Query 029028
Match_columns 200
No_of_seqs 138 out of 797
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 97.6 0.0034 1.2E-07 56.6 17.0 115 79-194 350-470 (471)
2 4abm_A Charged multivesicular 97.6 0.0019 6.6E-08 46.3 12.2 75 118-193 4-78 (79)
3 2gd5_A Charged multivesicular 95.9 0.22 7.4E-06 40.0 13.2 68 129-197 23-94 (179)
4 1deq_A Fibrinogen (alpha chain 94.2 0.97 3.3E-05 40.9 13.3 69 94-162 101-169 (390)
5 3na7_A HP0958; flagellar bioge 94.1 2 7E-05 35.9 14.7 50 102-151 35-84 (256)
6 2jee_A YIIU; FTSZ, septum, coi 93.7 1.3 4.5E-05 31.7 11.4 67 86-156 11-77 (81)
7 3bas_A Myosin heavy chain, str 92.3 2.2 7.6E-05 30.5 12.4 46 104-149 12-57 (89)
8 2efr_A General control protein 92.2 3.6 0.00012 32.7 15.2 102 90-196 26-127 (155)
9 2fxo_A Myosin heavy chain, car 92.2 3 0.0001 31.7 13.9 90 104-193 11-102 (129)
10 3frt_A Charged multivesicular 90.7 6.5 0.00022 32.7 13.5 70 128-197 22-94 (218)
11 3ol1_A Vimentin; structural ge 89.7 5.1 0.00018 30.1 12.8 40 102-141 16-55 (119)
12 2dfs_A Myosin-5A; myosin-V, in 88.7 5.4 0.00018 40.3 13.1 22 167-188 1023-1044(1080)
13 3oja_B Anopheles plasmodium-re 88.6 11 0.00037 34.3 14.2 31 114-144 457-487 (597)
14 1m1j_B Fibrinogen beta chain; 88.1 9 0.00031 35.4 13.2 21 175-195 169-189 (464)
15 3mq7_A Bone marrow stromal ant 86.6 9.1 0.00031 29.2 12.1 31 167-197 71-101 (121)
16 2v4h_A NF-kappa-B essential mo 84.2 11 0.00039 28.3 9.9 16 167-182 90-105 (110)
17 3iox_A AGI/II, PA; alpha helix 83.9 15 0.0005 34.3 12.3 25 169-193 82-106 (497)
18 3oja_B Anopheles plasmodium-re 83.7 10 0.00035 34.4 11.3 20 108-127 458-477 (597)
19 3mq9_A Bone marrow stromal ant 82.6 25 0.00087 31.1 14.3 26 172-197 441-466 (471)
20 1i84_S Smooth muscle myosin he 82.4 12 0.00042 37.8 12.2 41 107-147 858-898 (1184)
21 3ghg_A Fibrinogen alpha chain; 82.3 8.1 0.00028 36.4 9.9 22 78-99 54-75 (562)
22 2v71_A Nuclear distribution pr 81.5 20 0.0007 29.2 15.1 66 87-152 16-81 (189)
23 1i84_S Smooth muscle myosin he 81.1 14 0.00049 37.3 12.1 34 117-150 861-894 (1184)
24 3q8t_A Beclin-1; autophagy, AT 80.7 14 0.00047 26.8 14.7 89 102-195 7-95 (96)
25 3fpp_A Macrolide-specific effl 80.3 11 0.00039 31.6 9.7 81 105-197 68-151 (341)
26 3ajw_A Flagellar FLIJ protein; 79.8 16 0.00056 27.1 11.5 48 105-152 11-58 (150)
27 2efr_A General control protein 79.0 22 0.00075 28.1 14.9 60 97-157 13-72 (155)
28 2zqm_A Prefoldin beta subunit 78.9 12 0.00042 26.9 8.3 86 108-198 8-108 (117)
29 2dfs_A Myosin-5A; myosin-V, in 78.2 36 0.0012 34.4 13.8 64 131-195 981-1044(1080)
30 3qne_A Seryl-tRNA synthetase, 77.8 19 0.00063 33.4 10.9 65 128-194 41-105 (485)
31 1zbt_A RF-1, peptide chain rel 77.1 12 0.00039 33.7 9.0 99 74-183 11-110 (371)
32 1m1j_B Fibrinogen beta chain; 76.0 49 0.0017 30.5 14.4 30 167-196 168-197 (464)
33 4dk0_A Putative MACA; alpha-ha 75.8 9.8 0.00033 32.4 8.0 31 168-198 123-153 (369)
34 2dq0_A Seryl-tRNA synthetase; 75.5 26 0.0009 31.8 11.1 70 124-195 35-104 (455)
35 4fm3_A Uncharacterized hypothe 74.7 23 0.00078 26.0 9.1 57 141-197 32-94 (98)
36 1m1j_A Fibrinogen alpha subuni 74.4 25 0.00087 32.5 10.5 57 99-155 104-160 (491)
37 1l8d_A DNA double-strand break 73.1 23 0.00079 25.4 12.3 84 107-197 4-101 (112)
38 1fxk_A Prefoldin; archaeal pro 72.5 23 0.00077 25.1 9.6 86 109-199 4-104 (107)
39 3vkg_A Dynein heavy chain, cyt 71.0 69 0.0024 36.3 14.7 29 165-193 2054-2082(3245)
40 3swk_A Vimentin; cytoskeleton, 70.0 26 0.0009 24.7 9.2 35 117-151 4-38 (86)
41 3na7_A HP0958; flagellar bioge 68.9 48 0.0016 27.4 14.0 68 88-155 14-81 (256)
42 3mud_A DNA repair protein XRCC 68.9 23 0.00079 28.6 8.1 51 94-144 116-166 (175)
43 2lf0_A Uncharacterized protein 67.9 16 0.00056 27.8 6.6 54 132-185 8-61 (123)
44 1wle_A Seryl-tRNA synthetase; 67.5 52 0.0018 30.4 11.3 33 162-194 118-150 (501)
45 1gd2_E Transcription factor PA 66.5 14 0.00046 25.5 5.4 37 106-142 29-65 (70)
46 3tnu_A Keratin, type I cytoske 66.1 39 0.0013 25.3 11.0 34 106-139 38-71 (131)
47 2b9c_A Striated-muscle alpha t 66.0 44 0.0015 25.9 11.7 15 108-122 54-68 (147)
48 3tnu_B Keratin, type II cytosk 65.6 40 0.0014 25.2 9.4 33 106-138 36-68 (129)
49 3tnu_A Keratin, type I cytoske 64.5 42 0.0014 25.1 8.5 77 108-192 33-109 (131)
50 3vkg_A Dynein heavy chain, cyt 64.4 1.6E+02 0.0056 33.4 16.0 27 170-196 2038-2064(3245)
51 3ghg_B Fibrinogen beta chain; 64.2 54 0.0018 30.3 10.5 27 171-197 160-186 (461)
