BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029028
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKR----LENKCKAAEQASEDWYRKAQLALQK 156
+K L QAV M + + R A+ L +++ + + Q DW ++ + AL++
Sbjct: 160 QKPLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR 219
Query: 157 GEE---DLAREALKRRKSYADNANAL 179
GEE D+ + LK + D+ L
Sbjct: 220 GEEVPADILTQILKAEEGAQDDEGLL 245
>pdb|1URX|A Chain A, Crystallographic Structure Of Beta-Agarase A In Complex
With Oligoagarose
Length = 282
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 31 CMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNL 78
C K P T ++ GV VTR I P++ GG LN N+
Sbjct: 191 CYWKDPFTLEYYIDGVKVRTVTRAEIDPNN-----HLGGTGLNQATNI 233
>pdb|1O4Y|A Chain A, The Three-Dimensional Structure Of Beta-Agarase A From
Zobellia Galactanivorans
Length = 288
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 31 CMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNL 78
C K P T ++ GV VTR I P++ GG LN N+
Sbjct: 191 CYWKDPFTLEYYIDGVKVRTVTRAEIDPNN-----HLGGTGLNQATNI 233
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156
FED EKI+ Q E DD + + TA VL + E + D++ + L L +
Sbjct: 276 FEDGEKIVVQG--EPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNR 333
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111
P S+S + GGA + L+ RL +K+Y +L +D E +++++VL+
Sbjct: 67 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLL---KDGEDLMDESVLKF 118
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111
P S+S + GGA + L+ RL +K+Y +L +D E +++++VL+
Sbjct: 51 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLL---KDGEDLMDESVLKF 102
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111
P S+S + GGA + L+ RL +K+Y +L +D E +++++VL+
Sbjct: 53 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLL---KDGEDLMDESVLKF 104
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 46 VGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLAR 84
+G LKVT + A RS QG A+NT ++L R R
Sbjct: 47 LGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSER 85
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 46 VGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLAR 84
+G LKVT + A RS QG A+NT ++L R R
Sbjct: 47 LGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSER 85
>pdb|3LET|A Chain A, Crystal Structure Of Fic Domain Containing Ampylator, Vops
pdb|3LET|B Chain B, Crystal Structure Of Fic Domain Containing Ampylator, Vops
Length = 314
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 84 RVVKSYANAILSSFEDPEKILE--QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141
RVVK Y + ++ ++PE + QAV +M +K Q + LAS N+ AE
Sbjct: 97 RVVKDYGGGVAAAQKNPEVRINQMQAVFDMEVMHLKAAQRHIEGLASTDL--NQGVYAEG 154
Query: 142 ASEDWYRKA 150
ED + KA
Sbjct: 155 LPEDAFNKA 163
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 82 LARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141
L +S+ N I S DP K V + D ++ A ++ LA + L+N +
Sbjct: 25 LTSFYQSFLNTIWPSDADPWKAFMAQVEVLIDKKIE-EYAKSKALAELQGLQNNFEDYVN 83
Query: 142 ASEDWYRKAQLALQ-KGEEDLAREALKRRKSYADNA 176
A W +K L+L+ K +D RE + +S+ N+
Sbjct: 84 ALNSW-KKTPLSLRSKRSQDRIRELFSQAESHFRNS 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,530,293
Number of Sequences: 62578
Number of extensions: 147357
Number of successful extensions: 609
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 34
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)