Query 029028
Match_columns 200
No_of_seqs 138 out of 797
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02977 phageshock_pspA phag 100.0 6.6E-30 1.4E-34 217.4 18.7 123 76-198 1-123 (219)
2 PRK10698 phage shock protein P 100.0 8.6E-30 1.9E-34 217.8 18.7 123 76-198 1-123 (222)
3 PF04012 PspA_IM30: PspA/IM30 100.0 3.5E-28 7.6E-33 205.5 18.6 122 77-198 1-122 (221)
4 COG1842 PspA Phage shock prote 100.0 4E-28 8.7E-33 208.1 18.5 123 76-198 1-123 (225)
5 PF03357 Snf7: Snf7; InterPro 97.1 0.012 2.5E-07 47.1 11.5 76 121-196 2-77 (171)
6 PTZ00446 vacuolar sorting prot 97.0 0.017 3.7E-07 48.9 12.6 76 120-195 27-102 (191)
7 KOG2910 Uncharacterized conser 95.5 0.34 7.5E-06 41.3 11.8 77 118-194 14-90 (209)
8 PF15619 Lebercilin: Ciliary p 95.3 0.65 1.4E-05 39.3 13.0 113 82-198 37-149 (194)
9 KOG2911 Uncharacterized conser 95.1 0.26 5.7E-06 46.5 10.9 79 115-193 228-306 (439)
10 TIGR03752 conj_TIGR03752 integ 94.2 0.77 1.7E-05 43.9 11.6 83 107-193 60-142 (472)
11 PF00261 Tropomyosin: Tropomyo 94.1 3.4 7.4E-05 35.5 15.4 98 95-197 130-227 (237)
12 KOG0963 Transcription factor/C 93.3 1.8 3.8E-05 42.7 12.7 125 70-198 84-213 (629)
13 PRK11637 AmiB activator; Provi 93.2 2.7 5.9E-05 39.0 13.5 47 104-150 45-91 (428)
14 PTZ00464 SNF-7-like protein; P 93.0 2.3 5E-05 36.5 11.8 37 159-195 60-96 (211)
15 PF08317 Spc7: Spc7 kinetochor 93.0 5.9 0.00013 35.7 15.0 93 102-195 152-244 (325)
16 PRK08476 F0F1 ATP synthase sub 93.0 3.8 8.2E-05 32.6 14.0 13 107-119 60-72 (141)
17 KOG0804 Cytoplasmic Zn-finger 92.5 2.9 6.3E-05 39.9 12.6 93 106-199 354-446 (493)
18 PF03194 LUC7: LUC7 N_terminus 92.4 1.9 4.1E-05 37.9 10.7 92 100-191 84-180 (254)
19 PF11180 DUF2968: Protein of u 92.1 3.6 7.7E-05 35.1 11.5 111 80-197 72-184 (192)
20 PF05816 TelA: Toxic anion res 91.6 9 0.00019 34.7 14.4 70 75-144 71-140 (333)
21 KOG0971 Microtubule-associated 91.6 19 0.00042 37.5 18.0 122 74-198 225-349 (1243)
22 CHL00118 atpG ATP synthase CF0 91.2 6.7 0.00015 31.5 14.2 52 102-153 49-100 (156)
23 PRK11637 AmiB activator; Provi 91.1 9.4 0.0002 35.5 14.4 58 91-148 169-226 (428)
24 PRK09174 F0F1 ATP synthase sub 90.8 9.3 0.0002 32.5 14.2 52 102-153 80-131 (204)
25 PF09726 Macoilin: Transmembra 90.8 10 0.00022 38.1 15.0 105 93-197 447-575 (697)
26 PRK04863 mukB cell division pr 90.8 8.6 0.00019 41.8 15.3 76 78-156 258-336 (1486)
27 PRK15422 septal ring assembly 90.7 5.3 0.00011 29.5 10.2 60 97-156 16-75 (79)
28 PF06637 PV-1: PV-1 protein (P 90.5 7.6 0.00016 36.5 12.9 32 165-196 347-378 (442)
29 PRK02224 chromosome segregatio 90.4 17 0.00036 36.6 16.3 36 112-147 205-240 (880)
30 PF10168 Nup88: Nuclear pore c 90.3 7 0.00015 39.3 13.4 119 76-194 538-666 (717)
31 KOG0994 Extracellular matrix g 90.1 6.2 0.00013 42.0 12.9 50 102-151 1587-1636(1758)
32 PF04111 APG6: Autophagy prote 90.0 8.2 0.00018 34.9 12.5 89 102-195 46-134 (314)
33 TIGR03319 YmdA_YtgF conserved 89.8 5.2 0.00011 38.6 11.7 60 90-149 23-84 (514)
34 PRK13454 F0F1 ATP synthase sub 89.8 10 0.00022 31.4 13.8 51 102-152 58-108 (181)
35 PRK09039 hypothetical protein; 89.7 11 0.00024 34.5 13.2 44 108-151 118-161 (343)
36 COG1382 GimC Prefoldin, chaper 89.3 9.3 0.0002 30.2 12.0 92 107-198 7-108 (119)
37 COG3074 Uncharacterized protei 89.1 5 0.00011 29.1 8.4 63 94-156 13-75 (79)
38 PF00038 Filament: Intermediat 89.1 15 0.00032 32.2 13.9 62 85-146 29-94 (312)
39 smart00787 Spc7 Spc7 kinetocho 88.9 18 0.00038 32.9 14.1 96 101-197 146-241 (312)
40 KOG0250 DNA repair protein RAD 88.9 18 0.00038 38.1 15.2 36 108-143 339-374 (1074)
41 PRK10884 SH3 domain-containing 88.9 10 0.00022 32.4 11.7 34 165-198 137-170 (206)
42 TIGR01843 type_I_hlyD type I s 88.8 13 0.00028 33.5 13.0 11 43-53 51-61 (423)
43 KOG0977 Nuclear envelope prote 88.8 8.1 0.00018 37.8 12.2 82 115-196 94-191 (546)
44 PRK02224 chromosome segregatio 88.6 26 0.00055 35.3 16.1 46 105-150 205-250 (880)
45 PF05103 DivIVA: DivIVA protei 88.5 0.14 3.1E-06 39.4 0.1 44 105-148 24-67 (131)
46 COG1579 Zn-ribbon protein, pos 88.5 15 0.00033 32.2 12.7 33 110-142 35-67 (239)
47 KOG3232 Vacuolar assembly/sort 88.3 15 0.00032 31.2 12.1 54 118-171 7-60 (203)
48 PF00769 ERM: Ezrin/radixin/mo 88.2 17 0.00036 31.7 13.0 53 102-154 8-60 (246)
49 TIGR03185 DNA_S_dndD DNA sulfu 87.9 29 0.00063 34.1 15.7 29 165-193 260-288 (650)
50 PRK06569 F0F1 ATP synthase sub 87.9 14 0.0003 30.4 14.3 38 109-146 44-81 (155)
51 KOG0994 Extracellular matrix g 87.9 21 0.00046 38.2 14.9 58 140-197 1572-1635(1758)
52 KOG1656 Protein involved in gl 87.8 13 0.00028 32.2 11.5 37 158-194 59-95 (221)
53 KOG0971 Microtubule-associated 87.6 9.9 0.00021 39.5 12.3 94 90-185 380-473 (1243)
54 smart00685 DM14 Repeats in fly 87.0 3.2 7E-05 28.9 6.2 44 137-180 2-45 (59)
55 TIGR02977 phageshock_pspA phag 87.0 18 0.00039 30.7 12.4 90 104-198 36-130 (219)
56 PRK12704 phosphodiesterase; Pr 87.0 28 0.0006 33.7 14.6 51 99-149 39-90 (520)
57 PRK00409 recombination and DNA 86.9 20 0.00043 36.4 14.1 56 78-133 503-561 (782)
58 PF08317 Spc7: Spc7 kinetochor 86.5 21 0.00045 32.2 12.9 57 91-147 148-204 (325)
59 TIGR02169 SMC_prok_A chromosom 86.5 36 0.00078 34.7 15.9 10 60-69 644-653 (1164)
60 PRK08476 F0F1 ATP synthase sub 86.4 15 0.00032 29.2 14.0 49 102-150 34-82 (141)
61 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.5 16 0.00034 28.7 15.1 91 106-197 38-128 (132)
62 TIGR00606 rad50 rad50. This fa 85.3 19 0.00042 38.3 13.7 33 165-197 879-911 (1311)
63 PRK10698 phage shock protein P 85.1 23 0.00051 30.3 12.5 88 106-198 38-130 (222)
64 PRK14472 F0F1 ATP synthase sub 85.1 19 0.00042 29.3 14.3 25 102-126 66-90 (175)
65 TIGR02473 flagell_FliJ flagell 84.9 15 0.00033 28.1 15.0 50 108-157 8-57 (141)
66 PRK09343 prefoldin subunit bet 84.9 17 0.00036 28.4 11.7 96 104-199 5-110 (121)
67 PRK09039 hypothetical protein; 84.5 32 0.0007 31.4 14.1 29 109-137 77-105 (343)
68 KOG0161 Myosin class II heavy 84.4 47 0.001 37.3 16.2 118 77-194 1290-1413(1930)
69 PRK14475 F0F1 ATP synthase sub 84.2 21 0.00045 29.0 14.2 48 80-127 33-83 (167)
70 PRK00106 hypothetical protein; 83.9 38 0.00082 33.1 14.0 32 91-122 45-77 (535)
71 smart00502 BBC B-Box C-termina 83.9 15 0.00032 27.1 13.7 92 104-195 5-100 (127)
72 PF05546 She9_MDM33: She9 / Md 83.4 15 0.00032 31.7 9.8 94 94-197 34-129 (207)
73 PF12128 DUF3584: Protein of u 83.3 36 0.00077 36.1 14.5 58 101-158 623-680 (1201)
74 PF04156 IncA: IncA protein; 83.3 23 0.0005 28.8 13.8 35 163-197 154-188 (191)
75 PF13851 GAS: Growth-arrest sp 83.3 27 0.00058 29.6 15.3 114 80-195 8-121 (201)
76 PF06008 Laminin_I: Laminin Do 83.1 30 0.00065 30.0 12.0 50 108-157 26-75 (264)
77 TIGR01069 mutS2 MutS2 family p 82.9 30 0.00066 35.1 13.4 9 78-86 498-506 (771)
78 TIGR02231 conserved hypothetic 82.8 26 0.00057 33.4 12.4 30 107-136 72-101 (525)
79 TIGR03545 conserved hypothetic 82.8 20 0.00044 35.0 11.7 57 95-152 146-202 (555)
80 PF06156 DUF972: Protein of un 82.7 6 0.00013 30.5 6.6 63 102-164 11-81 (107)
81 PF12325 TMF_TATA_bd: TATA ele 82.6 22 0.00047 28.0 12.5 41 106-146 23-63 (120)
82 TIGR02338 gimC_beta prefoldin, 82.4 19 0.00042 27.3 12.2 92 108-199 5-106 (110)
83 PHA02562 46 endonuclease subun 82.4 33 0.00071 32.4 12.8 16 134-149 358-373 (562)
84 PF03148 Tektin: Tektin family 81.9 43 0.00094 31.0 16.1 119 78-196 223-353 (384)
85 PRK03918 chromosome segregatio 81.8 60 0.0013 32.5 16.0 17 78-94 125-141 (880)
86 COG1579 Zn-ribbon protein, pos 81.7 36 0.00078 29.9 16.9 41 107-147 39-79 (239)
87 KOG2391 Vacuolar sorting prote 81.7 45 0.00097 31.0 16.3 110 32-158 169-284 (365)
88 PRK13428 F0F1 ATP synthase sub 81.5 49 0.0011 31.3 14.1 50 79-128 23-75 (445)
89 PRK06569 F0F1 ATP synthase sub 81.5 28 0.00061 28.6 13.7 104 78-184 31-138 (155)
90 PRK13460 F0F1 ATP synthase sub 81.0 28 0.00062 28.3 13.2 14 132-145 73-86 (173)
91 PRK06231 F0F1 ATP synthase sub 80.5 34 0.00074 28.9 14.2 18 104-121 98-115 (205)
92 TIGR01144 ATP_synt_b ATP synth 80.4 26 0.00056 27.4 14.2 49 78-126 16-67 (147)
93 PRK05431 seryl-tRNA synthetase 80.3 33 0.00071 32.2 11.8 71 122-194 30-100 (425)
94 PF10211 Ax_dynein_light: Axon 80.2 34 0.00073 28.7 14.7 63 123-189 123-185 (189)
95 KOG0977 Nuclear envelope prote 79.8 54 0.0012 32.2 13.3 43 102-144 88-130 (546)
96 TIGR00414 serS seryl-tRNA synt 79.7 44 0.00095 31.3 12.5 34 162-195 71-104 (418)
97 COG4372 Uncharacterized protei 79.6 58 0.0013 31.0 15.4 50 102-151 119-168 (499)
98 TIGR01069 mutS2 MutS2 family p 79.4 50 0.0011 33.5 13.5 49 103-151 512-560 (771)
99 PF09730 BicD: Microtubule-ass 79.2 77 0.0017 32.2 14.5 61 91-151 19-79 (717)
100 KOG0249 LAR-interacting protei 79.1 19 0.00041 36.6 10.1 33 164-196 213-245 (916)
101 PF02050 FliJ: Flagellar FliJ 79.0 22 0.00047 25.7 11.3 77 117-194 2-79 (123)
102 KOG0161 Myosin class II heavy 79.0 71 0.0015 36.0 15.2 66 86-151 906-974 (1930)
103 TIGR03752 conj_TIGR03752 integ 79.0 32 0.00069 33.2 11.3 88 95-186 55-142 (472)
104 PF00038 Filament: Intermediat 78.9 44 0.00096 29.2 15.7 64 86-149 174-238 (312)
105 PF02403 Seryl_tRNA_N: Seryl-t 78.9 24 0.00053 26.2 9.4 70 123-194 32-101 (108)
106 PRK13461 F0F1 ATP synthase sub 78.8 31 0.00068 27.5 14.1 48 79-126 27-77 (159)
107 KOG0250 DNA repair protein RAD 78.8 51 0.0011 34.8 13.4 38 111-148 349-386 (1074)
108 KOG0933 Structural maintenance 78.7 78 0.0017 33.5 14.5 92 106-197 748-852 (1174)
109 PRK14473 F0F1 ATP synthase sub 78.7 32 0.0007 27.6 14.0 22 103-124 57-78 (164)
110 PF03962 Mnd1: Mnd1 family; I 78.5 32 0.00069 28.8 10.2 21 165-185 108-128 (188)
111 COG1566 EmrA Multidrug resista 78.4 24 0.00052 32.6 10.1 22 106-127 105-126 (352)
112 PRK06568 F0F1 ATP synthase sub 78.3 36 0.00078 27.9 14.3 50 102-151 31-80 (154)
113 PRK04863 mukB cell division pr 78.2 73 0.0016 35.0 14.9 98 100-197 986-1104(1486)
114 PRK11020 hypothetical protein; 78.1 32 0.00069 27.2 9.9 54 132-185 3-56 (118)
115 PF04111 APG6: Autophagy prote 78.1 53 0.0011 29.7 12.7 89 105-198 42-130 (314)
116 KOG0996 Structural maintenance 78.1 55 0.0012 35.1 13.4 45 105-149 805-849 (1293)
117 CHL00019 atpF ATP synthase CF0 78.0 37 0.00081 27.9 14.1 18 104-121 74-91 (184)
118 PRK07720 fliJ flagellar biosyn 77.7 32 0.0007 27.0 13.6 79 110-194 13-91 (146)
119 COG1196 Smc Chromosome segrega 77.6 55 0.0012 34.6 13.6 33 165-197 968-1000(1163)
120 PF05278 PEARLI-4: Arabidopsis 77.5 53 0.0012 29.4 12.4 25 169-193 237-261 (269)
121 COG1566 EmrA Multidrug resista 77.3 47 0.001 30.8 11.6 12 142-153 132-143 (352)
122 PRK00409 recombination and DNA 77.2 60 0.0013 33.0 13.3 80 101-180 515-594 (782)
123 PF12777 MT: Microtubule-bindi 77.1 26 0.00057 31.8 9.9 35 161-195 69-103 (344)
124 KOG0980 Actin-binding protein 77.0 57 0.0012 33.9 12.9 50 107-156 488-537 (980)
125 COG0711 AtpF F0F1-type ATP syn 76.9 38 0.00083 27.5 14.0 51 102-152 33-83 (161)
126 PF12718 Tropomyosin_1: Tropom 76.8 37 0.0008 27.2 13.1 24 172-195 113-136 (143)
127 PRK09174 F0F1 ATP synthase sub 76.7 46 0.00099 28.2 14.6 51 78-128 74-127 (204)
128 TIGR00998 8a0101 efflux pump m 76.4 50 0.0011 28.9 11.3 7 188-194 193-199 (334)
129 PRK13454 F0F1 ATP synthase sub 75.9 44 0.00095 27.6 14.0 51 79-129 53-106 (181)
130 PRK13729 conjugal transfer pil 75.8 8.5 0.00018 37.0 6.6 44 107-150 77-120 (475)
131 PRK14471 F0F1 ATP synthase sub 75.6 40 0.00087 27.0 14.1 49 78-126 29-80 (164)
132 PF00430 ATP-synt_B: ATP synth 75.3 16 0.00036 27.6 7.1 33 115-147 39-71 (132)
133 PRK10361 DNA recombination pro 75.3 82 0.0018 30.5 13.8 85 110-194 64-160 (475)
134 PLN02718 Probable galacturonos 75.3 8.8 0.00019 37.9 6.7 95 99-197 158-252 (603)
135 TIGR02680 conserved hypothetic 75.2 1.3E+02 0.0028 32.6 16.1 43 108-150 278-320 (1353)
136 PF05276 SH3BP5: SH3 domain-bi 74.9 58 0.0013 28.6 13.9 91 98-197 115-207 (239)
137 PRK00888 ftsB cell division pr 74.6 16 0.00034 27.9 6.7 47 107-153 28-74 (105)
138 COG2433 Uncharacterized conser 74.6 69 0.0015 32.0 12.4 86 103-197 419-504 (652)
139 KOG4673 Transcription factor T 74.5 1E+02 0.0023 31.5 13.7 77 76-152 473-555 (961)
140 PF05529 Bap31: B-cell recepto 74.4 45 0.00098 27.4 9.9 26 170-195 164-189 (192)
141 KOG0804 Cytoplasmic Zn-finger 74.3 87 0.0019 30.3 15.3 105 88-193 339-447 (493)
142 TIGR03007 pepcterm_ChnLen poly 74.0 78 0.0017 29.6 12.5 66 128-197 169-234 (498)
143 PF05622 HOOK: HOOK protein; 73.7 1.1 2.3E-05 44.6 0.0 93 103-195 243-339 (713)
144 PF06005 DUF904: Protein of un 73.5 31 0.00067 24.7 8.8 48 101-155 20-67 (72)
145 PF14662 CCDC155: Coiled-coil 73.3 58 0.0013 27.8 13.3 58 90-151 27-84 (193)
146 TIGR02231 conserved hypothetic 73.2 61 0.0013 30.9 11.8 36 101-136 73-108 (525)
147 PRK14474 F0F1 ATP synthase sub 73.1 63 0.0014 28.2 14.3 22 136-157 92-113 (250)
148 CHL00118 atpG ATP synthase CF0 72.9 47 0.001 26.6 14.6 49 78-126 43-94 (156)
149 KOG0996 Structural maintenance 72.8 1.1E+02 0.0025 32.8 14.1 85 104-193 919-1003(1293)
150 PF00261 Tropomyosin: Tropomyo 72.4 62 0.0013 27.7 15.4 17 130-146 144-160 (237)
151 PRK08475 F0F1 ATP synthase sub 72.0 53 0.0011 26.8 11.3 61 99-159 45-106 (167)
152 KOG0796 Spliceosome subunit [R 71.9 82 0.0018 28.9 12.6 75 100-174 84-162 (319)
153 PF11932 DUF3450: Protein of u 71.8 65 0.0014 27.7 11.3 33 116-148 38-70 (251)
154 TIGR02338 gimC_beta prefoldin, 71.8 7.5 0.00016 29.6 4.3 12 60-71 48-59 (110)
155 PRK07353 F0F1 ATP synthase sub 71.5 45 0.00098 25.8 12.8 54 102-155 32-85 (140)
156 TIGR01843 type_I_hlyD type I s 71.1 78 0.0017 28.4 16.0 18 177-194 249-266 (423)
157 PRK13428 F0F1 ATP synthase sub 71.0 96 0.0021 29.4 14.3 55 102-156 28-82 (445)
158 PRK14472 F0F1 ATP synthase sub 70.7 56 0.0012 26.6 14.3 50 102-151 45-94 (175)
159 PRK10884 SH3 domain-containing 70.2 69 0.0015 27.4 11.6 18 109-126 96-113 (206)
160 PF06810 Phage_GP20: Phage min 70.1 58 0.0013 26.5 10.7 75 106-185 6-80 (155)
161 PRK13169 DNA replication intia 70.1 18 0.00039 28.2 6.1 62 102-163 11-77 (110)
162 KOG2685 Cystoskeletal protein 70.0 1E+02 0.0022 29.3 13.7 118 78-195 250-379 (421)
163 PRK01773 hscB co-chaperone Hsc 69.4 64 0.0014 26.7 11.1 52 132-183 116-167 (173)
164 TIGR03185 DNA_S_dndD DNA sulfu 69.2 1.2E+02 0.0026 29.8 14.1 44 107-150 422-465 (650)
165 COG0172 SerS Seryl-tRNA synthe 69.1 63 0.0014 30.8 10.6 71 125-196 34-104 (429)
166 PF12718 Tropomyosin_1: Tropom 69.1 58 0.0013 26.1 14.8 48 103-150 18-65 (143)
167 TIGR03321 alt_F1F0_F0_B altern 68.9 76 0.0016 27.3 13.4 81 79-159 27-115 (246)
168 PRK11281 hypothetical protein; 68.8 62 0.0013 34.4 11.5 93 102-194 59-155 (1113)
169 PF09325 Vps5: Vps5 C terminal 68.6 67 0.0015 26.6 13.5 57 127-183 128-186 (236)
170 PF14362 DUF4407: Domain of un 68.6 83 0.0018 27.7 14.1 72 120-191 135-213 (301)
171 TIGR03017 EpsF chain length de 68.4 92 0.002 28.6 11.5 13 111-123 259-271 (444)
172 CHL00019 atpF ATP synthase CF0 68.4 65 0.0014 26.4 13.7 52 102-153 51-102 (184)
173 PF05008 V-SNARE: Vesicle tran 68.2 38 0.00083 23.7 9.2 72 79-150 1-77 (79)
174 cd07623 BAR_SNX1_2 The Bin/Amp 68.2 75 0.0016 27.0 14.4 23 78-100 78-100 (224)
175 PF15450 DUF4631: Domain of un 68.1 87 0.0019 30.6 11.4 63 102-164 95-164 (531)
176 PRK13455 F0F1 ATP synthase sub 67.9 67 0.0014 26.3 13.6 26 102-127 75-100 (184)
177 PRK07353 F0F1 ATP synthase sub 67.4 56 0.0012 25.3 14.2 24 102-125 53-76 (140)
178 KOG1656 Protein involved in gl 67.4 84 0.0018 27.3 12.3 74 76-149 1-90 (221)
179 TIGR00293 prefoldin, archaeal 67.3 53 0.0012 25.0 8.3 30 168-197 94-123 (126)
180 PRK03947 prefoldin subunit alp 67.3 58 0.0013 25.4 13.7 92 105-198 5-132 (140)
181 PRK13453 F0F1 ATP synthase sub 67.2 68 0.0015 26.2 14.0 55 102-156 45-99 (173)
182 PF04012 PspA_IM30: PspA/IM30 67.1 74 0.0016 26.6 12.7 95 101-195 32-133 (221)
183 PRK09546 zntB zinc transporter 67.0 93 0.002 27.6 12.4 95 87-181 145-243 (324)
184 PHA02571 a-gt.4 hypothetical p 66.9 59 0.0013 25.4 10.1 73 95-172 3-75 (109)
185 PF06120 Phage_HK97_TLTM: Tail 66.8 1E+02 0.0022 28.0 11.4 34 104-137 72-105 (301)
186 PLN02678 seryl-tRNA synthetase 66.8 1.2E+02 0.0026 28.9 12.9 33 163-195 74-106 (448)
187 PF09730 BicD: Microtubule-ass 66.7 1.4E+02 0.003 30.5 12.9 99 81-179 608-715 (717)
188 TIGR01005 eps_transp_fam exopo 66.4 1.4E+02 0.0031 29.6 13.5 40 106-145 288-334 (754)
189 PF05667 DUF812: Protein of un 66.4 1E+02 0.0022 30.5 11.9 40 105-144 327-366 (594)
190 PF06120 Phage_HK97_TLTM: Tail 66.4 1E+02 0.0022 28.0 12.5 41 108-148 69-109 (301)
191 PF08172 CASP_C: CASP C termin 66.3 29 0.00063 30.5 7.4 34 109-142 2-35 (248)
192 PRK05759 F0F1 ATP synthase sub 66.2 63 0.0014 25.4 14.1 46 79-124 26-74 (156)
193 PF05667 DUF812: Protein of un 66.1 1.4E+02 0.0031 29.5 13.7 47 102-148 331-377 (594)
194 PF05335 DUF745: Protein of un 66.1 81 0.0018 26.7 14.3 51 102-152 70-120 (188)
195 COG0711 AtpF F0F1-type ATP syn 65.5 72 0.0016 25.9 14.9 50 79-128 28-80 (161)
196 PF09849 DUF2076: Uncharacteri 65.3 20 0.00043 31.6 6.1 48 98-145 24-73 (247)
197 PRK13460 F0F1 ATP synthase sub 65.1 74 0.0016 25.8 14.0 48 79-126 38-88 (173)
198 PF07743 HSCB_C: HSCB C-termin 65.1 45 0.00097 23.3 9.1 75 98-179 2-76 (78)
199 PF05055 DUF677: Protein of un 65.0 1.1E+02 0.0024 28.1 11.2 79 110-191 240-319 (336)
200 KOG4360 Uncharacterized coiled 64.8 1.5E+02 0.0032 29.2 13.1 94 103-196 202-297 (596)
201 PRK10476 multidrug resistance 64.6 78 0.0017 28.2 10.0 17 181-197 190-206 (346)
202 PRK15136 multidrug efflux syst 64.5 73 0.0016 29.2 10.0 11 108-118 101-111 (390)
203 PRK14473 F0F1 ATP synthase sub 64.5 73 0.0016 25.5 14.3 59 99-157 31-90 (164)
204 TIGR01005 eps_transp_fam exopo 64.1 1.2E+02 0.0025 30.3 12.0 19 132-150 350-368 (754)
205 PF05103 DivIVA: DivIVA protei 64.1 4.9 0.00011 30.7 1.9 65 88-152 21-85 (131)
206 KOG1937 Uncharacterized conser 64.0 1.5E+02 0.0032 28.9 12.2 67 119-187 254-320 (521)
207 PF12325 TMF_TATA_bd: TATA ele 64.0 70 0.0015 25.1 13.2 75 73-155 12-89 (120)
208 PRK10476 multidrug resistance 63.7 1.1E+02 0.0024 27.3 10.8 8 177-184 193-200 (346)
209 COG2433 Uncharacterized conser 63.7 1.7E+02 0.0036 29.4 14.2 33 116-148 425-457 (652)
210 KOG0995 Centromere-associated 63.6 1.6E+02 0.0035 29.2 15.9 61 101-162 261-321 (581)
211 TIGR03545 conserved hypothetic 63.4 97 0.0021 30.4 11.0 57 89-149 150-206 (555)
212 PF11559 ADIP: Afadin- and alp 63.3 73 0.0016 25.1 14.1 92 102-197 55-149 (151)
213 PF10046 BLOC1_2: Biogenesis o 63.0 61 0.0013 24.2 13.6 94 78-198 4-97 (99)
214 PRK07737 fliD flagellar cappin 62.8 71 0.0015 30.7 9.9 15 77-91 414-428 (501)
215 KOG1916 Nuclear protein, conta 62.8 96 0.0021 32.8 11.0 95 90-184 860-956 (1283)
216 PF07888 CALCOCO1: Calcium bin 62.7 1.6E+02 0.0035 29.0 13.8 24 165-188 218-241 (546)
217 PRK05759 F0F1 ATP synthase sub 62.7 74 0.0016 25.0 12.8 51 102-152 31-81 (156)
218 TIGR02302 aProt_lowcomp conser 62.6 1.1E+02 0.0023 31.8 11.5 57 142-198 569-633 (851)
219 PF05384 DegS: Sensor protein 62.2 89 0.0019 25.8 15.6 70 104-177 25-94 (159)
220 PF10241 KxDL: Uncharacterized 62.1 61 0.0013 23.8 8.3 62 91-152 21-82 (88)
221 PF06632 XRCC4: DNA double-str 62.0 1.3E+02 0.0029 27.7 13.9 94 94-191 118-211 (342)
222 cd07666 BAR_SNX7 The Bin/Amphi 62.0 1.1E+02 0.0024 26.8 13.7 52 137-188 180-231 (243)
223 PF10191 COG7: Golgi complex c 62.0 1.9E+02 0.0041 29.4 13.6 17 104-120 82-98 (766)
224 PF14662 CCDC155: Coiled-coil 62.0 1E+02 0.0022 26.4 14.0 52 101-152 62-113 (193)
225 PF10498 IFT57: Intra-flagella 61.9 64 0.0014 29.9 9.1 65 86-150 246-310 (359)
226 PF09486 HrpB7: Bacterial type 61.5 92 0.002 25.7 9.6 73 94-166 81-153 (158)
227 PRK08032 fliD flagellar cappin 61.4 62 0.0013 30.7 9.1 25 128-152 407-431 (462)
228 PLN02829 Probable galacturonos 61.4 25 0.00055 35.0 6.6 92 102-197 179-270 (639)
229 TIGR03007 pepcterm_ChnLen poly 61.3 1.4E+02 0.0031 27.9 12.6 74 77-151 251-348 (498)
230 PF13779 DUF4175: Domain of un 61.3 90 0.002 32.1 10.7 97 102-198 492-598 (820)
231 PRK06568 F0F1 ATP synthase sub 61.3 90 0.0019 25.5 14.0 53 79-131 26-81 (154)
232 KOG3229 Vacuolar sorting prote 60.7 1.1E+02 0.0025 26.6 12.3 54 128-181 26-79 (227)
233 PRK11578 macrolide transporter 60.7 1.3E+02 0.0028 27.1 13.2 35 104-138 97-131 (370)
234 KOG4403 Cell surface glycoprot 60.3 1.7E+02 0.0037 28.4 12.0 111 85-196 239-376 (575)
235 TIGR03825 FliH_bacil flagellar 59.5 1.2E+02 0.0025 26.3 12.6 7 101-107 43-49 (255)
236 PF11932 DUF3450: Protein of u 59.5 1.1E+02 0.0025 26.2 11.1 52 102-153 45-96 (251)
237 PRK10869 recombination and rep 59.4 1.4E+02 0.0031 29.0 11.4 30 125-154 304-333 (553)
238 COG2882 FliJ Flagellar biosynt 59.4 97 0.0021 25.3 12.8 81 111-197 14-94 (148)
239 PF01544 CorA: CorA-like Mg2+ 59.2 1.1E+02 0.0024 25.8 10.6 59 131-189 155-221 (292)
240 PF14257 DUF4349: Domain of un 59.2 45 0.00097 28.8 7.3 32 167-198 162-193 (262)
241 smart00503 SynN Syntaxin N-ter 59.1 69 0.0015 23.5 12.3 30 167-196 86-115 (117)
242 TIGR00606 rad50 rad50. This fa 59.1 2.6E+02 0.0056 30.1 16.5 17 142-158 952-968 (1311)
243 PRK08453 fliD flagellar cappin 59.0 66 0.0014 32.4 9.1 71 76-149 598-668 (673)
244 PF06637 PV-1: PV-1 protein (P 59.0 1.7E+02 0.0036 27.9 14.5 99 75-180 279-380 (442)
245 KOG1003 Actin filament-coating 58.9 1.2E+02 0.0026 26.2 13.1 90 103-197 106-195 (205)
246 PF05529 Bap31: B-cell recepto 58.9 1E+02 0.0022 25.3 9.1 25 172-196 159-183 (192)
247 PRK10807 paraquat-inducible pr 58.3 1.3E+02 0.0028 29.4 10.8 46 74-126 410-456 (547)
248 PF10174 Cast: RIM-binding pro 58.3 1.5E+02 0.0032 30.4 11.6 53 90-142 229-281 (775)
249 PF03961 DUF342: Protein of un 58.2 66 0.0014 30.2 8.7 35 159-193 374-408 (451)
250 PRK07352 F0F1 ATP synthase sub 58.1 1E+02 0.0022 25.0 16.7 50 102-151 46-95 (174)
251 PRK13455 F0F1 ATP synthase sub 58.0 1E+02 0.0022 25.2 14.2 48 102-149 54-101 (184)
252 PF05010 TACC: Transforming ac 58.0 1.2E+02 0.0026 26.0 13.3 96 104-199 88-186 (207)
253 PRK09173 F0F1 ATP synthase sub 57.9 95 0.0021 24.7 14.2 24 102-125 50-73 (159)
254 PF13094 CENP-Q: CENP-Q, a CEN 57.6 97 0.0021 24.8 8.8 49 110-158 45-93 (160)
255 PF10186 Atg14: UV radiation r 57.5 1.2E+02 0.0026 25.8 16.4 67 85-151 38-108 (302)
256 PRK08032 fliD flagellar cappin 57.4 1.8E+02 0.0038 27.6 11.5 7 79-85 322-328 (462)
257 cd00632 Prefoldin_beta Prefold 56.9 80 0.0017 23.5 11.0 86 113-198 6-101 (105)
258 smart00502 BBC B-Box C-termina 56.5 76 0.0016 23.2 13.4 55 134-188 46-100 (127)
259 PRK15362 pathogenicity island 56.2 61 0.0013 31.2 8.0 83 76-158 60-151 (473)
260 PF05262 Borrelia_P83: Borreli 55.7 2E+02 0.0044 27.9 11.9 14 102-115 199-212 (489)
261 KOG0964 Structural maintenance 55.6 2.5E+02 0.0055 29.9 12.6 26 170-195 338-363 (1200)
262 PLN02742 Probable galacturonos 55.2 69 0.0015 31.4 8.4 39 108-148 76-114 (534)
263 PF13863 DUF4200: Domain of un 55.2 89 0.0019 23.6 14.1 37 162-198 69-105 (126)
264 TIGR03017 EpsF chain length de 55.2 1.7E+02 0.0037 26.8 11.9 19 102-120 257-275 (444)
265 KOG4674 Uncharacterized conser 55.0 3.6E+02 0.0078 30.5 16.0 78 75-156 1223-1300(1822)
266 COG4191 Signal transduction hi 54.8 2.3E+02 0.005 28.3 13.4 53 135-187 394-446 (603)
267 PRK05689 fliJ flagellar biosyn 54.7 1E+02 0.0022 24.1 14.9 50 108-157 11-60 (147)
268 PF07246 Phlebovirus_NSM: Phle 54.6 1.6E+02 0.0035 26.4 10.3 89 98-197 151-239 (264)
269 PF15254 CCDC14: Coiled-coil d 54.2 1.5E+02 0.0033 30.5 10.7 96 102-197 404-517 (861)
270 PF09726 Macoilin: Transmembra 54.1 1.5E+02 0.0033 29.9 10.8 66 104-169 430-496 (697)
271 TIGR01000 bacteriocin_acc bact 54.1 1.9E+02 0.0041 27.0 15.3 27 171-197 288-314 (457)
272 PLN02910 polygalacturonate 4-a 53.8 44 0.00095 33.5 6.8 92 102-197 193-284 (657)
273 PF09727 CortBP2: Cortactin-bi 53.7 1.4E+02 0.0031 25.4 13.6 93 97-197 79-171 (192)
274 PF04977 DivIC: Septum formati 53.5 65 0.0014 22.1 6.1 43 109-151 20-62 (80)
275 PRK12472 hypothetical protein; 53.5 2.3E+02 0.0049 27.7 11.6 72 116-192 214-287 (508)
276 KOG2264 Exostosin EXT1L [Signa 53.5 1.8E+02 0.0039 29.4 10.8 40 108-147 81-120 (907)
277 PF12761 End3: Actin cytoskele 53.4 1.4E+02 0.0031 25.5 9.9 24 101-124 98-121 (195)
278 TIGR03321 alt_F1F0_F0_B altern 53.3 1.5E+02 0.0032 25.5 14.3 57 99-155 28-85 (246)
279 PRK13453 F0F1 ATP synthase sub 53.2 1.2E+02 0.0027 24.6 14.6 50 79-128 40-92 (173)
280 TIGR02971 heterocyst_DevB ABC 53.1 1.6E+02 0.0034 25.8 11.0 33 116-148 93-125 (327)
281 TIGR01010 BexC_CtrB_KpsE polys 53.0 1.7E+02 0.0038 26.3 14.2 49 99-149 141-192 (362)
282 PF10392 COG5: Golgi transport 52.6 1.1E+02 0.0024 23.8 9.5 18 176-193 74-91 (132)
283 COG0598 CorA Mg2+ and Co2+ tra 52.4 1.7E+02 0.0037 26.1 11.2 37 155-191 215-251 (322)
284 KOG4571 Activating transcripti 52.4 1.2E+02 0.0026 27.6 8.8 60 131-198 227-286 (294)
285 PF09325 Vps5: Vps5 C terminal 52.2 1.4E+02 0.0029 24.8 12.5 68 76-147 2-72 (236)
286 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.1 1.1E+02 0.0024 23.8 12.2 70 126-196 51-120 (132)
287 PF10211 Ax_dynein_light: Axon 52.1 1.4E+02 0.003 24.9 10.5 66 129-198 122-187 (189)
288 PRK04654 sec-independent trans 51.9 1.3E+02 0.0029 26.1 8.8 17 78-94 35-51 (214)
289 PF11559 ADIP: Afadin- and alp 51.9 1.2E+02 0.0025 24.0 14.2 81 101-189 68-148 (151)
290 PRK07352 F0F1 ATP synthase sub 51.8 1.3E+02 0.0028 24.4 15.8 65 94-158 59-128 (174)
291 PF13763 DUF4167: Domain of un 51.5 97 0.0021 22.9 6.9 43 139-181 35-77 (80)
292 TIGR01010 BexC_CtrB_KpsE polys 51.3 1.8E+02 0.004 26.1 10.4 28 99-126 170-197 (362)
293 PRK06798 fliD flagellar cappin 51.3 1.3E+02 0.0027 28.6 9.3 26 126-151 378-403 (440)
294 PF15294 Leu_zip: Leucine zipp 51.2 1.9E+02 0.0041 26.1 11.9 49 100-148 126-174 (278)
295 PRK04778 septation ring format 51.2 2.4E+02 0.0052 27.4 14.9 31 163-193 379-409 (569)
296 cd07673 F-BAR_FCHO2 The F-BAR 51.0 1.7E+02 0.0038 25.7 13.9 21 74-94 60-80 (269)
297 PF14282 FlxA: FlxA-like prote 50.9 1.1E+02 0.0023 23.2 8.2 24 167-190 51-74 (106)
298 KOG3915 Transcription regulato 50.6 1.9E+02 0.0041 28.3 10.3 80 78-157 500-582 (641)
299 PF10146 zf-C4H2: Zinc finger- 50.4 1.7E+02 0.0037 25.4 14.2 61 124-196 43-103 (230)
300 PRK06669 fliH flagellar assemb 50.1 1.8E+02 0.0038 25.5 14.3 49 102-150 70-119 (281)
301 PF04888 SseC: Secretion syste 50.0 1.1E+02 0.0024 26.9 8.3 24 134-157 33-56 (306)