52 1ic2_A Tropomyosin alpha chain 64.2 33 0.0011 23.7 9.2 15 172-186 53-67 (81)
53 3tnu_B Keratin, type II cytosk 63.9 43 0.0015 25.0 11.8 75 109-191 32-106 (129)
54 3ol1_A Vimentin; structural ge 62.9 44 0.0015 24.8 9.1 42 102-143 37-78 (119)
55 3bvo_A CO-chaperone protein HS 62.8 60 0.002 26.3 10.2 74 97-180 128-201 (207)
56 3w03_C DNA repair protein XRCC 62.8 26 0.00088 28.5 7.3 51 94-144 133-183 (184)
57 1gk4_A Vimentin; intermediate 62.6 36 0.0012 23.7 9.7 47 101-147 28-74 (84)
58 3ibp_A Chromosome partition pr 61.7 82 0.0028 27.5 11.0 47 107-154 4-50 (302)
59 1kd8_B GABH BLL, GCN4 acid bas 61.5 9.7 0.00033 23.1 3.4 31 168-198 2-32 (36)
60 3iox_A AGI/II, PA; alpha helix 61.2 1.1E+02 0.0036 28.6 13.2 78 110-191 6-83 (497)
61 2b9c_A Striated-muscle alpha t 61.2 55 0.0019 25.3 12.5 52 101-152 40-91 (147)
62 3htk_A Structural maintenance 60.8 30 0.001 22.2 8.0 51 100-150 6-56 (60)
63 3nmd_A CGMP dependent protein 60.2 40 0.0014 23.4 7.2 24 67-90 9-32 (72)
64 2i1j_A Moesin; FERM, coiled-co 60.1 5 0.00017 37.7 3.0 54 102-155 338-391 (575)
65 3ghg_A Fibrinogen alpha chain; 59.7 1.2E+02 0.004 28.6 13.2 23 175-197 132-154 (562)
66 1x8y_A Lamin A/C; structural p 58.7 44 0.0015 23.4 8.5 28 103-130 32-59 (86)
67 3lss_A Seryl-tRNA synthetase; 57.1 95 0.0033 28.6 11.0 29 166-194 109-138 (484)
68 1fmh_A General control protein 56.7 27 0.00091 20.3 4.8 28 115-142 3-30 (33)
69 2xz3_A Maltose ABC transporter 56.5 62 0.0021 28.4 9.4 43 153-195 372-414 (463)
70 2xdj_A Uncharacterized protein 55.7 47 0.0016 23.4 6.8 46 105-150 19-64 (83)
71 4fla_A Regulation of nuclear P 55.2 72 0.0025 24.8 9.0 36 104-139 73-108 (152)
72 3c3f_A Alpha/beta peptide with 54.7 22 0.00075 21.3 4.1 30 168-197 2-31 (34)
73 1hji_B NUN-protein; bacterioph 54.2 18 0.00063 19.9 3.4 19 139-157 8-26 (26)
74 1deq_A Fibrinogen (alpha chain 54.1 1.2E+02 0.0043 27.2 13.3 28 51-78 18-46 (390)
75 3s4r_A Vimentin; alpha-helix, 52.8 60 0.002 23.2 10.9 14 182-195 78-91 (93)
76 3nmd_A CGMP dependent protein 52.3 52 0.0018 22.8 6.4 21 175-195 41-61 (72)
77 1ic2_A Tropomyosin alpha chain 51.7 56 0.0019 22.5 8.1 48 104-151 25-72 (81)
78 3uo3_A J-type CO-chaperone JAC 51.5 88 0.003 24.7 9.9 72 98-179 99-170 (181)
79 3ck6_A Putative membrane trans 50.8 61 0.0021 26.0 7.9 60 133-193 184-243 (252)
80 2oxj_A Hybrid alpha/beta pepti 50.3 28 0.00096 20.8 4.1 30 168-197 2-31 (34)
81 2dq3_A Seryl-tRNA synthetase; 49.5 29 0.00098 31.2 6.0 65 128-194 38-102 (425)
82 2wq1_A General control protein 49.2 31 0.001 20.5 4.1 29 169-197 2-30 (33)
83 4dk0_A Putative MACA; alpha-ha 49.0 60 0.0021 27.3 7.8 42 96-139 62-103 (369)
84 3m48_A General control protein 48.3 28 0.00097 20.7 3.8 30 169-198 2-31 (33)
85 2fxo_A Myosin heavy chain, car 47.8 84 0.0029 23.4 14.7 23 164-186 101-123 (129)
86 1kd8_A GABH AIV, GCN4 acid bas 47.7 15 0.00051 22.3 2.6 29 169-197 3-31 (36)
87 2k48_A Nucleoprotein; viral pr 47.6 84 0.0029 23.3 9.9 36 150-185 61-100 (107)
88 3etw_A Adhesin A; antiparallel 46.9 91 0.0031 23.5 12.1 25 169-193 77-101 (119)
89 2gd5_A Charged multivesicular 46.5 1E+02 0.0035 24.0 11.7 84 99-188 7-92 (179)
90 4emc_A Monopolin complex subun 44.9 55 0.0019 26.7 6.5 45 106-150 6-50 (190)
91 1fxk_C Protein (prefoldin); ar 44.7 90 0.0031 22.9 8.1 40 100-139 89-128 (133)
92 1fpo_A HSC20, chaperone protei 44.0 1.1E+02 0.0038 23.8 11.0 71 97-174 86-156 (171)
93 3hnw_A Uncharacterized protein 44.0 1.1E+02 0.0036 23.4 10.4 103 77-198 28-134 (138)
94 4ev6_A Magnesium transport pro 43.9 1.3E+02 0.0045 25.5 9.2 12 41-52 116-127 (339)
95 3vp9_A General transcriptional 43.6 90 0.0031 22.6 7.4 18 169-186 70-87 (92)
96 3c3g_A Alpha/beta peptide with 43.5 42 0.0014 19.9 4.1 28 170-197 3-30 (33)
97 3fpp_A Macrolide-specific effl 43.3 89 0.003 26.0 7.9 25 107-131 77-101 (341)
98 1ses_A Seryl-tRNA synthetase; 43.2 1.6E+02 0.0055 26.2 10.0 33 162-194 66-98 (421)
99 1uo4_A General control protein 43.1 41 0.0014 20.1 4.0 31 168-198 2-32 (34)
100 3d5a_X RF1, peptide chain rele 43.0 1.1E+02 0.0038 27.1 8.7 27 158-184 67-93 (354)
101 2hy6_A General control protein 42.8 40 0.0014 20.1 3.9 30 168-197 2-31 (34)
102 3e70_C DPA, signal recognition 42.7 27 0.00094 30.0 4.7 64 73-136 2-84 (328)
103 2xv5_A Lamin-A/C; structural p 42.5 81 0.0028 21.7 7.8 45 103-147 9-53 (74)
