.76 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEEE
Q 029027 3 DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV 40 (200)
Q Consensus 3 ~~~~~l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~ 40 (200)
.+++.+.+|...++..+.....-...+.|.|.++++..
T Consensus 35 ~l~~i~~eAa~~~gati~~~~~~~f~p~GvSgvvliaE 72 (136)
T COG1586 35 RLEEILLEAAKIAGATILNIAFHKFSPQGVSGVVLIAE 72 (136)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeEEecCCCeEEEEEEEe
Confidence 45667777777777777666666667789998888765
No 34
>PRK03072 heat shock protein HtpX; Provisional
Probab=29.42 E-value=44 Score=27.15 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=21.5
Q ss_pred eEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 130 ELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 130 d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
..+|.+|||+.+.++++|+..++..
T Consensus 109 ~~~v~vt~gLl~~l~~~El~aVlAH 133 (288)
T PRK03072 109 NAAVCCTEGILQILNERELRGVLGH 133 (288)
T ss_pred CcEEEecHHHHHhCCHHHHHHHHHH
Confidence 4678899999999999999988843
No 35
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=27.34 E-value=48 Score=25.35 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCcCCCChHHHHHHHHcC---------------------CCHHHHHHHHHHHHHhc
Q 029027 129 FELLVLASDGLWDVVPNEDAVALARTG---------------------EEPEIAARKLTETAFTR 172 (200)
Q Consensus 129 ~d~liL~SDGv~d~l~~~~i~~i~~~~---------------------~~~~~~a~~l~~~a~~~ 172 (200)
+..+++++||+|-.+....+..+..-. .-+....++++..|.+.
T Consensus 26 g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 26 GHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred CcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 489999999999998888776554211 22456777888888774
No 36
>PRK04897 heat shock protein HtpX; Provisional
Probab=25.55 E-value=60 Score=26.52 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=26.7
Q ss_pred CceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 118 PEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 118 p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
|.-...-..+. ...|+.|+|+.+.++++|+..++..
T Consensus 108 ~NAfa~G~~~~-~~~v~vt~gLl~~l~~~El~aVlAH 143 (298)
T PRK04897 108 PNAFATGSSPK-NAAVAVTTGLLAIMNREELEGVIGH 143 (298)
T ss_pred CceEEeccCCC-CcEEEeehHHHhhCCHHHHHHHHHH
Confidence 44444444444 5789999999999999999988844
No 37
>PRK10693 response regulator of RpoS; Provisional
Probab=25.38 E-value=3e+02 Score=22.25 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceEEEEEEE--CCEEEEEEecCccEEEEeCCce
Q 029027 8 ISETYQQTDVDFLESERDTYRDDGSTASTAILV--GNHLYVANVGDSRTVISKAGKA 62 (200)
Q Consensus 8 l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~~i~--~~~~~~~~vGDSr~y~~r~g~~ 62 (200)
..+.+..+|+.+....... ..|+..++++ .+.+.+++.|-...++..++++
T Consensus 207 p~~~l~~lN~~l~~~~~~~----~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 207 LGALLKQVNHLLRQANLPG----QFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHHHhcCCCc----eeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 3456667777776553222 2588888887 6789999999999885444444
No 38
>PF13876 Phage_gp49_66: Phage protein (N4 Gp49/phage Sf6 gene 66) family
Probab=24.20 E-value=94 Score=20.18 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=11.9
Q ss_pred CCceEEEEEE--ECCEEEEEEecCccEE
Q 029027 30 DGSTASTAIL--VGNHLYVANVGDSRTV 55 (200)
Q Consensus 30 ~gtT~~~~~i--~~~~~~~~~vGDSr~y 55 (200)
+|+|+++|++ .++...+ |.|-++
T Consensus 22 ~~~~~TvC~l~L~NGF~V~---g~SAcv 46 (81)
T PF13876_consen 22 GGDTLTVCVLTLKNGFTVT---GESACV 46 (81)
T ss_pred CceEEEEEEEEECCCcEEE---EeEccC
Confidence 4334444444 4555444 777664
No 39
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=23.52 E-value=89 Score=24.90 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhh-hcCCCCCCCceEEEEEEECCEEEEEEecCc
Q 029027 6 LAISETYQQTDVDFLES-ERDTYRDDGSTASTAILVGNHLYVANVGDS 52 (200)
Q Consensus 6 ~~l~~a~~~~n~~i~~~-~~~~~~~~gtT~~~~~i~~~~~~~~~vGDS 52 (200)
..+.++++.+|..|... ......+..|+-++++.+.+.--++.|||-
T Consensus 224 ~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 224 PKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred ccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 35788999999999877 333333333444444555665566666664
No 40
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=23.40 E-value=1.6e+02 Score=16.82 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=22.8
Q ss_pred ecCccEEEEeCCceeeCCCCCCCCChhHHHHHHHhCC
Q 029027 49 VGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG 85 (200)
Q Consensus 49 vGDSr~y~~r~g~~~~lt~dh~~~~~~e~~~i~~~~g 85 (200)
.||.|+-++....-+.|+-++.+....-.+-+....+
T Consensus 3 ~~eerV~Vi~~~tGk~l~G~~AP~~~~L~~WL~~~P~ 39 (46)
T PF07533_consen 3 TGEERVPVINRKTGKRLTGDEAPKLKELEEWLEEHPG 39 (46)
T ss_dssp TTTSB--EEETTTTEEE-CCCS-BCCCHHHHHHH-TT
T ss_pred CCcceeEeEECCCCCCcccccCcCHHHHHHHHHHCcC
Confidence 4899999998887888888888776544445544444
No 41
>PF07335 Glyco_hydro_75: Fungal chitosanase of glycosyl hydrolase group 75; InterPro: IPR009939 This family consists of chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase [].