302 KOG0946 ER-Golgi vesicle-tethe 50.0 2.9E+02 0.0064 28.8 11.9 72 124-195 748-827 (970)
303 PF10481 CENP-F_N: Cenp-F N-te 49.9 2E+02 0.0044 26.1 12.0 28 171-198 99-126 (307)
304 KOG0982 Centrosomal protein Nu 49.9 2.5E+02 0.0054 27.2 12.7 74 122-195 245-325 (502)
305 PF07195 FliD_C: Flagellar hoo 49.9 1.3E+02 0.0027 25.7 8.5 67 77-146 171-237 (239)
306 PRK06798 fliD flagellar cappin 49.7 2.3E+02 0.005 26.8 10.9 9 78-86 301-309 (440)
307 COG4942 Membrane-bound metallo 49.7 2.4E+02 0.0052 26.9 15.6 8 94-101 136-143 (420)
308 COG3167 PilO Tfp pilus assembl 48.9 67 0.0015 27.7 6.4 46 152-197 51-96 (211)
309 PRK14475 F0F1 ATP synthase sub 48.6 1.4E+02 0.0031 24.0 14.2 52 102-153 37-88 (167)
310 KOG0933 Structural maintenance 48.4 3.7E+02 0.0081 28.8 13.7 82 78-162 226-307 (1174)
311 PF13514 AAA_27: AAA domain 48.4 3.5E+02 0.0076 28.5 16.3 37 161-197 236-272 (1111)
312 PF03961 DUF342: Protein of un 48.4 1.6E+02 0.0034 27.7 9.5 27 170-196 378-404 (451)
313 PRK13461 F0F1 ATP synthase sub 48.3 1.4E+02 0.003 23.7 14.0 51 102-152 32-82 (159)
314 cd07598 BAR_FAM92 The Bin/Amph 48.2 1.7E+02 0.0038 24.9 13.3 39 78-116 69-107 (211)
315 PF01920 Prefoldin_2: Prefoldi 48.2 1E+02 0.0022 22.2 12.1 89 111-199 3-101 (106)
316 PF07888 CALCOCO1: Calcium bin 48.2 2.8E+02 0.0062 27.3 13.8 21 103-123 161-181 (546)
317 PF07794 DUF1633: Protein of u 48.2 2.3E+02 0.005 28.1 10.5 58 102-163 600-657 (790)
318 PRK01356 hscB co-chaperone Hsc 48.1 1.5E+02 0.0033 24.2 10.4 50 132-181 111-160 (166)
319 PRK06975 bifunctional uroporph 47.7 1.4E+02 0.0031 29.6 9.5 32 163-194 381-412 (656)
320 cd07662 BAR_SNX6 The Bin/Amphi 47.7 1.9E+02 0.0041 25.2 13.9 118 78-197 81-214 (218)
321 COG0216 PrfA Protein chain rel 47.6 2.4E+02 0.0053 26.4 12.3 98 76-185 3-101 (363)
322 PF04568 IATP: Mitochondrial A 47.1 69 0.0015 24.5 5.7 21 104-124 62-83 (100)
323 PF10168 Nup88: Nuclear pore c 46.6 3.3E+02 0.0072 27.6 15.0 90 108-198 560-663 (717)
324 PF04380 BMFP: Membrane fusoge 46.5 1.1E+02 0.0024 22.0 7.7 16 78-93 7-22 (79)
325 PLN02943 aminoacyl-tRNA ligase 46.0 91 0.002 32.5 8.1 69 125-198 887-955 (958)
326 TIGR00634 recN DNA repair prot 45.7 2.6E+02 0.0057 27.0 10.8 44 104-147 159-202 (563)
327 PF04100 Vps53_N: Vps53-like, 45.6 1.7E+02 0.0037 27.1 9.2 32 159-190 97-128 (383)
328 PRK10803 tol-pal system protei 45.5 1.2E+02 0.0025 26.6 7.7 44 104-147 59-102 (263)
329 PF14346 DUF4398: Domain of un 45.3 1.2E+02 0.0026 22.3 10.3 30 142-171 44-73 (103)
330 PRK15178 Vi polysaccharide exp 45.2 2.8E+02 0.0062 26.5 13.2 53 98-150 275-337 (434)
331 KOG1029 Endocytic adaptor prot 44.6 4E+02 0.0086 28.0 13.7 43 101-143 453-495 (1118)
332 PF12999 PRKCSH-like: Glucosid 44.6 1.1E+02 0.0025 25.7 7.1 10 60-69 54-63 (176)
333 PF13094 CENP-Q: CENP-Q, a CEN 44.5 1.3E+02 0.0029 24.0 7.4 45 99-143 41-85 (160)
334 PRK11519 tyrosine kinase; Prov 44.4 3.4E+02 0.0074 27.1 12.9 18 104-121 272-289 (719)
335 PF07227 DUF1423: Protein of u 44.1 3E+02 0.0066 26.5 12.2 52 114-165 351-402 (446)
336 PRK05035 electron transport co 44.1 1.9E+02 0.004 29.3 9.7 48 102-149 425-472 (695)
337 TIGR01000 bacteriocin_acc bact 44.1 2.7E+02 0.0059 26.0 12.5 27 124-150 169-195 (457)
338 PF10234 Cluap1: Clusterin-ass 44.1 2.4E+02 0.0051 25.3 13.7 58 101-159 164-221 (267)
339 PLN02769 Probable galacturonos 43.8 62 0.0013 32.4 6.2 93 99-196 174-268 (629)
340 PF15070 GOLGA2L5: Putative go 43.6 3.5E+02 0.0075 27.0 14.3 46 99-144 22-67 (617)
341 PF15066 CAGE1: Cancer-associa 43.5 3.2E+02 0.007 26.7 15.7 81 78-158 359-442 (527)
342 COG3096 MukB Uncharacterized p 43.4 2.5E+02 0.0054 29.5 10.3 85 112-199 368-467 (1480)
343 PLN02320 seryl-tRNA synthetase 42.7 2.8E+02 0.0061 27.0 10.3 32 163-194 133-164 (502)
344 PRK06231 F0F1 ATP synthase sub 42.5 2.1E+02 0.0045 24.2 13.4 51 102-152 75-125 (205)
345 PRK09173 F0F1 ATP synthase sub 42.3 1.7E+02 0.0037 23.2 14.2 48 103-150 30-77 (159)
346 COG4942 Membrane-bound metallo 42.2 3.2E+02 0.0068 26.1 15.1 50 99-148 59-108 (420)
347 cd00890 Prefoldin Prefoldin is 42.1 1.5E+02 0.0032 22.2 10.0 39 160-198 87-125 (129)
348 PF09340 NuA4: Histone acetylt 42.0 58 0.0012 23.7 4.4 30 120-149 2-31 (80)
349 PF03915 AIP3: Actin interacti 42.0 3.1E+02 0.0068 26.1 14.8 19 106-124 220-238 (424)
350 PF04568 IATP: Mitochondrial A 42.0 77 0.0017 24.2 5.2 12 186-197 88-99 (100)
351 PRK09343 prefoldin subunit bet 41.8 1.6E+02 0.0035 22.7 7.3 39 119-157 77-115 (121)
352 PF10805 DUF2730: Protein of u 41.6 1.5E+02 0.0033 22.4 7.9 63 87-149 34-101 (106)
353 PF05701 WEMBL: Weak chloropla 41.3 3.4E+02 0.0073 26.2 13.5 89 104-197 216-318 (522)
354 PRK10636 putative ABC transpor 41.1 2.8E+02 0.0061 27.2 10.4 34 161-194 599-632 (638)
355 PRK07191 flgK flagellar hook-a 40.6 3.2E+02 0.0069 25.8 10.8 54 102-158 137-190 (456)
356 PRK09915 putative outer membra 40.5 3.1E+02 0.0067 25.6 14.3 110 73-191 358-470 (488)
357 PRK07521 flgK flagellar hook-a 40.5 3.3E+02 0.0071 25.9 11.1 54 102-158 132-185 (483)
358 PF09486 HrpB7: Bacterial type 39.9 2.1E+02 0.0046 23.5 14.6 91 105-195 14-114 (158)
359 PF08614 ATG16: Autophagy prot 39.8 88 0.0019 25.9 5.8 42 106-147 102-143 (194)
360 PF11570 E2R135: Coiled-coil r 39.7 2E+02 0.0044 23.2 11.1 95 100-194 2-104 (136)
361 PF14235 DUF4337: Domain of un 39.6 2.1E+02 0.0045 23.4 9.2 65 102-166 47-120 (157)
362 COG1842 PspA Phage shock prote 39.6 2.5E+02 0.0055 24.3 12.6 38 159-196 98-135 (225)
363 PRK10780 periplasmic chaperone 39.6 2E+02 0.0043 23.1 10.7 80 98-181 29-108 (165)
364 PRK07739 flgK flagellar hook-a 39.6 3.5E+02 0.0076 25.9 13.2 70 102-176 149-218 (507)
365 PF05335 DUF745: Protein of un 39.5 2.3E+02 0.0051 23.9 13.8 63 91-153 66-128 (188)
366 PF10458 Val_tRNA-synt_C: Valy 39.5 1.3E+02 0.0027 20.7 7.8 63 126-193 3-65 (66)
367 COG3883 Uncharacterized protei 39.3 2.8E+02 0.0062 24.8 12.2 95 78-180 15-111 (265)
368 PF15290 Syntaphilin: Golgi-lo 39.3 3E+02 0.0064 25.1 9.2 62 84-149 71-132 (305)
369 PF04977 DivIC: Septum formati 39.2 94 0.002 21.2 5.1 24 172-195 22-45 (80)
370 PRK00295 hypothetical protein; 39.0 85 0.0018 22.1 4.8 25 172-196 17-41 (68)
371 PRK00736 hypothetical protein; 39.0 85 0.0018 22.1 4.8 27 171-197 16-42 (68)
372 PF08581 Tup_N: Tup N-terminal 38.6 1.5E+02 0.0034 21.5 11.5 70 109-186 7-76 (79)
373 PF05816 TelA: Toxic anion res 38.5 3E+02 0.0065 24.8 13.9 20 176-195 171-190 (333)
374 PF04728 LPP: Lipoprotein leuc 38.5 1.3E+02 0.0029 20.7 6.3 45 94-138 5-49 (56)
375 PF12072 DUF3552: Domain of un 38.5 2.3E+02 0.0051 23.6 15.5 51 100-150 36-87 (201)
376 PF07798 DUF1640: Protein of u 38.5 2.2E+02 0.0047 23.3 15.5 41 102-142 54-95 (177)
377 COG4372 Uncharacterized protei 38.5 3.7E+02 0.008 25.8 15.0 120 76-196 59-187 (499)
378 PF06320 GCN5L1: GCN5-like pro 38.5 1.9E+02 0.0041 22.6 11.3 77 117-195 37-113 (121)
379 COG1345 FliD Flagellar capping 38.5 2.9E+02 0.0062 26.7 9.7 77 73-152 396-472 (483)
380 KOG1103 Predicted coiled-coil 38.4 3.6E+02 0.0077 25.7 10.5 98 97-194 57-166 (561)
381 PF15466 DUF4635: Domain of un 38.2 63 0.0014 25.8 4.3 40 78-117 84-123 (135)
382 PF12018 DUF3508: Domain of un 37.9 2.9E+02 0.0062 24.4 10.5 38 160-197 48-85 (281)
383 PF14817 HAUS5: HAUS augmin-li 37.8 4.3E+02 0.0094 26.5 14.4 50 102-151 82-131 (632)
384 KOG4643 Uncharacterized coiled 37.6 5.5E+02 0.012 27.6 13.4 33 165-197 276-310 (1195)
385 KOG4674 Uncharacterized conser 37.5 6.7E+02 0.015 28.6 13.5 85 112-197 1045-1129(1822)
386 PF08647 BRE1: BRE1 E3 ubiquit 37.3 1.7E+02 0.0037 21.7 11.7 48 106-153 3-50 (96)
387 PF10498 IFT57: Intra-flagella 37.0 3.5E+02 0.0075 25.1 13.1 94 103-197 217-317 (359)
388 PRK06665 flgK flagellar hook-a 37.0 4.3E+02 0.0093 26.2 11.4 53 103-158 150-202 (627)
389 KOG2751 Beclin-like protein [S 37.0 3.9E+02 0.0085 25.7 13.8 83 114-196 184-268 (447)
390 cd07627 BAR_Vps5p The Bin/Amph 36.8 2.5E+02 0.0055 23.5 13.1 88 106-193 115-209 (216)
391 COG2919 Septum formation initi 36.8 1.8E+02 0.004 22.3 6.8 49 106-154 50-98 (117)
392 COG1730 GIM5 Predicted prefold 36.7 2.3E+02 0.005 23.0 8.5 18 133-150 121-138 (145)
393 PLN02939 transferase, transfer 36.6 4E+02 0.0087 28.2 10.9 53 101-153 266-319 (977)
394 PF00769 ERM: Ezrin/radixin/mo 36.6 2.9E+02 0.0062 24.0 12.5 66 97-163 17-82 (246)
395 PF07464 ApoLp-III: Apolipopho 36.5 94 0.002 25.5 5.3 95 104-198 1-98 (155)
396 PRK11556 multidrug efflux syst 36.5 3.1E+02 0.0067 25.4 9.4 11 115-125 127-137 (415)
397 PRK08724 fliD flagellar cappin 36.3 2.8E+02 0.006 28.1 9.4 20 132-151 622-641 (673)
398 PTZ00419 valyl-tRNA synthetase 36.0 1.6E+02 0.0035 30.7 8.1 67 125-196 927-993 (995)
399 PF08614 ATG16: Autophagy prot 35.8 2.5E+02 0.0055 23.2 10.2 11 159-169 175-185 (194)
400 TIGR02492 flgK_ends flagellar 35.8 3.2E+02 0.007 24.4 11.5 54 102-158 137-191 (322)
401 COG4717 Uncharacterized conser 35.8 4.9E+02 0.011 27.5 11.1 87 110-196 554-656 (984)
402 KOG4673 Transcription factor T 35.7 5.2E+02 0.011 26.8 13.5 49 149-197 391-439 (961)
403 KOG0980 Actin-binding protein 35.6 5.6E+02 0.012 27.1 14.8 18 131-148 421-438 (980)
404 TIGR02473 flagell_FliJ flagell 35.5 2E+02 0.0042 21.8 9.0 43 105-147 74-116 (141)
405 PRK04406 hypothetical protein; 35.3 1.1E+02 0.0023 22.0 4.9 18 176-193 27-44 (75)
406 PF10079 DUF2317: Uncharacteri 35.2 2.8E+02 0.006 27.2 9.1 111 84-197 383-497 (542)
407 PF11068 YlqD: YlqD protein; 35.1 2.3E+02 0.005 22.5 7.4 12 139-150 32-43 (131)
408 PRK10246 exonuclease subunit S 35.0 5.6E+02 0.012 27.0 14.3 47 109-155 713-759 (1047)
409 PF10267 Tmemb_cc2: Predicted 35.0 4E+02 0.0086 25.2 14.2 21 174-194 298-318 (395)
410 PF06152 Phage_min_cap2: Phage 34.9 1.9E+02 0.0041 26.6 7.6 43 137-179 315-357 (361)
411 PF12999 PRKCSH-like: Glucosid 34.9 2.3E+02 0.0051 23.8 7.5 16 57-72 92-110 (176)
412 PRK04325 hypothetical protein; 34.9 1.1E+02 0.0024 21.8 4.9 27 171-197 20-46 (74)
413 PF13514 AAA_27: AAA domain 34.8 5.7E+02 0.012 27.0 15.0 85 113-197 673-773 (1111)
414 TIGR00714 hscB Fe-S protein as 34.7 2.5E+02 0.0053 22.7 10.9 49 132-180 102-150 (157)
415 cd07665 BAR_SNX1 The Bin/Amphi 34.7 3.1E+02 0.0067 23.9 13.5 64 78-145 2-68 (234)
416 KOG3192 Mitochondrial J-type c 34.5 2.8E+02 0.006 23.2 9.3 72 99-180 94-165 (168)
417 KOG0976 Rho/Rac1-interacting s 34.5 5.8E+02 0.013 27.0 14.9 66 97-162 97-165 (1265)
418 TIGR01554 major_cap_HK97 phage 34.4 2.4E+02 0.0052 25.5 8.2 16 110-125 3-18 (378)
419 PRK10869 recombination and rep 34.4 4.4E+02 0.0096 25.6 11.5 42 106-147 157-198 (553)
420 PF06785 UPF0242: Uncharacteri 34.3 3.5E+02 0.0077 25.4 9.1 91 108-199 122-212 (401)
421 TIGR03495 phage_LysB phage lys 34.2 2.5E+02 0.0054 22.6 9.5 38 106-143 19-56 (135)
422 KOG3850 Predicted membrane pro 34.0 4.3E+02 0.0093 25.3 17.1 33 98-130 273-305 (455)
423 PF06160 EzrA: Septation ring 34.0 4.5E+02 0.0098 25.6 14.5 41 103-143 105-145 (560)
424 KOG0999 Microtubule-associated 33.9 5.1E+02 0.011 26.1 13.0 107 81-187 623-738 (772)
425 PRK02119 hypothetical protein; 33.8 1.2E+02 0.0026 21.6 4.9 18 176-193 25-42 (73)
426 PF04420 CHD5: CHD5-like prote 33.7 42 0.00091 27.3 2.9 42 108-149 42-88 (161)
427 PF04728 LPP: Lipoprotein leuc 33.5 1.5E+02 0.0031 20.5 5.0 13 181-193 38-50 (56)
428 KOG1029 Endocytic adaptor prot 33.5 5.9E+02 0.013 26.8 11.9 11 102-112 335-345 (1118)
429 KOG2077 JNK/SAPK-associated pr 33.4 4.9E+02 0.011 26.3 10.4 66 117-183 340-422 (832)
430 PF10146 zf-C4H2: Zinc finger- 33.2 3.3E+02 0.0071 23.7 11.8 85 89-189 19-103 (230)
431 KOG2180 Late Golgi protein sor 33.2 3.2E+02 0.0069 28.1 9.2 7 156-162 69-75 (793)
432 PF12777 MT: Microtubule-bindi 33.1 3.7E+02 0.008 24.3 11.1 50 104-153 226-275 (344)
433 PLN03188 kinesin-12 family pro 33.1 6.9E+02 0.015 27.4 13.4 99 101-199 1130-1243(1320)
434 PRK11459 multidrug resistance 33.1 4.1E+02 0.0089 24.8 14.1 108 73-191 355-467 (478)
435 PF11727 ISG65-75: Invariant s 33.1 3.4E+02 0.0075 23.9 9.9 11 90-100 57-67 (286)
436 PF08776 VASP_tetra: VASP tetr 33.0 1.4E+02 0.003 19.3 4.9 29 101-129 6-34 (40)
437 cd07652 F-BAR_Rgd1 The F-BAR ( 33.0 3.2E+02 0.0068 23.4 9.7 28 158-185 167-194 (234)
438 PF10828 DUF2570: Protein of u 32.8 2.2E+02 0.0047 21.6 9.2 65 94-158 27-91 (110)
439 PF06730 FAM92: FAM92 protein; 32.8 2.9E+02 0.0064 24.0 8.0 58 78-135 76-133 (219)
440 KOG2391 Vacuolar sorting prote 32.6 4.2E+02 0.0092 24.8 12.7 61 78-138 215-278 (365)
441 TIGR02209 ftsL_broad cell divi 32.5 1.8E+02 0.0038 20.4 7.2 34 107-140 25-58 (85)
442 PF09731 Mitofilin: Mitochondr 32.4 4.6E+02 0.01 25.2 15.3 121 78-200 274-404 (582)
443 PF02994 Transposase_22: L1 tr 32.1 2.1E+02 0.0045 26.5 7.4 49 104-152 142-190 (370)
444 TIGR01837 PHA_granule_1 poly(h 31.9 2.4E+02 0.0052 21.8 9.6 23 76-98 14-36 (118)
445 PF11657 Activator-TraM: Trans 31.8 2.8E+02 0.0061 22.5 10.3 44 78-121 47-91 (144)
446 PF03938 OmpH: Outer membrane 31.8 2.5E+02 0.0054 21.9 9.5 6 99-104 23-28 (158)
447 PF06476 DUF1090: Protein of u 31.7 2.5E+02 0.0053 21.8 9.4 62 102-163 27-99 (115)
448 PF05911 DUF869: Plant protein 31.6 5.9E+02 0.013 26.2 13.3 49 103-151 593-641 (769)
449 PF06005 DUF904: Protein of un 31.6 1.9E+02 0.0042 20.6 11.1 31 167-197 39-69 (72)
450 TIGR00634 recN DNA repair prot 31.5 4.9E+02 0.011 25.2 14.1 21 129-149 313-333 (563)
451 PF06320 GCN5L1: GCN5-like pro 31.0 2.6E+02 0.0056 21.8 9.0 63 86-149 34-96 (121)
452 TIGR01461 greB transcription e 31.0 2.5E+02 0.0055 22.7 7.0 58 129-186 10-71 (156)
453 PF14193 DUF4315: Domain of un 30.9 1.9E+02 0.0041 21.3 5.7 33 109-141 4-36 (83)
454 cd07665 BAR_SNX1 The Bin/Amphi 30.6 3.6E+02 0.0079 23.4 13.4 65 121-185 120-184 (234)
455 PF01763 Herpes_UL6: Herpesvir 30.6 90 0.002 30.8 5.0 67 41-121 337-406 (557)
456 KOG0612 Rho-associated, coiled 30.3 7.6E+02 0.016 27.1 15.8 10 12-21 353-362 (1317)
457 KOG1655 Protein involved in va 30.0 3.7E+02 0.008 23.3 10.5 56 88-143 22-86 (218)
458 PRK08471 flgK flagellar hook-a 30.0 5.5E+02 0.012 25.4 10.3 53 102-157 142-194 (613)
459 PRK05729 valS valyl-tRNA synth 29.9 1.7E+02 0.0037 30.0 7.1 27 125-151 809-835 (874)
460 KOG0999 Microtubule-associated 29.7 6E+02 0.013 25.7 12.2 44 99-142 100-143 (772)
461 PF04100 Vps53_N: Vps53-like, 29.6 4.6E+02 0.0099 24.3 12.0 26 156-181 101-126 (383)
462 PRK11578 macrolide transporter 29.6 4.1E+02 0.009 23.8 10.6 22 175-196 159-180 (370)
463 PF06248 Zw10: Centromere/kine 29.5 5.3E+02 0.012 25.0 15.6 67 105-176 75-141 (593)
464 TIGR01730 RND_mfp RND family e 29.5 3.6E+02 0.0077 23.0 9.3 27 96-124 56-82 (322)
465 PF02388 FemAB: FemAB family; 29.5 2.2E+02 0.0048 26.3 7.2 23 131-153 270-292 (406)
466 PRK03947 prefoldin subunit alp 29.4 2.7E+02 0.0058 21.5 7.7 10 33-42 58-67 (140)
467 TIGR01144 ATP_synt_b ATP synth 29.3 2.7E+02 0.0059 21.5 14.1 44 102-145 22-65 (147)
468 KOG4643 Uncharacterized coiled 29.0 7.6E+02 0.016 26.6 12.0 50 99-148 408-457 (1195)
469 PF05266 DUF724: Protein of un 28.9 3.5E+02 0.0076 22.7 11.9 38 116-153 113-150 (190)
470 PRK14471 F0F1 ATP synthase sub 28.9 3E+02 0.0065 21.9 15.4 51 102-152 35-85 (164)
471 COG4467 Regulator of replicati 28.8 1.3E+02 0.0028 23.6 4.6 61 104-164 13-82 (114)
472 PF05377 FlaC_arch: Flagella a 28.8 2E+02 0.0043 19.8 6.3 35 109-143 3-37 (55)
473 PRK06975 bifunctional uroporph 28.8 5.9E+02 0.013 25.3 11.6 31 107-137 379-409 (656)
474 cd07619 BAR_Rich2 The Bin/Amph 28.6 4.1E+02 0.0089 23.4 14.0 117 78-194 89-222 (248)
475 PF03962 Mnd1: Mnd1 family; I 28.5 3.5E+02 0.0076 22.6 11.3 11 82-92 32-42 (188)
476 PF09789 DUF2353: Uncharacteri 28.5 4.7E+02 0.01 24.0 9.9 26 102-127 68-93 (319)
477 COG0704 PhoU Phosphate uptake 28.4 1.8E+02 0.0038 24.4 5.9 55 75-129 124-178 (240)
478 PF05064 Nsp1_C: Nsp1-like C-t 28.3 1.9E+02 0.004 22.2 5.5 47 101-147 45-91 (116)
479 PRK05683 flgK flagellar hook-a 28.2 6.3E+02 0.014 25.4 11.5 54 102-158 137-190 (676)
480 PF11471 Sugarporin_N: Maltopo 28.0 1.7E+02 0.0037 20.2 4.7 29 125-153 30-58 (60)
481 PRK10246 exonuclease subunit S 28.0 7.3E+02 0.016 26.1 11.7 23 74-96 140-164 (1047)
482 PF08898 DUF1843: Domain of un 27.9 2E+02 0.0044 19.6 6.1 46 150-195 7-52 (53)
483 PF15469 Sec5: Exocyst complex 27.8 3.2E+02 0.007 22.0 16.2 118 80-197 2-144 (182)
484 COG5570 Uncharacterized small 27.7 2.1E+02 0.0045 19.7 6.4 51 132-182 3-55 (57)
485 PF10079 DUF2317: Uncharacteri 27.7 5.9E+02 0.013 24.9 10.2 91 82-172 400-497 (542)
486 PF14257 DUF4349: Domain of un 27.7 3.1E+02 0.0068 23.5 7.5 52 81-137 142-193 (262)
487 KOG4331 Polytopic membrane pro 27.7 2.7E+02 0.0059 28.9 7.8 75 73-151 230-305 (865)
488 KOG0018 Structural maintenance 27.6 8E+02 0.017 26.5 14.1 111 88-198 299-433 (1141)
489 KOG1853 LIS1-interacting prote 27.6 4.7E+02 0.01 23.7 14.1 97 99-195 20-119 (333)
490 PRK06669 fliH flagellar assemb 27.6 4.1E+02 0.009 23.1 13.9 92 101-193 80-171 (281)
491 PF04912 Dynamitin: Dynamitin 27.5 4.9E+02 0.011 23.9 9.4 69 78-151 317-385 (388)
492 KOG4302 Microtubule-associated 27.4 3.8E+02 0.0082 27.1 8.7 114 85-198 72-191 (660)
493 PF05700 BCAS2: Breast carcino 27.4 3.9E+02 0.0083 22.7 12.8 83 101-199 138-221 (221)
494 KOG4552 Vitamin-D-receptor int 27.4 2.3E+02 0.005 24.9 6.4 67 87-153 69-135 (272)
495 PRK10920 putative uroporphyrin 27.4 5.3E+02 0.011 24.3 10.6 107 87-193 66-172 (390)
496 PRK13895 conjugal transfer pro 27.3 3.5E+02 0.0075 22.1 10.1 74 78-153 47-121 (144)
497 COG3206 GumC Uncharacterized p 27.2 5.2E+02 0.011 24.1 11.4 101 95-199 280-381 (458)
498 PLN02939 transferase, transfer 27.1 7.8E+02 0.017 26.2 11.5 95 89-192 304-401 (977)
499 PF09731 Mitofilin: Mitochondr 27.1 5.7E+02 0.012 24.6 16.2 119 79-197 267-394 (582)
500 PF04102 SlyX: SlyX; InterPro 27.0 2.2E+02 0.0048 19.8 7.6 49 103-151 1-49 (69)
No 1
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=99.97 E-value=6.6e-30 Score=217.38 Aligned_cols=123 Identities=38% Similarity=0.595 Sum_probs=121.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
||||+||+++|+|++|+++|++|||++||+|+|+||+++|.+++++++.+++.+++++++++++...+++|+++|+.||+
T Consensus 1 M~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 1 MGIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 156 ~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
+|+||||++||.++..++..+..|+.+++.+...|++|+..|.
T Consensus 81 ~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~ 123 (219)
T TIGR02977 81 KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIA 123 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875
No 2
>PRK10698 phage shock protein PspA; Provisional
Probab=99.97 E-value=8.6e-30 Score=217.80 Aligned_cols=123 Identities=33% Similarity=0.546 Sum_probs=121.0
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
||||+||+++|+|++|+++|++|||++||+|+|+||++++.++++++|.+++.++++++++.++...+++|+.+|+.||.
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 156 ~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
+|+|||||+||.+|..++..+..|+.+++.+...+++|+..+.
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~ 123 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIG 123 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988775
No 3
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=99.96 E-value=3.5e-28 Score=205.45 Aligned_cols=122 Identities=48% Similarity=0.692 Sum_probs=120.3
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029028 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (200)
Q Consensus 77 sif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~ 156 (200)
|||+||+++|+|++|+++|++|||++||+|+||||+++|.+++++++.+++.+++++++++++...+++|+.+|..||.+
T Consensus 1 ~lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 157 G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
|+||||++||.++..+++.+..++.+++.+..++++|+..|.
T Consensus 81 g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~ 122 (221)
T PF04012_consen 81 GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLE 122 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998875
No 4
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=99.96 E-value=4e-28 Score=208.15 Aligned_cols=123 Identities=47% Similarity=0.634 Sum_probs=121.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
||||+||+++|++++|+++|++|||++||+|+||||+.++.++++.+|++++.+++++++|++....+++|+.+|+.||.
T Consensus 1 M~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 1 MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 156 ~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
+|+|+||+++|.+++.|++.+..++.++..+...+++|+.++.
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLA 123 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998874
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.10 E-value=0.012 Score=47.07 Aligned_cols=76 Identities=26% Similarity=0.352 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 121 ~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
++.......++++++...++.++.+...+|..++++|+.+.|+..|.+++.++..+..+...+..++....++...
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a 77 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETA 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999999999999999888887777653
No 6
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=97.05 E-value=0.017 Score=48.93 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 120 ~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.++.........++++...++..|++....|+..+..|+-+-|..+|.+|+.||.+++.+..++..++.++..+..
T Consensus 27 ~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~ 102 (191)
T PTZ00446 27 KAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLEN 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566677777777777777888899999999999999999999999999999999999999888764
No 7
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=95.51 E-value=0.34 Score=41.30 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 118 ar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
.-+++-.+..++..+.+-.+.++..++.-...|+..+..|+.|-|+.+|.+|.-++.-+.+...++-..++.+..+.
T Consensus 14 ~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiE 90 (209)
T KOG2910|consen 14 QDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIE 90 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666777777777788999999999999999999999999999999999999988887764
No 8
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.31 E-value=0.65 Score=39.33 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 029028 82 LARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (200)
Q Consensus 82 l~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDL 161 (200)
+-.-+...-..+|+++||.+.-|.|.|.-+.+++.-.+..+-........+++++.+...++.+..+.... |.+ -.
T Consensus 37 ~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~-L~~---L~ 112 (194)
T PF15619_consen 37 TLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH-LKK---LS 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HH
Confidence 33444455667899999999999999999999999999999999999999999999999999887766654 222 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 162 Ar~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
...-|.+...+...+..++..++..+..+..|..++.
T Consensus 113 ~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 113 EDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123344555666666666667776666666666554
No 9
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.26 Score=46.47 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 115 l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
+.+.-.+++.++.....+.+++..+++++++...+++.|++.|.--+|..-|.+++-.+..++..-..+.+.+....+.
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~I 306 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQI 306 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4556677888888889999999999999999999999999999999999999999999999999888887776665544
No 10
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=94.16 E-value=0.77 Score=43.91 Aligned_cols=83 Identities=12% Similarity=0.261 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~ 186 (200)
.||.+-.++.+.|..+..++.+-+.+..+-++++++......+...||+..+.++.+ ++.++.++..+++.+++++
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~----~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTK----EIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 456777888888999999999999999999999999999999999999887655443 4555555555666666666
Q ss_pred HHHHHHH
Q 029028 187 KNVVNNL 193 (200)
Q Consensus 187 ~~~ve~L 193 (200)
..+.+.+
T Consensus 136 ~~~l~~~ 142 (472)
T TIGR03752 136 QRRLAGV 142 (472)
T ss_pred HHHHhhc
Confidence 5555443
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.11 E-value=3.4 Score=35.52 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=60.2
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 029028 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (200)
Q Consensus 95 dk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~ 174 (200)
+.+|+-...++.-|.++++.|..+...+-..-+.......+...++..|..+..+...| +.-|-.|-.+...++.
T Consensus 130 e~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea-----E~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 130 ERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA-----ENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 33334445555666666666666666666666666666666666666666666666655 4445556666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 029028 175 NANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 175 ~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+..+...+.........++..|
T Consensus 205 ~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 205 EIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666666665554
No 12
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.35 E-value=1.8 Score=42.70 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=97.3
Q ss_pred CcccccCcHHHHHHHH-----HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 70 GALNTRMNLFDRLARV-----VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (200)
Q Consensus 70 ~~~~~~Msif~Rl~~l-----vra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~ 144 (200)
-+.-+.|+++++|..+ +-+.+-.++++..+ ..-.++++...+.+....++.....+-.+.+-...+.+.-.