104 3mov_A Lamin-B1; LMNB1, B-type 42.1 93 0.0032 22.3 8.5 45 102-146 40-84 (95)
105 2bni_A General control protein 41.8 41 0.0014 20.1 3.9 30 168-197 2-31 (34)
106 3haj_A Human pacsin2 F-BAR; pa 41.8 1.9E+02 0.0066 25.9 14.0 45 109-153 132-176 (486)
107 3mq7_A Bone marrow stromal ant 41.4 1.1E+02 0.0039 23.1 9.6 31 164-194 75-105 (121)
108 3ghg_C Fibrinogen gamma chain; 41.1 1E+02 0.0035 27.9 8.3 14 102-115 55-68 (411)
109 1gk6_A Vimentin; intermediate 41.0 73 0.0025 20.7 7.8 43 105-147 6-48 (59)
110 3frt_A Charged multivesicular 40.8 1.5E+02 0.0051 24.3 11.9 84 98-187 6-91 (218)
111 2f1m_A Acriflavine resistance 40.2 1.4E+02 0.0049 23.9 8.9 23 96-120 52-74 (277)
112 1m1j_C Fibrinogen gamma chain; 40.0 2.1E+02 0.0071 25.7 15.8 31 167-197 105-135 (409)
113 3hnw_A Uncharacterized protein 40.0 1.2E+02 0.0042 23.0 16.1 50 101-150 77-126 (138)
114 3s4r_A Vimentin; alpha-helix, 39.3 1E+02 0.0035 21.9 8.5 8 77-84 13-20 (93)
115 3oja_A Leucine-rich immune mol 39.0 2E+02 0.0069 25.2 13.1 17 170-186 452-468 (487)
116 3aco_A Pacsin2, protein kinase 38.6 1.8E+02 0.0061 24.6 10.1 38 110-147 140-177 (350)
117 3ajw_A Flagellar FLIJ protein; 38.6 1.1E+02 0.0039 22.3 9.1 46 104-149 79-124 (150)
118 2ke4_A CDC42-interacting prote 38.3 56 0.0019 23.7 5.1 26 168-193 63-88 (98)
119 2iub_A CORA, divalent cation t 38.3 1.5E+02 0.0051 25.4 8.8 14 102-115 198-211 (363)
120 2b5u_A Colicin E3; high resolu 38.0 2.6E+02 0.0088 26.2 14.4 32 99-130 314-345 (551)
121 1y4c_A Maltose binding protein 37.9 2.2E+02 0.0076 25.4 12.5 38 79-116 336-373 (494)
122 1f5n_A Interferon-induced guan 37.8 2.3E+02 0.0078 26.5 10.5 79 102-189 504-582 (592)
123 2xz3_A Maltose ABC transporter 37.1 67 0.0023 28.2 6.4 26 172-197 377-402 (463)
124 2akf_A Coronin-1A; coiled coil 36.2 64 0.0022 18.7 4.4 27 171-197 3-29 (32)
125 3efg_A Protein SLYX homolog; x 36.0 69 0.0024 22.2 5.0 29 170-198 24-52 (78)
126 3fyf_A Protein BVU-3222; struc 36.0 15 0.00053 29.7 1.8 40 119-158 6-47 (176)
127 2zdi_C Prefoldin subunit alpha 36.0 1.4E+02 0.0047 22.5 8.3 89 106-198 9-136 (151)
128 3lbx_A Spectrin alpha chain, e 35.9 1.4E+02 0.0048 22.5 9.7 61 128-196 96-156 (161)
129 3e35_A Uncharacterized protein 35.4 79 0.0027 27.5 6.5 36 103-138 238-274 (325)
130 2pnv_A Small conductance calci 35.2 69 0.0024 20.0 4.4 28 164-191 13-40 (43)
131 3onj_A T-snare VTI1; helix, HA 35.0 1.2E+02 0.0041 21.5 11.1 54 102-155 37-94 (97)
132 4aq4_A SN-glycerol-3-phosphate 34.9 1.2E+02 0.0042 25.0 7.5 47 75-121 370-416 (419)
133 1m1j_A Fibrinogen alpha subuni 34.9 2.8E+02 0.0095 25.7 14.9 38 77-114 54-94 (491)
134 1use_A VAsp, vasodilator-stimu 34.7 78 0.0027 20.0 4.6 29 101-129 10-38 (45)
135 2r2v_A GCN4 leucine zipper; co 34.7 69 0.0024 19.1 4.1 29 169-197 3-31 (34)
136 1lrz_A FEMA, factor essential 34.4 90 0.0031 27.4 6.8 24 130-153 277-300 (426)
137 4etp_A Kinesin-like protein KA 34.4 1.8E+02 0.0061 25.8 8.8 15 107-121 11-25 (403)
138 1g8x_A Myosin II heavy chain f 33.9 76 0.0026 31.8 6.8 92 102-193 854-953 (1010)
139 3q0w_A HTH-type transcriptiona 33.9 89 0.0031 23.9 6.0 58 61-118 78-137 (236)
140 2efk_A CDC42-interacting prote 33.6 1.9E+02 0.0065 23.4 15.2 61 93-153 92-156 (301)
141 3mkq_A Coatomer beta'-subunit; 33.6 75 0.0026 28.7 6.3 32 143-174 681-712 (814)
142 1jcd_A Major outer membrane li 33.3 96 0.0033 20.0 5.0 20 174-193 11-30 (52)
143 3g1o_A Transcriptional regulat 33.3 78 0.0027 24.6 5.7 57 61-117 77-135 (255)
144 2z2q_B Coat protein gamma; wil 33.2 30 0.001 21.8 2.4 34 77-111 2-35 (44)
145 1nov_D Nodamura virus coat pro 33.1 31 0.0011 21.7 2.5 34 77-111 2-35 (44)
146 2dgc_A Protein (GCN4); basic d 32.7 91 0.0031 20.6 5.1 28 170-197 33-60 (63)
147 1vp7_A Exodeoxyribonuclease VI 32.5 84 0.0029 23.0 5.2 48 89-147 38-85 (100)
148 2pms_C Pneumococcal surface pr 32.2 1.1E+02 0.0038 23.3 6.0 67 132-198 11-85 (125)
149 1y4c_A Maltose binding protein 31.9 2.8E+02 0.0095 24.8 11.4 75 102-179 390-464 (494)
150 2no2_A HIP-I, huntingtin-inter 31.8 1.5E+02 0.0051 21.6 12.3 31 110-140 12-42 (107)
151 3u59_A Tropomyosin beta chain; 31.8 1.4E+02 0.0047 21.2 14.2 47 74-124 2-48 (101)
152 2yfa_A MCPS, methyl-accepting 31.3 1.9E+02 0.0065 22.7 16.4 23 79-101 54-76 (258)
153 3u06_A Protein claret segregat 31.2 1.5E+02 0.0051 26.5 7.7 17 182-198 46-62 (412)
154 3oja_A Leucine-rich immune mol 30.6 2.8E+02 0.0094 24.3 13.2 32 124-155 364-395 (487)