Probab=22.77 E-value=1.2e+02 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.8
Q ss_pred EEEEECCEEEEEEecCc
Q 029027 36 TAILVGNHLYVANVGDS 52 (200)
Q Consensus 36 ~~~i~~~~~~~~~vGDS 52 (200)
++++.+++++.+-+||+
T Consensus 69 ~aVv~~~k~~y~I~GDt 85 (156)
T PF07335_consen 69 AAVVCNGKVVYAIVGDT 85 (156)
T ss_pred EEEEECCEEEEEEEecc
Confidence 34445999999999998
No 42
>PRK01345 heat shock protein HtpX; Provisional
Probab=22.74 E-value=77 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.6
Q ss_pred eEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 130 ELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 130 d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
...|+.|+|+.+.++++|+..++..
T Consensus 106 ~~~V~vt~gLL~~L~~dEL~aVlAH 130 (317)
T PRK01345 106 NAAVAATTGLLQRLSPEEVAGVMAH 130 (317)
T ss_pred CeEEEechHHHhhCCHHHHHHHHHH
Confidence 4678999999999999999988843
No 43
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=22.73 E-value=2.9e+02 Score=19.67 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=27.7
Q ss_pred ccCCceeEEEeecCceEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 115 VAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 115 ~~~p~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
.+.|.+....+..+.-.++-...|+|..++.++..++.+.
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKE 114 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHH
Confidence 4566676677776534455688889988888877776644
No 44
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=22.64 E-value=1.6e+02 Score=23.62 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCCceEEEEEEccCC
Q 029027 164 KLTETAFTRGSADNITCIVVRFHHV 188 (200)
Q Consensus 164 ~l~~~a~~~g~~DN~T~ivi~~~~~ 188 (200)
.|+..+...-..||+||+++.....
T Consensus 169 ~LVA~SV~gL~~enVtVV~~~~~~~ 193 (252)
T PRK15324 169 RFLKNSFADVDYDNISVVLSERSDA 193 (252)
T ss_pred HHHHhcCCCCCcccEEEEEEEcccc
Confidence 5667777778899999999965554
No 45
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=22.44 E-value=1.3e+02 Score=15.63 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=14.8
Q ss_pred CCEEEEEEecCccEEEEeC
Q 029027 41 GNHLYVANVGDSRTVISKA 59 (200)
Q Consensus 41 ~~~~~~~~vGDSr~y~~r~ 59 (200)
++++|++|-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 4678888988888887754
No 46
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=22.14 E-value=1.9e+02 Score=19.99 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCCCCceEEEEEEECCEEEEEEecCccEEEEeCC----ceeeCCCCCCCCC
Q 029027 27 YRDDGSTASTAILVGNHLYVANVGDSRTVISKAG----KAIPLSEDHKPNR 73 (200)
Q Consensus 27 ~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~g----~~~~lt~dh~~~~ 73 (200)
..+.|+|+.+++.++ ..+.||.=+.--.+| +++.|..++....
T Consensus 11 ~~G~G~t~dvIl~~G----tL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E 57 (110)
T cd03703 11 EEGLGTTIDVILYDG----TLREGDTIVVCGLNGPIVTKVRALLKPQPLKE 57 (110)
T ss_pred cCCCceEEEEEEECC----eEecCCEEEEccCCCCceEEEeEecCCCCchh
Confidence 346799999887654 357888877766676 7888888776543
No 47
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=21.51 E-value=1.1e+02 Score=19.87 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=18.4
Q ss_pred EEEEEcCCCcCCCChHHHHHHHHc
Q 029027 131 LLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 131 ~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
=+|+|+-+++.+++++++..++++
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRR 92 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHH
T ss_pred eEEEEcCCccCCCCHHHHHHHHHH
Confidence 356778887888999999888764
No 48
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=21.35 E-value=74 Score=19.99 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCCceE
Q 029027 162 ARKLTETAFTRGSADNIT 179 (200)
Q Consensus 162 a~~l~~~a~~~g~~DN~T 179 (200)
++..++.|.++|..||+.