T Consensus 84 ~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~----~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~ 159 (629)
T KOG0963|consen 84 FAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQK----ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQ 159 (629)
T ss_pred hhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhh----hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHH
Confidence 3444678888777642 22223333334333 23346688888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 145 DWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 145 ~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
.....++.+..--.+.+.+..+.+.+.+.++-..++.++..++..+..|...+.
T Consensus 160 ~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~ 213 (629)
T KOG0963|consen 160 LLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIE 213 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899988888899999999999999999999999999999999999976654
No 13
>PRK11637 AmiB activator; Provisional
Probab=93.19 E-value=2.7 Score=39.00 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
+++.+.+.++++.+..+.+.........++.+++.+..++...+.+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555554433
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=93.04 E-value=2.3 Score=36.53 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 159 EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
-.-|..+|.+|+.||.+++.+..++..+++.+..+..
T Consensus 60 K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999888888877776643
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.03 E-value=5.9 Score=35.72 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
..|+..+..|+++...+...+..+-...-.+...+..+..++..++..... +...|-+--..+-.+...+...+...+.
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~~~D~~eL~~lr~eL~~~~~~i~~~k~ 230 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IESCDQEELEALRQELAEQKEEIEAKKK 230 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666667777777777777777666554 3333333333344444444444444444
Q ss_pred HHHHHHHHHHHHHh
Q 029028 182 QLDQQKNVVNNLVS 195 (200)
Q Consensus 182 qld~~~~~ve~Lk~ 195 (200)
.+++++.+...++.
T Consensus 231 ~l~el~~el~~l~~ 244 (325)
T PF08317_consen 231 ELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 16
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=93.02 E-value=3.8 Score=32.61 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMR 119 (200)
Q Consensus 107 ~IReme~~l~kar 119 (200)
...+.++.+.+++
T Consensus 60 ~~~e~e~~l~~Ar 72 (141)
T PRK08476 60 IEHEIETILKNAR 72 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 17
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.55 E-value=2.9 Score=39.94 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
|++.+.-............+.+.++-+|+++.+....+++|+++-.. ++.-+..|-+.-...+..+++.-+.++.++..
T Consensus 354 ~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~-~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s 432 (493)
T KOG0804|consen 354 QYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE-EREENKKLIKNQDVWRGKLKELEEREKEALGS 432 (493)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556667777888888899999999999998877543 23333344444445555566666666666666
Q ss_pred HHHHHHHHHhhhhc
Q 029028 186 QKNVVNNLVSNTRV 199 (200)
Q Consensus 186 ~~~~ve~Lk~~l~~ 199 (200)
.+.++..|+.+||+
T Consensus 433 ~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 433 KDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777766653
No 18
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=92.41 E-value=1.9 Score=37.89 Aligned_cols=92 Identities=11% Similarity=0.235 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 029028 100 PEKILEQAVLEMNDDLVKMRQATAQVLAS-----QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (200)
Q Consensus 100 P~~mLdQ~IReme~~l~kar~~lA~v~A~-----~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~ 174 (200)
-...|+.+|+|++..|.+++..|+..... ......++..+..+|.+.-.+|+.+=..|+-|-|...+.+...+..
T Consensus 84 ~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ 163 (254)
T PF03194_consen 84 FLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKE 163 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34889999999999999999888763322 1112678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029028 175 NANALKAQLDQQKNVVN 191 (200)
Q Consensus 175 ~a~~lq~qld~~~~~ve 191 (200)
+...++.+++.......
T Consensus 164 ek~~le~~~~~~~~~~~ 180 (254)
T PF03194_consen 164 EKEELEKELEEYRNSIE 180 (254)
T ss_pred HHHHHHhhhhhhhhhhh
Confidence 88888886655544433
No 19
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=92.12 E-value=3.6 Score=35.07 Aligned_cols=111 Identities=22% Similarity=0.224 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 029028 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (200)
Q Consensus 80 ~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~E 159 (200)
+.||++||.. .....|.+.....+. -..|....-.-+...|++..+++.+...+..++.++.....+-.....
T Consensus 72 k~fWRViKt~------d~~~AE~~Y~~F~~Q-t~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~ 144 (192)
T PF11180_consen 72 KAFWRVIKTQ------DEARAEAIYRDFAQQ-TARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQ 144 (192)
T ss_pred CceeEeeecC------ChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567766653 111223333333322 334555666666777777778888887777777777666655443332
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 160 DLA--REALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 160 DLA--r~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
--. +.+-.+...++.+-...+.+|+.+..+|..|....
T Consensus 145 va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 145 VAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 33444556677777777777888888877777654
No 20
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=91.62 E-value=9 Score=34.68 Aligned_cols=70 Identities=7% Similarity=0.113 Sum_probs=48.7
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 75 RMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (200)
Q Consensus 75 ~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~ 144 (200)
.-|+|.||+.-++..+..++.+++.-..-+|..+.+++..-....+..+..-.........+.++..-|.
T Consensus 71 ~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ 140 (333)
T PF05816_consen 71 KKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIA 140 (333)
T ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888777777888888888888888888888887777777777666555555544444444444433
No 21
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.62 E-value=19 Score=37.52 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=67.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 029028 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS---EDWYRKA 150 (200)
Q Consensus 74 ~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i---~~we~rA 150 (200)
+.|++=..|+++-.--=---+.+.||-.++.+ +..|.=++.+...--.+.|..+-.|++++.+.+.++ .+|..+-
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~E--lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~ 302 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKE--LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERY 302 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665555554443333334566778887765 445555566666666667777777777777665544 3343333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 151 QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 151 ~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
..-+.---|.. .-+--.|.-.|+.++.|+..++.+++.++.|...|.
T Consensus 303 k~emad~ad~i-EmaTldKEmAEERaesLQ~eve~lkEr~deletdlE 349 (1243)
T KOG0971|consen 303 KEEMADTADAI-EMATLDKEMAEERAESLQQEVEALKERVDELETDLE 349 (1243)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111110 112334555666777777777777777777666553
No 22
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=91.22 E-value=6.7 Score=31.52 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.++++--..+.+++.++.+...++.......+.++.+.+.++.+.-+.|+..
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666666655555555544
No 23
>PRK11637 AmiB activator; Provisional
Probab=91.12 E-value=9.4 Score=35.46 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 91 n~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
.++++.+.+-..-|.....++++++.+....++.....+..++.+..+.+..+++++.
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~ 226 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLES 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666667777777777777777777777666666665555555543
No 24
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=90.83 E-value=9.3 Score=32.47 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.+|+.--..+.+++.++.+...++.......+.++.+.+.++.+.-..|+..
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~e 131 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREA 131 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555554444443
No 25
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.79 E-value=10 Score=38.13 Aligned_cols=105 Identities=17% Similarity=0.313 Sum_probs=61.6
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHhcCCH---
Q 029028 93 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ-------KRLENKCKAAEQASEDWYRKAQL---ALQKGEE--- 159 (200)
Q Consensus 93 ~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~-------k~le~k~~~~~~~i~~we~rA~~---AL~~G~E--- 159 (200)
-+......++.+...|.+++.+.+.++..+......+ ..+|+++.+....-...|.+... +-+...+
T Consensus 447 qis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aa 526 (697)
T PF09726_consen 447 QISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAA 526 (697)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 3444555556666666666666555555444444333 44555555555554444444322 1111112
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 160 -----------DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 160 -----------DLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
+-+..+-.|+.++|.++..++.++..-++++..|+..+
T Consensus 527 r~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 527 RALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred hccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333556888999999999999988888888887765
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.77 E-value=8.6 Score=41.77 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
+|+.|-....+++-+-. +-.|+ .+++.. --.+....++++.+..+.....+++..+.++..++.+++..+..|.
T Consensus 258 lFk~lI~~~~~~~aad~--~r~~eERR~liEEA-ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 258 LFKHLITESTNYVAADY--MRHANERRVHLEEA-LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHhhhhhhhhHHHH--hhCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777664444 33453 777777 4577888888888889999999999989999999988888888886
Q ss_pred hc
Q 029028 155 QK 156 (200)
Q Consensus 155 ~~ 156 (200)
+.
T Consensus 335 ky 336 (1486)
T PRK04863 335 DH 336 (1486)
T ss_pred HH
Confidence 65
No 27
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.74 E-value=5.3 Score=29.47 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029028 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (200)
Q Consensus 97 ~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~ 156 (200)
+-|-+.+|...|.|++++=....+....+...+..++++...+..+-..|+.|.+.-|.+
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 336789999999999999999999999999999999999999999999999998876654
No 28
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=90.54 E-value=7.6 Score=36.53 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
||++|..+..+-+.+..+++.-+++++.|+..
T Consensus 347 aLEEKaaLrkerd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 347 ALEEKAALRKERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 29
>PRK02224 chromosome segregation protein; Provisional
Probab=90.35 E-value=17 Score=36.61 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 112 e~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
...+..++..+..+......++.++..+..++++++
T Consensus 205 ~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 205 HERLNGLESELAELDEEIERYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 30
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.31 E-value=7 Score=39.31 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=64.6
Q ss_pred CcHHHHHHHHHHHH-HH---HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 76 MNLFDRLARVVKSY-AN---AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 76 Msif~Rl~~lvra~-in---~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
-.+|.+-..+++-. +. .+-+.++--...|...+.+--+.+.+++.....+......+..+|+++.+.-+.+.+|+.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666644 22 122222223355666666656666667777777777777777777777777777777776
Q ss_pred HHHhcCCH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 152 LALQKGEE---DLA---REALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 152 ~AL~~G~E---DLA---r~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
.-+..=.. .|- |+...+...+.+++..++..+++.+...+..+
T Consensus 618 ~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 618 RVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54332211 111 33344444444455555555555444444433
No 31
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.06 E-value=6.2 Score=41.98 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
+-.+-.|+..++.|.+++..++.+........+++.+++..++++..++.
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666667777776666666666666666666666666665543
No 32
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.96 E-value=8.2 Score=34.89 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
.-++..+.+++.+..++.+.+..+..+...+.+++..++.+.++++..-..-...-+ .-..+..++.++...++.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n-----~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYN-----ELQLELIEFQEERDSLKN 120 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666666666665544333222111 122344556677777888
Q ss_pred HHHHHHHHHHHHHh
Q 029028 182 QLDQQKNVVNNLVS 195 (200)
Q Consensus 182 qld~~~~~ve~Lk~ 195 (200)
+++....++++|++
T Consensus 121 q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 121 QYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887764
No 33
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.79 E-value=5.2 Score=38.62 Aligned_cols=60 Identities=22% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHhhccC-CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 90 ANAILSSFE-DPEKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 90 in~~ldk~E-DP~~mLdQ~IReme~~l~kar~~l-A~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
....++.++ +.+.++++...++++...+++... ..+...+..+++++++.+.++.+++++
T Consensus 23 a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~r 84 (514)
T TIGR03319 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR 84 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333 445777777777766666666555 455555566666665656666666555
No 34
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=89.79 E-value=10 Score=31.36 Aligned_cols=51 Identities=10% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.+|++--..+.+++.++.....++.......+.++...+.+....-+.|+.
T Consensus 58 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ 108 (181)
T PRK13454 58 AVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRA 108 (181)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544444445555555555555555555555555555555444444433
No 35
>PRK09039 hypothetical protein; Validated
Probab=89.65 E-value=11 Score=34.48 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
+.+++++|...+....+......+|.+++..++.++..++....
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555444444333
No 36
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=89.33 E-value=9.3 Score=30.21 Aligned_cols=92 Identities=21% Similarity=0.273 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCC-------HHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK---AQLALQKGE-------EDLAREALKRRKSYADNA 176 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r---A~~AL~~G~-------EDLAr~AL~rk~~~e~~a 176 (200)
.+.+.-.++.+....+..++.++..++.+++++....++++.- +.-...-|+ +++-.+.=.++..++-++
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445556778888899999999999999999888776666543 333444444 555566666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 029028 177 NALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 177 ~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
..++.|-+..+..+++|+..|.
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8898888888888888888775
No 37
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.14 E-value=5 Score=29.13 Aligned_cols=63 Identities=14% Similarity=0.262 Sum_probs=55.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~ 156 (200)
+..+-|...+|.-.|.++++.-....+.+..+.-...-++++-..+..+-.-|+.+.+.-|.+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334447789999999999999999999999999999999999999999999999999877654
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.10 E-value=15 Score=32.23 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 85 VVKSYANAILSSFED----PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (200)
Q Consensus 85 lvra~in~~ldk~ED----P~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~w 146 (200)
.+...++.+-++... ...+++..|++++..|..+...-+.+......+..++.++..+.+..
T Consensus 29 ~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 29 RLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 455555655555322 23667777777777777776666666666666666666655555544
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.92 E-value=18 Score=32.85 Aligned_cols=96 Identities=10% Similarity=0.087 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
...|+..+..|+.+.....+.+..+-...-.+..++..+..++..+.+.....=..+ .+..+.+=.+......++...+
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d-~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD-PTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666677776666666666666666677777777777777665555532333 2233333345555555555555
Q ss_pred HHHHHHHHHHHHHHhhh
Q 029028 181 AQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 181 ~qld~~~~~ve~Lk~~l 197 (200)
..+++++.++..++..|
T Consensus 225 ~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 225 KKLEELEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555554444
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.90 E-value=18 Score=38.08 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i 143 (200)
|.++.+.+..++....++.......++.+.+.....
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~ 374 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEV 374 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333333333333333
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.88 E-value=10 Score=32.42 Aligned_cols=34 Identities=3% Similarity=0.027 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
.-.+-.++.+++..++.+++.++.+.+.+++++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666677777777777777766554
No 42
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.84 E-value=13 Score=33.46 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=5.3
Q ss_pred cCccceEEeec
Q 029028 43 NGGVGALKVTR 53 (200)
Q Consensus 43 ~~~~~~~~~~~ 53 (200)
+|-+..+.|..
T Consensus 51 ~G~v~~i~V~e 61 (423)
T TIGR01843 51 GGIVREILVRE 61 (423)
T ss_pred CcEEEEEEeCC
Confidence 34455555543
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.77 E-value=8.1 Score=37.77 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHH--------------HHHHHHHHHHHHH
Q 029028 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA--LQKGEEDLAREA--------------LKRRKSYADNANA 178 (200)
Q Consensus 115 l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A--L~~G~EDLAr~A--------------L~rk~~~e~~a~~ 178 (200)
+..++..+..+-.....++.++..+..+++++..+-..+ ...|...-.+.. ..++..++++...
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~ 173 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR 173 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555544444444 222322222222 3344555555555
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 029028 179 LKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 179 lq~qld~~~~~ve~Lk~~ 196 (200)
++.+...+..++..++..
T Consensus 174 Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 174 LKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHhhhhHHHHHHHHHH
Confidence 555555555555555543
No 44
>PRK02224 chromosome segregation protein; Provisional
Probab=88.60 E-value=26 Score=35.30 Aligned_cols=46 Identities=7% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
...+.+++..+.+++..+.........++.++..+...+.+|....
T Consensus 205 ~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~ 250 (880)
T PRK02224 205 HERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR 250 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666666666665555543
No 45
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=88.49 E-value=0.14 Score=39.41 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
|.+|.++..++.......+........++.++..+......+.+
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 44444444444444444444444444444444444444333333
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.48 E-value=15 Score=32.25 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (200)
.++..+..++..+....-...-++.++...+..
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~e 67 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESE 67 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 47
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.30 E-value=15 Score=31.21 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029028 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (200)
Q Consensus 118 ar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~ 171 (200)
....+=......++|+++-..++++...-..++..|+++|+.|.||--++-...
T Consensus 7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIR 60 (203)
T KOG3232|consen 7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIR 60 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344555666677888888888888888888899999999999999865544333
No 48
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.23 E-value=17 Score=31.74 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
.-|..-+..++++..+++..|.........|+.+...++.....++.++..|.
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eae 60 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAE 60 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999888876663
No 49
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.88 E-value=29 Score=34.10 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 165 ALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
.+.++.+++.+...++.++++......++
T Consensus 260 ~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 260 LFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666555555444
No 50
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=87.88 E-value=14 Score=30.41 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~w 146 (200)
....+++.++.+.-.++.......+.++.+++.++...
T Consensus 44 ~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 44 TNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.87 E-value=21 Score=38.21 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 140 EQASEDWYRKAQLALQKGEED--LAREALKRR----KSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 140 ~~~i~~we~rA~~AL~~G~ED--LAr~AL~rk----~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.++++.-+..|+.|++.-+.| +|+.-|.+. ...|..+....+++.+++..++.||.+.
T Consensus 1572 L~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1572 LEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666555432 344444443 3355666666777777777777777654
No 52
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.76 E-value=13 Score=32.17 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 158 ~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+--.|..||.||+.||.++..+...+...+.+.+.|.
T Consensus 59 NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE 95 (221)
T KOG1656|consen 59 NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 95 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5567788999999999999999988888777766554
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.62 E-value=9.9 Score=39.51 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=65.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 029028 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR 169 (200)
Q Consensus 90 in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk 169 (200)
+.+.+=++.|-..-=.|.+-.+.+.+.+-+..+..++..+.+|.++++.++..|.+++.+...|| |-|++......++
T Consensus 380 LKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl--GAE~MV~qLtdkn 457 (1243)
T KOG0971|consen 380 LKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL--GAEEMVEQLTDKN 457 (1243)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHhhc
Confidence 33444444444433344555566677777788888999999999999999999999999999998 4466666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 029028 170 KSYADNANALKAQLDQ 185 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~ 185 (200)
..+|+.+..|+..+.+
T Consensus 458 lnlEekVklLeetv~d 473 (1243)
T KOG0971|consen 458 LNLEEKVKLLEETVGD 473 (1243)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 6666666555554444
No 54
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=87.04 E-value=3.2 Score=28.91 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 137 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 137 ~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
+.++...++|..-|..|...||.+-||.-+.-.+.+++.++..+
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677888899999999999999999999999999888887665
No 55
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.03 E-value=18 Score=30.74 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE-----DWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~-----~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~ 178 (200)
++..|.+++..+.++...--.........+......+..+. --++-|+.||. --.........|+.++..
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~-----~k~~~~~~~~~l~~~~~~ 110 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI-----EKQKAQELAEALERELAA 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 33355566666666655444444444444444444444443 24556777766 233445556667777777
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 029028 179 LKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 179 lq~qld~~~~~ve~Lk~~l~ 198 (200)
++.+++.++..+.+|+..|.
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~ 130 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLA 130 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766654
No 56
>PRK12704 phosphodiesterase; Provisional
Probab=86.97 E-value=28 Score=33.75 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~l-A~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
+.+.++++...++++...+++... ..+...+..+++++++.+.++.+.+++
T Consensus 39 eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~r 90 (520)
T PRK12704 39 EAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR 90 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777777776666666554 455555566666666666666666554
No 57
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.86 E-value=20 Score=36.39 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=24.2
Q ss_pred HHHHHHHHHHH---HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKS---YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLE 133 (200)
Q Consensus 78 if~Rl~~lvra---~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le 133 (200)
|..|-..++.. +++.+++++++-...+++..++++..+.++++...+.......++
T Consensus 503 ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 503 IIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444432 334444444444444444444444444444444444333333333
No 58
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.55 E-value=21 Score=32.16 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=33.9
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 91 n~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
+.+.+.+++-...|++-...+.+.+..+...+-.+......++.++..+++.....+
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~ 204 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444455555556666666666666666666666666666666666666666555433
No 59
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=86.47 E-value=36 Score=34.73 Aligned_cols=10 Identities=10% Similarity=0.388 Sum_probs=5.1
Q ss_pred CCCcccccCC
Q 029028 60 SRSHCYRQGG 69 (200)
Q Consensus 60 ~~~~~~~~~~ 69 (200)
.+|.++.++|
T Consensus 644 ldG~~~~~~G 653 (1164)
T TIGR02169 644 LEGELFEKSG 653 (1164)
T ss_pred eCceeEcCCc
Confidence 3566655443
No 60
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=86.42 E-value=15 Score=29.20 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
.+|++-=..+.+++..+...-.++.......+..+...+.+++.+...+
T Consensus 34 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a 82 (141)
T PRK08476 34 KFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555554443
No 61
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.49 E-value=16 Score=28.67 Aligned_cols=91 Identities=10% Similarity=0.104 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
...+++++.+..--..-+..+..-..++.++..+...+..+...+..|-.. -+..=..+-.++..++.++..++..++.
T Consensus 38 ~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~-l~~~e~sw~~qk~~le~e~~~~~~r~~d 116 (132)
T PF07926_consen 38 KIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAE-LEESEASWEEQKEQLEKELSELEQRIED 116 (132)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455554445566777777888888888999999998888877443 2333345677777888888888887777
Q ss_pred HHHHHHHHHhhh
Q 029028 186 QKNVVNNLVSNT 197 (200)
Q Consensus 186 ~~~~ve~Lk~~l 197 (200)
+..+=.-|-..|
T Consensus 117 L~~QN~lLh~Ql 128 (132)
T PF07926_consen 117 LNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHH
Confidence 776665555544
No 62
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.35 E-value=19 Score=38.34 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+.++.+++.+++.+...++.+...+..++..+
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~ 911 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888888888888888888888777776654
No 63
>PRK10698 phage shock protein PspA; Provisional
Probab=85.13 E-value=23 Score=30.35 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE-----DWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~-----~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
..+.+++..+.++...--.........+.........+. --++-|+.||..- ..+......|+.+++..+
T Consensus 38 ~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K-----~~~~~~~~~l~~~~~~~~ 112 (222)
T PRK10698 38 DTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK-----QKLTDLIATLEHEVTLVD 112 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333333344444444333333 3455666666442 335667778888888888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 029028 181 AQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 181 ~qld~~~~~ve~Lk~~l~ 198 (200)
.+++.++..+.+|+..|.
T Consensus 113 ~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 113 ETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887764
No 64
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=85.08 E-value=19 Score=29.32 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~ 126 (200)
.-.++.+.+.+..+.+++......+
T Consensus 66 ~eA~~~~~e~e~~L~~a~~ea~~ii 90 (175)
T PRK14472 66 DEAEAILRKNRELLAKADAEADKII 90 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554444433
No 65
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=84.94 E-value=15 Score=28.10 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
++=-+....+++..++.+.+.....+.++..+......+......-...|
T Consensus 8 l~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g 57 (141)
T TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAG 57 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445567788889999999999999999999999998888776665666
No 66
>PRK09343 prefoldin subunit beta; Provisional
Probab=84.86 E-value=17 Score=28.36 Aligned_cols=96 Identities=13% Similarity=0.208 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHhcCCHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK---------AQ-LALQKGEEDLAREALKRRKSYA 173 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r---------A~-~AL~~G~EDLAr~AL~rk~~~e 173 (200)
|...+.+.-..+...++.+..+......++.++.+++.-.++++.- .- .-+....+++-...-.|+..++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Confidence 4445556666777888888888888888888888877666655431 11 1233334555566666777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 029028 174 DNANALKAQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~Lk~~l~~ 199 (200)
..+..++.+.+.++..+.++..+|+.
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988888888888763
No 67
>PRK09039 hypothetical protein; Validated
Probab=84.46 E-value=32 Score=31.40 Aligned_cols=29 Identities=17% Similarity=0.325 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCK 137 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~ 137 (200)
.++++.+.+.+..+..+.+.+.+++..+.
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444
No 68
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=84.36 E-value=47 Score=37.27 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 77 sif~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
+-+.|....+...+.++=+.++++. .-+.-.++.++.+....+..+..-.-....+.+++.....++.+|..+...-
T Consensus 1290 ~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~ 1369 (1930)
T KOG0161|consen 1290 SALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEE 1369 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777766666653 6778888888889999999999999999999999999999999999999887
Q ss_pred Hhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 154 LQK---GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 154 L~~---G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+.. +-|+.=+....+...+++.++......+.++..-..|.
T Consensus 1370 ~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~ 1413 (1930)
T KOG0161|consen 1370 VLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQ 1413 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 34455555566666666666655555555544444443
No 69
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=84.21 E-value=21 Score=28.99 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 80 DRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLA 127 (200)
Q Consensus 80 ~Rl~~lvra~in~~ldk~EDP---~~mLdQ~IReme~~l~kar~~lA~v~A 127 (200)
+.+..++...-+.+.+.+++. ..-.++...+++..+.+++......+.
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~ 83 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLA 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544443333333333 355555566666666666555444443
No 70
>PRK00106 hypothetical protein; Provisional
Probab=83.89 E-value=38 Score=33.11 Aligned_cols=32 Identities=19% Similarity=0.069 Sum_probs=15.1
Q ss_pred HHHhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 91 NAILSSFE-DPEKILEQAVLEMNDDLVKMRQAT 122 (200)
Q Consensus 91 n~~ldk~E-DP~~mLdQ~IReme~~l~kar~~l 122 (200)
+.+++.++ +.+.++++...+.++...+++...
T Consensus 45 ~~IleeAe~eAe~I~keA~~EAke~~ke~~lEa 77 (535)
T PRK00106 45 VNLRGKAERDAEHIKKTAKRESKALKKELLLEA 77 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333 334555555555555554444443
No 71
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=83.87 E-value=15 Score=27.05 Aligned_cols=92 Identities=14% Similarity=0.231 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR----EALKRRKSYADNANAL 179 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr----~AL~rk~~~e~~a~~l 179 (200)
|...+.++......+...+..+......++.+.......|...-.....+|..-.+.|-. ..-.+...+..+...+
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l 84 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESL 84 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555556666666666666666666666666555443332 2223334444444444
Q ss_pred HHHHHHHHHHHHHHHh
Q 029028 180 KAQLDQQKNVVNNLVS 195 (200)
Q Consensus 180 q~qld~~~~~ve~Lk~ 195 (200)
+..++.....++-.+.
T Consensus 85 ~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 85 TQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 72
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=83.44 E-value=15 Score=31.75 Aligned_cols=94 Identities=12% Similarity=0.203 Sum_probs=51.4
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK--RRKS 171 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~--rk~~ 171 (200)
|+++.+-+..++..+++....+.+++.....+++.+-..+++++++-..-..|. ..||.|..-- .-..
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs----------~~DleRFT~Lyr~dH~ 103 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWS----------PADLERFTELYRNDHE 103 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----------hHHHHHHHHHHHhhhh
Confidence 344444455566666666666666666666666666666666666666544443 2444443322 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 172 YADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 172 ~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+......+..+.+.+..++++-..|
T Consensus 104 ~e~~e~~ak~~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 104 NEQAEEEAKEALEEAEEKVEEAFDDL 129 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554443
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.31 E-value=36 Score=36.13 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
..-++..+......+..++..+..+....++.+.++..+..+...|+.+...++..-.
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777777777777777777777777777777777777766655443
No 74
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.27 E-value=23 Score=28.84 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 163 r~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
++...+..........++..++.+.+.+.++++-+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 154 QDSREEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666666666666666544
No 75
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.27 E-value=27 Score=29.56 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 029028 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (200)
Q Consensus 80 ~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~E 159 (200)
.+-+.=++.+.|++...-=+=++-|...|.+|+......++.+..+..+-+++..-+..++.+.+.++.....- .+...
T Consensus 8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kdK~ 86 (201)
T PF13851_consen 8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKDKQ 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44455566777777766556678999999999999999999999999999999999999999999888877652 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 160 DLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.|+ .+-.+...++.++..++-..+.+.....++..
T Consensus 87 ~L~-~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 87 SLQ-NLKARLKELEKELKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23344455566666666666666666555543
No 76
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.07 E-value=30 Score=29.98 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
|.++...+......+......-..++.++..+...++.+..++..++..|
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~ 75 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKA 75 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443333333333344444444444444444444444444444
No 77
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.92 E-value=30 Score=35.07 Aligned_cols=9 Identities=0% Similarity=0.194 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 029028 78 LFDRLARVV 86 (200)
Q Consensus 78 if~Rl~~lv 86 (200)
|.+|-..++
T Consensus 498 ii~~A~~~~ 506 (771)
T TIGR01069 498 IIEQAKTFY 506 (771)
T ss_pred HHHHHHHHH
Confidence 555544443
No 78
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.82 E-value=26 Score=33.37 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKC 136 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~ 136 (200)
.+.++++++.+++..++.+.+....++.++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 79
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=82.81 E-value=20 Score=35.04 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=27.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 95 dk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
..+-||..+|++.=..-.+...++++.+......++....++- -..+++.|+++.+.
T Consensus 146 ~~lp~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~ 202 (555)
T TIGR03545 146 SQLPDPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEA 202 (555)
T ss_pred ccCCCHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 3455888888865444444444555444444444443333332 14444444444443
No 80
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.74 E-value=6 Score=30.52 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCCHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR--------KAQLALQKGEEDLARE 164 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~--------rA~~AL~~G~EDLAr~ 164 (200)
.-+++.|.++-+++.+.+..+..++-+-..|..+-..++..+.+.+. ....-+..|.+.||+-
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~L 81 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHH
Confidence 45788899999999999999999999999999999999999988865 3334466778888763
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.61 E-value=22 Score=28.00 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~w 146 (200)
..||..+.++...+..++++.+.+..+..++-.+-...+.+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554444
No 82
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.44 E-value=19 Score=27.28 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK---A-------QLALQKGEEDLAREALKRRKSYADNAN 177 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r---A-------~~AL~~G~EDLAr~AL~rk~~~e~~a~ 177 (200)
+.+.-..+...++.+..+......++.++.+...-++.++.- + ..-+....++.-...-.++..++..+.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777888888887777766666542 1 122334446666777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 029028 178 ALKAQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 178 ~lq~qld~~~~~ve~Lk~~l~~ 199 (200)
.++.+.+.++..+.++.++|+.
T Consensus 85 ~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 85 TLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988863
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.43 E-value=33 Score=32.44 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 029028 134 NKCKAAEQASEDWYRK 149 (200)
Q Consensus 134 ~k~~~~~~~i~~we~r 149 (200)
.+...++.++++++..
T Consensus 358 ~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 358 DKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333333333333
No 84
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=81.87 E-value=43 Score=30.96 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA---- 153 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A---- 153 (200)
+-.-+..++.-..+++-....--+..|.+-|.++++...+..-.+..++.+...+++.+..++..+.+-..-...|
T Consensus 223 LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL 302 (384)
T PF03148_consen 223 LREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRL 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444555555444567888888888888888888888888888888888888888887777655544
Q ss_pred -HhcCC------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 154 -LQKGE------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 154 -L~~G~------EDLAr~AL-~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
....+ -|-|...| .+...+.+.+..|+.++.+.+.....|...
T Consensus 303 ~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 303 ENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred hhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223 25566666 688899999999999999988888877654
No 85
>PRK03918 chromosome segregation protein; Provisional
Probab=81.82 E-value=60 Score=32.54 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029028 78 LFDRLARVVKSYANAIL 94 (200)
Q Consensus 78 if~Rl~~lvra~in~~l 94 (200)
+|....-+-.|.+..++
T Consensus 125 ~f~~~~~~~Qg~~~~~~ 141 (880)
T PRK03918 125 VFLNAIYIRQGEIDAIL 141 (880)
T ss_pred HhceeEEEeccchHHHh
Confidence 44333334455555554
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.73 E-value=36 Score=29.94 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
.+..+.+.+......+..+.-+..+++.++.++++++++.+
T Consensus 39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 87
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.67 E-value=45 Score=31.01 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=64.7
Q ss_pred ccccccccccccCccceEEeeccc-cccCCCCcccccCCCcccccCcHHHHHHHHHHHHHHHHhhccCCH--HHHHH---
Q 029028 32 MVKKPLTTSFFNGGVGALKVTRLR-IAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDP--EKILE--- 105 (200)
Q Consensus 32 ~~~~~l~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Msif~Rl~~lvra~in~~ldk~EDP--~~mLd--- 105 (200)
..++|+.++.-.||+..+..-... ...+.. .|.|-. + |++.++++++.--+- ++.++
T Consensus 169 ~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~----n~~~~~-----~--------irasvisa~~eklR~r~eeeme~~~ 231 (365)
T KOG2391|consen 169 AYKPPLPPPPPPGGASALPYMTDDNAEPYPP----NASGKL-----V--------IRASVISAVREKLRRRREEEMERLQ 231 (365)
T ss_pred CcCCCCCCCCCCCccccCcccCCCCCCcCCC----Cccccc-----c--------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999998743322111 111111 122222 1 444444433321111 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
-.+.+++.--++.+.......+....||+++..+...++=+..+.+.||.+-.
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 23344455556666677788888899999999999999999999888776543
No 88
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=81.53 E-value=49 Score=31.32 Aligned_cols=50 Identities=10% Similarity=0.194 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLAS 128 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~ED---P~~mLdQ~IReme~~l~kar~~lA~v~A~ 128 (200)
|+.+..++...-..+.+.+++ -..-++....+.++.+.+++..-...+.+
T Consensus 23 ~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~ 75 (445)
T PRK13428 23 VPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEE 75 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554444333333333 33555555555555555555554444433
No 89
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=81.52 E-value=28 Score=28.61 Aligned_cols=104 Identities=11% Similarity=0.096 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFE---DPEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~E---DP~~mLdQ~IReme~~l~kar~~lA~v~A~-~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
+|.++.+++..+-..+-+.++ .-..-.+....+.++.+.+++....+...+ ..++.. +...+....+......
T Consensus 31 ~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a---~~~~~~~~~ea~L~~~ 107 (155)
T PRK06569 31 ITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES---EFLIKKKNLEQDLKNS 107 (155)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 466777777665444443333 333555556666666666666666655555 333333 3344455566667777
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 154 LQKGEEDLAREALKRRKSYADNANALKAQLD 184 (200)
Q Consensus 154 L~~G~EDLAr~AL~rk~~~e~~a~~lq~qld 184 (200)
|..|..+.=..+-.=+.++++++-.+...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 108 INQNIEDINLAAKQFRTNKSEAIIKLAVNII 138 (155)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7777777766666555566655555554443
No 90
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=81.02 E-value=28 Score=28.30 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASED 145 (200)
Q Consensus 132 le~k~~~~~~~i~~ 145 (200)
.+.++.+.+.++..
T Consensus 73 ~e~~l~~a~~ea~~ 86 (173)
T PRK13460 73 YEARLNSAKDEANA 86 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 91
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=80.54 E-value=34 Score=28.93 Aligned_cols=18 Identities=6% Similarity=-0.066 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQA 121 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~ 121 (200)
.++.+.+++..+.+++..
T Consensus 98 A~~~l~e~e~~L~~A~~e 115 (205)
T PRK06231 98 AQQLLENAKQRHENALAQ 115 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 92
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=80.39 E-value=26 Score=27.43 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~v~ 126 (200)
+|+.+..++...-..+.+.+++.+ .-.+....+.+..+.+++......+
T Consensus 16 ~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~ 67 (147)
T TIGR01144 16 VWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEII 67 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554444444444333 3444445555555555555444444
No 93
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.27 E-value=33 Score=32.24 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+...-.+++.+..+++.++.+.....+....+.+.+.+ +.+...+.+.+.+++..+++++...+..+..+-
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKRKGED--AEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666665555554444422 233455556666777777777777666666553
No 94
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.20 E-value=34 Score=28.67 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 123 AQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (200)
Q Consensus 123 A~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ 189 (200)
.........++.+..++...+.+|..+....-+...+.++ .+.+.+.++++.++.+..++..+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~----~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ----EEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666666666666665554433222222 12233444455455444444433
No 95
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.78 E-value=54 Score=32.23 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~ 144 (200)
.+.+-.|..+...|.++.+..+.+.....+++.+++++....+
T Consensus 88 ~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 88 AKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444433333
No 96
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=79.74 E-value=44 Score=31.32 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 162 Ar~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
+.+...+.+.+.+++..+++++...+..+..+-.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777666543
No 97
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=79.59 E-value=58 Score=31.02 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
+..++..++++.++.++.+.++++..+...+..+++.+..+-.+++.++.
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666655555555555544443
No 98
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.40 E-value=50 Score=33.51 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
-++..|.+++++..+.......+......++....+++.+.++++++=.