155 1t2k_D Cyclic-AMP-dependent tr 30.5 1.1E+02 0.0036 19.8 5.0 31 167-197 29-59 (61)
156 3zbh_A ESXA; unknown function, 30.3 1.2E+02 0.0042 20.2 9.9 33 126-161 29-61 (99)
157 1nkp_B MAX protein, MYC proto- 30.3 1.3E+02 0.0044 20.4 5.7 40 159-198 39-78 (83)
158 3viq_A SWI5-dependent recombin 30.2 1.7E+02 0.0059 21.9 7.4 45 104-154 12-56 (122)
159 1t72_A Phosphate transport sys 30.1 1.9E+02 0.0065 22.4 13.6 36 136-171 123-158 (227)
160 1lwu_C Fibrinogen gamma chain; 30.1 1.5E+02 0.0051 25.8 7.3 39 110-148 9-47 (323)
161 2efl_A Formin-binding protein 30.0 2.2E+02 0.0075 23.0 17.1 49 107-155 117-165 (305)
162 1go4_E MAD1 (mitotic arrest de 29.6 1.6E+02 0.0056 21.4 7.5 71 113-193 12-94 (100)
163 3abh_A Pacsin2, protein kinase 29.4 2.4E+02 0.0081 23.2 15.5 45 109-153 139-183 (312)
164 2zqm_A Prefoldin beta subunit 29.3 1.5E+02 0.0051 20.9 7.0 31 126-156 83-113 (117)
165 2odv_A Plectin 1, HD1; plakin 29.3 2.4E+02 0.0081 23.1 10.1 31 165-195 163-193 (235)
166 3mkq_B Coatomer subunit alpha; 29.2 41 0.0014 26.9 3.3 34 142-175 33-66 (177)
167 3jsv_C NF-kappa-B essential mo 29.2 1.6E+02 0.0056 21.3 8.7 18 177-194 71-88 (94)
168 3swy_A Cyclic nucleotide-gated 29.0 1.1E+02 0.0038 19.3 7.2 36 104-139 3-38 (46)
169 3he4_A Synzip6; heterodimeric 28.4 54 0.0019 21.0 3.1 32 91-122 23-54 (56)
170 4abx_A DNA repair protein RECN 28.1 2E+02 0.007 22.0 7.3 27 99-125 86-113 (175)
171 3gp4_A Transcriptional regulat 28.1 1.3E+02 0.0043 22.6 5.8 14 103-116 85-98 (142)
172 2ic6_A Nucleocapsid protein; h 28.1 1.6E+02 0.0054 20.7 8.7 58 128-185 6-70 (78)
173 2e7s_A RAB guanine nucleotide 27.7 72 0.0025 24.6 4.3 83 111-197 44-126 (135)
174 2yko_A LINE-1 ORF1P; RNA-bindi 27.6 1.4E+02 0.0049 25.0 6.5 47 107-153 7-53 (233)
175 2vgq_A Maltose-binding peripla 27.3 1.2E+02 0.004 26.6 6.3 107 79-185 351-462 (477)
176 3pik_A Cation efflux system pr 27.2 2.8E+02 0.0095 23.3 11.5 110 73-188 320-429 (446)
177 1nkp_B MAX protein, MYC proto- 26.9 97 0.0033 21.1 4.6 31 106-136 47-77 (83)
178 3f1b_A TETR-like transcription 26.9 63 0.0021 23.5 3.8 58 61-118 48-105 (203)
179 1jnm_A Proto-oncogene C-JUN; B 26.8 1.3E+02 0.0045 19.4 5.0 27 170-196 32-58 (62)
180 1gqe_A Release factor 2, RF2; 26.7 3.4E+02 0.012 24.1 12.1 47 134-180 68-114 (365)
181 1pl5_A Regulatory protein SIR4 26.6 2E+02 0.007 21.5 8.5 69 82-150 57-125 (142)
182 2v71_A Nuclear distribution pr 26.6 2.5E+02 0.0087 22.6 16.1 57 86-142 29-85 (189)
183 1ci6_A Transcription factor AT 26.3 1.4E+02 0.0048 19.5 5.8 34 165-198 28-61 (63)
184 1gng_X Frattide, glycogen synt 26.2 40 0.0014 20.6 2.0 14 97-110 9-22 (39)
185 3u06_A Protein claret segregat 26.2 2.7E+02 0.0091 24.8 8.5 48 103-150 7-54 (412)
186 2jsw_A Talin-1; C-terminal act 26.1 59 0.002 26.4 3.8 32 94-125 2-33 (189)
187 2f23_A Anti-cleavage anti-GREA 25.9 2.2E+02 0.0075 21.6 8.2 57 129-185 12-71 (156)
188 1nkp_A C-MYC, MYC proto-oncoge 25.8 1.6E+02 0.0056 20.4 5.7 37 102-138 45-84 (88)
189 4gkw_A Spindle assembly abnorm 25.7 2.4E+02 0.0081 22.0 13.3 103 93-195 5-119 (167)
190 3f31_A Spectrin alpha chain, b 25.4 1.3E+02 0.0044 22.3 5.4 23 170-192 120-142 (149)
191 3o0z_A RHO-associated protein 25.2 2.6E+02 0.0088 22.2 12.7 12 104-115 11-22 (168)
192 3t97_C Nuclear pore glycoprote 25.1 1.6E+02 0.0054 19.7 6.0 43 105-147 4-46 (64)
193 2ic9_A Nucleocapsid protein; h 25.0 2E+02 0.0069 20.9 7.5 39 150-188 31-73 (96)
194 1gl2_D Syntaxin 8, vesicle tra 24.8 1.5E+02 0.005 19.2 6.5 47 106-152 2-48 (65)
195 3q4f_C DNA repair protein XRCC 24.8 1.7E+02 0.0057 23.8 6.1 42 94-135 142-183 (186)
196 3cve_A Homer protein homolog 1 24.5 1.8E+02 0.006 20.0 8.2 54 94-147 9-62 (72)
197 3n94_A Fusion protein of malto 24.4 2.5E+02 0.0086 24.2 7.9 49 79-127 338-386 (475)
198 3dcf_A Transcriptional regulat 24.3 2.1E+02 0.0071 20.8 8.9 58 60-117 64-121 (218)
199 3abd_X REV3, HREV3, DNA polyme 24.3 23 0.0008 22.8 0.8 11 40-50 23-33 (52)
200 3qh9_A Liprin-beta-2; coiled-c 24.1 1.9E+02 0.0066 20.4 9.3 24 174-197 54-77 (81)
201 1hjb_A Ccaat/enhancer binding 23.6 2E+02 0.0068 20.3 5.9 32 166-197 42-73 (87)
202 1nyh_A Regulatory protein SIR4 23.6 2.5E+02 0.0086 21.5 8.6 69 82-150 81-149 (166)
203 1sjj_A Actinin; 3-helix bundle 23.6 4.7E+02 0.016 24.7 10.5 55 141-195 495-553 (863)
204 3u59_A Tropomyosin beta chain; 23.3 2E+02 0.0069 20.3 13.4 21 177-197 75-95 (101)