T Consensus 2 ~e~~I~~A~~~GeFdnLp 19 (71)
T PF09350_consen 2 AERRIREAMARGEFDNLP 19 (71)
T ss_pred HHHHHHHHHHcCCccCCC
Confidence 567889999999999954
No 49
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=21.30 E-value=68 Score=25.71 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.6
Q ss_pred eEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 130 ELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 130 d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
.-.|..|+|+.+.++++|+..++..
T Consensus 139 ~~~V~vt~gLl~~l~~dEl~aVlaH 163 (302)
T COG0501 139 NGRVVVTTGLLDLLNDDELEAVLAH 163 (302)
T ss_pred CeeEEecHHHHhhCCHHHHHHHHHH
Confidence 3677899999999999999998844
No 50
>PRK02870 heat shock protein HtpX; Provisional
Probab=21.12 E-value=87 Score=26.16 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 130 ELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 130 d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
+..|..|||+.+.++++|+..++..
T Consensus 155 ~~~Ivvt~GLL~~L~~dEL~aVlAH 179 (336)
T PRK02870 155 SAMVAITTGLLEKLDRDELQAVMAH 179 (336)
T ss_pred CcEEEEehHHhhhCCHHHHHHHHHH
Confidence 4678999999999999999988843
No 51
>PRK03001 M48 family peptidase; Provisional
Probab=21.01 E-value=85 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.3
Q ss_pred eEEEEEcCCCcCCCChHHHHHHHHc
Q 029027 130 ELLVLASDGLWDVVPNEDAVALART 154 (200)
Q Consensus 130 d~liL~SDGv~d~l~~~~i~~i~~~ 154 (200)
..-|..|||+.+.++++|+..++..
T Consensus 106 ~~~Ivvt~gLl~~l~~~El~aVlAH 130 (283)
T PRK03001 106 HAAVAATTGILRVLSEREIRGVMAH 130 (283)
T ss_pred CeEEEecHHHHhhCCHHHHHHHHHH
Confidence 3568899999999999999988843
No 52
>COG4632 EpsL Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Probab=20.95 E-value=4.6e+02 Score=21.43 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=50.4
Q ss_pred EEEEEEECCEEEE--EEecCccE---EEEe-CCceeeCCCCCCCCChhHHHHHHHhCCeEE-e-CCceeeeceeeccccc
Q 029027 34 ASTAILVGNHLYV--ANVGDSRT---VISK-AGKAIPLSEDHKPNRCDERKRIENAGGVVM-W-AGTWRVGGVLAMSRAF 105 (200)
Q Consensus 34 ~~~~~i~~~~~~~--~~vGDSr~---y~~r-~g~~~~lt~dh~~~~~~e~~~i~~~~g~~~-~-~~~~~~~~~~~~tr~l 105 (200)
.+...|.+++++. -|.|++++ ..+. +|.++ .--+|++.+ ++..+|.-. . .+.......-..++-+
T Consensus 154 v~GfqisdGklvkp~dw~~~t~ae~~~aftkdG~lk-Vyg~~spa~------ll~sngaeasf~fgp~LIkdgk~~t~~~ 226 (320)
T COG4632 154 VMGFQISDGKLVKPYDWAGYTGAEACVAFTKDGTLK-VYGRESPAD------LLISNGAEASFAFGPWLIKDGKPRTAQM 226 (320)
T ss_pred EEEEEEeCCeEeecCChhhhccccceEEEccCCcEE-EcCCCChHH------HHHhccceeeeeeccEEEecCCcchhhc
Confidence 3466778999988 88999874 3444 45443 333677655 333333322 1 1222222222233323
Q ss_pred CCcccccccccCCceeEEEeecCceEEEEEcCCCcCC
Q 029027 106 GNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDV 142 (200)
Q Consensus 106 G~~~~~~~~~~~p~~~~~~l~~~~d~liL~SDGv~d~ 142 (200)
+..-- .-...|.....+-..+ ..++|.+||=--+
T Consensus 227 ~nsvd--~~g~~prtaIGqrkdg-~I~litvDgrqg~ 260 (320)
T COG4632 227 TNSVD--LNGKHPRTAIGQRKDG-TIVLITVDGRQGR 260 (320)
T ss_pred Ccccc--cCCCCchhhhcccCCC-cEEEEEEcCccce
Confidence 22110 0012444444444444 7999999997554
No 53
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=20.79 E-value=24 Score=24.38 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 029027 3 DTKLAISETYQQTDVDFLESERDTYRDDGSTASTA 37 (200)
Q Consensus 3 ~~~~~l~~a~~~~n~~i~~~~~~~~~~~gtT~~~~ 37 (200)
.+++.|.+|...++..+...........|-|.+++
T Consensus 24 ~l~~~l~~a~~~~g~ti~~~~~h~F~p~Gvt~v~l 58 (112)
T TIGR03330 24 FIEEILLEAAKVAGATLVASHFHKFSPGGVSGVVL 58 (112)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEcCCCcEEEEEE
Confidence 35556666666655544444333333445444444
Done!