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333333
No 99
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.22 E-value=77 Score=32.20 Aligned_cols=61 Identities=25% Similarity=0.381 Sum_probs=52.1
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 91 n~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
..++....+-+.-+.+-|.+++.++..+|..+..+.++..++.....++....+.++..-.
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~ 79 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERK 79 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677888999999999999999999999999999999999999888887765543
No 100
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.12 E-value=19 Score=36.59 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 164 ~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
.||+++..++.+.+.+++++++.+..-++|...
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d 245 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTD 245 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 488889999999999999998877777666544
No 101
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=79.03 E-value=22 Score=25.73 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 117 kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~-EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+++..++.+.......+.++..+......+........ .|- -......-.-...++..+...+..++.+...++...
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r 79 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAR 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677777777777777776655555444 232 122222223333344444444444444444444433
No 102
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=78.99 E-value=71 Score=35.97 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 86 VKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 86 vra~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
+...++++-+++++-+ ..++...+++++.+...+..+.+.......++.++...+.++..++....
T Consensus 906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~ 974 (1930)
T KOG0161|consen 906 LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEIN 974 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555443 56666666666666666666666655555555555555555555554443
No 103
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.96 E-value=32 Score=33.18 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=68.4
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 029028 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (200)
Q Consensus 95 dk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~ 174 (200)
|.-.|-.+.|=-.+++++.++.++...=.....+-.+|.++......+|+.--+..+..+.+..+.|.. +++++..
T Consensus 55 DTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~----~~~~~~~ 130 (472)
T TIGR03752 55 DTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKS----ERQQLQG 130 (472)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHH
Confidence 344455677888888999999999988888888888998888888888888887777777777777754 3556777
Q ss_pred HHHHHHHHHHHH
Q 029028 175 NANALKAQLDQQ 186 (200)
Q Consensus 175 ~a~~lq~qld~~ 186 (200)
.+..++.+++..
T Consensus 131 ~l~~l~~~l~~~ 142 (472)
T TIGR03752 131 LIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHhhc
Confidence 777777777543
No 104
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.88 E-value=44 Score=29.23 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=40.2
Q ss_pred HHHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 86 VKSYANAILSSFE-DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 86 vra~in~~ldk~E-DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
|++.....+++.- +.+......|.++..........+..+......+..++..+..++..+..+
T Consensus 174 iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~ 238 (312)
T PF00038_consen 174 IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAK 238 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccc
Confidence 4444444444433 566677777777777777766666666666666666666666666665544
No 105
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.86 E-value=24 Score=26.23 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 123 AQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 123 A~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
...-..++.+..+++.++.+-.........+...| +-+.+...+...+.+++..++.++...+..+..+-
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~--~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAG--EDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666766 22334555566677777777777777766666553
No 106
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=78.85 E-value=31 Score=27.51 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP---~~mLdQ~IReme~~l~kar~~lA~v~ 126 (200)
|+.+..++..+-+.+.+.+++. ..-.++...+.+..+.+++......+
T Consensus 27 ~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii 77 (159)
T PRK13461 27 FDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIV 77 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333332 23344444444555555554444333
No 107
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=78.75 E-value=51 Score=34.82 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 111 me~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
......+++.........-+.+...++.+++.|.+++.
T Consensus 349 ~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~ 386 (1074)
T KOG0250|consen 349 LRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEK 386 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 108
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.68 E-value=78 Score=33.54 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLE-----------NKCKAAEQASEDWYRKAQLALQKG--EEDLAREALKRRKSY 172 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le-----------~k~~~~~~~i~~we~rA~~AL~~G--~EDLAr~AL~rk~~~ 172 (200)
..|.+++.+|.+-...+-........+| ++++++.++++....++...-..+ +++.-.....+..++
T Consensus 748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l 827 (1174)
T KOG0933|consen 748 EEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEEL 827 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333 344555555555555555543322 344444444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 173 ADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 173 e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
+.....++.++.+....++.|+..+
T Consensus 828 ~~e~~~~k~~l~~~~~~~~~l~~e~ 852 (1174)
T KOG0933|consen 828 EKEISSLKQQLEQLEKQISSLKSEL 852 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665543
No 109
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=78.68 E-value=32 Score=27.57 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQ 124 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~ 124 (200)
-.+....+.+..+.+++.....
T Consensus 57 ea~~~~~e~e~~l~~A~~ea~~ 78 (164)
T PRK14473 57 QLANAKRDYEAELAKARQEAAK 78 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 110
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.55 E-value=32 Score=28.84 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029028 165 ALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~ 185 (200)
.+.+...++.+...++.+++.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555553
No 111
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=78.42 E-value=24 Score=32.63 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLA 127 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A 127 (200)
..++.++.++..++..++.+.+
T Consensus 105 ~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 105 AQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433
No 112
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=78.30 E-value=36 Score=27.86 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
.+|++--....++|.++.+.-..+.......+.++.+.+.+.+..-..|+
T Consensus 31 ~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~ 80 (154)
T PRK06568 31 NSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESN 80 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444433333
No 113
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.24 E-value=73 Score=34.95 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHH-----
Q 029028 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK-------GEEDLAREALK----- 167 (200)
Q Consensus 100 P~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~-------G~EDLAr~AL~----- 167 (200)
-..-|++.|..+++...+++..+-++.....+.+..+..+...++.+++.-..+... .+++....|-.
T Consensus 986 ~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l 1065 (1486)
T PRK04863 986 LNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDEL 1065 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHH
Confidence 345566677777777777777777766666666666666666665555544443211 12222222222
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 168 ---------RRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 168 ---------rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
|+..++.+....+..++.++..+.+++..+
T Consensus 1066 ~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~ 1104 (1486)
T PRK04863 1066 HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDY 1104 (1486)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444
No 114
>PRK11020 hypothetical protein; Provisional
Probab=78.14 E-value=32 Score=27.16 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
+..++..+....+....+-..|...||.++-.+...++..++.++..++.+...
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888889999999999999999999999999888876654
No 115
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.13 E-value=53 Score=29.68 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld 184 (200)
+..+.+.++++.+..+.......+-..++.+..++.+++.+++..... ++. .-.........+.-+...++.+.+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~-l~~----eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE-LDE----EEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677777777777777777777777777766665443 221 111455566666666677777777
Q ss_pred HHHHHHHHHHhhhh
Q 029028 185 QQKNVVNNLVSNTR 198 (200)
Q Consensus 185 ~~~~~ve~Lk~~l~ 198 (200)
..+.+++.....|.
T Consensus 117 sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 117 SLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666665553
No 116
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.10 E-value=55 Score=35.07 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
++.+++++..+.+++-.+....+..+++...+..++.++...+..
T Consensus 805 ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 805 EERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555544444444454444443
No 117
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=78.02 E-value=37 Score=27.90 Aligned_cols=18 Identities=6% Similarity=-0.031 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQA 121 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~ 121 (200)
.++.+.+.+..+.+++..
T Consensus 74 A~~~~~e~e~~L~~A~~e 91 (184)
T CHL00019 74 AIEKLEKARARLRQAELE 91 (184)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 118
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=77.71 E-value=32 Score=27.00 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ 189 (200)
=.+.....+...++.+.......+.++..+.....+|..+...-...|-. +.....+..-+..+...+..+...
T Consensus 13 l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 13 LKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLS------IQEIRHYQQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888899999999999999999999999999988776666632 222233344444444444444444
Q ss_pred HHHHH
Q 029028 190 VNNLV 194 (200)
Q Consensus 190 ve~Lk 194 (200)
|..++
T Consensus 87 v~~~~ 91 (146)
T PRK07720 87 VMQAR 91 (146)
T ss_pred HHHHH
Confidence 44433
No 119
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.63 E-value=55 Score=34.57 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
|+++...+++....+..+++++.....+|+..|
T Consensus 968 Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i 1000 (1163)
T COG1196 968 AIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777666554
No 120
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=77.49 E-value=53 Score=29.43 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 169 RKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
..+++.....+...+.....-|+++
T Consensus 237 l~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 237 LGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555444
No 121
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=77.28 E-value=47 Score=30.75 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 029028 142 ASEDWYRKAQLA 153 (200)
Q Consensus 142 ~i~~we~rA~~A 153 (200)
...+|+.+..++
T Consensus 132 a~~~~~R~~~L~ 143 (352)
T COG1566 132 AQNELERRAELA 143 (352)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 122
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=77.20 E-value=60 Score=33.03 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
..-++..|.+++++..+..+....+......+++...+++.+.++++++-...+.+.+++.-+..-..+.+.++-+..++
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677776666666666666666666666666666666666666655555555543333333333444444443
No 123
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.06 E-value=26 Score=31.76 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 161 LAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
-+.++...+.+.+.++......++.....+..|+.
T Consensus 69 ~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 69 QAKEIEEIKEEAEEELAEAEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 34566677788888888888999988888877754
No 124
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.02 E-value=57 Score=33.93 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~ 156 (200)
..++..+.+...+++++...-+..++++.+....+.-..|-.+....+..
T Consensus 488 K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 488 KTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQ 537 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555555555555555444444444444444444433
No 125
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=76.90 E-value=38 Score=27.46 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.+|+.-.....+++.++++...++.......+.++.+.+.++...-..|..
T Consensus 33 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~ 83 (161)
T COG0711 33 KALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKK 83 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555554444443
No 126
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.83 E-value=37 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 172 YADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 172 ~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
++..+..+....+..+..++.|..
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333333334444444443333
No 127
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=76.69 E-value=46 Score=28.25 Aligned_cols=51 Identities=12% Similarity=0.332 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLAS 128 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP---~~mLdQ~IReme~~l~kar~~lA~v~A~ 128 (200)
+|.++..++..+-+.+-+.+++. ..-.+..+.+.++.|.++|......+..
T Consensus 74 ~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 74 ILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766555444444443 3555566666666777766665555543
No 128
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=76.44 E-value=50 Score=28.93 Aligned_cols=7 Identities=0% Similarity=-0.083 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 029028 188 NVVNNLV 194 (200)
Q Consensus 188 ~~ve~Lk 194 (200)
..++..+
T Consensus 193 ~~l~~a~ 199 (334)
T TIGR00998 193 ERLKTAW 199 (334)
T ss_pred HHHHHHH
Confidence 3333333
No 129
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=75.88 E-value=44 Score=27.61 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAI---LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ 129 (200)
Q Consensus 79 f~Rl~~lvra~in~~---ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~ 129 (200)
|.++..++..+-+.+ ++.+++-..-.++...+.+..|.+++..-...+...
T Consensus 53 ~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665554444 444444446666667777777777776666555544
No 130
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.82 E-value=8.5 Score=37.03 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
...|++++|++.++++....+....+++++++++.+++.++.+.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887777777888888888888888888886
No 131
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=75.59 E-value=40 Score=27.03 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILS---SFEDPEKILEQAVLEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 78 if~Rl~~lvra~in~~ld---k~EDP~~mLdQ~IReme~~l~kar~~lA~v~ 126 (200)
+|+.+..++..+-..+-+ .+++-..-.++...+.+..+.+++......+
T Consensus 29 l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii 80 (164)
T PRK14471 29 AWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAIL 80 (164)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444333333 3333334445555555555555555544443
No 132
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=75.30 E-value=16 Score=27.61 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 115 l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
+.++.....++.......+.++..++.++...-
T Consensus 39 ~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~ 71 (132)
T PF00430_consen 39 LEEAEELKEEAEQLLAEYEEKLAEAREEAQEII 71 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444333333
No 133
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.29 E-value=82 Score=30.45 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCHHHHHHHHHHH---------HHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE---DWYRKAQLALQKGEEDLAREALKRR---------KSYADNAN 177 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~---~we~rA~~AL~~G~EDLAr~AL~rk---------~~~e~~a~ 177 (200)
..++++...+.......+....++.++...+...+ .+-..++..|...=+.||-++++++ ..++.-+.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~ 143 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLS 143 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444333222222 1234455556666678888888876 34556677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029028 178 ALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 178 ~lq~qld~~~~~ve~Lk 194 (200)
-++.+++.++..|+++.
T Consensus 144 Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 144 PLREQLDGFRRQVQDSF 160 (475)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 77888888888777654
No 134
>PLN02718 Probable galacturonosyltransferase
Probab=75.28 E-value=8.8 Score=37.94 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~ 178 (200)
+|..+-|-.++.|++++..||.=+ .+|..+--..=..++...|.+.+.-.-.| ..|.||=..+..+....+..+..
T Consensus 158 ~~~~~~d~~v~~~~dql~~ak~y~--~~a~~~~~~~~~~el~~~i~e~~~~l~~~--~~d~~lp~~~~~~~~~m~~~~~~ 233 (603)
T PLN02718 158 QPRRATDEKVKEIRDKIIQAKAYL--NLAPPGSNSQLVKELRLRTKELERAVGDA--TKDKDLSKSALQRMKSMEVTLYK 233 (603)
T ss_pred CcccCcHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhcc--cCCCCCCHhHHHHHHHHHHHHHH
Confidence 566888999999999999999876 56665555666667777777777665555 55666989999999888888886
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 029028 179 LKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 179 lq~qld~~~~~ve~Lk~~l 197 (200)
-+.........+.+|+..|
T Consensus 234 a~~~~~d~~~~~~klr~~~ 252 (603)
T PLN02718 234 ASRVFPNCPAIATKLRAMT 252 (603)
T ss_pred HHhccccHHHHHHHHHHHH
Confidence 6666666666665555543
No 135
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.21 E-value=1.3e+02 Score=32.64 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
+.++..++..++..+.........++.++..++.+.+..+.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~ 320 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRL 320 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555544444444443
No 136
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=74.87 E-value=58 Score=28.56 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=64.8
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 029028 98 EDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (200)
Q Consensus 98 EDP~--~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~ 175 (200)
-||. .||++.+. .+.++......+.....+.-+.+..++..+..++.+-..++.+-+ =--..|..+...
T Consensus 115 ~D~~wqEmLn~A~~----kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSr-----PYfe~K~~~~~~ 185 (239)
T PF05276_consen 115 FDPAWQEMLNHATQ----KVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSR-----PYFELKAKFNQQ 185 (239)
T ss_pred ccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Confidence 3775 77776654 466777777888888889999999999999999999998888744 344555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029028 176 ANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 176 a~~lq~qld~~~~~ve~Lk~~l 197 (200)
+...+..++.++..|..-|..+
T Consensus 186 l~~~k~~v~~Le~~v~~aK~~Y 207 (239)
T PF05276_consen 186 LEEQKEKVEELEAKVKQAKSRY 207 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655555443
No 137
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=74.64 E-value=16 Score=27.93 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.++++++++...++.++++.+....|+.+++.++...+-.++.|+.-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~ 74 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNE 74 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 46788888888888888888888888888888877555666666653
No 138
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.57 E-value=69 Score=32.02 Aligned_cols=86 Identities=14% Similarity=0.290 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~q 182 (200)
.....|.+++..+.+.+.......+.-.++++++..++.+.+....+...=+..++|- ...+..+..|+..
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei---------~~~~~~I~~L~~~ 489 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREI---------RARDRRIERLEKE 489 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555333333332 2234444555555
Q ss_pred HHHHHHHHHHHHhhh
Q 029028 183 LDQQKNVVNNLVSNT 197 (200)
Q Consensus 183 ld~~~~~ve~Lk~~l 197 (200)
|.+....++.|+..|
T Consensus 490 L~e~~~~ve~L~~~l 504 (652)
T COG2433 490 LEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 139
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=74.52 E-value=1e+02 Score=31.48 Aligned_cols=77 Identities=9% Similarity=0.146 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHH------HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 76 MNLFDRLARVVK------SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 76 Msif~Rl~~lvr------a~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
-+|.++|..-++ ...++.|.+++.-..=|.+.+++-++--...+..+-+..+..++.+..|...+..+++++.+
T Consensus 473 s~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~ 552 (961)
T KOG4673|consen 473 SAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQ 552 (961)
T ss_pred HHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 457777764443 33355566666556667777777777777777788888888889999999989999999888
Q ss_pred HHH
Q 029028 150 AQL 152 (200)
Q Consensus 150 A~~ 152 (200)
+..
T Consensus 553 ~~a 555 (961)
T KOG4673|consen 553 ALA 555 (961)
T ss_pred HHH
Confidence 754
No 140
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.40 E-value=45 Score=27.45 Aligned_cols=26 Identities=8% Similarity=0.145 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
..++++++..+.+++.++.|.+.|..
T Consensus 164 ~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 164 EKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444444433
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.28 E-value=87 Score=30.26 Aligned_cols=105 Identities=10% Similarity=0.131 Sum_probs=50.5
Q ss_pred HHHHHHhh-ccCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 029028 88 SYANAILS-SFEDPEKILEQAVLEMN---DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (200)
Q Consensus 88 a~in~~ld-k~EDP~~mLdQ~IReme---~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr 163 (200)
..+.++.+ ++|+-..-++..|.+.. .+...++...-.+.....++..+++...++..... -....|.++.+-.-.
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~-E~n~~l~knq~vw~~ 417 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER-EENKKLIKNQDVWRG 417 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHH
Confidence 34444444 55555444443333333 23333333333333334444455555555444433 344556666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 164 EALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 164 ~AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
.+-....++.+.....+.++..+++|+-+|
T Consensus 418 kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 418 KLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555555555555555555555544
No 142
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=74.00 E-value=78 Score=29.65 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 128 ~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
+...++.++.+.+.++.++..+-...+.. --.....+..+++.+....+.++...+...+.|+..+
T Consensus 169 ql~~~~~~L~~ae~~l~~f~~~~~~~~~~----~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 169 QIKTYEKKLEAAENRLKAFKQENGGILPD----QEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555554332211111 1123456677777777777777777777777776654
No 143
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=73.70 E-value=1.1 Score=44.59 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE-DLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~E-DLAr~AL~rk~~~e~~a~~lq~ 181 (200)
.+...++++++.+.+..............++.++.+++.+.+.|...|..|-.--|| |..|+-..+...++..++.|+.
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKk 322 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKK 322 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666788888999999999999999998776666 9999999999999999999998
Q ss_pred HHHH---HHHHHHHHHh
Q 029028 182 QLDQ---QKNVVNNLVS 195 (200)
Q Consensus 182 qld~---~~~~ve~Lk~ 195 (200)
-++. ++.+|..|+.
T Consensus 323 KLed~~~lk~qvk~Lee 339 (713)
T PF05622_consen 323 KLEDLEDLKRQVKELEE 339 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7766 4555555544
No 144
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.47 E-value=31 Score=24.75 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
...|...+.++++.-.... .....++.+...+..+-..|+.+...-|.
T Consensus 20 i~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333 55555666666666666677766665543
No 145
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=73.35 E-value=58 Score=27.85 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 90 in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
+...++.+||-..-|-..|.++..++....+++ -..+-++.++.++...+..++....
T Consensus 27 L~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal----~~aK~l~eEledLk~~~~~lEE~~~ 84 (193)
T PF14662_consen 27 LQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL----QKAKALEEELEDLKTLAKSLEEENR 84 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554443222 2223334444444444444443333
No 146
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=73.20 E-value=61 Score=30.89 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC 136 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~ 136 (200)
..-|+..|+++++++.+++..+..+.+..+.++.--
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377888888888888888888888887777775544
No 147
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=73.12 E-value=63 Score=28.17 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 029028 136 CKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 136 ~~~~~~~i~~we~rA~~AL~~G 157 (200)
+++++.+++....+++..+...
T Consensus 92 l~~A~~ea~~~~~~a~~~ie~E 113 (250)
T PRK14474 92 LNEAREDVATARDEWLEQLERE 113 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 148
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=72.90 E-value=47 Score=26.59 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~ED---P~~mLdQ~IReme~~l~kar~~lA~v~ 126 (200)
+|..+..++..+-..+.+.+++ -..-.+....+.++.+.+++......+
T Consensus 43 l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 43 LYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333322 234444444455555555554444333
No 149
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.76 E-value=1.1e+02 Score=32.80 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ql 183 (200)
+++.|+.+.-.+....+.++.+.-....+++++...+.+++.+.... .|.+.-+-+.-.+....++.+..++.++
T Consensus 919 l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~-----~~~~~k~~E~~~~~~e~~~~~~E~k~~~ 993 (1293)
T KOG0996|consen 919 LEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEEL-----KGLEEKAAELEKEYKEAEESLKEIKKEL 993 (1293)
T ss_pred HHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444445555555555444444333 3333333333334444444444444444
Q ss_pred HHHHHHHHHH
Q 029028 184 DQQKNVVNNL 193 (200)
Q Consensus 184 d~~~~~ve~L 193 (200)
......++.+
T Consensus 994 ~~~k~~~e~i 1003 (1293)
T KOG0996|consen 994 RDLKSELENI 1003 (1293)
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 150
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=72.36 E-value=62 Score=27.73 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029028 130 KRLENKCKAAEQASEDW 146 (200)
Q Consensus 130 k~le~k~~~~~~~i~~w 146 (200)
..++.++......+..+
T Consensus 144 ~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333333333333
No 151
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=71.97 E-value=53 Score=26.77 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=38.2
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 029028 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (200)
Q Consensus 99 DP~-~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~E 159 (200)
+|. .+|+.--..+.+++.++.....++.......+.++.+.+.++.+.-..|+.--++-.+
T Consensus 45 kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~ 106 (167)
T PRK08475 45 KPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQ 106 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 6666666666666666666666666666666666666666666666666654444333
No 152
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=71.93 E-value=82 Score=28.95 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 029028 100 PEKILEQAVLEMNDDLVKMRQATAQV----LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (200)
Q Consensus 100 P~~mLdQ~IReme~~l~kar~~lA~v----~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~ 174 (200)
--..|...+.|.+..+.+++.-++.. ......-+.++..+...|.+.-++|...=..|+-+-|..+..+...+..
T Consensus 84 ~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 84 ALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 34677777777777777777766665 2222222678999999999999999999999999999999988888776
No 153
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.85 E-value=65 Score=27.73 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 116 ~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
.+..+.+...-.+...+..+|..+..+++.++.
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555444
No 154
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.81 E-value=7.5 Score=29.55 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=8.4
Q ss_pred CCCcccccCCCc
Q 029028 60 SRSHCYRQGGGA 71 (200)
Q Consensus 60 ~~~~~~~~~~~~ 71 (200)
++..||+..|+.
T Consensus 48 ~d~~vyk~VG~v 59 (110)
T TIGR02338 48 DDTPVYKSVGNL 59 (110)
T ss_pred CcchhHHHhchh
Confidence 466788877773
No 155
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=71.47 E-value=45 Score=25.80 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
.+|++--..+.+++.++.....++.......+.++...+.++...-+.|+....
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~ 85 (140)
T PRK07353 32 KVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEAD 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566655555555555555555555555555555444444333
No 156
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=71.14 E-value=78 Score=28.36 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 177 NALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 177 ~~lq~qld~~~~~ve~Lk 194 (200)
...+.++...+..++.++
T Consensus 249 ~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 249 TEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 157
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=71.01 E-value=96 Score=29.36 Aligned_cols=55 Identities=7% Similarity=0.136 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~ 156 (200)
.+|++--..+.+++.++.+.-.++...+.+.+.++.+.+.++++.-+.|+..-++
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~ 82 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAER 82 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444445555555554444444444444555555555555544444444333
No 158
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=70.70 E-value=56 Score=26.56 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
.+|++--..+.+++.++.....++.......+.++.+++.++.+.-..|+
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~ 94 (175)
T PRK14472 45 SALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGK 94 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444433333
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.21 E-value=69 Score=27.37 Aligned_cols=18 Identities=0% Similarity=0.163 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~ 126 (200)
-+++.++.+++..++.+.
T Consensus 96 p~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 96 PDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555554444443
No 160
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.09 E-value=58 Score=26.48 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
..+-+-...+...+..+..+..+...++.++.+....+.++... ..+.|+|-...-.=+..+...-..+++++..
T Consensus 6 ~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~-----~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 6 KIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS-----AKDNEELKKQIEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555566666666666666666666552 3344555433333333333333344444333
No 161
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=70.09 E-value=18 Score=28.15 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCCHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA-----QLALQKGEEDLAR 163 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA-----~~AL~~G~EDLAr 163 (200)
.-|++.|.++-+++...+..++.++-+-..|+.+-..+++.+.+.+... ..-+..|.+.||+
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~~~~~~g~~NL~~ 77 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKKKKEGEGKDNLAR 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHH
Confidence 4578888899999999999999999999999998888888888763211 0112346677765
No 162
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=70.03 E-value=1e+02 Score=29.33 Aligned_cols=118 Identities=25% Similarity=0.269 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
|=.-+..+++-..|++-.....-+..+.--|+++++...+..-.++..+-+-...+..+..++..|.+-+.-.+.|.-.=
T Consensus 250 LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRl 329 (421)
T KOG2685|consen 250 LREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRL 329 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Confidence 44455566666677777777778889999999999999999999999998888888888888888888777777665432
Q ss_pred C-----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 158 E-----------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 158 ~-----------EDLAr~AL-~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
+ -|.|...| .+...+.+.+..|+..|++.+.....|..
T Consensus 330 e~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~ 379 (421)
T KOG2685|consen 330 ENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN 379 (421)
T ss_pred HHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 26665554 56778888899999999988887777654
No 163
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=69.37 E-value=64 Score=26.73 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ql 183 (200)
++.=..++...+..+......|+..++-+-|+..+.+-.=+..-...+....
T Consensus 116 L~~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei~~~~ 167 (173)
T PRK01773 116 LTAFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEIERVE 167 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666677777778888999999988888887766655554444333
No 164
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.18 E-value=1.2e+02 Score=29.81 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
.|.++.+.+.++.+.+....+....++.++..+..++++.+.+.
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666655555544
No 165
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.15 E-value=63 Score=30.82 Aligned_cols=71 Identities=18% Similarity=0.301 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
.-..++.+..+.+.++.+.....+..-.++.+|.+ -+...+.+...+.++++.++.++++.+...+++--.
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ 104 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGED-DAEELIAEVKELKEKLKELEAALDELEAELDTLLLT 104 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555577777777 677788888888999999999888888888776543
No 166
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=69.07 E-value=58 Score=26.09 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
.++.-+.++++...+....+....-.-..++.++..+...+......+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443333
No 167
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.89 E-value=76 Score=27.34 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAIL---SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQK-----RLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 79 f~Rl~~lvra~in~~l---dk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k-----~le~k~~~~~~~i~~we~rA 150 (200)
|+.+..++..+-..+. +.+|+-..-.+....+.+..+.+++......+...+ ..+.-+++++.+++....+|
T Consensus 27 ~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a 106 (246)
T TIGR03321 27 YRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKW 106 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455544433333 333333344555555666666666655555544322 23344566666666666666
Q ss_pred HHHHhcCCH
Q 029028 151 QLALQKGEE 159 (200)
Q Consensus 151 ~~AL~~G~E 159 (200)
+..+....+
T Consensus 107 ~~~ie~E~~ 115 (246)
T TIGR03321 107 QEALRREQA 115 (246)
T ss_pred HHHHHHHHH
Confidence 666655544
No 168
>PRK11281 hypothetical protein; Provisional
Probab=68.81 E-value=62 Score=34.42 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLEN---KCKAAEQASEDWYRKAQLALQKGEEDLAREALK-RRKSYADNAN 177 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~---k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~-rk~~~e~~a~ 177 (200)
+.+-|.+++.-+-+++..+...+..+.+++++. ++.++.+++++..+.......+--+.+....|+ +..+.++++.
T Consensus 59 k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq 138 (1113)
T PRK11281 59 KLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQ 138 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 556666666666666666655555444444433 344444444433321111110111111112222 2245555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029028 178 ALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 178 ~lq~qld~~~~~ve~Lk 194 (200)
+.++++.+.+.++..+.
T Consensus 139 ~~Q~~La~~NsqLi~~q 155 (1113)
T PRK11281 139 NAQNDLAEYNSQLVSLQ 155 (1113)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 55555555554444443
No 169
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=68.57 E-value=67 Score=26.64 Aligned_cols=57 Identities=9% Similarity=0.046 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 127 ASQKRLENKCKAAEQASEDWYRKAQLALQK--GEEDLAREALKRRKSYADNANALKAQL 183 (200)
Q Consensus 127 A~~k~le~k~~~~~~~i~~we~rA~~AL~~--G~EDLAr~AL~rk~~~e~~a~~lq~ql 183 (200)
..+...-..+..+...+++-..+...+... ++.+-+..+..+...++......+..+
T Consensus 128 ~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~ 186 (236)
T PF09325_consen 128 NRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF 186 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333 233333334444444444443333333
No 170
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=68.56 E-value=83 Score=27.65 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK-------GEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (200)
Q Consensus 120 ~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~-------G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve 191 (200)
..++...+....++.+++.++.++++....+..=..- |.-.-++.+-.....++.+++.++++++.....++
T Consensus 135 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 135 AQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3555666666677777777777777666555544333 44566777777777777777777777666555554
No 171
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=68.44 E-value=92 Score=28.59 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 029028 111 MNDDLVKMRQATA 123 (200)
Q Consensus 111 me~~l~kar~~lA 123 (200)
+..++.+.+..++
T Consensus 259 l~~~l~~le~~l~ 271 (444)
T TIGR03017 259 LKTDIARAESKLA 271 (444)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 172
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=68.39 E-value=65 Score=26.43 Aligned_cols=52 Identities=6% Similarity=0.145 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.+|++--..+.+.+.++......+.......+.++..++.++...-..|+..
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 102 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSE 102 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444455555555555555555555555555555555555444444443
No 173
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=68.23 E-value=38 Score=23.67 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP----~~mLdQ~IReme~~l~kar~~lA~v~-A~~k~le~k~~~~~~~i~~we~rA 150 (200)
|..+..-|...++.+-....+. ..-++..|.++++-|.++.-++-.+= ..+..+..++..++.+..++....
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555554332211 14445555555555555555444332 455556666666666666665543
No 174
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=68.16 E-value=75 Score=27.01 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCH
Q 029028 78 LFDRLARVVKSYANAILSSFEDP 100 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP 100 (200)
.+.++..+..-..+.-...+.||
T Consensus 78 ~~~ki~~~~~~qa~~d~~~l~e~ 100 (224)
T cd07623 78 VEEKIEQLHGEQADTDFYILAEL 100 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444444443
No 175
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=68.09 E-value=87 Score=30.65 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK-------AQLALQKGEEDLARE 164 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r-------A~~AL~~G~EDLAr~ 164 (200)
..||-.+.|+.++|...|+..+..-++++..++++..--....+|-.. |.-||.+..|+-...
T Consensus 95 ~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k 164 (531)
T PF15450_consen 95 QQLDKRLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQK 164 (531)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHh
Confidence 679999999999999999999999999999999887766666665332 344455544444333
No 176
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=67.87 E-value=67 Score=26.33 Aligned_cols=26 Identities=4% Similarity=0.141 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLA 127 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A 127 (200)
.-.++...+.++.+.+++......+.
T Consensus 75 ~eA~~~l~e~e~~L~~A~~ea~~Ii~ 100 (184)
T PRK13455 75 EEAQTLLASYERKQREVQEQADRIVA 100 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555544444433
No 177
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=67.44 E-value=56 Score=25.27 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQV 125 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v 125 (200)
.-.++.+.+.++.+.+++......
T Consensus 53 ~ea~~~~~~~e~~L~~a~~ea~~i 76 (140)
T PRK07353 53 AEAEKLEAQYEQQLASARKQAQAV 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 178
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.37 E-value=84 Score=27.30 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHHHH----HHHhhccCCHHHHHHH-------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 76 MNLFDRLARVVKSYA----NAILSSFEDPEKILEQ-------AVLE-----MNDDLVKMRQATAQVLASQKRLENKCKAA 139 (200)
Q Consensus 76 Msif~Rl~~lvra~i----n~~ldk~EDP~~mLdQ-------~IRe-----me~~l~kar~~lA~v~A~~k~le~k~~~~ 139 (200)
|++|.||+.-.+... .+.|+++-+-+.||+- -|.+ ++.--.+-++..-++.-.+++.|+++..+
T Consensus 1 ms~~~~~FG~~k~~~~~t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qi 80 (221)
T KOG1656|consen 1 MSMFSRLFGGMKQEAKPTPQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQI 80 (221)
T ss_pred CcHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777775542221 3455555555544431 1111 22223344555667777888999999888
Q ss_pred HHHHHHHHHH
Q 029028 140 EQASEDWYRK 149 (200)
Q Consensus 140 ~~~i~~we~r 149 (200)
..-....+.+
T Consensus 81 dG~l~tie~Q 90 (221)
T KOG1656|consen 81 DGTLSTIEFQ 90 (221)
T ss_pred hhHHHHHHHH
Confidence 8777777765
No 179
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=67.30 E-value=53 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
++..++..++.++..+.....++..+...+
T Consensus 94 ~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 94 RIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666655544
No 180
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.26 E-value=58 Score=25.39 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C-------------------
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK--------G------------------- 157 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~--------G------------------- 157 (200)
++.++++...+.+.+..+.........++..+.++...++.++.--.. .. |
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~--~~~~e~lvplg~~~yv~~~v~~~~kV~v~l 82 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSK--GEGKETLVPIGAGSFVKAKVKDKDKVIVSL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCeEEEEcCCCcEEEEEecCCCeEEEEc
Confidence 456677777777788888887777778888777777777666532110 01 2
Q ss_pred --------CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 158 --------EEDLAREALK-RRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 158 --------~EDLAr~AL~-rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
+-+=|..-+. ++..++..+..++.++.....+++.+...+.
T Consensus 83 G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 83 GAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555 4556777777777777777777777666543
No 181
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=67.17 E-value=68 Score=26.15 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~ 156 (200)
.+|++--..+.+++.++......+.......+.++.+++.++...-..|+..-..
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~ 99 (173)
T PRK13453 45 DVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQ 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555555555555555555555555544444444333
No 182
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.06 E-value=74 Score=26.57 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED-----WYRKAQLALQKG--EEDLAREALKRRKSYA 173 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~-----we~rA~~AL~~G--~EDLAr~AL~rk~~~e 173 (200)
..-++..|.+++..+..+...--.........+.++......+.. -++-|+.|+..- -++.+...-.....+.
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~ 111 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAE 111 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666667767666666666666666666666666555543 356677766532 2344444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029028 174 DNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
..+..++.++..++..+.+++.
T Consensus 112 ~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 112 AQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 183
>PRK09546 zntB zinc transporter; Reviewed
Probab=66.97 E-value=93 Score=27.64 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=42.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 029028 87 KSYANAILSSFEDPEKILEQAVLEMNDDLVK----MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (200)
Q Consensus 87 ra~in~~ldk~EDP~~mLdQ~IReme~~l~k----ar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLA 162 (200)
-.-++.++|...+.-..++..+.++++++-+ .++.+......-..+.+-+.....-+..+.......+.......-
T Consensus 145 ~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~~~l 224 (324)
T PRK09546 145 VDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDRRRM 224 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 3334444444445555666666666665531 123444444444444445555555444444321111222222333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029028 163 REALKRRKSYADNANALKA 181 (200)
Q Consensus 163 r~AL~rk~~~e~~a~~lq~ 181 (200)
+....+..++.+.++.+..
T Consensus 225 ~Dv~d~~~~~~~~l~~~~~ 243 (324)
T PRK09546 225 QDIADRLGRGLDDLDACIA 243 (324)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 184
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=66.91 E-value=59 Score=25.37 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=52.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029028 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSY 172 (200)
Q Consensus 95 dk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~ 172 (200)
+..+|-..+=++.+.++.+.++.-....|. ++.++-++....+|..+...|+.||-.|+.+--.=|+.+--.+
T Consensus 3 ~~~~~~~~~~d~~~ee~~~~~q~~~e~eA~-----kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i 75 (109)
T PHA02571 3 DESTDVEELTDEEVEELLSELQARNEAEAE-----KKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDI 75 (109)
T ss_pred chhcchhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555566666776666665555543 4556678889999999999999999999988877777765543
No 185
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=66.83 E-value=1e+02 Score=28.04 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~ 137 (200)
|.-.|.++++.|..-++.+.+.......++.+++
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 186
>PLN02678 seryl-tRNA synthetase
Probab=66.78 E-value=1.2e+02 Score=28.93 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 163 r~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.+..++...+.+++..++.+++..+..+..+-.