205 3ghg_B Fibrinogen beta chain; 23.2 4.4E+02 0.015 24.2 10.4 27 169-195 165-191 (461)
206 2yy0_A C-MYC-binding protein; 23.1 1.5E+02 0.0053 18.9 5.3 28 171-198 23-50 (53)
207 1zme_C Proline utilization tra 22.6 1.2E+02 0.004 19.3 4.2 23 176-198 46-68 (70)
208 2eqb_B RAB guanine nucleotide 22.5 2.3E+02 0.0077 20.6 11.3 46 102-147 15-60 (97)
209 3k29_A Putative uncharacterize 22.4 3E+02 0.01 22.0 9.4 36 104-139 90-125 (169)
210 2l5g_B Putative uncharacterize 22.3 1.5E+02 0.0051 18.4 5.4 8 116-123 12-19 (42)
211 1ik9_A DNA repair protein XRCC 22.3 3.2E+02 0.011 22.2 13.8 53 94-146 113-165 (213)
212 1fxk_C Protein (prefoldin); ar 22.2 2.3E+02 0.0078 20.6 13.1 88 108-198 3-126 (133)
213 3qwe_A GMIP, GEM-interacting p 22.2 3.6E+02 0.012 22.9 9.6 36 110-145 116-151 (279)
214 1x79_B RAB GTPase binding effe 22.1 2.5E+02 0.0084 20.9 11.1 88 102-193 9-96 (112)
215 3fav_A ESAT-6-like protein ESX 22.1 1.9E+02 0.0066 19.6 5.8 30 126-155 20-53 (101)
216 1fxk_A Prefoldin; archaeal pro 22.1 1.5E+02 0.0052 20.5 5.0 22 130-151 82-103 (107)
217 3aqt_A Bacterial regulatory pr 22.1 2.7E+02 0.0092 21.3 7.1 58 59-116 78-135 (245)
218 4dnd_A Syntaxin-10, SYN10; str 21.6 2.6E+02 0.0089 20.9 7.4 26 127-152 67-92 (130)
219 2wh0_Q Pkcev3, protein kinase 21.5 69 0.0024 18.3 2.3 16 103-118 10-25 (31)
220 3m91_A Proteasome-associated A 21.4 1.7E+02 0.0058 18.7 7.1 35 114-148 10-44 (51)
221 3viq_B Mating-type switching p 21.2 1.5E+02 0.0051 21.1 4.6 25 171-195 5-29 (85)
222 3m9b_A Proteasome-associated A 21.2 1.5E+02 0.005 25.2 5.3 39 108-146 56-94 (251)
223 2wt7_A Proto-oncogene protein 21.2 1.8E+02 0.0061 18.9 6.3 32 167-198 30-61 (63)
224 2e7s_A RAB guanine nucleotide 21.2 1.5E+02 0.0051 22.8 5.0 88 104-196 44-132 (135)
225 2nps_D Syntaxin-6; vesicle fus 21.2 1.9E+02 0.0065 19.6 5.2 47 106-152 12-58 (82)
226 1lwu_C Fibrinogen gamma chain; 21.0 3.5E+02 0.012 23.4 8.0 40 111-150 17-56 (323)
227 3m6j_A Uncharacterized protein 21.0 3E+02 0.01 21.4 7.0 38 61-99 74-111 (145)
228 2ocy_A RAB guanine nucleotide 20.9 3E+02 0.01 21.5 13.9 85 111-197 56-145 (154)
229 3viq_B Mating-type switching p 20.9 2.3E+02 0.0078 20.1 8.6 64 130-193 4-67 (85)
230 1f8v_D Mature capsid protein g 20.8 23 0.00078 21.9 0.2 15 77-91 2-16 (40)
231 1l8d_A DNA double-strand break 20.7 2.3E+02 0.0077 19.9 11.8 34 107-140 11-44 (112)
232 3cvf_A Homer-3, homer protein 20.7 2.2E+02 0.0076 19.8 7.4 52 96-147 17-68 (79)
233 1vcs_A Vesicle transport throu 20.1 2.4E+02 0.0083 20.0 7.9 25 129-153 69-93 (102)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=97.59 E-value=0.0034 Score=56.65 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 029028 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA----- 153 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A----- 153 (200)
+..+.+.+...+..++..-.||+..|+....++++.|.+.+... +..-....+++++.++++...+.+.+|-.|
T Consensus 350 ~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (471)
T 3mq9_A 350 MSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVM 428 (471)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHH
Confidence 56777888888888888888999999999999999998886655 777888889999999999999999888765
Q ss_pred -HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 154 -LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 154 -L~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
|..-=|.---.++.+++++|.++..+..+++.+..+|++++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33332322233667889999999999999999999998886
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.58 E-value=0.0019 Score=46.31 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 118 ar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
...++.........++.+...++..++.-...|+..+ .++-.-|..||.+|+.||.+++.+..++..++.++..+
T Consensus 4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666777777888888888899999999999998 56678999999999999999999999999999998876
No 3
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=95.89 E-value=0.22 Score=40.01 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 129 QKRLENKCKAAEQASEDWYRKAQLALQKGEED----LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 129 ~k~le~k~~~~~~~i~~we~rA~~AL~~G~ED----LAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+.+++++..++.+-.+.......|.++|+.+ +|+.++..+.. ..++-..+.+++...-.+....++.
T Consensus 23 ~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~-~~~l~~~~a~l~~v~~~lqt~~~~~ 94 (179)
T 2gd5_A 23 MRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA-VSKLYASKAHMNSVLMGMKNQLAVL 94 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666667778889999988 77777777765 5555558888888888887776644
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=94.18 E-value=0.97 Score=40.90 Aligned_cols=69 Identities=4% Similarity=0.108 Sum_probs=57.7
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLA 162 (200)
+..+.|=+..+.|+-.|++..+.-.++.|...+..-+.|+.-+..+..+|+++|..+..+...=.-..+
T Consensus 101 ~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~ 169 (390)
T 1deq_A 101 FAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCS 169 (390)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 344456678889999999999999999999999999999999999999999999999666654443333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.07 E-value=2 Score=35.94 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
.-|+..+..++..+..++..+..+....++++.++.+....+.+++.+-.
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666777777777777777776653
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.73 E-value=1.3 Score=31.71 Aligned_cols=67 Identities=13% Similarity=0.286 Sum_probs=58.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029028 86 VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (200)
Q Consensus 86 vra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~ 156 (200)
+.+.|..++ |-..+|...|.++++.-..+......+...+..+.++...+..+...|+.|...-|.+
T Consensus 11 LE~KIq~av----dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 11 LEAKVQQAI----DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555 5578999999999999999999999999999999999999999999999999876654
No 7
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=92.33 E-value=2.2 Score=30.53 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
-+-.+..+++.+.+++..+.......+.++.++..+..+..++..+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999999999999999999999999888
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.22 E-value=3.6 Score=32.69 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=65.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 029028 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR 169 (200)
Q Consensus 90 in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk 169 (200)
+..=++++|+--...+..|+++++.+..+-..+-...+.......+-..++.+|..+..+...| |.-|.+|-...
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA-----E~RAE~AERsv 100 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA-----ETRAEFAERSV 100 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 4445555666666667777777777777777777777776666667777777777777776666 34455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
..++..++.+...+...+.....+...
T Consensus 101 ~kLEk~id~lEd~L~~~Kek~~~i~~e 127 (155)
T 2efr_A 101 TKLEKSIDDLEDELYAQKLKYKAISEE 127 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555544444433
No 9
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.20 E-value=3 Score=31.68 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL--ALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~--AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
-+..+..+++.+.+++..+.......+.++.++..+..+..++..+... ..-..-++.-.....++.+++..+..+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888888888888777655433 22223355555666677777777777777
Q ss_pred HHHHHHHHHHHH
Q 029028 182 QLDQQKNVVNNL 193 (200)
Q Consensus 182 qld~~~~~ve~L 193 (200)
.++........|
T Consensus 91 rleeeee~~~~L 102 (129)
T 2fxo_A 91 RLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777755544444
No 10
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=90.67 E-value=6.5 Score=32.70 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK---RRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 128 ~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~---rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..+.|++++..++.+-.+.....+.|.++|+-+-||-.+. |+..+...+-..+.+++...-++....+..
T Consensus 22 ~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~ 94 (218)
T 3frt_A 22 EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888899999999999887775554 444455556666667766666665555443
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.74 E-value=5.1 Score=30.07 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~ 141 (200)
.+.+.+|++++.+|..+...-+++..+...+...+++.+.
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555555555544444444433
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.70 E-value=5.4 Score=40.33 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029028 167 KRRKSYADNANALKAQLDQQKN 188 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~ 188 (200)
.+...++++...|++|+++++.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555554443
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.60 E-value=11 Score=34.32 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 114 DLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (200)
Q Consensus 114 ~l~kar~~lA~v~A~~k~le~k~~~~~~~i~ 144 (200)
++.+.+..+..+.....+.++.+...+.+++
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444443
No 14
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=88.06 E-value=9 Score=35.40 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029028 175 NANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 175 ~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.+..|+..++.+...+.+|+.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 15
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.55 E-value=9.1 Score=29.18 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+.+.+++++..+...|......+++|++..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567778888888888888888888887654
No 16
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.25 E-value=11 Score=28.28 Aligned_cols=16 Identities=6% Similarity=0.318 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 029028 167 KRRKSYADNANALKAQ 182 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~q 182 (200)
.+|.+++.++..++.+
T Consensus 90 ~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 17
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=83.93 E-value=15 Score=34.29 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 169 RKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
.++|+..+..++..++......+++
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.70 E-value=10 Score=34.44 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLA 127 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A 127 (200)
+.+.+..+.+.+..+.....
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~ 477 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQ 477 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.63 E-value=25 Score=31.07 Aligned_cols=26 Identities=4% Similarity=0.150 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 172 YADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 172 ~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+..+++++.++..++.+++++...+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445544444444444443
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.37 E-value=12 Score=37.80 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
.|+++++.+.+.+..+..+......++.++..++.+.++++
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555444
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.26 E-value=8.1 Score=36.39 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCC
Q 029028 78 LFDRLARVVKSYANAILSSFED 99 (200)
Q Consensus 78 if~Rl~~lvra~in~~ldk~ED 99 (200)
++.+.-+=|+..||++=+.++|
T Consensus 54 lLdkqErDltkrINELKnqLEd 75 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFE 75 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH
T ss_pred hHHhhcCcHHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.50 E-value=20 Score=29.22 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=31.9
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 87 KSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 87 ra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
+..++...+.+++-+.-|+.+...-++=-.+....|..+-...+.+..+...+..+.+.|..+...
T Consensus 16 k~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 16 KELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555445544444444444444444444455555555555555555555554433
No 23
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=81.10 E-value=14 Score=37.30 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 117 kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
+.+..+.........++..+.+++.+...++.+.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333
No 24
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=80.75 E-value=14 Score=26.78 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
..++..+++++..-..+.+.|..+......+..++..++.+...+...=..-... =..-......++++...+..