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777776666543
No 187
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.70 E-value=1.4e+02 Score=30.45 Aligned_cols=99 Identities=14% Similarity=0.315 Sum_probs=76.6
Q ss_pred HHHHHHHHHH-------HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 81 RLARVVKSYA-------NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 81 Rl~~lvra~i-------n~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.|.++++||= ..+=.+.|+-..|+-..+-.++..|...+...|.--..+-.+..+.+++..++++++.+...|
T Consensus 608 TLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aA 687 (717)
T PF09730_consen 608 TLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAA 687 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677663 445577888888999999999999999999999888888999999999999999998887766
Q ss_pred HhcCC--HHHHHHHHHHHHHHHHHHHHH
Q 029028 154 LQKGE--EDLAREALKRRKSYADNANAL 179 (200)
Q Consensus 154 L~~G~--EDLAr~AL~rk~~~e~~a~~l 179 (200)
=.--+ .-|=|-|++.|..+-.+++.+
T Consensus 688 EdEKKTLNsLLRmAIQQKLaLTQRLEdl 715 (717)
T PF09730_consen 688 EDEKKTLNSLLRMAIQQKLALTQRLEDL 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33211 357777888887777777665
No 188
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=66.44 E-value=1.4e+02 Score=29.63 Aligned_cols=40 Identities=5% Similarity=0.122 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLAS-------QKRLENKCKAAEQASED 145 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~-------~k~le~k~~~~~~~i~~ 145 (200)
..|.+++.++.+.+..+++.... -..++.++++++.++++
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777766655553 23444455555544443
No 189
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.42 E-value=1e+02 Score=30.50 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~ 144 (200)
.+.+.+++++|.+++..+..+....+.+...+.++..+.+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666555555555555555544444433
No 190
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=66.37 E-value=1e+02 Score=27.98 Aligned_cols=41 Identities=10% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
.-++...+.+++.++....-....++.+++.++..+..++.
T Consensus 69 ~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 69 STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666667777777766665543
No 191
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=66.26 E-value=29 Score=30.49 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (200)
.+++.++.++...+.+......+||..+......
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677777777777777777777788777777754
No 192
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=66.25 E-value=63 Score=25.42 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQ 124 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~ 124 (200)
|+.+.+++..+-..+.+.+++.+ .-.++.+.+.+..+.+++.....
T Consensus 26 ~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~ 74 (156)
T PRK05759 26 WPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAE 74 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444554444433333333332 33333334444444444443333
No 193
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.09 E-value=1.4e+02 Score=29.52 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
.-|...|.++..++.++...+.......++++.++.+.....++++.
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666555555555554443
No 194
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=66.09 E-value=81 Score=26.66 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
..|++.++|.+..+.+...+|........-..+-..........+..-...
T Consensus 70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~ 120 (188)
T PF05335_consen 70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKA 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788877777777777776666666655555555555555444333
No 195
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=65.54 E-value=72 Score=25.85 Aligned_cols=50 Identities=10% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLAS 128 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~v~A~ 128 (200)
|+.+..++..+-..+-+.+.+.+ ...++...+.+..+.+++......+..
T Consensus 28 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~ 80 (161)
T COG0711 28 WKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQ 80 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444444443 445555666666666666555444443
No 196
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=65.34 E-value=20 Score=31.61 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=30.0
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 98 EDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (200)
Q Consensus 98 EDP~--~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~ 145 (200)
.||+ .+|.+.|+.-=+..--+-+.+--.....++++.++++++.++..
T Consensus 24 rD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 24 RDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred CCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3775 77777777766666666666655555555555555555555543
No 197
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=65.11 E-value=74 Score=25.84 Aligned_cols=48 Identities=8% Similarity=0.205 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFE---DPEKILEQAVLEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~E---DP~~mLdQ~IReme~~l~kar~~lA~v~ 126 (200)
|+.+..++..+-+.+.+.++ +-..-.++...+.+..+.+++......+
T Consensus 38 ~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 88 (173)
T PRK13460 38 WDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIV 88 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555444333333333 2233444444455555555555444443
No 198
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=65.06 E-value=45 Score=23.34 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 029028 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (200)
Q Consensus 98 EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~ 177 (200)
.||+=+.+|. ++++.|..+... .....+..=..++...+..+......++..++-+-|+..+.+..=+..-.+
T Consensus 2 ~d~eFLme~m--E~rE~le~~~~~-----~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 2 MDPEFLMEQM--ELREELEEAQNS-----DDEAELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLE 74 (78)
T ss_dssp S-HHHHHHHH--HHHHHHHHHCCC-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 4676555543 556666666321 111333444455566666777777778889999999999988866555444
Q ss_pred HH
Q 029028 178 AL 179 (200)
Q Consensus 178 ~l 179 (200)
.+
T Consensus 75 ~i 76 (78)
T PF07743_consen 75 EI 76 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 199
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=65.01 E-value=1.1e+02 Score=28.11 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL-AREALKRRKSYADNANALKAQLDQQKN 188 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDL-Ar~AL~rk~~~e~~a~~lq~qld~~~~ 188 (200)
...+.+..+.+.+=-++-.-.-+.+-++.+..+++-+-.-++.|++.|++.- -++++ .++......+..|++++++
T Consensus 240 ~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv---~el~k~~~~f~~qleELee 316 (336)
T PF05055_consen 240 KQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVV---KELKKNVESFTEQLEELEE 316 (336)
T ss_pred HHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence 3344444455555555566667777888888999999999999999997542 23333 3444555556666666665
Q ss_pred HHH
Q 029028 189 VVN 191 (200)
Q Consensus 189 ~ve 191 (200)
.+.
T Consensus 317 hv~ 319 (336)
T PF05055_consen 317 HVY 319 (336)
T ss_pred HHH
Confidence 554
No 200
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.83 E-value=1.5e+02 Score=29.24 Aligned_cols=94 Identities=7% Similarity=0.054 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC-HHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA-LQKGE-EDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A-L~~G~-EDLAr~AL~rk~~~e~~a~~lq 180 (200)
++.+.+||.+.++......+....-+..+...+...+..++.+.+++++.. .++.. +.+-.+...+..+++++...++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 566778888888888888888877777778888888888888888888764 33322 2333445555566666777777
Q ss_pred HHHHHHHHHHHHHHhh
Q 029028 181 AQLDQQKNVVNNLVSN 196 (200)
Q Consensus 181 ~qld~~~~~ve~Lk~~ 196 (200)
.++.+..+....-...
T Consensus 282 DkyAE~m~~~~EaeeE 297 (596)
T KOG4360|consen 282 DKYAECMQMLHEAEEE 297 (596)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766655554444333
No 201
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=64.58 E-value=78 Score=28.20 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 029028 181 AQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 181 ~qld~~~~~ve~Lk~~l 197 (200)
.++...+..++..+.++
T Consensus 190 a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 190 AQRAAREAALAIAELHL 206 (346)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 202
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=64.48 E-value=73 Score=29.25 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 029028 108 VLEMNDDLVKM 118 (200)
Q Consensus 108 IReme~~l~ka 118 (200)
+.+++.++..+
T Consensus 101 l~~A~a~l~~a 111 (390)
T PRK15136 101 FEKAKTALANS 111 (390)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 203
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=64.47 E-value=73 Score=25.52 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=36.5
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 99 DP~-~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
.|. .+|+.--..+.+++..+...-..+.......+.++.+++.++...-..|+....+-
T Consensus 31 kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~ 90 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQ 90 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 353 56666666666666666666666666666666666666666666666666544433
No 204
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=64.13 E-value=1.2e+02 Score=30.26 Aligned_cols=19 Identities=0% Similarity=-0.090 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA 150 (200)
..++.+.++.+++++++++
T Consensus 350 a~~~~~~L~~~l~~~~~~~ 368 (754)
T TIGR01005 350 AQARESQLVSDVNQLKAAS 368 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 205
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=64.11 E-value=4.9 Score=30.72 Aligned_cols=65 Identities=9% Similarity=0.226 Sum_probs=25.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 88 a~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.-|++.|+.+.+-...|...+.+++.++..+...+.........+.+.+..++..+++....|..
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~ 85 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEE 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 35677777777777777778888888888888888777777777777777777776666665554
No 206
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.04 E-value=1.5e+02 Score=28.86 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (200)
Q Consensus 119 r~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~ 187 (200)
-.+++.+.....+++.+..+++ ...++..++..+|.-|...||+- -........+...+..|++...
T Consensus 254 ~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL-~~~l~~~~~~~~~ltqqwed~R 320 (521)
T KOG1937|consen 254 LVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKL-MGKLAELNKQMEELTQQWEDTR 320 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555556666666666 77788889999999999998863 2334444555555555555543
No 207
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.99 E-value=70 Score=25.14 Aligned_cols=75 Identities=16% Similarity=0.307 Sum_probs=51.5
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 029028 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQK---RLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 73 ~~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k---~le~k~~~~~~~i~~we~r 149 (200)
|.-..++.||...|+-. |--...+.+.|..++..-..++..+.+.+.... ....++..++.++++++.|
T Consensus 12 ~~~~~~ve~L~s~lr~~--------E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRL--------EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred CchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888887666543 333467788888888888888888888777763 3445666777777777777
Q ss_pred HHHHHh
Q 029028 150 AQLALQ 155 (200)
Q Consensus 150 A~~AL~ 155 (200)
=..+|.
T Consensus 84 y~t~Le 89 (120)
T PF12325_consen 84 YQTLLE 89 (120)
T ss_pred HHHHHH
Confidence 666654
No 208
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=63.74 E-value=1.1e+02 Score=27.29 Aligned_cols=8 Identities=38% Similarity=0.293 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 029028 177 NALKAQLD 184 (200)
Q Consensus 177 ~~lq~qld 184 (200)
...+++++
T Consensus 193 ~~~~a~l~ 200 (346)
T PRK10476 193 AAREAALA 200 (346)
T ss_pred HHHHHHHH
Confidence 33333333
No 209
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.70 E-value=1.7e+02 Score=29.42 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 116 ~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
.+.+..+.+...+..-|+..+.+++..+++++.
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444443333
No 210
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.59 E-value=1.6e+02 Score=29.20 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLA 162 (200)
+..|+.-++.+++++.+.+..+........-++..++.+..+++.-+...+ +|++.+++|=
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e-~lq~~~d~Lk 321 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIE-KLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 477888888899999999988888888888888888888888877776654 3455555543
No 211
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=63.43 E-value=97 Score=30.39 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=28.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 89 ~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
...+++++..=+ . ...+.+++..+.+.++..-..+.+--. +.+++++++++++.+..
T Consensus 150 ~~~eil~~~~L~--T-~~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 150 DPRALLKGEDLK--T-VETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKK 206 (555)
T ss_pred CHHHHhccCCCC--c-HHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhc
Confidence 456667653311 1 134445555555555444443333321 55666666666666653
No 212
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.31 E-value=73 Score=25.15 Aligned_cols=92 Identities=12% Similarity=0.271 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ---LALQKGEEDLAREALKRRKSYADNANA 178 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~---~AL~~G~EDLAr~AL~rk~~~e~~a~~ 178 (200)
.-|...++.++.++......+.+.......+++++..........+.+.. .+++...|++.|- +..+......
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl----k~~~~~~~tq 130 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL----KNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 44444555555555555555555554444455544444444444433333 2344444555432 3344555555
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 029028 179 LKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 179 lq~qld~~~~~ve~Lk~~l 197 (200)
+...+..-+.++++|+..|
T Consensus 131 ~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666666666777777655
No 213
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=63.04 E-value=61 Score=24.20 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
.|..+.++|.+.+...... -.+|+..=+.....+.+....++.+...-..++.++.++..
T Consensus 4 ~f~~~~~~v~~el~~t~~d----~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~---------------- 63 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNED----YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQP---------------- 63 (99)
T ss_pred HHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 5888888888887766644 34666655666666666666666666666666666555443
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 158 ~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
-+....++++++..++.....+..-...|...++
T Consensus 64 -------~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 64 -------YLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556677777777777777777777766654
No 214
>PRK07737 fliD flagellar capping protein; Validated
Probab=62.85 E-value=71 Score=30.69 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=7.2
Q ss_pred cHHHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYAN 91 (200)
Q Consensus 77 sif~Rl~~lvra~in 91 (200)
||..||.+++...+.
T Consensus 414 Gia~~l~~~l~~~~~ 428 (501)
T PRK07737 414 GIARRLRDTLKETIK 428 (501)
T ss_pred cHHHHHHHHHHHHHh
Confidence 345555555544443
No 215
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=62.80 E-value=96 Score=32.80 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=50.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 029028 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA--SEDWYRKAQLALQKGEEDLAREALK 167 (200)
Q Consensus 90 in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~--i~~we~rA~~AL~~G~EDLAr~AL~ 167 (200)
+..++|.+---.+-|+.-+.|.-.+|-+....++++++.++.+++++-....- --.+.+-.+.+++...|.+=+..-+
T Consensus 860 ~~~lad~~~~qs~qln~p~ed~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~g~le~~l~~~iEk~lks~~d~~~~rl~e 939 (1283)
T KOG1916|consen 860 VANLADSFNEQSQQLNHPMEDLLPQLLAQQETMAQLMASQKELQRQLSNQLTGPLEVALGRMIEKSLKSNADALWARLQE 939 (1283)
T ss_pred hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33334333333444444445555566666778888888888888877543322 2234445555666665554444333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029028 168 RRKSYADNANALKAQLD 184 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld 184 (200)
....-|.....+++|+-
T Consensus 940 ~la~~e~~~r~~~~qi~ 956 (1283)
T KOG1916|consen 940 ELAKNEKALRDLQQQIT 956 (1283)
T ss_pred HHHhhhhhhhHHHHHHH
Confidence 33333444444444433
No 216
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=62.72 E-value=1.6e+02 Score=28.98 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 165 ALKRRKSYADNANALKAQLDQQKN 188 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~ 188 (200)
+..++..+++.+..+.....+.+.
T Consensus 218 ~~~ri~~LEedi~~l~qk~~E~e~ 241 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKEKEQEK 241 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655555544333
No 217
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=62.69 E-value=74 Score=25.01 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.+|++--....+.+.++......+.......+.++.++..++...-+.|..
T Consensus 31 ~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ 81 (156)
T PRK05759 31 KALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKK 81 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555554444444
No 218
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=62.59 E-value=1.1e+02 Score=31.82 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhh
Q 029028 142 ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK--------AQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 142 ~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq--------~qld~~~~~ve~Lk~~l~ 198 (200)
..++.=++.+...+.|+-+=|+.+|.+..++.+....-+ .+-.+.++..++|-+.++
T Consensus 569 dLq~Mmd~ieela~~G~~~~A~qlL~qlq~mmenlq~~q~~~g~~~~~~~~~~~q~m~~L~e~lr 633 (851)
T TIGR02302 569 DLQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQMGQPGQGQQMGDQSGDMEQQMNKLGELMR 633 (851)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCcCCCcccccchHHHHHHHHHHHHHHH
Confidence 366667788888899999999999999988888777544 122234666666666554
No 219
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=62.21 E-value=89 Score=25.76 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~ 177 (200)
..+.+..++.+|.+++..+..++.....++.+.............. ...-.|+--|+|-.+...+.-++.
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~----f~~ysE~dik~AYe~A~~lQ~~L~ 94 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN----FDRYSEEDIKEAYEEAHELQVRLA 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccCHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888888888888888888888887777666443322 233334444444444444333333
No 220
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=62.11 E-value=61 Score=23.81 Aligned_cols=62 Identities=11% Similarity=0.000 Sum_probs=53.4
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 91 n~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
..++.++++-..+|.+.....+..+.+++...++-...-+.++..++-....+..+..++..
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999888877653
No 221
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=62.04 E-value=1.3e+02 Score=27.71 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=56.0
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e 173 (200)
+..+.||..+|...|.-+-+.+.++............+|+.+.+.+..+++++-. +...-+.+|-...+.=..+=.
T Consensus 118 L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~----~K~~~E~~L~~KF~~vLNeKK 193 (342)
T PF06632_consen 118 LKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVN----AKEEHEEDLYAKFVLVLNEKK 193 (342)
T ss_dssp -EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHH
Confidence 5566789877777777777777777777777777777777777777776666543 222223455444444344444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 174 DNANALKAQLDQQKNVVN 191 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve 191 (200)
..+..++..++..+....
T Consensus 194 ~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 194 AKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 555566666665554433
No 222
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.01 E-value=1.1e+02 Score=26.84 Aligned_cols=52 Identities=10% Similarity=-0.034 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 137 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (200)
Q Consensus 137 ~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~ 188 (200)
.++..++++|+++.+.|-..=+.|+.|.=..+..++..-...+-...-...+
T Consensus 180 ~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~ 231 (243)
T cd07666 180 DLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYYE 231 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777744445777777777777777666665444444333
No 223
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=61.98 E-value=1.9e+02 Score=29.43 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQ 120 (200)
Q Consensus 104 LdQ~IReme~~l~kar~ 120 (200)
|++.+..+.+++.++..
T Consensus 82 L~~~~~~v~~~~~~~e~ 98 (766)
T PF10191_consen 82 LQEQMASVQEEIKAVEQ 98 (766)
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 33344444444443333
No 224
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=61.98 E-value=1e+02 Score=26.38 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.++|+..+.|++..+......-...+++.+++|++...+...++.++..=..
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3677777888888888888888888899999999988888888888776544
No 225
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.92 E-value=64 Score=29.89 Aligned_cols=65 Identities=9% Similarity=0.125 Sum_probs=49.1
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 86 VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 86 vra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
+...+...+|+++--++.|++.+..+-+++..++..++.+....++...-+.+...+..+....-
T Consensus 246 l~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeL 310 (359)
T PF10498_consen 246 LQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEEL 310 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45667777888888889999888888888888888888887777777776666666555554443
No 226
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=61.51 E-value=92 Score=25.70 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=47.0
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL 166 (200)
.+-+++-...+++.+..+.+.+......++.+-...-++..+++-+.+.+..+...++.+-.--.|+=|.+++
T Consensus 81 r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~eda~DEEaeE~~ 153 (158)
T PF09486_consen 81 RDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAEDAQDEEAEEAA 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhcchHHHHHH
Confidence 3444455566666666666666666666666666666777777777777777777777665555555454443
No 227
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=61.37 E-value=62 Score=30.67 Aligned_cols=25 Identities=4% Similarity=-0.019 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 128 SQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 128 ~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
....+..+++.++.+++.|+.|...
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~ 431 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDA 431 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666655554
No 228
>PLN02829 Probable galacturonosyltransferase
Probab=61.36 E-value=25 Score=35.00 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
.+-|-.+|.|+++|..||.=+ .+|..+--+.=..++...|.+.+.-.-.|-. |.||=..+..+.+..+.-+...+.
T Consensus 179 ~~~d~~v~~lkDql~~AkaY~--~iak~~~~~~l~~el~~~i~e~~r~l~~a~~--d~~lp~~~~~~~~~m~~~i~~ak~ 254 (639)
T PLN02829 179 VMPDARVRQLRDQLIKAKVYL--SLPATKANPHFTRELRLRIKEVQRVLGDASK--DSDLPKNANEKLKAMEQTLAKGKQ 254 (639)
T ss_pred cCchHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhhccC--CCCCChhHHHHHHHHHHHHHHHHh
Confidence 677889999999999999764 5666555566666777777776554444433 778888888888888888877777
Q ss_pred HHHHHHHHHHHHHhhh
Q 029028 182 QLDQQKNVVNNLVSNT 197 (200)
Q Consensus 182 qld~~~~~ve~Lk~~l 197 (200)
........+.+|+..|
T Consensus 255 ~~~d~~~~~~KLr~~l 270 (639)
T PLN02829 255 MQDDCSIVVKKLRAML 270 (639)
T ss_pred cccCHHHHHHHHHHHH
Confidence 7666666666666554
No 229
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=61.33 E-value=1.4e+02 Score=27.87 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHHHhhccC--CHH-HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVK---------------------MRQATAQVLASQKRL 132 (200)
Q Consensus 77 sif~Rl~~lvra~in~~ldk~E--DP~-~mLdQ~IReme~~l~k---------------------ar~~lA~v~A~~k~l 132 (200)
++..++.. ++..+..+....- +|. .-++..|.+++..+.+ ....+....++...+
T Consensus 251 ~l~~~l~~-l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 329 (498)
T TIGR03007 251 ELDGRIEA-LEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASL 329 (498)
T ss_pred chHHHHHH-HHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHH
Confidence 34444443 2333444433333 464 5666777777776544 333455555555566
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029028 133 ENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 133 e~k~~~~~~~i~~we~rA~ 151 (200)
+.+++.+..++++++.+..
T Consensus 330 ~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 330 EARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655554
No 230
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=61.31 E-value=90 Score=32.13 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLE-------NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le-------~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~ 174 (200)
.-|+..+.|+++.+.+.-+++|+.+....... ....--....++.=++.+...+.|+-|=|+..|.+..++.+
T Consensus 492 eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mme 571 (820)
T PF13779_consen 492 EEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMME 571 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33444444444445554555554444433321 11122355667777788888899999999999998877776
Q ss_pred HHHHHHHH---HHHHHHHHHHHHhhhh
Q 029028 175 NANALKAQ---LDQQKNVVNNLVSNTR 198 (200)
Q Consensus 175 ~a~~lq~q---ld~~~~~ve~Lk~~l~ 198 (200)
....-+.+ -.+..+..++|.+.++
T Consensus 572 nmq~~~~q~~~~~~~~q~m~~L~dl~r 598 (820)
T PF13779_consen 572 NMQNAQPQQQQQQEMQQAMEELGDLLR 598 (820)
T ss_pred hccccCCCchhhHHHHHHHHHHHHHHH
Confidence 55433322 2334445555554443
No 231
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=61.27 E-value=90 Score=25.52 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAI---LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKR 131 (200)
Q Consensus 79 f~Rl~~lvra~in~~---ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~ 131 (200)
|+-+..++...-+.+ +|.+|.-..-+++...+.+..+.+++..-...+...+.
T Consensus 26 wkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~ 81 (154)
T PRK06568 26 KKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNE 81 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554443333 33444444666777777777777777766665555443
No 232
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.72 E-value=1.1e+02 Score=26.56 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 128 ~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
+...+++++-.++..-++-+...+.|.++||-+-++..+.+..+.......+-.
T Consensus 26 e~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~ 79 (227)
T KOG3229|consen 26 EGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYE 79 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777778888888999987776666666555554444433
No 233
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=60.67 E-value=1.3e+02 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~ 138 (200)
++..+.+++.++.++...+..+.+.....+.+++.
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r 131 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSR 131 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444444444444443
No 234
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.29 E-value=1.7e+02 Score=28.39 Aligned_cols=111 Identities=25% Similarity=0.339 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 029028 85 VVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE-----------DWYRKAQLA 153 (200)
Q Consensus 85 lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~-----------~we~rA~~A 153 (200)
.-+-.++.+...+|-= .-.+|.+.|+++.|.+++..--.|-.++.-||+++.++-..-+ +--.+.+.|
T Consensus 239 ~akehv~km~kdle~L-q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 239 KAKEHVNKMMKDLEGL-QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 3344555555554432 4568999999999999999988888888888888873221111 011234445
Q ss_pred HhcCCHHH-------HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 154 LQKGEEDL-------AREALKRR---------KSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 154 L~~G~EDL-------Ar~AL~rk---------~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
|.+.+-+| |=.||+.. +-|+.+.+.-+.|+....+.+++|++.
T Consensus 318 L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKK 376 (575)
T KOG4403|consen 318 LEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKK 376 (575)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 54443332 12344443 345555566677888888888888764
No 235
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=59.50 E-value=1.2e+02 Score=26.30 Aligned_cols=7 Identities=71% Similarity=0.980 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 029028 101 EKILEQA 107 (200)
Q Consensus 101 ~~mLdQ~ 107 (200)
+.+|.++
T Consensus 43 ~~~l~~A 49 (255)
T TIGR03825 43 EQILEKA 49 (255)
T ss_pred HHHHHHH
Confidence 3333333
No 236
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.50 E-value=1.1e+02 Score=26.17 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.-++..-.++.+++..+...+.......+++++.++..+.++++++.+....
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666666666666666677777777777777776666554
No 237
>PRK10869 recombination and repair protein; Provisional
Probab=59.44 E-value=1.4e+02 Score=28.97 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 125 VLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
=+..-..++++|..--.++-.|.++++.-|
T Consensus 304 Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL 333 (553)
T PRK10869 304 RLSKQISLARKHHVSPEELPQHHQQLLEEQ 333 (553)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 344455566666644455555555544443
No 238
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=59.35 E-value=97 Score=25.31 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (200)
Q Consensus 111 me~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~v 190 (200)
.+....++...+..++......+.++..+...-.+|..+...=+..|= ...+...|+.-+..|+..++.+...+
T Consensus 14 ~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~------s~~q~~nyq~fI~~Le~~I~q~~~~~ 87 (148)
T COG2882 14 AKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGV------SAAQWQNYQQFISQLEVAIDQQQSQL 87 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888888888888888888888888888777666662 34455666777777777776666666
Q ss_pred HHHHhhh
Q 029028 191 NNLVSNT 197 (200)
Q Consensus 191 e~Lk~~l 197 (200)
..+...+
T Consensus 88 ~~~~~~v 94 (148)
T COG2882 88 SKLRKQV 94 (148)
T ss_pred HHHHHHH
Confidence 6554433
No 239
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=59.22 E-value=1.1e+02 Score=25.81 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 131 RLENKCKAAEQASEDWYRKAQLALQ-KGEE-------DLAREALKRRKSYADNANALKAQLDQQKNV 189 (200)
Q Consensus 131 ~le~k~~~~~~~i~~we~rA~~AL~-~G~E-------DLAr~AL~rk~~~e~~a~~lq~qld~~~~~ 189 (200)
.+++++..+...+.....-....+. .... ..-+....+...+.+.++.+...++.....
T Consensus 155 ~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 221 (292)
T PF01544_consen 155 DLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDL 221 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444434443 2221 123444444444444444444444443333
No 240
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=59.20 E-value=45 Score=28.77 Aligned_cols=32 Identities=6% Similarity=0.133 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
.....+|.++.+.+.++++++.+...|.+.+.
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666677777777777777766666554
No 241
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=59.12 E-value=69 Score=23.51 Aligned_cols=30 Identities=7% Similarity=0.138 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
.++..++.....++..+.++.....+.+..
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777777776666555443
No 242
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.09 E-value=2.6e+02 Score=30.09 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhcCC
Q 029028 142 ASEDWYRKAQLALQKGE 158 (200)
Q Consensus 142 ~i~~we~rA~~AL~~G~ 158 (200)
.+..+...+..-+..|.
T Consensus 952 ~~~~~~~~i~~y~~~~~ 968 (1311)
T TIGR00606 952 NIHGYMKDIENKIQDGK 968 (1311)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 33444444444444443
No 243
>PRK08453 fliD flagellar capping protein; Validated
Probab=59.03 E-value=66 Score=32.41 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
=|||.||..++...+...-..+..-+.-|...+..+++++.+....+ .....+++.++..++..+.++..+
T Consensus 598 ~Gi~~rl~~~L~~~i~g~~G~l~~~~~sL~~q~k~L~~q~~~~e~rL---~~ry~rl~~qFsAmDs~IsqmNsq 668 (673)
T PRK08453 598 EGIFSKFNQVIANLIDGGNAKLKIYEDSLTRDAKSLTKDKENAQELL---KTRYDIMAERFAAYDSQISKANQK 668 (673)
T ss_pred CcHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777877777776543111233344456666666666666555444 234455555666666666655543
No 244
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=59.01 E-value=1.7e+02 Score=27.88 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=50.9
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 75 RMNLFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 75 ~Msif~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
|-+=|.=+.+-+++.|..+-..-+|=. .-++|.++-..+.-.++.++.+.-.+ ++..+-... .--.++.+
T Consensus 279 m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqarea---klqaec~rQ--~qlaLEEK-- 351 (442)
T PF06637_consen 279 MTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREA---KLQAECARQ--TQLALEEK-- 351 (442)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHH--
Confidence 344556666666666666654433322 44555555555554444443322111 111111111 11122333
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 152 LALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 152 ~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
.||.+.+|.|+++.-+++.+++....++.
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999988888777665544443
No 245
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=58.95 E-value=1.2e+02 Score=26.18 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~q 182 (200)
.-+-.+.++++++.-+...+-...+....+..+.+.+...+..+..+...| |--|..+-.+.+.++...+.++.-
T Consensus 106 ~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEa-----E~rAE~aERsVakLeke~DdlE~k 180 (205)
T KOG1003|consen 106 AAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEA-----ETRAEFAERRVAKLEKERDDLEEK 180 (205)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHcccHHHHHHh
Confidence 344556778888888888888888888888888888888888888876665 334555666666666666666666
Q ss_pred HHHHHHHHHHHHhhh
Q 029028 183 LDQQKNVVNNLVSNT 197 (200)
Q Consensus 183 ld~~~~~ve~Lk~~l 197 (200)
+.........++..|
T Consensus 181 l~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 181 LEEAKEKYEEAKKEL 195 (205)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666555554444443
No 246
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.88 E-value=1e+02 Score=25.34 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 172 YADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 172 ~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
..++++.++.+++..+..++.|+++
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 247
>PRK10807 paraquat-inducible protein B; Provisional
Probab=58.31 E-value=1.3e+02 Score=29.41 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=27.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 74 TRMNLFDRLARVVKSYANAILSSFED-PEKILEQAVLEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 74 ~~Msif~Rl~~lvra~in~~ldk~ED-P~~mLdQ~IReme~~l~kar~~lA~v~ 126 (200)
+..|-|.+|. ..+++++++++. | |++.+.+++..+..+++.+.++-
T Consensus 410 t~ps~l~~l~----~~~~~il~kin~lp---le~i~~~l~~tL~~~~~tl~~l~ 456 (547)
T PRK10807 410 TVSGGLAQIQ----QKLMEALDKINNLP---LNPMIEQATSTLSESQRTMRELQ 456 (547)
T ss_pred cCCCCHHHHH----HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777764 577777877764 3 55555555555655555554333
No 248
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=58.25 E-value=1.5e+02 Score=30.44 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=29.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (200)
Q Consensus 90 in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (200)
++.+|+..+.-+.-|+-.|+++++.+...+.......+.+..+..++......
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~ 281 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSH 281 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhh
Confidence 34444444444566666667777777777665555555555554444444333
No 249
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=58.15 E-value=66 Score=30.16 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 159 EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
..........+..+..++..++.++..++..+.+.
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555666666667777777777666666655
No 250
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=58.12 E-value=1e+02 Score=25.05 Aligned_cols=50 Identities=22% Similarity=0.190 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
.+|+.--..+.+.+.++......+.......+.++...+.++...-..|+
T Consensus 46 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~ 95 (174)
T PRK07352 46 KILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444433333
No 251
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=58.03 E-value=1e+02 Score=25.19 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
.+|++--..+.+++.++.....++.......+.++.+.+.++.+.-+.
T Consensus 54 ~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 54 GMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444333
No 252
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.99 E-value=1.2e+02 Score=26.00 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA---REALKRRKSYADNANALK 180 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLA---r~AL~rk~~~e~~a~~lq 180 (200)
++-.+-|+-..+.+.+..+.....+...+...+.++...+..|+++-..--....+-|. .+...-+..+..++..++
T Consensus 88 ~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLq 167 (207)
T PF05010_consen 88 LEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQ 167 (207)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 029028 181 AQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 181 ~qld~~~~~ve~Lk~~l~~ 199 (200)
+.+...+-.+..|...|..
T Consensus 168 a~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 168 ASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 253
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=57.88 E-value=95 Score=24.71 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQV 125 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v 125 (200)
.-.++...+.+..+.+++......
T Consensus 50 ~eA~~~~~~~e~~L~~A~~ea~~i 73 (159)
T PRK09173 50 EEAQQLLAEYQRKRKEAEKEAADI 73 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 254
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=57.59 E-value=97 Score=24.75 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
.+++.+.+....+..-...-+.++........+..+...++.--|..++
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~ 93 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDD 93 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccc
Confidence 4444444444555555555555555555555555555555555554443
No 255
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.54 E-value=1.2e+02 Score=25.83 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 85 VVKSYANAILSSFED----PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 85 lvra~in~~ldk~ED----P~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
.++..+++.++...| +...+...+..++..+...+..+......-.....++.+....++.......
T Consensus 38 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 38 ELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555553221 2244444555555555555555555555555555555555555555544443
No 256
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=57.38 E-value=1.8e+02 Score=27.64 Aligned_cols=7 Identities=14% Similarity=0.041 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 029028 79 FDRLARV 85 (200)
Q Consensus 79 f~Rl~~l 85 (200)
..+|.++
T Consensus 322 ~~~Lr~~ 328 (462)
T PRK08032 322 QTQLKSQ 328 (462)
T ss_pred HHHHHHH
Confidence 3333333
No 257
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=56.90 E-value=80 Score=23.54 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY---------RKAQLALQKGE-EDLAREALKRRKSYADNANALKAQ 182 (200)
Q Consensus 113 ~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we---------~rA~~AL~~G~-EDLAr~AL~rk~~~e~~a~~lq~q 182 (200)
..+.+.+..+.........++.++.+...-.+.+. ...-.++-.-+ ++.-...-.++..++..+..+..+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~ 85 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQ 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666655555544443 22222333333 444444455667788999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 029028 183 LDQQKNVVNNLVSNTR 198 (200)
Q Consensus 183 ld~~~~~ve~Lk~~l~ 198 (200)
++.......+++..|+
T Consensus 86 ~~~l~~~~~elk~~l~ 101 (105)
T cd00632 86 EEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998876
No 258
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=56.49 E-value=76 Score=23.16 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 134 NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (200)
Q Consensus 134 ~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~ 188 (200)
..+..+...+++.++....-|..-.++.=...-..+..++..+..+...++..+.
T Consensus 46 ~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 46 AAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444555555555444444433
No 259
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=56.21 E-value=61 Score=31.16 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHHHHHH--hhccC--CHHHH---HHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 029028 76 MNLFDRLARVVKSYANAI--LSSFE--DPEKI---LEQAVLEMN-DDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDW 146 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~--ldk~E--DP~~m---LdQ~IReme-~~l~kar~~lA~v~-A~~k~le~k~~~~~~~i~~w 146 (200)
-+.++||...+-+..+.- |+.++ ||..| .-....+.- +...-..+++.... .+.....++++++++++++-
T Consensus 60 e~AL~rLl~~~p~~~~~~~~Ls~l~~~dm~~m~mMat~L~l~~~ad~a~s~~kq~ei~td~Q~~LR~k~~~e~q~qi~ka 139 (473)
T PRK15362 60 SNALKRILDAVPGNHKRPLSLSDFEQTPMDVMSMMATLLILSVFGDNAQSLCQALEIATEVQEALRDKQVKEYQEQIQKA 139 (473)
T ss_pred HHHHHHHHhhccCCCCCCcchHhhcCCChHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888887655554 77777 77632 223333322 22222222222221 22344567788999999999
Q ss_pred HHHHHHHHhcCC
Q 029028 147 YRKAQLALQKGE 158 (200)
Q Consensus 147 e~rA~~AL~~G~ 158 (200)
.+++..|-+.|=
T Consensus 140 ~e~adkA~KagI 151 (473)
T PRK15362 140 IEQEDKARKAGI 151 (473)
T ss_pred HHHHHHHHhccH
Confidence 998888888774
No 260
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=55.72 E-value=2e+02 Score=27.89 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDL 115 (200)
Q Consensus 102 ~mLdQ~IReme~~l 115 (200)
.|+|..=|+.+++.
T Consensus 199 ~m~D~KEreaeea~ 212 (489)
T PF05262_consen 199 DMVDIKEREAEEAA 212 (489)
T ss_pred hhHHHHHHHhHHHH
Confidence 45554444444444
No 261
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.57 E-value=2.5e+02 Score=29.93 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.+-++++..+..-+..+....+.++.
T Consensus 338 ~e~~~EL~~I~Pky~~l~~ee~~~~~ 363 (1200)
T KOG0964|consen 338 EEKKDELSKIEPKYNSLVDEEKRLKK 363 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHH
Confidence 33444444444444444444444443
No 262
>PLN02742 Probable galacturonosyltransferase
Probab=55.20 E-value=69 Score=31.41 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
++.|++++.-||.=+ .+|..+--..=..++...|.+.+.