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~e-----yn~~~~ql~e~~dE~~Sl~~ 81 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQRE-----YSEFKRQQLELDDELKSVEN 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666665555433322222 11233456778899999999
Q ss_pred HHHHHHHHHHHHHh
Q 029028 182 QLDQQKNVVNNLVS 195 (200)
Q Consensus 182 qld~~~~~ve~Lk~ 195 (200)
+++-...+.++|++
T Consensus 82 q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 82 QMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999986
No 25
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=80.29 E-value=11 Score=31.64 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG---EEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G---~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
+..+.+++.++..++..+..+.+.....+.+++..+.. .+.| +.++ ..+-......+.++..+++
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L-----------~~~~~~s~~~~-~~a~~~~~~~~a~l~~~~a 135 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRL-----------AQTQAVSQQDL-DNAATEMAVKQAQIGTIDA 135 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-----------HHTSSSTTHHH-HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCccHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655555555544444444333322 1222 1111 1222223333445555566
Q ss_pred HHHHHHHHHHHHHhhh
Q 029028 182 QLDQQKNVVNNLVSNT 197 (200)
Q Consensus 182 qld~~~~~ve~Lk~~l 197 (200)
+++..+..++.++.++
T Consensus 136 ~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 136 QIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666655555554443
No 26
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=79.82 E-value=16 Score=27.11 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
+..+.=.+....++...++.+.......+.++..+.....+|..+...
T Consensus 11 ~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~ 58 (150)
T 3ajw_A 11 ETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNT 58 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666777777777777777777777777777776655443
No 27
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=79.04 E-value=22 Score=28.09 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029028 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 97 ~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G 157 (200)
++|.+.-.+..-| ++.+|..+...+..+.+....++.++......+..++.....+-++-
T Consensus 13 ae~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrE 72 (155)
T 2efr_A 13 LSKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKE 72 (155)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHH
Confidence 4555555555555 77777777777777777777777777777777777666666665544
No 28
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=78.93 E-value=12 Score=26.92 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE---------------EDLAREALKRRKSY 172 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~---------------EDLAr~AL~rk~~~ 172 (200)
+.++-..+...++.+..+......++.++.++..-++.++.- ..+. ++.-...-.++..+
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l-----~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL-----PDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 334555666677777777777777777777766655554321 1111 34444445566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 173 ADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 173 e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
+..+..++.+++.....+.+++..|+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998875
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.20 E-value=36 Score=34.40 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 131 ~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.++.++..+++++++.+.....+.+. .+++=...-+-+.++++.+..++.+...+++++++|..
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke-~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTE-KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444444333221 22221112222245666666677777777777776664
No 30
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.82 E-value=19 Score=33.40 Aligned_cols=65 Identities=5% Similarity=0.130 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 128 ~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
.++.+..++++++.+.....+..-.+.+.|++ +.+.+.+...+.+++..++.++.+.+..+..+-
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~--~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED--AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445543 345667777888888888888888777776654
No 31
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=77.12 E-value=12 Score=33.74 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=42.2
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 74 ~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
+-|+|+.++.. +...+.++-..+.||.-.=|+. .+ ..+.+-...|..++.....++..++++... -.++
T Consensus 11 ~~~~~~~~l~~-~~~r~~el~~~l~~p~~~~d~~--~~-~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~-------~el~ 79 (371)
T 1zbt_A 11 HHMNIYDQLQA-VEDRYEELGELLSDPDVVSDTK--RF-MELSREEANSRETVAVYREYKQVVQNIADA-------QEMI 79 (371)
T ss_dssp CCCCHHHHHHH-HHHHHHHC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHH-------HHC-
T ss_pred hhhhHHhhHHH-HHHHHHHHHHHhcCCcchhCHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 56999999986 4567888888888996544421 00 112222233333333333333333333222 2222
Q ss_pred Hh-cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 154 LQ-KGEEDLAREALKRRKSYADNANALKAQL 183 (200)
Q Consensus 154 L~-~G~EDLAr~AL~rk~~~e~~a~~lq~ql 183 (200)
-. .+|+++...|..+...++.+++.++..+
T Consensus 80 ~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l 110 (371)
T 1zbt_A 80 KDASGDPELEEMAKEELKNSKVAKEEYEEKL 110 (371)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4577887777777777666666666544
No 32
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.96 E-value=49 Score=30.48 Aligned_cols=30 Identities=7% Similarity=0.158 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
.....++..++.+...+..++..+..+...
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566667777777777777665543
No 33
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=75.85 E-value=9.8 Score=32.39 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
.....+.++..++.+++.++..++.++.++.
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556667777777777777777776654
No 34
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=75.54 E-value=26 Score=31.84 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
..-..++.+..++++++.+.....+....+...|.+ +.+...+...+.+++..+++++.+.+..+..+--
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555643 3455677777888888888888887777766543
No 35
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=74.67 E-value=23 Score=26.04 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 141 QASEDWYRKAQLALQKGEEDLAREALKR------RKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 141 ~~i~~we~rA~~AL~~G~EDLAr~AL~r------k~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..+.+.-.+|+.|+..++-+.||.-+++ .+........-+.+++++++.|..|+..|
T Consensus 32 ~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 32 KLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556788999999999988765432 23333444444555666666666666554
No 36
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=74.37 E-value=25 Score=32.55 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
|=+..+.|+-.|++..+.-.+.-|...+...+.|+.-+..+..+|+++|.-+...+.
T Consensus 104 dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 104 QLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666666666666666666666665555444
No 37
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=73.15 E-value=23 Score=25.40 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE--------------EDLAREALKRRKSY 172 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~--------------EDLAr~AL~rk~~~ 172 (200)
.+.+.++.+.+.+..+..+......++.++..+...+..++. .|+ .++-...-.+...+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~-------~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l 76 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK-------AKGKCPVCGRELTDEHREELLSKYHLDLNNS 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------CSEECTTTCCEECHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666655532 133 23444455555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 173 ADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 173 e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
...+..+..++..++..+..|...+
T Consensus 77 ~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 77 KNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777776666554
No 38
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=72.54 E-value=23 Score=25.06 Aligned_cols=86 Identities=10% Similarity=0.191 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE---------------EDLAREALKRRKSYA 173 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~---------------EDLAr~AL~rk~~~e 173 (200)
.++-..+.+.+..+..+......++.++.++..-.++++.- ..+. ++.-...-.++..++
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l-----~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA-----ADDAEVYKSSGNILIRVAKDELTEELQEKLETLQ 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777777777776665555421 1111 333344445667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 029028 174 DNANALKAQLDQQKNVVNNLVSNTRV 199 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~Lk~~l~~ 199 (200)
..+..++.+++..+....+++..|+.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988763
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.01 E-value=69 Score=36.32 Aligned_cols=29 Identities=14% Similarity=0.379 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 165 ALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
+..++..++++++..+..++..+.-+..|
T Consensus 2054 ~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2054 LIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555444444443
No 40
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=69.96 E-value=26 Score=24.74 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 117 kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
+.|..+-.+....-+++-+++.+...++++..+-+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555566666666666666655544
No 41
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.90 E-value=48 Score=27.37 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=53.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 88 a~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
..++.-++.++.-..-|...|.++++.+..++..+..+......++.++..++..+++...++...-.