T Consensus 76 ~~~l~dql~~Ak~y~--~ia~~~~~~~l~~el~~~i~e~~~ 114 (534)
T PLN02742 76 SRQLADQITLAKAYV--VIAKEHNNLQLAWELSAQIRNCQL 114 (534)
T ss_pred HHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHH
Confidence 345555555555433 333333333333344444444433
No 263
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.19 E-value=89 Score=23.59 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 162 Ar~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
|......+......+..+..++..+...+.++...|.
T Consensus 69 a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 69 AEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777888888888888888877776654
No 264
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=55.17 E-value=1.7e+02 Score=26.82 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQ 120 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~ 120 (200)
.-|.+.+.+.+.++.+.+.
T Consensus 257 ~~l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555566666665554
No 265
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=55.00 E-value=3.6e+02 Score=30.54 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=49.4
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 75 RMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 75 ~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
.|+++.==..+++........++ .-|.-.|+.++.++.-.+..+....+.-.....+++-++....+|..|...-+
T Consensus 1223 ~vNll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1223 EVNLLRESNKVLREENEANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666655555443 33444444555555555555666666666666777778888889999988877
Q ss_pred hc
Q 029028 155 QK 156 (200)
Q Consensus 155 ~~ 156 (200)
.+
T Consensus 1299 ~k 1300 (1822)
T KOG4674|consen 1299 EK 1300 (1822)
T ss_pred HH
Confidence 77
No 266
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=54.81 E-value=2.3e+02 Score=28.27 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 135 KCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (200)
Q Consensus 135 k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~ 187 (200)
++++=-..+-.+.+.|..-|+.|+.+.|++-+.++..+-+....+..++..+-
T Consensus 394 ElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FA 446 (603)
T COG4191 394 ELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFA 446 (603)
T ss_pred HhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455667888999999999999999999999999999999999887753
No 267
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=54.73 E-value=1e+02 Score=24.06 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
+.=.+.....+...++.+.......+.++..+..-...|..+.......|
T Consensus 11 l~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g 60 (147)
T PRK05689 11 LDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAG 60 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33445566778888888888888888888888888888888776655555
No 268
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=54.56 E-value=1.6e+02 Score=26.36 Aligned_cols=89 Identities=13% Similarity=0.211 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 029028 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (200)
Q Consensus 98 EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~ 177 (200)
+.-+.++++..+++++ +.|.+.+. -.-++++.++..++..+.+.+.+.-. ..++++...++..+.+...
T Consensus 151 ~ekd~~i~~~~~~~e~---d~rnq~l~--~~i~~l~~~l~~~~~~~~~~~~~~~~------~~~~~e~~~r~~~lr~~~~ 219 (264)
T PF07246_consen 151 EEKDQLIKEKTQEREN---DRRNQILS--HEISNLTNELSNLRNDIDKFQEREDE------KILHEELEARESGLRNESK 219 (264)
T ss_pred HHHHHHHHHHhhchhh---hhHHHHHH--HHHHHhhhhHHHhhchhhhhhhhhhH------HHHHHHHHHhHhhhHHHHH
Confidence 4445555555555544 23333332 22334444554444443333333221 4567777777777777888
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 029028 178 ALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 178 ~lq~qld~~~~~ve~Lk~~l 197 (200)
.++..+.+.+.....++..+
T Consensus 220 ~l~~el~~aK~~~~~~~~~~ 239 (264)
T PF07246_consen 220 WLEHELSDAKEDMIRLRNDI 239 (264)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 88888888777777776654
No 269
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=54.23 E-value=1.5e+02 Score=30.52 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHH-------H
Q 029028 102 KILEQAVLEMNDDLVKM-----RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG------EEDLA-------R 163 (200)
Q Consensus 102 ~mLdQ~IReme~~l~ka-----r~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G------~EDLA-------r 163 (200)
+||+|.+||-+..-... -=+|......-..|+.++.+..+..+.++.+-+.-++-- +-.+. .
T Consensus 404 rilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~ 483 (861)
T PF15254_consen 404 RILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQ 483 (861)
T ss_pred HHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666544333111 225566666666677777776666666665444333221 11122 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 164 ~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
+.++-++.++.+...++-.+++.-..+..++-.|
T Consensus 484 ~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kL 517 (861)
T PF15254_consen 484 ELLENKQQFDIETTRIKIEVEEALVNVKSLQFKL 517 (861)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3455566677777777777777666666655443
No 270
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.13 E-value=1.5e+02 Score=29.93 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-EDLAREALKRR 169 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~-EDLAr~AL~rk 169 (200)
|.-.|..++..-.++|..+.........+..++..++.+.+.++.+......+=. |-.....|+++
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555555777777788888888888887766544433 33333444444
No 271
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.06 E-value=1.9e+02 Score=27.03 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 171 SYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 171 ~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
....++...+.+++..+..++..+..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544443
No 272
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=53.80 E-value=44 Score=33.48 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
.+-|-.++.|+++|.-||.= -.+|..+--..=..++...|.+.+.-.-.| ..|.||=..++.+.+.++..+...+.
T Consensus 193 ~~~d~~vk~lkDQl~~AkaY--~~iak~~~~~~l~~eL~~~i~e~~r~ls~a--~~d~dlp~~~~~k~~~M~~~l~~ak~ 268 (657)
T PLN02910 193 PNSDSILKLMRDQIIMAKAY--ANIAKSNNVTNLYVSLMKQFRENKRAIGEA--TSDAELHSSALDQAKAMGHVLSIAKD 268 (657)
T ss_pred cCcHHHHHHHHHHHHHHHHH--HHHhccCCcHHHHHHHHHHHHHHHHHHhhc--ccccccCchHHHHHHHHHHHHHHHHh
Confidence 56788899999999998875 334444444444555555665555444443 36888888899999988888888888
Q ss_pred HHHHHHHHHHHHHhhh
Q 029028 182 QLDQQKNVVNNLVSNT 197 (200)
Q Consensus 182 qld~~~~~ve~Lk~~l 197 (200)
........+.+|+..|
T Consensus 269 ~~~d~~~~~~KLraml 284 (657)
T PLN02910 269 QLYDCHTMARKLRAML 284 (657)
T ss_pred cccCHHHHHHHHHHHH
Confidence 7777777777776655
No 273
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=53.67 E-value=1.4e+02 Score=25.45 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 029028 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (200)
Q Consensus 97 ~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a 176 (200)
.++|...|+..|.-.++...++...|+.+....++.-.++.+-...-+.+ ..+|||--. -.-.++..+..++
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~-------~aqgDD~t~-lLEkEReRLkq~l 150 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAED-------MAQGDDFTN-LLEKERERLKQQL 150 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHccchHHH-HHHHHHHHHHHHH
Confidence 66899999999999999999999999998888888766655533322222 244554222 2334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 029028 177 NALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 177 ~~lq~qld~~~~~ve~Lk~~l 197 (200)
+.-+.+.+..+....++...+
T Consensus 151 E~Ek~~~~~~EkE~~K~~~~l 171 (192)
T PF09727_consen 151 EQEKAQQKKLEKEHKKLVSQL 171 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444433
No 274
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.53 E-value=65 Score=22.08 Aligned_cols=43 Identities=7% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
.+++.++.+.+..++....+...++.+++.+...-+-.++.|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4555566666666666666666666666666444444444444
No 275
>PRK12472 hypothetical protein; Provisional
Probab=53.51 E-value=2.3e+02 Score=27.73 Aligned_cols=72 Identities=26% Similarity=0.260 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG--EEDLAREALKRRKSYADNANALKAQLDQQKNVVNN 192 (200)
Q Consensus 116 ~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G--~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~ 192 (200)
.+..+.++.+.+..+.+|+..+....+... |..+|.+- ++.-+ .|.++++..+..+.+...|++..+...+.
T Consensus 214 ~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~----adk~l~~a~~d~~~~-~a~~~~~~~~~~~~~a~~~~~~a~~~~~~ 287 (508)
T PRK12472 214 AAAAREAAPLKASLRKLERAKARADAELKR----ADKALAAAKTDEAKA-RAEERQQKAAQQAAEAATQLDTAKADAEA 287 (508)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333344444444445555544444444332 33333332 33333 34457777788888877777776665543
No 276
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=53.46 E-value=1.8e+02 Score=29.36 Aligned_cols=40 Identities=10% Similarity=0.127 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
|+|+..-+..+..++.+..+.++.+.-++.++...+++++
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk 120 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELK 120 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5666666666666665555555555555555555554443
No 277
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=53.42 E-value=1.4e+02 Score=25.48 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQ 124 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~ 124 (200)
+..|.-.+.+++..|.++.+....
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999998876
No 278
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=53.34 E-value=1.5e+02 Score=25.54 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=33.0
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 99 DP~-~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
.|. .+|++--..+.+.+..+.....++.......+.++.+++.++...-..|+..-+
T Consensus 28 kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~ 85 (246)
T TIGR03321 28 RPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQ 85 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 353 555555555666666666666666666666666666666666655555554333
No 279
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=53.22 E-value=1.2e+02 Score=24.61 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLAS 128 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP---~~mLdQ~IReme~~l~kar~~lA~v~A~ 128 (200)
|+.+..++..+=..+.+.+++. ..-.+....+.+..+.+++......+..
T Consensus 40 ~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 92 (173)
T PRK13453 40 WGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILED 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554444443333333 3444555556666666666555554443
No 280
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=53.14 E-value=1.6e+02 Score=25.82 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 116 ~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
......+....+.....+.++..++.+.+.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~ 125 (327)
T TIGR02971 93 AKLFKDVAAQQATLNRLEAELETAQREVDRYRS 125 (327)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 281
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.99 E-value=1.7e+02 Score=26.25 Aligned_cols=49 Identities=22% Similarity=0.159 Sum_probs=21.3
Q ss_pred CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 99 DP~---~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
||+ .+.+-.+..+++-+...+... ......-++.++.+++.+..+.+.+
T Consensus 141 dP~~A~~ian~l~~~~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~ 192 (362)
T TIGR01010 141 DAEEAQKINQRLLKEGERLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAE 192 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 786 556655554444444322211 2222334444444444444444433
No 282
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=52.61 E-value=1.1e+02 Score=23.85 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 176 ANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 176 a~~lq~qld~~~~~ve~L 193 (200)
...++..++.+...+++|
T Consensus 74 l~~v~~~v~~L~~s~~RL 91 (132)
T PF10392_consen 74 LQAVRSSVESLQSSYERL 91 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 283
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=52.39 E-value=1.7e+02 Score=26.06 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=21.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 155 QKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (200)
Q Consensus 155 ~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve 191 (200)
..+..++.+....+..+.-+.++.+.+-+..+.....
T Consensus 215 ~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~ 251 (322)
T COG0598 215 SEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYL 251 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666666666666655444433
No 284
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=52.37 E-value=1.2e+02 Score=27.62 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 131 ~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
.+.++..+....+.+|.+|=+...+. ++-+...++.+-++|+.|+..++++|.-||+-|.
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~--------l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEA--------LLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555554444332 6677778888888888888888888888887664
No 285
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.17 E-value=1.4e+02 Score=24.78 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 76 MNLFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~ldk~E--DP~-~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
.|+|+.+...+... .-++. ||. .-..+++..++.+|..+.+.+..+....+.+-..+.++-.....|-
T Consensus 2 ~~~~~~~~~s~~~~----~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la 72 (236)
T PF09325_consen 2 KGLFGKLFDSVSNS----SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLA 72 (236)
T ss_pred hhHHHHHHHHHHcc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777777666665 33444 554 7778899999999999999999888888888888887777666553
No 286
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.13 E-value=1.1e+02 Score=23.80 Aligned_cols=70 Identities=10% Similarity=0.157 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 126 LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 126 ~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
+...-..-..+..++.+.......+... ....+..-...-......+.+-..|+..++..+..++.|...
T Consensus 51 l~~Ha~~~~~L~~lr~e~~~~~~~~~~l-~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 51 LVKHAEDIKELQQLREELQELQQEINEL-KAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445555555554444332 333333333344455667777777777777777777777653
No 287
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=52.11 E-value=1.4e+02 Score=24.94 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 129 QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 129 ~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
...++.++..++.+...++.+...--.. .|.+-+..... ........+..++.++.....|+..|+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~-~e~~ek~~~e~---~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNK-CEQLEKREEEL---RQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777777777666544322 33333322222 233445667777778888888877765
No 288
>PRK04654 sec-independent translocase; Provisional
Probab=51.92 E-value=1.3e+02 Score=26.05 Aligned_cols=17 Identities=12% Similarity=-0.034 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029028 78 LFDRLARVVKSYANAIL 94 (200)
Q Consensus 78 if~Rl~~lvra~in~~l 94 (200)
+++++++.+..-.+++.
T Consensus 35 ~irk~R~~~~~vk~El~ 51 (214)
T PRK04654 35 WVRRARMQWDSVKQELE 51 (214)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444434333
No 289
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.90 E-value=1.2e+02 Score=23.96 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
..-+...+..+++.+....+.++.+......++.++..+........+....... ..-..+.+|+.++..-.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~--------~~~~~~tq~~~e~rkke 139 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN--------QLQQRKTQYEHELRKKE 139 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666666666666666666655555544443333322 24455555666665555
Q ss_pred HHHHHHHHH
Q 029028 181 AQLDQQKNV 189 (200)
Q Consensus 181 ~qld~~~~~ 189 (200)
.+++.++..
T Consensus 140 ~E~~kLk~r 148 (151)
T PF11559_consen 140 REIEKLKER 148 (151)
T ss_pred HHHHHHHHH
Confidence 555555544
No 290
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.78 E-value=1.3e+02 Score=24.40 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=30.8
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKR-----LENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~-----le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
++.+++-..-.+....+.+..+.+++......+...+. .+..+++++.+++....+|+..+...+
T Consensus 59 l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~ 128 (174)
T PRK07352 59 LKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQ 128 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455555556666666666555544443322 223344444555555555544444433
No 291
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=51.53 E-value=97 Score=22.90 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 139 ~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
+...+++|..-|+.|+..||--+|.--++-...|.--+...+.
T Consensus 35 A~ql~EKY~~LArDA~ssGDrV~aEny~QHAeHY~Ril~~~~~ 77 (80)
T PF13763_consen 35 AQQLIEKYNQLARDAQSSGDRVLAENYLQHAEHYFRILAAAQA 77 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999998888887777766665544
No 292
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.26 E-value=1.8e+02 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVL 126 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~ 126 (200)
+-..-+++.+.++++.+.+++..+..-.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr 197 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQ 197 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677777777777777766655433
No 293
>PRK06798 fliD flagellar capping protein; Validated
Probab=51.25 E-value=1.3e+02 Score=28.60 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 126 LASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 126 ~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
-.....++.+++.++.++++|+.|..
T Consensus 378 ~~r~~~l~~~i~~l~~~~~~~e~rl~ 403 (440)
T PRK06798 378 GERSKSIDNRVSKLDLKITDIDTQNK 403 (440)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666654
No 294
>PF15294 Leu_zip: Leucine zipper
Probab=51.24 E-value=1.9e+02 Score=26.12 Aligned_cols=49 Identities=6% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 100 P~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
+..+|.-.|+.++++..+++..+.......-..-.+-..++.++.+++.
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888887776555554444444444444444444444
No 295
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=51.19 E-value=2.4e+02 Score=27.38 Aligned_cols=31 Identities=6% Similarity=0.176 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 163 REALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 163 r~AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
.....+...+.++++.++.+.......+..|
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 296
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.96 E-value=1.7e+02 Score=25.65 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=14.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHh
Q 029028 74 TRMNLFDRLARVVKSYANAIL 94 (200)
Q Consensus 74 ~~Msif~Rl~~lvra~in~~l 94 (200)
..+|-|...++.++..+..+.
T Consensus 60 ~~~Gt~~~~~~~~~~e~e~~a 80 (269)
T cd07673 60 SQLGTFAPVWDVFKTSTEKLA 80 (269)
T ss_pred CCcChHHHHHHHHHHHHHHHH
Confidence 466778888888877665444
No 297
>PF14282 FlxA: FlxA-like protein
Probab=50.88 E-value=1.1e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 167 KRRKSYADNANALKAQLDQQKNVV 190 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~v 190 (200)
.+...+..++..|++||..+..+.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544433
No 298
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=50.58 E-value=1.9e+02 Score=28.31 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDL---VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l---~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
-.+.+.+-+.+-++-++|.++--++.+.+.-.|+.-++ .++|..+.++++.++++...|....++..++..+-+.||
T Consensus 500 S~eTll~niq~llkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L 579 (641)
T KOG3915|consen 500 SIETLLTNIQGLLKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEAL 579 (641)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666677766666666666655555443 455667777777777666666665555555555555555
Q ss_pred hcC
Q 029028 155 QKG 157 (200)
Q Consensus 155 ~~G 157 (200)
.-+
T Consensus 580 ~~~ 582 (641)
T KOG3915|consen 580 EFE 582 (641)
T ss_pred hhc
Confidence 543
No 299
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.41 E-value=1.7e+02 Score=25.43 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
....++.....++..+..+|..++.-... +-.++....+.+..+..++..+..+|+.++..
T Consensus 43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkq------------a~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 43 ELLQERMAHVEELRQINQDINTLENIIKQ------------AESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666665444433 33444445555555556666666666666554
No 300
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=50.12 E-value=1.8e+02 Score=25.48 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~-~k~le~k~~~~~~~i~~we~rA 150 (200)
.+......++.+.+.+++......++. +.++++...+.+.+.+.....|
T Consensus 70 ~~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a 119 (281)
T PRK06669 70 EIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEA 119 (281)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333332 2233333444444444444333
No 301
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=50.05 E-value=1.1e+02 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 134 NKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 134 ~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
+++++..+++++|.++++.|-+.|
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~G 56 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKAG 56 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888899999999999998886664
No 302
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.98 E-value=2.9e+02 Score=28.84 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQ-KGE-------EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~-~G~-------EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.....+..+..+++.....++.|...++.|-. +|- +.=+-+-+....+...+...++.++.++++++..+..
T Consensus 748 ~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~ 827 (970)
T KOG0946|consen 748 KLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLE 827 (970)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666677778888888886532 222 2222233333333333455556666666666555543
No 303
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=49.92 E-value=2e+02 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 171 SYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 171 ~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
-++.++..-+.+++.++..+..++.+|.
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666654
No 304
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.91 E-value=2.5e+02 Score=27.17 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG----EED---LAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G----~ED---LAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
-.+.+.+..+|..+|..++++..+-+-+|..+|... +|- ++|+|--.+..++-.+.++......+...+..|+
T Consensus 245 ~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666677777777777777766432 222 3344444444444444444444444444444443
Q ss_pred h
Q 029028 195 S 195 (200)
Q Consensus 195 ~ 195 (200)
.
T Consensus 325 s 325 (502)
T KOG0982|consen 325 S 325 (502)
T ss_pred H
Confidence 3
No 305
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=49.90 E-value=1.3e+02 Score=25.73 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (200)
Q Consensus 77 sif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~w 146 (200)
||..+|..++...++.--..+..-...|+..|..+++++.+....+. ..+.++..++..++..+.++
T Consensus 171 Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~---~~~~~l~~qf~~me~~i~~l 237 (239)
T PF07195_consen 171 GIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLE---SKEERLRKQFSAMESLISQL 237 (239)
T ss_pred cHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 45555555555444221111122234444444444444444443322 22334444455544444443
No 306
>PRK06798 fliD flagellar capping protein; Validated
Probab=49.68 E-value=2.3e+02 Score=26.79 Aligned_cols=9 Identities=11% Similarity=0.191 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 029028 78 LFDRLARVV 86 (200)
Q Consensus 78 if~Rl~~lv 86 (200)
|..+|..++
T Consensus 301 i~~~l~~~~ 309 (440)
T PRK06798 301 INRAMNNVF 309 (440)
T ss_pred HHHHHHHHh
Confidence 333333333
No 307
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.68 E-value=2.4e+02 Score=26.93 Aligned_cols=8 Identities=50% Similarity=0.488 Sum_probs=3.6
Q ss_pred hhccCCHH
Q 029028 94 LSSFEDPE 101 (200)
Q Consensus 94 ldk~EDP~ 101 (200)
+..-|||.
T Consensus 136 l~~~eda~ 143 (420)
T COG4942 136 LVSPEDAQ 143 (420)
T ss_pred hcChhhhh
Confidence 33444543
No 308
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.89 E-value=67 Score=27.68 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=35.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 152 LALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 152 ~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+...+.|.--|...+.|......++.+++|+++.++.++.|..+|
T Consensus 51 l~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQL 96 (211)
T COG3167 51 LEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQL 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555666667777788888888999999999999999887765
No 309
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=48.62 E-value=1.4e+02 Score=24.03 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.+|++--..+.+++.++...-.++.......+.++..++.++.+.-..|...
T Consensus 37 ~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~ 88 (167)
T PRK14475 37 GALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKAD 88 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555444444443
No 310
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.44 E-value=3.7e+02 Score=28.78 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
-++|+.++.-++= -+ +.++-.+-+...|.+|+..+.+....+..-..+-..++.++++++.+.++-....-.+|...
T Consensus 226 dle~l~R~~ia~e--Y~-~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~ 302 (1174)
T KOG0933|consen 226 DLERLSRICIAYE--YL-QAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDK 302 (1174)
T ss_pred HHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 4555555554431 00 13344456666777777777777777777777777777777777776665555555555444
Q ss_pred CHHHH
Q 029028 158 EEDLA 162 (200)
Q Consensus 158 ~EDLA 162 (200)
-..+.
T Consensus 303 ~~~~~ 307 (1174)
T KOG0933|consen 303 LDSLQ 307 (1174)
T ss_pred HHHHH
Confidence 33333
No 311
>PF13514 AAA_27: AAA domain
Probab=48.42 E-value=3.5e+02 Score=28.47 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 161 LAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
+-..+..+...+..+...++.+++..+..+..|...+
T Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 272 (1111)
T PF13514_consen 236 FPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEEL 272 (1111)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777776654
No 312
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=48.40 E-value=1.6e+02 Score=27.67 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
..+......+...+.++......|+..
T Consensus 378 ~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 378 KKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433
No 313
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=48.28 E-value=1.4e+02 Score=23.75 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.+|+.-=..+..++.++.....++.......+.++.+++.++...-..|+.
T Consensus 32 ~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~ 82 (159)
T PRK13461 32 AVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKS 82 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555544444444
No 314
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.24 E-value=1.7e+02 Score=24.90 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLV 116 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~ 116 (200)
.+.++.++-...++.+..++.+|-+-....+--+.+.+.
T Consensus 69 ~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K 107 (211)
T cd07598 69 CLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLK 107 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888999999999999998777766666666663
No 315
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.24 E-value=1e+02 Score=22.24 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCC-------HHHHHHHHHHHHHHHHHHHHHH
Q 029028 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL---ALQKGE-------EDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 111 me~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~---AL~~G~-------EDLAr~AL~rk~~~e~~a~~lq 180 (200)
+...+...+..+..+......++.++.++..-...+..--.. =..-|+ +++-...-.++..++..+..++
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666655544443321000 000011 4566666677788999999999
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 029028 181 AQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 181 ~qld~~~~~ve~Lk~~l~~ 199 (200)
.++......+.+++..|+.
T Consensus 83 ~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 83 KQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 316
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.16 E-value=2.8e+02 Score=27.34 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATA 123 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA 123 (200)
.|+....+|+..+.++...+.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333343444444444433333
No 317
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=48.16 E-value=2.3e+02 Score=28.10 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr 163 (200)
.++++.|+-++.+.+-++..+-...+.++.++.++-++-.-++. ++.|+..|.-+||.
T Consensus 600 ~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQg----akKAVhdaK~ElA~ 657 (790)
T PF07794_consen 600 GFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQG----AKKAVHDAKVELAA 657 (790)
T ss_pred hhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHH
Confidence 56777777777777777777766666666666665555444433 44577777777773
No 318
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=48.11 E-value=1.5e+02 Score=24.22 Aligned_cols=50 Identities=16% Similarity=0.023 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
++.=..+++..+..+......|++.++-+-|...+.+..=+..-...++.
T Consensus 111 L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y~~kl~~~i~~ 160 (166)
T PRK01356 111 LEKIKNKYELMYKNEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKLQE 160 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566667778888888899999999888888777666555555544
No 319
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=47.67 E-value=1.4e+02 Score=29.60 Aligned_cols=32 Identities=3% Similarity=-0.018 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 163 REALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 163 r~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
++.-.+...++.++...+.++..+++.+.+|.
T Consensus 381 ~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 381 HQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555555555554443
No 320
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=47.66 E-value=1.9e+02 Score=25.15 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHhhccC-CHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFE-DPE----KILEQAVLEMNDD---LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~E-DP~----~mLdQ~IReme~~---l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
.|.+|.+++ .++..+-.... |-. ..|+.|+|++... +.+=-+.+..-....+-|++.... .+++.+|+.+
T Consensus 81 ~l~~laev~-eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~-~kev~~aE~~ 158 (218)
T cd07662 81 FFLKVSELF-DKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAK-NKDVLQAETT 158 (218)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChHHHHHHH
Confidence 677777766 34433333332 222 5666666665432 111112333333333333333332 2455556555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 029028 150 AQLAL-------QKGEEDLAREALKRRKSYADNANAL-KAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 150 A~~AL-------~~G~EDLAr~AL~rk~~~e~~a~~l-q~qld~~~~~ve~Lk~~l 197 (200)
...|- ..++.+|.+.=..|...+...+..+ +.++...+.+++-|+..|
T Consensus 159 ~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~ 214 (218)
T cd07662 159 QQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCL 214 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 3455677777778877777666554 345555666666555544
No 321
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=47.55 E-value=2.4e+02 Score=26.36 Aligned_cols=98 Identities=14% Similarity=0.272 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQ-AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ-~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
+++|.+|..+.. ..+++-..+.||+.+-+. .++++..++.+.. .+-..+.++....++++.--...-
T Consensus 3 ~~~~~kl~~~~~-r~~el~~~L~~p~v~~d~~~~~~lske~a~l~-----------~iv~~~~~~~~~~~~l~~a~~~l~ 70 (363)
T COG0216 3 PSLLEKLESLLE-RYEELEALLSDPEVISDPDEYRKLSKEYAELE-----------PIVEKYREYKKAQEDLEDAKEMLA 70 (363)
T ss_pred chHHHHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888877665 556666667778644431 2333333333222 222223333333333322222222
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 155 ~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
...|.++--.|-.+...++..+..++.+|..
T Consensus 71 ~~~D~em~ema~~Ei~~~~~~~~~le~~L~~ 101 (363)
T COG0216 71 EEKDPEMREMAEEEIKELEAKIEELEEELKI 101 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677666666777777777776666654
No 322
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=47.15 E-value=69 Score=24.50 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=13.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHH
Q 029028 104 LEQAVLEMN-DDLVKMRQATAQ 124 (200)
Q Consensus 104 LdQ~IReme-~~l~kar~~lA~ 124 (200)
=|+||++.+ ++|.+++..+..
T Consensus 62 E~~Y~r~~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 62 EEQYFRKKEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 368888887 566666655444
No 323
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.58 E-value=3.3e+02 Score=27.63 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH---HH-----------HHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL---KR-----------RKSYA 173 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL---~r-----------k~~~e 173 (200)
-.+++.-+...+....++...-..++.+.+.+...++++.+|-+.|.++ .+.|.+.+- .. -.++.
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~-Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~ 638 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDK-QEKLMKRVDRVLQLLNSQLPVLSEAEREFK 638 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 3344444444455555555555556666666666667777776666555 334433221 11 14456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 174 DNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
++++.++.+++.+...+++++..++
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776653
No 324
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=46.51 E-value=1.1e+02 Score=22.05 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAI 93 (200)
Q Consensus 78 if~Rl~~lvra~in~~ 93 (200)
+|+.+.+.+.+.+...
T Consensus 7 ~~d~~~~~~~~~~~~~ 22 (79)
T PF04380_consen 7 IFDDLAKQISEALPAA 22 (79)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4566655555554433
No 325
>PLN02943 aminoacyl-tRNA ligase
Probab=45.97 E-value=91 Score=32.47 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
.-++..+|+++++.++.++++.+.+.- +..-+++.-.+.+..-.+.+..++.+++..++.+..|++++-
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLs-----N~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~~~~ 955 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLS-----SPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKSTSL 955 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 446666777777777777777666532 222233333444444455566677777777777777776543
No 326
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.68 E-value=2.6e+02 Score=27.00 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
+.+.+++....+.++++.+.+........+++++.++.++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555554443
No 327
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=45.56 E-value=1.7e+02 Score=27.11 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 159 EDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (200)
Q Consensus 159 EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~v 190 (200)
-|.||.=|..-...-..+.-+-..+++++...
T Consensus 97 LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~ 128 (383)
T PF04100_consen 97 LDNAKRNLTQSITTLKRLQMLVTAVEQLKELA 128 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35565555555555555555555555554443
No 328
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.47 E-value=1.2e+02 Score=26.64 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
|.+.|.+++.++.+.|..+....-+-.++.++-.++-.+++++-
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555555555555555555555555443
No 329
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=45.31 E-value=1.2e+02 Score=22.27 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029028 142 ASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (200)
Q Consensus 142 ~i~~we~rA~~AL~~G~EDLAr~AL~rk~~ 171 (200)
.+.+.-.+|+.++..|+.+-|+..+..-..
T Consensus 44 ~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~ 73 (103)
T PF14346_consen 44 EAREKLQRAKAALDDGDYERARRLAEQAQA 73 (103)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444566777788877666554444333
No 330
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=45.20 E-value=2.8e+02 Score=26.48 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=40.1
Q ss_pred CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 029028 98 EDPE---KILEQAVLEMNDDLVKMRQATAQVLAS-------QKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 98 EDP~---~mLdQ~IReme~~l~kar~~lA~v~A~-------~k~le~k~~~~~~~i~~we~rA 150 (200)
-||+ ..+-+.|-.++.++.+.+..++.+... ...++.++..++++|++...+.
T Consensus 275 lDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 275 IDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3887 344478888888898888888887663 5677888888888888766664
No 331
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.60 E-value=4e+02 Score=27.98 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i 143 (200)
...|++-|-|.+-.+...+..+..+.......-.+++++..++
T Consensus 453 ~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqari 495 (1118)
T KOG1029|consen 453 LQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARI 495 (1118)
T ss_pred HHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333333333333333
No 332
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=44.57 E-value=1.1e+02 Score=25.65 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=4.6
Q ss_pred CCCcccccCC
Q 029028 60 SRSHCYRQGG 69 (200)
Q Consensus 60 ~~~~~~~~~~ 69 (200)
||.-|-|.-|
T Consensus 54 NDdyCDC~DG 63 (176)
T PF12999_consen 54 NDDYCDCPDG 63 (176)
T ss_pred cCcceeCCCC
Confidence 4444555443
No 333
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.47 E-value=1.3e+02 Score=23.98 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i 143 (200)
+-...|+..|+.++..+.+....+-......+.+++++.+....+
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334566666666666666666666666666666666666665554
No 334
>PRK11519 tyrosine kinase; Provisional
Probab=44.37 E-value=3.4e+02 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQA 121 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~ 121 (200)
|++.+.++++++.++...
T Consensus 272 L~~ql~~l~~~L~~aE~~ 289 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENK 289 (719)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 335
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=44.14 E-value=3e+02 Score=26.49 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 029028 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA 165 (200)
Q Consensus 114 ~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~A 165 (200)
++.+...-+-=-.|+.+..+.+-++++.+++.+++=+..=-.+=+|+.|-.-
T Consensus 351 ~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~ 402 (446)
T PF07227_consen 351 QIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEEEYASRY 402 (446)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444444444456788888899999999999998877766667778877443
No 336
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=44.13 E-value=1.9e+02 Score=29.29 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
.-|-++||..+..|...+..-.++-..+.+.|.+...++.+-.+.+.+
T Consensus 425 Iplv~~~r~aK~~i~~~~~~~~~a~~ar~r~e~r~~R~~r~~~~~~~~ 472 (695)
T PRK05035 425 IPLVQYYRQAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREAR 472 (695)
T ss_pred CcHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999988887776666666666777777766666555555444
No 337
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=44.07 E-value=2.7e+02 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 124 QVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
...+....+..++..++.+++.++...
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~ 195 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALK 195 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 338
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.07 E-value=2.4e+02 Score=25.26 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~E 159 (200)
++.|...|..+.+++.+.++.+..+.++...++.+++....+.+.-++|-. +|++=+-
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~-sLq~vRP 221 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ-SLQSVRP 221 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCh
Confidence 478889999999999999999999999999999999999999988888754 4455443
No 339
>PLN02769 Probable galacturonosyltransferase
Probab=43.76 E-value=62 Score=32.36 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQV--LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v--~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a 176 (200)
.-+.|-|-.+|.|+++|..||.=++.. ......+- .++...|.+.+.-.-.| ..|.||=..+..+....+..+
T Consensus 174 ~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~---~el~~~i~e~~~~l~~~--~~d~dlp~~~~~~~~~m~~~~ 248 (629)
T PLN02769 174 HKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLT---RELKQNIQEHERVLSES--ITDADLPPFIQKKLEKMEQTI 248 (629)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHH---HHHHHHHHHHHHHHhhc--cccccCChhHHHHHHHHHHHH
Confidence 344566777788888888887744211 11222222 33333344333322222 336777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 029028 177 NALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 177 ~~lq~qld~~~~~ve~Lk~~ 196 (200)
...+.........+.+|+..
T Consensus 249 ~~ak~~~~dc~~~~~klr~~ 268 (629)
T PLN02769 249 ARAKSCPVDCNNVDRKLRQI 268 (629)
T ss_pred HHHHhhccchHHHHHHHHHH
Confidence 66666664444444444443
No 340
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=43.58 E-value=3.5e+02 Score=27.02 Aligned_cols=46 Identities=9% Similarity=0.225 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~ 144 (200)
.-..++.|.+++|.+++..++...-..+.....|++++.++..++.
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456788888888888888888777777777777777777765554
No 341
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.49 E-value=3.2e+02 Score=26.65 Aligned_cols=81 Identities=9% Similarity=0.120 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
+|--+-+=++.+|+++++.-=+-. .-++-.++.+.+.+...++.|.....++..|.-+++......-.++.+=...+
T Consensus 359 vfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei 438 (527)
T PF15066_consen 359 VFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEI 438 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555566777777765421111 23456778888888999999999999988888888888777777777666555
Q ss_pred hcCC
Q 029028 155 QKGE 158 (200)
Q Consensus 155 ~~G~ 158 (200)
+.-+
T Consensus 439 QqKn 442 (527)
T PF15066_consen 439 QQKN 442 (527)
T ss_pred HHhh
Confidence 4444
No 342
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=43.41 E-value=2.5e+02 Score=29.46 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCHHHHHHHHHHH-----------HHHHHHH
Q 029028 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ----LALQKGEEDLAREALKRR-----------KSYADNA 176 (200)
Q Consensus 112 e~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~----~AL~~G~EDLAr~AL~rk-----------~~~e~~a 176 (200)
..-+.++...+....+.....|.+++++..+..+|++-.. .|++ -.-|..||++. ...++..
T Consensus 368 ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQ---YQQAi~ALekAk~Lc~l~dLt~~~~e~~~ 444 (1480)
T COG3096 368 NEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQ---YQQAIAALERAKELCHLPDLTADSAEEWL 444 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHhcCccccchhhHHHHH
Confidence 3345556666677777777788888888888888864211 0111 12233344443 3456667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 029028 177 NALKAQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 177 ~~lq~qld~~~~~ve~Lk~~l~~ 199 (200)
+.+.+.-+..+..+-.|+..+.+
T Consensus 445 ~~f~A~~e~~Te~lL~Le~kms~ 467 (1480)
T COG3096 445 ETFQAKEEEATEKLLSLEQKMSM 467 (1480)
T ss_pred HHHHHhHHHHHHHHHHHHHhccH
Confidence 77777777777777777766544
No 343
>PLN02320 seryl-tRNA synthetase
Probab=42.74 E-value=2.8e+02 Score=27.03 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 163 REALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 163 r~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
.+..++.+.+.+++..+++++...+..+..+-
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777766666553
No 344
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=42.48 E-value=2.1e+02 Score=24.15 Aligned_cols=51 Identities=8% Similarity=0.119 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.+|++--..+.+.+.++.....++.......+.++.+++.++.+.-+.|+.
T Consensus 75 ~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~ 125 (205)
T PRK06231 75 RFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANY 125 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555544444444444444444444444444444433
No 345
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=42.34 E-value=1.7e+02 Score=23.18 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
+|+.--..+.+.+.++......+.......+.++...+.++...-..|
T Consensus 30 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A 77 (159)
T PRK09173 30 SLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAA 77 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444443333333
No 346
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=42.21 E-value=3.2e+02 Score=26.15 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
|--.-|+..|-+.+.++...+.++.+.....+.+++++.+.+..++.++.
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 44466666666677777777777776666667777777666666665544
No 347
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.08 E-value=1.5e+02 Score=22.24 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 160 DLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
+.-...-.++..++...+.++.+++....++..++..+.
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555677888888888888888888888887765
No 348
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=41.98 E-value=58 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 120 QATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 120 ~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
+.|.+.+..++.++.++..++.+|-+.|..
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655543
No 349
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=41.96 E-value=3.1e+02 Score=26.07 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQ 124 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~ 124 (200)
.-+.|+++.+..+|+.++.
T Consensus 220 ~kVdDLQD~VE~LRkDV~~ 238 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDVVQ 238 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466666666666665543
No 350
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=41.95 E-value=77 Score=24.24 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhh
Q 029028 186 QKNVVNNLVSNT 197 (200)
Q Consensus 186 ~~~~ve~Lk~~l 197 (200)
+++.+++|...|
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666655
No 351
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.78 E-value=1.6e+02 Score=22.73 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 119 r~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
...+.-.....+.++.+...+++.+.+.+++.+.++..|
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333446666666777777777777777776666654
No 352
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=41.62 E-value=1.5e+02 Score=22.37 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=42.5
Q ss_pred HHHHHHHhhccC---CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 87 KSYANAILSSFE---DPEKILEQAVLEM--NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 87 ra~in~~ldk~E---DP~~mLdQ~IRem--e~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
+..+..+-+++. +--..+++.++.+ .+++.+.+..++++...-+.++.+++......+-+-++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 3346788888888 88888888888888887777777777776666555443
No 353
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=41.33 E-value=3.4e+02 Score=26.22 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--------------HHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL--------------AREALKRR 169 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDL--------------Ar~AL~rk 169 (200)
+...+.+.+..+..++..+ ...+.++.++......+..|+.....+.. ++-+- -..+..+.
T Consensus 216 ~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~-~~l~~~~~~~~~~~~~~~~l~s~~~EL 290 (522)
T PF05701_consen 216 WEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKE-SKLEEEAEAKEKSSELQSSLASAKKEL 290 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+....+...+..+..+...++.|+..|
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~EL 318 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSEL 318 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 354
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=41.11 E-value=2.8e+02 Score=27.23 Aligned_cols=34 Identities=6% Similarity=0.092 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 161 LAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
...+...+....+.+++.+...++++....+.+.
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666777777777777777777776665543
No 355
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.62 E-value=3.2e+02 Score=25.77 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
+.|-+.++.+...|.+.+..+-..+ ...-.+++.+-++|.++..++..+-..|.
T Consensus 137 ~~la~~~n~~~~~l~~~~~~~~~~i---~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~ 190 (456)
T PRK07191 137 NAMALRFNNVNNFIVQQKKSIGQQR---DATVKQINSLTRSIADYNQKILKNRSDGN 190 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4445566666666666666654433 23345667777777777777776655554
No 356
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=40.54 E-value=3.1e+02 Score=25.56 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=67.0
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 029028 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE---QASEDWYRK 149 (200)
Q Consensus 73 ~~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~---~~i~~we~r 149 (200)
+.-+.||+.-.+ ++++.. ...-.++.+.+.++.+.++.+++..+.........++.... ...++-.+-
T Consensus 358 ~l~~Pif~gg~~--~a~v~~-------A~a~~~~a~~~y~~t~~~a~~ev~~al~~~~~~~~~~~~~~~~~~~a~~~~~~ 428 (488)
T PRK09915 358 GLKLPLFDGGRL--NANLEG-------TRAASNMMIERYNQSVLNAVRDVAVNGTRLQTLNDEREMQAERVEATRFTQRA 428 (488)
T ss_pred ceeeecCCchHH--HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668865322 233222 22334555556666666666666666666655555554443 444555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 150 AQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (200)
Q Consensus 150 A~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve 191 (200)
++...+.|..++---.-.+..-+..+...++.+.+.+...|.
T Consensus 429 a~~~Y~~G~~~~l~vl~Aq~~l~~a~~~~~~~~~~~~~~~v~ 470 (488)
T PRK09915 429 AEAAYQRGLTSRLQATEARLPVLAEEMSLLMLDSRRVIQSIQ 470 (488)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999888776666777777777777777777666654
No 357
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.52 E-value=3.3e+02 Score=25.89 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
..|-+.|..+-.+|.+.+..+...+ ...=.+++.+-++|.++..+...+-..|.
T Consensus 132 ~~L~~~~n~~~~~L~~~~~~~~~~i---~~~V~~iN~l~~~Ia~LN~~I~~~~~~g~ 185 (483)
T PRK07521 132 QDLANSLNDASDAVQSARADADAEI---ADSVDTLNDLLAQFEDANNAVVSGTATGR 185 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3444556666666666666554443 33345677777778888887776655554
No 358
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=39.93 E-value=2.1e+02 Score=23.54 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE----------EDLAREALKRRKSYAD 174 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~----------EDLAr~AL~rk~~~e~ 174 (200)
.+..+.|++.|...+..+....+.......+.............+...-+..|. +.+.-.+..+....+.
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~ 93 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEA 93 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777777777777777777777777777777777777666666554 2233344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029028 175 NANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 175 ~a~~lq~qld~~~~~ve~Lk~ 195 (200)
+...+...++.....+.....
T Consensus 94 ~~a~l~~~l~~~~~~ia~~~r 114 (158)
T PF09486_consen 94 ELAALRQALRAAEDEIAATRR 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544443
No 359
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.79 E-value=88 Score=25.91 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
..+.+.+..+..-...++...+....++.++..+...+....
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 360
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=39.70 E-value=2e+02 Score=23.23 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHH
Q 029028 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA--------REALKRRKS 171 (200)
Q Consensus 100 P~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLA--------r~AL~rk~~ 171 (200)
|+..++--+..++.+|.++...+++....+...+.-|.....+++.-......|--+-++-.| +....+...
T Consensus 2 pve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~ 81 (136)
T PF11570_consen 2 PVEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRR 81 (136)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHH
Confidence 666666666666777777777777766666666666666666555555544444322222111 222234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029028 172 YADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 172 ~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+...++.-+++++..+.....+.
T Consensus 82 a~~dv~nkq~~l~AA~~~l~~~~ 104 (136)
T PF11570_consen 82 AQKDVQNKQNKLKAAQKELNAAD 104 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555554444444
No 361
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=39.64 E-value=2.1e+02 Score=23.35 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVK--------MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-EDLAREAL 166 (200)
Q Consensus 102 ~mLdQ~IReme~~l~k--------ar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~-EDLAr~AL 166 (200)
+-+.|.+-|+..++.+ ..+.+++...+..+.+.+.++++.++++|+.....++..++ -|+|-.+|
T Consensus 47 KsiK~~l~e~~~~~l~~~~~~~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~l 120 (157)
T PF14235_consen 47 KSIKQHLAELAADLLELELAARAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALL 120 (157)
T ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHH
Confidence 4455555555544443 33445555556666666666666666666666666666653 45554443
No 362
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.63 E-value=2.5e+02 Score=24.28 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 159 EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
|+.+..-=.....+.+....++.++..++..|.++++.
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555556666666666666666666544
No 363
>PRK10780 periplasmic chaperone; Provisional
Probab=39.57 E-value=2e+02 Score=23.12 Aligned_cols=80 Identities=10% Similarity=0.178 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 029028 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (200)
Q Consensus 98 EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~ 177 (200)
-|+.+++.++ -+..+.-.+.... .-..+..++....++....++++..+..--...+++.-++...+..++.....
T Consensus 29 Vd~q~il~~~-p~~k~~~~~le~~---~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~ 104 (165)
T PRK10780 29 VNMGSIFQQV-PQRTGVSKQLENE---FKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQ 104 (165)
T ss_pred eeHHHHHHHC-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777766642 2222222222222 22233344444444555555555543332222334444444444445555554
Q ss_pred HHHH
Q 029028 178 ALKA 181 (200)
Q Consensus 178 ~lq~ 181 (200)
.++.
T Consensus 105 ~~qq 108 (165)
T PRK10780 105 AFEQ 108 (165)
T ss_pred HHHH
Confidence 4443
No 364
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.57 E-value=3.5e+02 Score=25.92 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a 176 (200)
..|-+.|+.+-.+|.+.+..+...+ ...=.+++.+-++|.++.++...+-..|.. +-..+.++..+.+++
T Consensus 149 ~~La~~~n~~~~~L~~~~~~~~~~i---~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~--~ndLlDqRD~ll~~L 218 (507)
T PRK07739 149 QALAETFNYLSQSLTDIQNDLKSEI---DVTVKEINSLASQISDLNKQIAKVEPNGYL--PNDLYDQRDLLLDEL 218 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHHH
Confidence 4455566677777777666655444 334456777777788888887776555542 223444444443333
No 365
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=39.53 E-value=2.3e+02 Score=23.89 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=40.7
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 91 n~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
-.+++.+|--..-.+..+.+....|..+...+..+....+..+.++..+...+..+......+
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a 128 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANA 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665566666666666667777777777666666666666666666666666555443
No 366
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=39.46 E-value=1.3e+02 Score=20.73 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 126 LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 126 ~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
-++..+++.++..++..++..+.+.- +..-+++.--.=+..-...+..++.+++.+...+..|
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~-----n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLS-----NENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----STTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-----CccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777777766532 2222222222222333344444455555554444444
No 367
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.32 E-value=2.8e+02 Score=24.80 Aligned_cols=95 Identities=6% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHH-HHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 78 LFD-RLARVVKSYANAI-LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 78 if~-Rl~~lvra~in~~-ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
++. .+.+.+.+....- ++.-++-..-+....-+++.+|......+-.+.......+.++++...++.+++......-.
T Consensus 15 ~~s~~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 15 IISTAFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHhhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 156 KGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 156 ~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
. .-.|..-+.+++..++
T Consensus 95 ~--------I~~r~~~l~~raRAmq 111 (265)
T COG3883 95 N--------IVERQELLKKRARAMQ 111 (265)
T ss_pred H--------HHHHHHHHHHHHHHHH
No 368
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.25 E-value=3e+02 Score=25.13 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 84 RVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 84 ~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
|-+++.+-+..+++.|-+ -.|.|++.+|..+|..-..=...+-..+--+++++++|..+.+-
T Consensus 71 RHLkakLkes~~~l~dRe----tEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQv 132 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRE----TEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQV 132 (305)
T ss_pred HHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666643 34457777777777665555444444444555666666555443
No 369
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.19 E-value=94 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 172 YADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 172 ~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
...++..++.++++++...++|+.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 370
>PRK00295 hypothetical protein; Provisional
Probab=39.03 E-value=85 Score=22.07 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 172 YADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 172 ~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
.++.++.|...+.++..+++.|+..
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 371
>PRK00736 hypothetical protein; Provisional
Probab=38.99 E-value=85 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 171 SYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 171 ~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
-.++.++.|...+.++..+++.|+..+
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544443
No 372
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.61 E-value=1.5e+02 Score=21.55 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~ 186 (200)
.-++.+....-+.+.........++.++...-.+++.|.+.... |=..=..=|..||+++..|+.+++.-
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~e--------LE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYE--------LEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666667778888888888888777776543 22234455677888888888887654
No 373
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=38.53 E-value=3e+02 Score=24.84 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029028 176 ANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 176 a~~lq~qld~~~~~ve~Lk~ 195 (200)
...++..++.+++.+.+|+.
T Consensus 171 ~~~~~~~l~~leqRi~DL~~ 190 (333)
T PF05816_consen 171 LADLEQALFRLEQRIQDLQL 190 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555443
No 374
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=38.52 E-value=1.3e+02 Score=20.72 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=25.4
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~ 138 (200)
+|++..-...|..-|..+..++..++..+..+..+..+...+++.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455566666666666666666665555555555554443
No 375
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=38.51 E-value=2.3e+02 Score=23.61 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 100 PEKILEQAVLEMNDDLVKMRQATA-QVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 100 P~~mLdQ~IReme~~l~kar~~lA-~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
...++++.-++++....++....- .....+..+++++.....++.+++++.
T Consensus 36 A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl 87 (201)
T PF12072_consen 36 AEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRL 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665554444433332 222333445666666666666665543
No 376
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.50 E-value=2.2e+02 Score=23.26 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMR-QATAQVLASQKRLENKCKAAEQA 142 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar-~~lA~v~A~~k~le~k~~~~~~~ 142 (200)
..+...+-+++.++...+ ...+.......+++++++.++.+
T Consensus 54 ~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 54 YLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443332 23344555555566666555543
No 377
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=38.50 E-value=3.7e+02 Score=25.84 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=58.0
Q ss_pred CcHHHHHHHHHHHHHHHHhh---ccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 029028 76 MNLFDRLARVVKSYANAILS---SFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR- 148 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~ld---k~EDP---~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~- 148 (200)
.+||--+.+-++..+-.+=| .++-- -...++..++.+-+-.+++.++..+..+++..+.+..++.....+-++
T Consensus 59 Lailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~ 138 (499)
T COG4372 59 LAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQE 138 (499)
T ss_pred HHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666565555555433221 11111 134445555666655556666666666666666666655554433221
Q ss_pred HHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 149 KAQLALQKGE--EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 149 rA~~AL~~G~--EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
.|+.--+..| ..|+ ........+++++..+.++-.++...+..||..
T Consensus 139 lar~t~Q~q~lqtrl~-~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~ 187 (499)
T COG4372 139 LARLTKQAQDLQTRLK-TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQ 187 (499)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1221111111 1222 223344556666666666666666666666554
No 378
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=38.48 E-value=1.9e+02 Score=22.55 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 117 kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.+...++.+...+++++.+..++......+.++...=+. --+-...+|.+.-++++.+..++..+......++....
T Consensus 37 ~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~--~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~~~L~~v~~ 113 (121)
T PF06320_consen 37 HLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLK--LVDSFNDALKEIGDVENWAEMIERDLRVIEETLRYVYE 113 (121)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777888888888888887777777777655332 23345567888888999999888888887777666544
No 379
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=38.47 E-value=2.9e+02 Score=26.72 Aligned_cols=77 Identities=6% Similarity=0.143 Sum_probs=57.1
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 73 ~~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
+..+||=+++...+...+.....-+.+-..-|+..|..+..++....+.+.. .+.++..++..++..+.+++.+...
T Consensus 396 ~~~~Gia~~l~~~l~s~~~~t~g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~---~e~~~~~qf~~m~~~~~~m~sq~~~ 472 (483)
T COG1345 396 GKDTGIAKTLGEGLNSLLAVTGGIITGRTDSLNKQIKSLDKDIKSLDKRLEA---AEERYKTQFNTLDDMMTQMNSQSSY 472 (483)
T ss_pred ccccchHHHHhhhhHHHHhhccceeeccccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788889998888888887777777788888888888888777776654 4556677777777777776665543
No 380
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.41 E-value=3.6e+02 Score=25.67 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029028 97 FEDPEKILEQAVLEMNDDLVKMRQ---------ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (200)
Q Consensus 97 ~EDP~~mLdQ~IReme~~l~kar~---------~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~ 167 (200)
+-||-..|..-..-+.+.++.-+. .|-.+|+..+..+.....+...+++.+.+...-|...++.-|+.+.+
T Consensus 57 inDP~~ALqRDf~~l~Ek~D~EK~p~ct~spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaae 136 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGEKIDEEKIPQCTESPLDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAE 136 (561)
T ss_pred cCChHHHHHHHHHHHhccccccccceeccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 168 R---RKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 168 r---k~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
- -..+|.+.+++++|++=...++.+..
T Consensus 137 GDDlt~~LEKEReqL~QQiEFe~~e~kK~E 166 (561)
T KOG1103|consen 137 GDDLTAHLEKEREQLQQQIEFEIEEKKKAE 166 (561)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 381
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=38.16 E-value=63 Score=25.78 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK 117 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~k 117 (200)
..+-+.+-++-++|-++++.|.-.+.|+|.++|++.=++-
T Consensus 84 Pik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 84 PIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999999999999999876553
No 382
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=37.90 E-value=2.9e+02 Score=24.43 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 160 DLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
++.+++|....+++--+..+...++...+.|+.+...+
T Consensus 48 ~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~ 85 (281)
T PF12018_consen 48 ELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRF 85 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55799999999999999999999999888888877654
No 383
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=37.85 E-value=4.3e+02 Score=26.50 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
..|.+.|..++..+...++.+...+.+-...+..++..-.++.+...+..
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~ 131 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQL 131 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666655555555543
No 384
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=37.56 E-value=5.5e+02 Score=27.61 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh
Q 029028 165 ALKRRKSYADNANALKAQL--DQQKNVVNNLVSNT 197 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~ql--d~~~~~ve~Lk~~l 197 (200)
.++.+.-+++++..+.++- ..++.++-+|+..+
T Consensus 276 LleekeMLeeQLq~lrarse~~tleseiiqlkqkl 310 (1195)
T KOG4643|consen 276 LLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKL 310 (1195)
T ss_pred HHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHH
Confidence 3445555555555555554 34444444444443
No 385
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=37.49 E-value=6.7e+02 Score=28.57 Aligned_cols=85 Identities=8% Similarity=0.063 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (200)
Q Consensus 112 e~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve 191 (200)
...+..--...++......++..++..+..+..++......+ ..+.+.+-+.+-.++..++.+.......+..+..+-.
T Consensus 1045 ~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~-~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNs 1123 (1822)
T KOG4674|consen 1045 QSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESR-HALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNS 1123 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444556666666666677777777766666555443 4445556667777777777777777777777666655
Q ss_pred HHHhhh
Q 029028 192 NLVSNT 197 (200)
Q Consensus 192 ~Lk~~l 197 (200)
.|..++
T Consensus 1124 lLh~qi 1129 (1822)
T KOG4674|consen 1124 LLHDQF 1129 (1822)
T ss_pred HHHHHH
Confidence 554443
No 386
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=37.28 E-value=1.7e+02 Score=21.67 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
..|-.|+....+....+-.-.....-++.++..+..++.+-.++--.|
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~ 50 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAA 50 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666555666666666666666655555544433
No 387
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.03 E-value=3.5e+02 Score=25.11 Aligned_cols=94 Identities=10% Similarity=0.110 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-------EDLAREALKRRKSYADN 175 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~-------EDLAr~AL~rk~~~e~~ 175 (200)
-....|..|..-.......+-.+...-.++..++....+.|..+++..-.=+..-- +.|+ ++-.+..+....
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls-~~~~~y~~~s~~ 295 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELS-EVQEKYKQASEG 295 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHhhH
Confidence 34556667777777777777777777777777777777777777776554333221 1111 223333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029028 176 ANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 176 a~~lq~qld~~~~~ve~Lk~~l 197 (200)
+..+..+|.+....+++.|..+
T Consensus 296 V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 388
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.99 E-value=4.3e+02 Score=26.19 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
.|-+.|..+..+|.+.+..+-..+. ..=.+++.+-++|+++.+++..+-..|.
T Consensus 150 ~La~~~n~~~~~L~~~~~~~~~~i~---~~V~~iN~ll~qIa~LN~qI~~~~~~g~ 202 (627)
T PRK06665 150 SLGERIHDRYRSLERIRDMANDEIE---ITVEEINNILRNIADLNEQIVKSQAMGD 202 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3444555555555555555444332 2334667777777777777776655554
No 389
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.96 E-value=3.9e+02 Score=25.72 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA--LKRRKSYADNANALKAQLDQQKNVVN 191 (200)
Q Consensus 114 ~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~A--L~rk~~~e~~a~~lq~qld~~~~~ve 191 (200)
++.+....--+...+.+.++.+-.++.....+.+.++..+.++-+.-.=..- .......++++..++.+++-...+.+
T Consensus 184 e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qld 263 (447)
T KOG2751|consen 184 ELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLD 263 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 3444444445555666666666666666677777777776666554332222 22334456778888888888888888
Q ss_pred HHHhh
Q 029028 192 NLVSN 196 (200)
Q Consensus 192 ~Lk~~ 196 (200)
+|++.
T Consensus 264 kL~kt 268 (447)
T KOG2751|consen 264 KLRKT 268 (447)
T ss_pred HHHhh
Confidence 88754
No 390
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=36.79 E-value=2.5e+02 Score=23.52 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQV-------LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v-------~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~ 178 (200)
+.+..+..++.+.+..+.+. ......++.++.+++...+.-+.+-..--+.-..+|.+.=..|..++...+..
T Consensus 115 ~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~ 194 (216)
T cd07627 115 QYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 029028 179 LKAQLDQQKNVVNNL 193 (200)
Q Consensus 179 lq~qld~~~~~ve~L 193 (200)
+-...-+....+.++
T Consensus 195 ~~e~~ie~~k~~ie~ 209 (216)
T cd07627 195 YLESAIESQKELIEL 209 (216)
T ss_pred HHHHHHHHHHHHHHH
No 391
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=36.77 E-value=1.8e+02 Score=22.32 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
.....+..++.+..+.++...+....++.+++.++..-+-.+.+|+..+
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l 98 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSEL 98 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 3344556666677777777777777777777777766555555555543
No 392
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.68 E-value=2.3e+02 Score=23.00 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 133 ENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 133 e~k~~~~~~~i~~we~rA 150 (200)
..++..+...++.+..++
T Consensus 121 ~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 121 AQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 393
>PLN02939 transferase, transferring glycosyl groups
Probab=36.63 E-value=4e+02 Score=28.23 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKR-LENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~-le~k~~~~~~~i~~we~rA~~A 153 (200)
...|+-+++|++..+..+...+.++-..+.. +=.+++.++...++..+++..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (977)
T PLN02939 266 RSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKA 319 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999888887777665544322 2233344444444444444443
No 394
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=36.62 E-value=2.9e+02 Score=24.04 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 029028 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (200)
Q Consensus 97 ~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr 163 (200)
+++-.+...+.+++.++........+-.+......|+.+..+++.....+...+..- ...++.|+.
T Consensus 17 ~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~-~eEk~~Le~ 82 (246)
T PF00769_consen 17 MEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ-EEEKEQLEQ 82 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344445555666666666666666666666677777777777777777776655432 334444543
No 395
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=36.53 E-value=94 Score=25.48 Aligned_cols=95 Identities=9% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATA---QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA---~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
|++.|.|....+.+.-..+. ..---.+-+...-+.+...+..|......+++.+.+.+-...-.=+..+++.++.|.
T Consensus 1 ~~~~~~e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~ 80 (155)
T PF07464_consen 1 IQQHAQEFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLR 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 029028 181 AQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 181 ~qld~~~~~ve~Lk~~l~ 198 (200)
.+.-+....+.+|...+.
T Consensus 81 k~~Pev~~qa~~l~e~lQ 98 (155)
T PF07464_consen 81 KANPEVEKQANELQEKLQ 98 (155)
T ss_dssp G-SHHHHHT-SSSHHHHH
T ss_pred hcChHHHHHHHHHHHHHH
No 396
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=36.47 E-value=3.1e+02 Score=25.37 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 029028 115 LVKMRQATAQV 125 (200)
Q Consensus 115 l~kar~~lA~v 125 (200)
+.+++..++.+
T Consensus 127 l~qaqa~l~~a 137 (415)
T PRK11556 127 LAQAQGQLAKD 137 (415)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 397
>PRK08724 fliD flagellar capping protein; Validated
Probab=36.25 E-value=2.8e+02 Score=28.13 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA~ 151 (200)
+..+++.+..+++.++.|..
T Consensus 622 L~~~i~~l~dqi~~Le~Rle 641 (673)
T PRK08724 622 LREQNYRLNDDQVALDRRME 641 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 398
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=35.95 E-value=1.6e+02 Score=30.69 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
..++..++++++..++.++++.+.+.. +..-+.+.-.+-+..-.+.+..++.+++.++..+..|+..
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~-----N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS-----IPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKSL 993 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677777777777666665542 2222333333333444445555666666666666666543
No 399
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=35.85 E-value=2.5e+02 Score=23.17 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 029028 159 EDLAREALKRR 169 (200)
Q Consensus 159 EDLAr~AL~rk 169 (200)
.+|-..++.++
T Consensus 175 ~~Lv~Rwm~~k 185 (194)
T PF08614_consen 175 RELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 400
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=35.84 E-value=3.2e+02 Score=24.40 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ-KGE 158 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~-~G~ 158 (200)
+.|-+.|..+-.+|...+..+-.-+ ...=.+++.+-++|.++..++..+-. .|.
T Consensus 137 ~~l~~~~n~~~~~L~~~~~~~~~~i---~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~ 191 (322)
T TIGR02492 137 QALANSFNQTSNELQDLRKGINAEI---KSAVTEINSLLKQIASLNKEIQQVEAKSGQ 191 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4455666666666666666555443 33344667777777777777776554 443
No 401
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=35.75 E-value=4.9e+02 Score=27.46 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------H----HH-H-----HHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE------E----DL-A-----REALKRRKSYA 173 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~------E----DL-A-----r~AL~rk~~~e 173 (200)
..++...+.+..+....+....+|.+.+..+...+.|+..-..++..=- . |+ + ++--+.++++.
T Consensus 554 r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~ 633 (984)
T COG4717 554 RIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELT 633 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888899999999999999999999998888765321 1 11 1 23344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 029028 174 DNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
.++..+....+.++..|+.|-..
T Consensus 634 ~q~~~L~ee~~af~~~v~~l~~~ 656 (984)
T COG4717 634 HQVARLREEQAAFEERVEGLLAV 656 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 77777777777777777776543
No 402
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=35.65 E-value=5.2e+02 Score=26.75 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 149 KAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 149 rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.-..+-.....-|+-++-+|...+|..+..+-...|.+..++..|+..+
T Consensus 391 ~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 391 LKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344445566778888888888888888888888888888888777654
No 403
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.57 E-value=5.6e+02 Score=27.07 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 131 RLENKCKAAEQASEDWYR 148 (200)
Q Consensus 131 ~le~k~~~~~~~i~~we~ 148 (200)
..+++|+........+..
T Consensus 421 ~~e~ry~klkek~t~l~~ 438 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQ 438 (980)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 404
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=35.51 E-value=2e+02 Score=21.82 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
++.|...+..+..++..+............+.+.++...+++.
T Consensus 74 ~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek~~ 116 (141)
T TIGR02473 74 DQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQ 116 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444443333333444444444444333
No 405
>PRK04406 hypothetical protein; Provisional
Probab=35.30 E-value=1.1e+02 Score=22.05 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 176 ANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 176 a~~lq~qld~~~~~ve~L 193 (200)
++.|...+.++..+++.|
T Consensus 27 Ie~LN~~v~~Qq~~I~~L 44 (75)
T PRK04406 27 IEELNDALSQQQLLITKM 44 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 406
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=35.23 E-value=2.8e+02 Score=27.16 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 029028 84 RVVKSYANAILSSFE-DPEKILEQAVLEMNDDL---VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (200)
Q Consensus 84 ~lvra~in~~ldk~E-DP~~mLdQ~IReme~~l---~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~E 159 (200)
+++...+...+++.. +++.++........+.+ .+-..--......+..++..++.+...+.+...-...++++...
T Consensus 383 tlve~~~~k~l~k~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~~~e~~~~ 462 (542)
T PF10079_consen 383 TLVEPKVAKKLEKLGLSVEDVFEDGEELLKERWLEEQDPSEIEDDFEEEKEQLEAQFEPLKEKAAKIDPTLEGLVEKNES 462 (542)
T ss_pred EEEcHHHHHHHHHcCCCHHHHhhccHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 160 DLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..-+..-.=...+.. ..+...+..-+++++++..|
T Consensus 463 ~~~~ql~~Le~k~~~---a~~rk~~~~l~q~~~l~~~L 497 (542)
T PF10079_consen 463 KILKQLDYLEKKLLK---AEKRKHETALRQLDRLENSL 497 (542)
T ss_pred HHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHhhc
No 407
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=35.12 E-value=2.3e+02 Score=22.53 Aligned_cols=12 Identities=8% Similarity=0.005 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 029028 139 AEQASEDWYRKA 150 (200)
Q Consensus 139 ~~~~i~~we~rA 150 (200)
++.+.+.|+-.+
T Consensus 32 ~d~el~QLefq~ 43 (131)
T PF11068_consen 32 LDQELQQLEFQG 43 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 408
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=34.99 E-value=5.6e+02 Score=26.95 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
..++..+..++..+..+.+....++..+..........+..-..+|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 759 (1047)
T PRK10246 713 TVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQ 759 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33366666666666666667677777777777666666665555544
No 409
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.99 E-value=4e+02 Score=25.20 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029028 174 DNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~Lk 194 (200)
+.+..+...++.++..+.+|+
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544
No 410
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=34.92 E-value=1.9e+02 Score=26.64 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 029028 137 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (200)
Q Consensus 137 ~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~l 179 (200)
..++..|-+|..+...+...||++....+-.+....+.....+
T Consensus 315 R~~ER~IR~~Kr~~~~~~~~~d~~~~~~~~~~~r~~q~~~r~~ 357 (361)
T PF06152_consen 315 RYLERQIRKWKRRLAAAEALGDDENIQKAKAKVRQQQAKYRDF 357 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677788888888888899888777766666666555444
No 411
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=34.91 E-value=2.3e+02 Score=23.80 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=10.0
Q ss_pred ccCCCCccc---ccCCCcc
Q 029028 57 APSSRSHCY---RQGGGAL 72 (200)
Q Consensus 57 ~~~~~~~~~---~~~~~~~ 72 (200)
.+-+||.|. |=-|+-+
T Consensus 92 s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 92 SRVNDGICDYDICCDGSDE 110 (176)
T ss_pred hhhcCCcCcccccCCCCCC
Confidence 334677777 6666654
No 412
>PRK04325 hypothetical protein; Provisional
Probab=34.90 E-value=1.1e+02 Score=21.83 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 171 SYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 171 ~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
-.++.++.|...+.++..+++.|+..+
T Consensus 20 fQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 20 FQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 413
>PF13514 AAA_27: AAA domain
Probab=34.78 E-value=5.7e+02 Score=26.96 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C--HHHH----------HHHHHHHHHHHHHH
Q 029028 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG----E--EDLA----------REALKRRKSYADNA 176 (200)
Q Consensus 113 ~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G----~--EDLA----------r~AL~rk~~~e~~a 176 (200)
.........+..+.......+.++..+....+.|...=..++..- + .+-+ +..+.+...+..++
T Consensus 673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri 752 (1111)
T PF13514_consen 673 ARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRI 752 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666777777778888888888888888777555322 1 1222 33344555556666
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 029028 177 NALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 177 ~~lq~qld~~~~~ve~Lk~~l 197 (200)
..++..++.+...+..|-..+
T Consensus 753 ~~~~~~~~~f~~~~~~L~~~l 773 (1111)
T PF13514_consen 753 EQMEADLAAFEEQVAALAERL 773 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 666666666666666665543
No 414
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=34.71 E-value=2.5e+02 Score=22.72 Aligned_cols=49 Identities=10% Similarity=-0.003 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
++.-..++...+..+......|+..++-+-|+..+.+..=+..-...++
T Consensus 102 L~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky~~kl~~~i~ 150 (157)
T TIGR00714 102 LESFIKRVKKMFQTRHQLLVEQLDNQTWAAAADYTRKLRFLDKLRSSAE 150 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666777777777788999998888888777766554444443
No 415
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=34.70 E-value=3.1e+02 Score=23.87 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~E--DP~-~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~ 145 (200)
||+++.+.|.+ +--+++ ||- .--.+||.+++.+|.++-+++-.+...++.+-.-+.+....+..
T Consensus 2 ~~~~~~d~~~~----~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~ 68 (234)
T cd07665 2 MFNKATDAVSK----MTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAM 68 (234)
T ss_pred hhhHHHHHHhc----cccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655443 233444 443 55678999999999999999999988888887777666665544
No 416
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=34.48 E-value=2.8e+02 Score=23.24 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~ 178 (200)
||+-+++ |-|..++|.++..+-. +.+--.+.+.++..|.++...|...-+-|-|.....|..-.......
T Consensus 94 Dpe~Lme--vle~~E~IS~~~De~~--------l~~lk~q~q~ri~q~~~qlge~~esk~~~~Al~~i~rlrY~~~~~k~ 163 (168)
T KOG3192|consen 94 DPEFLME--VLEYHEAISEMDDEED--------LKQLKSQNQERIAQCKQQLGEAFESKKYDEALKKILRLRYWYELRKN 163 (168)
T ss_pred CHHHHHH--HHHHHHHHHhccCcHH--------HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 8886655 5577777777766544 33334556778889999999999999999998888887766655544
Q ss_pred HH
Q 029028 179 LK 180 (200)
Q Consensus 179 lq 180 (200)
+.
T Consensus 164 v~ 165 (168)
T KOG3192|consen 164 VH 165 (168)
T ss_pred Hh
Confidence 43
No 417
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=34.45 E-value=5.8e+02 Score=26.99 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCHHHH
Q 029028 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ---LALQKGEEDLA 162 (200)
Q Consensus 97 ~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~---~AL~~G~EDLA 162 (200)
.||--+-++-.||.++..............+....++.++++.+-+++....++. .+|.+-.+|+-
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence 3444444455555555554444444444444444444444444444444444432 35555555443
No 418
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=34.43 E-value=2.4e+02 Score=25.54 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQV 125 (200)
Q Consensus 110 eme~~l~kar~~lA~v 125 (200)
|+++++...+..+-..
T Consensus 3 el~~~~~~~~~~~r~l 18 (378)
T TIGR01554 3 ELKEQREEIVAEIRSL 18 (378)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 419
>PRK10869 recombination and repair protein; Provisional
Probab=34.43 E-value=4.4e+02 Score=25.60 Aligned_cols=42 Identities=7% Similarity=-0.064 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
+.+++.=+.+.++++.+.+........+++++-++-++++++
T Consensus 157 ~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 157 QEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666666665555555555555544443
No 420
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=34.28 E-value=3.5e+02 Score=25.37 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~ 187 (200)
+-.+......+...+....-+..+++.+++++..++.+-+..+..-...=.|.+|....- -.+|.........-++.=+
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L-~~eyQatf~eq~~ml~kRQ 200 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQEL-NDEYQATFVEQHSMLDKRQ 200 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHHhhcccccchhhhHHHH
Q ss_pred HHHHHHHhhhhc
Q 029028 188 NVVNNLVSNTRV 199 (200)
Q Consensus 188 ~~ve~Lk~~l~~ 199 (200)
..+.+|++.+++
T Consensus 201 ~yI~~LEsKVqD 212 (401)
T PF06785_consen 201 AYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHH
No 421
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=34.24 E-value=2.5e+02 Score=22.60 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i 143 (200)
+.+..+...+..+.+.+..+.+.-.....++..+...+
T Consensus 19 ~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a 56 (135)
T TIGR03495 19 QRLRNARADLERANRVLKAQQAELASKANQLIVLLALA 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455555566666655555555555555555554433
No 422
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=33.99 E-value=4.3e+02 Score=25.28 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQK 130 (200)
Q Consensus 98 EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k 130 (200)
-+-...|+..+..+++++.+--+-+++...+++
T Consensus 273 k~~q~~Leesye~Lke~~krdy~fi~etLQEER 305 (455)
T KOG3850|consen 273 KETQALLEESYERLKEQIKRDYKFIAETLQEER 305 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888877777777666554
No 423
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.95 E-value=4.5e+02 Score=25.55 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i 143 (200)
-+++.|.++++++......+.........-..++.++...-
T Consensus 105 ~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y 145 (560)
T PF06160_consen 105 EIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKY 145 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444444444444333
No 424
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.93 E-value=5.1e+02 Score=26.13 Aligned_cols=107 Identities=15% Similarity=0.279 Sum_probs=84.0
Q ss_pred HHHHHHHHH-------HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 81 RLARVVKSY-------ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 81 Rl~~lvra~-------in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.|.++++++ +..+=++.|+-..|+-..+-.|+..+...+...|.--.....+..+-.++..+.++++++...|
T Consensus 623 tlrtvlkankqtaevaltnlksKYEnEK~mvtetm~KlRnELk~Lkedaatfsslramf~~R~ee~~tq~de~~~ql~aa 702 (772)
T KOG0999|consen 623 TLRTVLKANKQTAEVALTNLKSKYENEKAMVTETMDKLRNELKALKEDAATFSSLRAMFAARCEEYVTQLDELQRQLAAA 702 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh
Confidence 355556654 3455678888889999999999999999999999999999999998999999999998887665
Q ss_pred Hhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 154 LQK--GEEDLAREALKRRKSYADNANALKAQLDQQK 187 (200)
Q Consensus 154 L~~--G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~ 187 (200)
=.. -=..|-|-|++.|..+-..++.++-..+.+-
T Consensus 703 edekKtln~llrmaiqqklaltqrle~~e~d~~~~~ 738 (772)
T KOG0999|consen 703 EDEKKTLNQLLRMAIQQKLALTQRLEELELDHEQQV 738 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 221 1235778899999999988888887776643
No 425
>PRK02119 hypothetical protein; Provisional
Probab=33.75 E-value=1.2e+02 Score=21.64 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 176 ANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 176 a~~lq~qld~~~~~ve~L 193 (200)
++.|...+.++..+++.|
T Consensus 25 ie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 25 LEELNQALIEQQFVIDKM 42 (73)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 426
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.66 E-value=42 Score=27.30 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATA-----QVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 108 IReme~~l~kar~~lA-----~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
.++++.++.+.++++. +--|..-+++|+++.+++++++..+.
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 34566677777777777777765544
No 427
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.53 E-value=1.5e+02 Score=20.52 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 029028 181 AQLDQQKNVVNNL 193 (200)
Q Consensus 181 ~qld~~~~~ve~L 193 (200)
....+....+++.
T Consensus 38 ~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 38 EEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3333333333333
No 428
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.48 E-value=5.9e+02 Score=26.78 Aligned_cols=11 Identities=27% Similarity=0.148 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 029028 102 KILEQAVLEMN 112 (200)
Q Consensus 102 ~mLdQ~IReme 112 (200)
.+.+|.-|+-+
T Consensus 335 ~leeqqqrere 345 (1118)
T KOG1029|consen 335 ALEEQQQRERE 345 (1118)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 429
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=33.38 E-value=4.9e+02 Score=26.33 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----H-------------HHHHHHHHHHHHHHHHHHHH
Q 029028 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE----E-------------DLAREALKRRKSYADNANAL 179 (200)
Q Consensus 117 kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~----E-------------DLAr~AL~rk~~~e~~a~~l 179 (200)
-.|..+-.+...+..++.++.++++++.+....|..|-++.. + ++|| .|.++.+|.+.+=.|
T Consensus 340 vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaR-VLMeRNqYKErLMEL 418 (832)
T KOG2077|consen 340 VLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMAR-VLMERNQYKERLMEL 418 (832)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHH-HHHHHhHHHHHHHHH
Confidence 345566666677778899999999999999988888844332 2 3444 455556677776666
Q ss_pred HHHH
Q 029028 180 KAQL 183 (200)
Q Consensus 180 q~ql 183 (200)
+..+
T Consensus 419 qEav 422 (832)
T KOG2077|consen 419 QEAV 422 (832)
T ss_pred HHHH
Confidence 6554
No 430
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.16 E-value=3.3e+02 Score=23.69 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=40.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029028 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 168 (200)
Q Consensus 89 ~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~r 168 (200)
.|-.-++.+++=++.|++|..+|+.-+ .+-..-.-.-+++..+++.++..|...+..=.. ....
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~----~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~------------~~~~ 82 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELL----QERMAHVEELRQINQDINTLENIIKQAESERNK------------RQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 333334444455555555555544333 222233333444555555555555433332221 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029028 169 RKSYADNANALKAQLDQQKNV 189 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ 189 (200)
...+.+++..++.+++.....
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455777777777776655
No 431
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.15 E-value=3.2e+02 Score=28.11 Aligned_cols=7 Identities=57% Similarity=1.080 Sum_probs=2.7
Q ss_pred cCCHHHH
Q 029028 156 KGEEDLA 162 (200)
Q Consensus 156 ~G~EDLA 162 (200)
.|.|+||
T Consensus 69 ~~~e~l~ 75 (793)
T KOG2180|consen 69 RGKENLA 75 (793)
T ss_pred hhhhhHH
Confidence 3333333
No 432
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.14 E-value=3.7e+02 Score=24.29 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
+++.+.+.++.+.+.+..+..+......++.+|++...+...++..+...
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 275 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEET 275 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666666666666666666666666665544
No 433
>PLN03188 kinesin-12 family protein; Provisional
Probab=33.12 E-value=6.9e+02 Score=27.44 Aligned_cols=99 Identities=9% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQ-------------ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA--REA 165 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~-------------~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLA--r~A 165 (200)
++-+...|.|.+..-.+|-. .+..+.+++.+-.+.+.+-.+..+.--...-.|+++.-|=|. |+|
T Consensus 1130 hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~ea 1209 (1320)
T PLN03188 1130 HRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEA 1209 (1320)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 029028 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 166 L~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~~ 199 (200)
-+.....++++...+..-+.+.+++++||++...
T Consensus 1210 eea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~ 1243 (1320)
T PLN03188 1210 EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHEN 1243 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=33.09 E-value=4.1e+02 Score=24.80 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=69.7
Q ss_pred cccCcHH--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 029028 73 NTRMNLF--DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY--- 147 (200)
Q Consensus 73 ~~~Msif--~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we--- 147 (200)
+..+.|| .|+..-++.. ....++.+.+.+..+..+-.+++.+......+..++...++.++..+
T Consensus 355 ~l~~plf~gG~~~a~~~~A-----------~a~~~~a~~~y~~t~~~a~~eV~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 423 (478)
T PRK11459 355 GLTLPIFDSGRLNANLDIA-----------KAQSNLSIASYNKAVVDAVNDVARAASQVETLAEKNQHQQQIERDALRVV 423 (478)
T ss_pred ceeeecccccHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688 5555433322 34455666666777777777777777777777777777666666664
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (200)
Q Consensus 148 ~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve 191 (200)
+-++.-.+.|-.+.-.-.-.+...+..+....+.+...+...|.
T Consensus 424 ~la~~ry~~G~~~~l~vl~aq~~~l~~~~~~~~~~~~~~~~~v~ 467 (478)
T PRK11459 424 GLAQARFNAGIIAGSRVSEAKIPALRERANGLLLQGQWLDASIQ 467 (478)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666688888877766666666666777666666666665554
No 435
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=33.06 E-value=3.4e+02 Score=23.92 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=4.6
Q ss_pred HHHHhhccCCH
Q 029028 90 ANAILSSFEDP 100 (200)
Q Consensus 90 in~~ldk~EDP 100 (200)
.+.+++..+++
T Consensus 57 ad~l~~~~~~~ 67 (286)
T PF11727_consen 57 ADYLVKETEDF 67 (286)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 436
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=32.99 E-value=1.4e+02 Score=19.32 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQ 129 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~ 129 (200)
+++=+..+.||..++.+++..+..++.+.
T Consensus 6 e~~KqEIL~EvrkEl~K~K~EIIeA~~~e 34 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVKEEIIEAIRQE 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788899999999999998886544
No 437
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=32.97 E-value=3.2e+02 Score=23.45 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 158 EEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 158 ~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
+|++-+.+-....+|...+...+.+-.+
T Consensus 167 Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e 194 (234)
T cd07652 167 EDELLRKVQAADQDYASKVNAAQALRQE 194 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555666666666665554444
No 438
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=32.79 E-value=2.2e+02 Score=21.56 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=30.6
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
+|...--.+..++.|.+-++.+.+....++.....-....+.-.+++.+.++..+..+.+++...
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~ 91 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDP 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 33333334445555554444444444444433333333333333444555566666666666543
No 439
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=32.76 E-value=2.9e+02 Score=24.03 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k 135 (200)
-|..+.+.-.+.++.+-.++.+|-......+..++++|.....+--.-+...++|++-
T Consensus 76 ~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Lekl 133 (219)
T PF06730_consen 76 CLAKVQDYRQAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLKQLEKL 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888889999999999999999999999999999998888777777777766553
No 440
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.56 E-value=4.2e+02 Score=24.79 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFE---DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~E---DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~ 138 (200)
+-+++....+-.++...-..+ --+..|...+.+|+..+...++.+..+..+-.-|..+..+
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444444433332222 1223333333333333333344444444444444444443
No 441
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.49 E-value=1.8e+02 Score=20.39 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~ 140 (200)
.++++..++.+.++.+.....+..+|+.++..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666666666666555555555555555443
No 442
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.35 E-value=4.6e+02 Score=25.19 Aligned_cols=121 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPE-KILEQAVL----EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~-~mLdQ~IR----eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
...++.+.++..-.+.+++.+.-. ..+++.+. +...++.+.+..+.... ..+|+.+++...+.+......+..
T Consensus 274 ~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~--~~~L~~eL~~~~~~~~~~l~~~l~ 351 (582)
T PF09731_consen 274 EEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKY--EEELRQELKRQEEAHEEHLKNELR 351 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 029028 153 ALQKGE-----EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRVS 200 (200)
Q Consensus 153 AL~~G~-----EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~~~ 200 (200)
....-- ..+......++..+...+..+...++.++..+......++.+
T Consensus 352 ~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~ 404 (582)
T PF09731_consen 352 EQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDEN 404 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.08 E-value=2.1e+02 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
|..-|.++++.+..+...+..+......++.++..+...+.+++++++.
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4455667777777777777666666666677777777777777777654
No 444
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=31.90 E-value=2.4e+02 Score=21.75 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=11.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccC
Q 029028 76 MNLFDRLARVVKSYANAILSSFE 98 (200)
Q Consensus 76 Msif~Rl~~lvra~in~~ldk~E 98 (200)
.|.|.+...=..-.+++++.+=+
T Consensus 14 LGa~a~~~ek~~k~~~~LVkkGe 36 (118)
T TIGR01837 14 IGALARVQEEGSKFFNRLVKEGE 36 (118)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555545555555555444
No 445
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=31.83 E-value=2.8e+02 Score=22.52 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFED-PEKILEQAVLEMNDDLVKMRQA 121 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~ED-P~~mLdQ~IReme~~l~kar~~ 121 (200)
+|..++.-+.+..+.+.+.+.+ .+++|++.+....++..+.-++
T Consensus 47 ~l~~fk~elE~~~~~w~~dak~kAEkiL~aal~~ske~m~~~l~e 91 (144)
T PF11657_consen 47 QLDQFKEELEEIASRWGEDAKEKAEKILNAALAASKEAMNKILQE 91 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655443 3567776666555554444333
No 446
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.78 E-value=2.5e+02 Score=21.86 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=1.8
Q ss_pred CHHHHH
Q 029028 99 DPEKIL 104 (200)
Q Consensus 99 DP~~mL 104 (200)
|+++++
T Consensus 23 d~~~v~ 28 (158)
T PF03938_consen 23 DVDKVF 28 (158)
T ss_dssp -HHHHH
T ss_pred eHHHHH
Confidence 333333
No 447
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=31.67 E-value=2.5e+02 Score=21.81 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 029028 102 KILEQAVLEMND-----DLVKMRQATAQVLA------SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (200)
Q Consensus 102 ~mLdQ~IReme~-----~l~kar~~lA~v~A------~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr 163 (200)
..|++.|.-++. .+.-...+|..+.+ .....+.++.+.+.++.+++.-...|...|+.|--.
T Consensus 27 ~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~ 99 (115)
T PF06476_consen 27 QAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIA 99 (115)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 445555544432 24444445555543 356778889999999999999999999999986543
No 448
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=31.59 E-value=5.9e+02 Score=26.21 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
.+...+..++....+....++...-.-..+..++.+.+..+..++.+..
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444555555555555555555544444
No 449
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.59 E-value=1.9e+02 Score=20.59 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.....+..+...++.........+..|-..+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555556666666666666666555544
No 450
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.47 E-value=4.9e+02 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029028 129 QKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 129 ~k~le~k~~~~~~~i~~we~r 149 (200)
..++.++|..--..+-.+.+.
T Consensus 313 l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 313 IKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 333444444333333333333
No 451
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=31.03 E-value=2.6e+02 Score=21.82 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 86 VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 86 vra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
+-..+|.-+..+-.=.+-|+...+++.....+.++....-......+...++++ ...+.|-..
T Consensus 34 l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi-GDveNWa~~ 96 (121)
T PF06320_consen 34 LVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEI-GDVENWAEM 96 (121)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHH
Confidence 333333333333333577777777777777777777777666666666666655 444445433
No 452
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=30.99 E-value=2.5e+02 Score=22.67 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC--HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 129 QKRLENKCKAAE-QASEDWYRKAQLALQKGE--EDL-AREALKRRKSYADNANALKAQLDQQ 186 (200)
Q Consensus 129 ~k~le~k~~~~~-~~i~~we~rA~~AL~~G~--EDL-Ar~AL~rk~~~e~~a~~lq~qld~~ 186 (200)
..+|+.++..+. .+..+.-.....|-..|| |+- ...|-.+...++.++..|+..++.+
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A 71 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENL 71 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666666664 345555556667778887 543 2344455666777777777766643
No 453
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.89 E-value=1.9e+02 Score=21.33 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~ 141 (200)
.-+..+|.+++.-++...+..+.|+.++.+++.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776666666666665543
No 454
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=30.62 E-value=3.6e+02 Score=23.44 Aligned_cols=65 Identities=8% Similarity=0.085 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 121 ~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
++-.+..++..+=+.+..++..+.+...+-..-...|+.|-...+..+..+++..+...+...+.
T Consensus 120 SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~ 184 (234)
T cd07665 120 AVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFER 184 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555556666666655554433222233566666666666666666666655554444
No 455
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=30.61 E-value=90 Score=30.78 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred cccCccceEEeeccccccCCCCcccccCCCcccccCcHHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHH
Q 029028 41 FFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVK 117 (200)
Q Consensus 41 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Msif~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~l~k 117 (200)
+||++ +.+++....+...+..=.+-+-+...+.+.||+.+|.+||=+ ..+..-|++++.+|.+
T Consensus 337 g~g~~--------------~~~~~~~~~~~~~~~r~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r 402 (557)
T PF01763_consen 337 GFGGA--------------PGGAGSGGEPVQQAFRDSVSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSR 402 (557)
T ss_pred CCCCC--------------CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 029028 118 MRQA 121 (200)
Q Consensus 118 ar~~ 121 (200)
.+..
T Consensus 403 ~~~~ 406 (557)
T PF01763_consen 403 YREE 406 (557)
T ss_pred HHHh
No 456
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=30.32 E-value=7.6e+02 Score=27.06 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=5.8
Q ss_pred CCCCCCCCCC
Q 029028 12 TMPMTPAPSS 21 (200)
Q Consensus 12 ~~~~~~~~~~ 21 (200)
.||.-|..||
T Consensus 353 ~pP~vPevss 362 (1317)
T KOG0612|consen 353 VPPVVPEVSS 362 (1317)
T ss_pred CCCCCCcCCC
Confidence 4666666644
No 457
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.02 E-value=3.7e+02 Score=23.33 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=40.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 029028 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQ---------ATAQVLASQKRLENKCKAAEQAS 143 (200)
Q Consensus 88 a~in~~ldk~EDP~~mLdQ~IReme~~l~kar~---------~lA~v~A~~k~le~k~~~~~~~i 143 (200)
..+|..-|.+|+-+.-||..|...++++.+.|- ..-+|.-+++..|.+...+..+.
T Consensus 22 ~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~Qs 86 (218)
T KOG1655|consen 22 DSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQS 86 (218)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777888888899999999999999998764 33445555566666655555443
No 458
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.99 E-value=5.5e+02 Score=25.45 Aligned_cols=53 Identities=8% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
..|-+.+..+..+|.+.+..+...+ ...-.+++.+-++|.++..++..+-..|
T Consensus 142 ~~L~~~~n~~~~~L~~~~~~~~~~i---~~~V~~iN~ll~~Ia~LN~qI~~~~~~g 194 (613)
T PRK08471 142 ETLTNNIKDTRERLDTLQKKVNEEL---KVTVDEINSLGKQIAEINKQIKEVEAGK 194 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 3344556666666666666554443 3334566777777777777776665444
No 459
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=29.94 E-value=1.7e+02 Score=29.95 Aligned_cols=27 Identities=30% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 125 VLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
..++..+++++++.++.++++.+.+..
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~ 835 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLS 835 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456666777777777777777766543
No 460
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.71 E-value=6e+02 Score=25.65 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (200)
--+.-+.+-|-+++.++.+.|..++.+..+..+++....+....
T Consensus 100 akE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~ 143 (772)
T KOG0999|consen 100 AKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKES 143 (772)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566778899999999999999999999999988876665443
No 461
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.64 E-value=4.6e+02 Score=24.30 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=11.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 156 KGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 156 ~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
|.+--..--+|.+.+-+-.-+++++.
T Consensus 101 KrNLT~SIT~LkrL~MLv~a~~qL~~ 126 (383)
T PF04100_consen 101 KRNLTQSITTLKRLQMLVTAVEQLKE 126 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 462
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=29.61 E-value=4.1e+02 Score=23.78 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 029028 175 NANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 175 ~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
+++.++++++.++..++.++..
T Consensus 159 ~~~~~~~~l~~~~~~l~~~~~~ 180 (370)
T PRK11578 159 QIGTIDAQIKRNQASLDTAKTN 180 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555454444443
No 463
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=29.52 E-value=5.3e+02 Score=25.00 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a 176 (200)
...+++...++...++++........-++ ++ ..+.+.-+.+..|+..|+-.-|-..+.+....-+.+
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~~~~~l~~L~-~L----~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l 141 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEENEQLLEVLE-QL----QEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDL 141 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444433333332 22 233334456678888888888888888777766553
No 464
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=29.49 E-value=3.6e+02 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=12.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQ 124 (200)
Q Consensus 96 k~EDP~~mLdQ~IReme~~l~kar~~lA~ 124 (200)
.+++|+ +...+++++.++..++..+..
T Consensus 56 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (322)
T TIGR01730 56 RLDDDD--YQLALQAALAQLAAAEAQLEL 82 (322)
T ss_pred EECCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344554 233344555555555444433
No 465
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.47 E-value=2.2e+02 Score=26.34 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029028 131 RLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 131 ~le~k~~~~~~~i~~we~rA~~A 153 (200)
..++++++++.+++.++++...+
T Consensus 270 k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 270 KKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665554
No 466
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.42 E-value=2.7e+02 Score=21.55 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=6.3
Q ss_pred cccccccccc
Q 029028 33 VKKPLTTSFF 42 (200)
Q Consensus 33 ~~~~l~~~f~ 42 (200)
+..|++++.|
T Consensus 58 ~lvplg~~~y 67 (140)
T PRK03947 58 TLVPIGAGSF 67 (140)
T ss_pred EEEEcCCCcE
Confidence 3456777776
No 467
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=29.28 E-value=2.7e+02 Score=21.54 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~ 145 (200)
.+|++--..+.+.+.++......+.......+.++.+...++..
T Consensus 22 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~ 65 (147)
T TIGR01144 22 KAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQE 65 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333
No 468
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.02 E-value=7.6e+02 Score=26.63 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
.-.+=|.-.+++|++.+.+..+.++...-..|.+.-+.+++..++...+.
T Consensus 408 ke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 408 KEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR 457 (1195)
T ss_pred HHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455777888888888888888888888888888888877777665544
No 469
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.94 E-value=3.5e+02 Score=22.74 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 116 ~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
..+...+....+...+++.++.+++..+.+++.++...
T Consensus 113 k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~ 150 (190)
T PF05266_consen 113 KKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKL 150 (190)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555777777777777777777765443
No 470
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.85 E-value=3e+02 Score=21.90 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.+|++-=..+.+++.++...-..+.......+.++.+++.+..+.-..|+.
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~ 85 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEARE 85 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555554444444433
No 471
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=28.84 E-value=1.3e+02 Score=23.61 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHhcCCHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED--WYR-------KAQLALQKGEEDLARE 164 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~--we~-------rA~~AL~~G~EDLAr~ 164 (200)
|++.|-..-.++...++.+...+-+-..|.-+-..+++.... .+. .+..-...|.|.||+-
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~l 82 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARL 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHH
Confidence 444444555556666666666666666655555555555444 222 2222255677888763
No 472
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.84 E-value=2e+02 Score=19.79 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i 143 (200)
.|++..+.+....+..+..+...+...+..+++.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566555555555555555555444444444
No 473
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=28.83 E-value=5.9e+02 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~ 137 (200)
.+++....+..+...++....++..|+..|.
T Consensus 379 ~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 474
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.63 E-value=4.1e+02 Score=23.45 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLE----------------NKCKAAE 140 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~-~mLdQ~IReme~~l~kar~~lA~v~A~~k~le----------------~k~~~~~ 140 (200)
.++||.......-..+-..+-||- .+++--|.++...-.++....-+.=+.+.++. .+..+++
T Consensus 89 a~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr 168 (248)
T cd07619 89 TEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALR 168 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHH
Confidence 567777777777777777777885 67776666665554444444444434444442 1335666
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 141 QASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 141 ~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
.++++.+++-..|-..--+++--..-......+--++=+++|++-.+...+-|.
T Consensus 169 ~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe 222 (248)
T cd07619 169 EEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQ 222 (248)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666666532222333222222222222233334455555544444443
No 475
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.51 E-value=3.5e+02 Score=22.56 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 029028 82 LARVVKSYANA 92 (200)
Q Consensus 82 l~~lvra~in~ 92 (200)
+++++.+-+++
T Consensus 32 VKdvlq~LvDD 42 (188)
T PF03962_consen 32 VKDVLQSLVDD 42 (188)
T ss_pred HHHHHHHHhcc
Confidence 45555555543
No 476
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.46 E-value=4.7e+02 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLA 127 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A 127 (200)
.-|-+.+.+.++........+.....
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrq 93 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQ 93 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444444444433333
No 477
>COG0704 PhoU Phosphate uptake regulator [Inorganic ion transport and metabolism]
Probab=28.41 E-value=1.8e+02 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=39.5
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 75 RMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ 129 (200)
Q Consensus 75 ~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~ 129 (200)
..+.|.|+..++..-++++++.+.+...-+...|.+.++++.+.=..+-+.+...
T Consensus 124 ~~~~l~~m~~~~~~Ml~d~~~a~~~~d~~~a~~i~~~Dd~vD~ly~~~~r~l~~~ 178 (240)
T COG0704 124 ILEELRRMGEIALSMLKDALDALANRDPELARDIIERDDEVDRLYFLLLRQLLTY 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888887777777777777777766655554444433
No 478
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=28.29 E-value=1.9e+02 Score=22.24 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
..-.|..|.+-.+.|.+....+..+...+.++++.++-++.+=.+++
T Consensus 45 V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe 91 (116)
T PF05064_consen 45 VNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELE 91 (116)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888888888888888888888887776655444
No 479
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.20 E-value=6.3e+02 Score=25.44 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~ 158 (200)
..|-+.++.+...|.+.+..+-..+. ..-.+++.+-++|.++.+++..+-..|.
T Consensus 137 ~~La~~fn~~~~~L~~l~~~vn~qI~---~~V~~IN~l~~qIA~LN~qI~~~~~~G~ 190 (676)
T PRK05683 137 QGLSKRFNSLSSQLNQQNSNINSQLS---AMTDQVNNLTTSIASYNKQIAQASASGA 190 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34445666666666666666555443 3345677777788888888776644453
No 480
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=28.02 E-value=1.7e+02 Score=20.22 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 125 VLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
+.+.-..||+++.+.+.++++.+.++..+
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 481
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=28.00 E-value=7.3e+02 Score=26.12 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=15.4
Q ss_pred ccCc--HHHHHHHHHHHHHHHHhhc
Q 029028 74 TRMN--LFDRLARVVKSYANAILSS 96 (200)
Q Consensus 74 ~~Ms--if~Rl~~lvra~in~~ldk 96 (200)
++|+ -|.|..=+-.|.|..++..
T Consensus 140 lgl~~~~F~~~v~l~QG~f~~fl~a 164 (1047)
T PRK10246 140 TGLDYGRFTRSMLLSQGQFAAFLNA 164 (1047)
T ss_pred hCCCHHHhhhheeeccccHHHHHhC
Confidence 5666 4555556667888888764
No 482
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=27.86 E-value=2e+02 Score=19.64 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 150 AQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 150 A~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
...|...||-.-=|..+....+..++...+...++.++.+|.+|+.
T Consensus 7 iq~AiasGDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 7 IQQAIASGDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
No 483
>PF15469 Sec5: Exocyst complex component Sec5
Probab=27.79 E-value=3.2e+02 Score=21.96 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 80 DRLARVVKSYANAILSSFEDPEKILEQA------------VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 80 ~Rl~~lvra~in~~ldk~EDP~~mLdQ~------------IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
+.+..+|..+++..++..+-=..+.++. +.++++.+.++......+...-..-..+...+...+.=++
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Q ss_pred H---------HHHHHHhcCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhh
Q 029028 148 R---------KAQLALQKGEEDLAREALKRRKSYADNA----NALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 148 ~---------rA~~AL~~G~EDLAr~AL~rk~~~e~~a----~~lq~qld~~~~~ve~Lk~~l 197 (200)
+ +...++++|+-+.|-.--.+.+.+-+.. ..++.-+++.+..++.++..|
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l 144 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKL 144 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
No 484
>COG5570 Uncharacterized small protein [Function unknown]
Probab=27.71 E-value=2.1e+02 Score=19.70 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASEDWYRKAQLALQKG--EEDLAREALKRRKSYADNANALKAQ 182 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA~~AL~~G--~EDLAr~AL~rk~~~e~~a~~lq~q 182 (200)
++..+.+++..-..++.....|+..- |+..-++.-.||..+.++++.+++|
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
No 485
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=27.70 E-value=5.9e+02 Score=24.92 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcc---CCHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 82 LARVVKSYANAILSSF---EDPE---KILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 82 l~~lvra~in~~ldk~---EDP~---~mLdQ~IReme~~l~kar~~lA~v~-A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
+.+++.......-+.+ .++. ..++.....+++.+......+..+= .-....++.......+++.+++|+..|.
T Consensus 400 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~~~e~~~~~~~~ql~~Le~k~~~a~ 479 (542)
T PF10079_consen 400 VEDVFEDGEELLKERWLEEQDPSEIEDDFEEEKEQLEAQFEPLKEKAAKIDPTLEGLVEKNESKILKQLDYLEKKLLKAE 479 (542)
T ss_pred HHHHhhccHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 029028 155 QKGEEDLAREALKRRKSY 172 (200)
Q Consensus 155 ~~G~EDLAr~AL~rk~~~ 172 (200)
+...++.-+..-.=+..+
T Consensus 480 ~rk~~~~l~q~~~l~~~L 497 (542)
T PF10079_consen 480 KRKHETALRQLDRLENSL 497 (542)
T ss_pred HHHhHHHHHHHHHHHhhc
No 486
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.67 E-value=3.1e+02 Score=23.49 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (200)
Q Consensus 81 Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~ 137 (200)
+-....+..+.+++++..+.+.+|+ .+++|.+.+..+-....+.+.++.+.+
T Consensus 142 ~~l~~~~~rl~~ll~ka~~~~d~l~-----ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 142 KNLEAEEERLLELLEKAKTVEDLLE-----IERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhc
No 487
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=27.65 E-value=2.7e+02 Score=28.92 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 029028 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCK-AAEQASEDWYRKAQ 151 (200)
Q Consensus 73 ~~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~-~~~~~i~~we~rA~ 151 (200)
++.|.|+.++.+..++++-..+ |-..-.-|.++|+-++++.+...|-..-++.......+. +.+......-+-.+
T Consensus 230 ~i~~~i~~~l~~~s~s~vi~~l----~~v~~~~~el~~~~~ave~m~~~L~~~~s~~~~~~~~lr~~~~~sL~~llq~~~ 305 (865)
T KOG4331|consen 230 EIGMLIGGCLHDDSESNVIPVL----DYVLSAAQELREMSEAVENMNDTLDSLGSQLNDGASKLRERVNASLKVLLQVVL 305 (865)
T ss_pred cccchhcchhhhccccchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHhHH
No 488
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.64 E-value=8e+02 Score=26.47 Aligned_cols=111 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhc
Q 029028 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ-----------ASEDWYRKAQLALQK 156 (200)
Q Consensus 88 a~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~-----------~i~~we~rA~~AL~~ 156 (200)
++.+.-+..++--..-.+-...+....+.+.+.++..+-.....++.++.+... ++++|+.-=..|...
T Consensus 299 ~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~ 378 (1141)
T KOG0018|consen 299 SHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKE 378 (1141)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhh
Q ss_pred CCHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 157 GEEDLA-------------REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 157 G~EDLA-------------r~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
+.++|. ...+.+..++++....+..++.+......+|...+.
T Consensus 379 ~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~ 433 (1141)
T KOG0018|consen 379 ALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKIT 433 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=27.63 E-value=4.7e+02 Score=23.74 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL---ALQKGEEDLAREALKRRKSYADN 175 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~---AL~~G~EDLAr~AL~rk~~~e~~ 175 (200)
+|..-+.|...+|++++.+....-....+.-.---.+++.-...++...++... +++.-.|+---...+....+++.
T Consensus 20 ~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Ledd 99 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDD 99 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029028 176 ANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 176 a~~lq~qld~~~~~ve~Lk~ 195 (200)
+....++-+++.+.|-+|..
T Consensus 100 lsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 100 LSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 490
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=27.62 E-value=4.1e+02 Score=23.12 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
...|.+...+++.-+.+++....+.......- .+-...+...+-|..--..|...|..++....-.-....+.-...+.
T Consensus 80 ~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e-~e~~~~~a~~eGy~eG~~~g~~e~~~e~~~~~~~l~~~~~~l~~~~~ 158 (281)
T PRK06669 80 KEELLKKTDEASSIIEKLQMQIEREQEEWEEE-LERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIEKLIKKRE 158 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 029028 181 AQLDQQKNVVNNL 193 (200)
Q Consensus 181 ~qld~~~~~ve~L 193 (200)
..++..+..+-.|
T Consensus 159 ~~l~~~e~elv~L 171 (281)
T PRK06669 159 EILESSEEEIVEL 171 (281)
T ss_pred HHHHHHHHHHHHH
No 491
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=27.54 E-value=4.9e+02 Score=23.91 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
|..||..+ ..+|.-...+-+--.-|++.+.+|..++.+-+..|..+... +...+..++..++.++.|..
T Consensus 317 lv~RL~tL--~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 317 LVERLKTL--KSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
No 492
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.44 E-value=3.8e+02 Score=27.15 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCC
Q 029028 85 VVKSYANAILSSFEDPEKILE---QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA---LQKGE 158 (200)
Q Consensus 85 lvra~in~~ldk~EDP~~mLd---Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A---L~~G~ 158 (200)
.+++.++++...+.||..+.. +.---+.+++..+...+-....+...-..+..+...+++++....--= ...-.
T Consensus 72 ~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~ 151 (660)
T KOG4302|consen 72 VIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLI 151 (660)
T ss_pred HHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 159 EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
-|.=.--+.+..++...+..|+.+...=-+.|..++..|.
T Consensus 152 ~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~ 191 (660)
T KOG4302|consen 152 ADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIK 191 (660)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.39 E-value=3.9e+02 Score=22.69 Aligned_cols=83 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA-EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~-~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~l 179 (200)
...|+..+..++..+.+.++.+-.+-..+|..+.....- ...-.+|.+ .+.+-.+++.....+
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~----------------~v~kn~eie~a~~~L 201 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKE----------------LVSKNLEIEVACEEL 201 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 029028 180 KAQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 180 q~qld~~~~~ve~Lk~~l~~ 199 (200)
++++.+++....+++.+...
T Consensus 202 e~ei~~l~~~~~~~~~~~~~ 221 (221)
T PF05700_consen 202 EQEIEQLKRKAAELKENQQQ 221 (221)
T ss_pred HHHHHHHHHHHHHHhccccC
No 494
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=27.39 E-value=2.3e+02 Score=24.92 Aligned_cols=67 Identities=9% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 87 KSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 87 ra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.+.++.+++.+|-....=|..|..++.+|..+...|+.+.-+.++--+.+++++...-.-+.-.+.|
T Consensus 69 q~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvsSEelIKyA 135 (272)
T KOG4552|consen 69 QQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVSSEELIKYA 135 (272)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
No 495
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=27.35 E-value=5.3e+02 Score=24.26 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 029028 87 KSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (200)
Q Consensus 87 ra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL 166 (200)
......+-+.++-+..-.++.+..++..+.+....+.........+..++..++..+.++..+=..--.-.+-+---..+
T Consensus 66 ~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyLlrlA 145 (390)
T PRK10920 66 TATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFLVKLA 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
.++..++..+..--..+......+..+
T Consensus 146 ~qkL~l~~Dv~tA~alLksAD~rLa~~ 172 (390)
T PRK10920 146 GRKLWSDQDVTTAAALLKSADASLADM 172 (390)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhc
No 496
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=27.27 E-value=3.5e+02 Score=22.15 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 78 LFDRLARVVKSYANAILSSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~EDP-~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
++++|+.-+.+.++.|-+.+.+- +++|+..+---++...+.-+.-++..++.-+- .+.....++...-+.++.+
T Consensus 47 mL~~FkeelE~iasrW~~dak~KAEkiLnaaLaaSKeam~~~m~e~~~~~~~~i~~--~i~~~~~e~~~~~~~tr~~ 121 (144)
T PRK13895 47 MLDQFKEELESIASRWGDDAKEKAERILNAALAASKEAMAKGMQEGAKAAAEAVRR--EISASLAELAAPVREARRV 121 (144)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
No 497
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=27.16 E-value=5.2e+02 Score=24.09 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred hccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029028 95 SSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (200)
Q Consensus 95 dk~EDP-~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e 173 (200)
+-+++| ..-|.+.+-.....+.+....++..-..-..++.++.+++..+..--.+........ ...+..+.+.++
T Consensus 280 ~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~----~~~l~~~~~~L~ 355 (458)
T COG3206 280 EVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNE----LALLEQQEAALE 355 (458)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhH----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 029028 174 DNANALKAQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~Lk~~l~~ 199 (200)
.+...++.++........++..--|+
T Consensus 356 ~~~~~l~~~~~~~~~~~~~l~~L~Re 381 (458)
T COG3206 356 KELAQLKGRLSKLPKLQVQLRELERE 381 (458)
T ss_pred HHHHHHHHHHhhchHhhhHHHHHHHH
No 498
>PLN02939 transferase, transferring glycosyl groups
Probab=27.12 E-value=7.8e+02 Score=26.17 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 029028 89 YANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA 165 (200)
Q Consensus 89 ~in~~ldk~EDP~---~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~A 165 (200)
++..++|++.+-. .++=+.-.|+++.+++.+.++..+...+-+.+ .+.-.+++++..+++-+..-.. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~ 374 (977)
T PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSY-KVELLQQKLKLLEERLQASDHE--------I 374 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHH-HHHHHHHHHHHHHHHHHhhHHH--------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 166 LKRRKSYADNANALKAQLDQQKNVVNN 192 (200)
Q Consensus 166 L~rk~~~e~~a~~lq~qld~~~~~ve~ 192 (200)
.....-|++..+.++..+..+...-++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 375 HSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
No 499
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=27.06 E-value=5.7e+02 Score=24.56 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDPE--KILEQAVLEMNDDLV----KMRQATAQVLASQKRL-ENKCK-AAEQASEDWYRKA 150 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP~--~mLdQ~IReme~~l~----kar~~lA~v~A~~k~l-e~k~~-~~~~~i~~we~rA 150 (200)
+..+..-....+...|+....-. ..-.+++.++++.+. +.+............. +.++. +++.+.+.+..+.
T Consensus 267 l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l 346 (582)
T PF09731_consen 267 LAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHL 346 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 151 QLALQKGEEDLAREALKR-RKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 151 ~~AL~~G~EDLAr~AL~r-k~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..+|..-..++-++.... +...+.+.......++.+...+..|...+
T Consensus 347 ~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~ 394 (582)
T PF09731_consen 347 KNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEAL 394 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.02 E-value=2.2e+02 Score=19.80 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
++++-|.+++..+.=....+...-....+..+++..++.++..+.++..
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!