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655666788888888888888888888888888888888888888888887777533
No 42
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=68.89 E-value=23 Score=28.61 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=39.8
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~ 144 (200)
+.+++||..++++.|..++..+.+..+.+......-.....++..+..+.+
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999998888888887777766666666666655543
No 43
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=67.92 E-value=16 Score=27.83 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
+..++..+....+....+-..|...||.++..+...++..+..++..++.+...
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888889999999999999999999999999999999988877654
No 44
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=67.50 E-value=52 Score=30.38 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 162 Ar~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+.+...+...+.+++..+++++.+.+..+..+-
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777766553
No 45
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.46 E-value=14 Score=25.52 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (200)
++|.+++..+.+.......+..+...|..++..+..+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444444444444444444433
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.13 E-value=39 Score=25.32 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~ 139 (200)
..|.+++..+......+.........++..+.+.
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444444444444444444333
No 47
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=66.02 E-value=44 Score=25.90 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQAT 122 (200)
Q Consensus 108 IReme~~l~kar~~l 122 (200)
|..++.+|..++...
T Consensus 54 ~~~lE~qLkeak~~a 68 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIA 68 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.61 E-value=40 Score=25.18 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~ 138 (200)
..|.+++..+...+..+..+......++..+.+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.45 E-value=42 Score=25.13 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~ 187 (200)
++..+..+.+.+..+....++-..+..+...++..+.+.+.+-..++.. +-.....++.++..++..++.+.
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~--------~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ--------IQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555444444432 22333445555655555555554
Q ss_pred HHHHH
Q 029028 188 NVVNN 192 (200)
Q Consensus 188 ~~ve~ 192 (200)
.....
T Consensus 105 ~EYq~ 109 (131)
T 3tnu_A 105 QEYKI 109 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 50
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.45 E-value=1.6e+02 Score=33.44 Aligned_cols=27 Identities=4% Similarity=0.083 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
+++++.++.++++++....+.++|+..
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555544444444444433
No 51
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=64.20 E-value=54 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 171 SYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 171 ~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.++..+..|+..++.....|.+|+..+
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~ 186 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDV 186 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666677777777776666654
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=64.16 E-value=33 Score=23.70 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 029028 172 YADNANALKAQLDQQ 186 (200)
Q Consensus 172 ~e~~a~~lq~qld~~ 186 (200)
++++++..+..+...
T Consensus 53 lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 53 TEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444333333333
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.85 E-value=43 Score=24.98 Aligned_cols=75 Identities=13% Similarity=0.229 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~ 188 (200)
+..+..+.+.+..+....++-..+..+...++..+.+.+.+-..++.. +-.....++.++..++...+.+..
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~--------~q~~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD--------ARNKLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444555555554444444444444444444444444443333322 222333455555555555554444
Q ss_pred HHH
Q 029028 189 VVN 191 (200)
Q Consensus 189 ~ve 191 (200)
...
T Consensus 104 EYq 106 (129)
T 3tnu_B 104 EYQ 106 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 54
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.86 E-value=44 Score=24.78 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i 143 (200)
.-|.-.|..++..+...|.-...-++.+..+|..+..+.+.+
T Consensus 37 a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 445555666666666666665555555555555444444443
No 55
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=62.85 E-value=60 Score=26.29 Aligned_cols=74 Identities=14% Similarity=0.273 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 029028 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (200)
Q Consensus 97 ~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a 176 (200)
..||+-++++ -|.++.|.++... ..++.=..++...++++......|+..|+-+-|...+.+..=+..-.
T Consensus 128 ~~d~~fLme~--me~~E~le~~~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~ 197 (207)
T 3bvo_A 128 EMDRQFLIEI--MEINEKLAEAESE--------AAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIE 197 (207)
T ss_dssp SSCHHHHHHH--HHHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHHHHHHccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3467644443 3444555554421 12444445566677777788888999999988888887776655444
Q ss_pred HHHH
Q 029028 177 NALK 180 (200)
Q Consensus 177 ~~lq 180 (200)
+.++
T Consensus 198 ~~i~ 201 (207)
T 3bvo_A 198 EKIK 201 (207)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 56
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=62.83 E-value=26 Score=28.50 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=42.8
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~ 144 (200)
++++.||..++..+|.-+=+.+...+........+-.+|.++.++..++.+
T Consensus 133 L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 133 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567789999999999988888888888888888888888888887777655
No 57
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=62.64 E-value=36 Score=23.70 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
..-++..|-+++.++.++|..++....+.+.+-.-.-.+..+|..|.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555566666666666666555555444444444445554443
No 58
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=61.66 E-value=82 Score=27.47 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
.|.+++..+.+....-........++..+|.++...+-.|.. |..||
T Consensus 4 ~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~-aq~al 50 (302)
T 3ibp_A 4 MIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLA-AQNSL 50 (302)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHH-HHHHH
Confidence 356777777777777788888888899999999999999975 44443
No 59
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=61.50 E-value=9.7 Score=23.12 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
|..++|+.++.+-.....++.+|.+|+..+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4567778888888888888888888876553
No 60
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=61.25 E-value=1.1e+02 Score=28.59 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ 189 (200)
+.+..|.....+|+++...-..++..|+....+.+.-. .++++.++.+-+.-...++.|+..++++++.++..+..
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n----~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAAN----AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555555544444333211 12333444444444444555555555555555554444
Q ss_pred HH
Q 029028 190 VN 191 (200)
Q Consensus 190 ve 191 (200)
..
T Consensus 82 ~A 83 (497)
T 3iox_A 82 LA 83 (497)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 61
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=61.17 E-value=55 Score=25.34 Aligned_cols=52 Identities=6% Similarity=-0.020 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.+.|+.--..-++.+......|-.+........++|.+....+.-++..-..
T Consensus 40 ~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLer 91 (147)
T 2b9c_A 40 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 91 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555554444444433
No 62
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=60.84 E-value=30 Score=22.18 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 100 P~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
-..-++..+.++.+.+..-+..+-.......++...++.+...|.+|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888888888999999999999999999997654
No 63
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.17 E-value=40 Score=23.41 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=7.1
Q ss_pred cCCCcccccCcHHHHHHHHHHHHH
Q 029028 67 QGGGALNTRMNLFDRLARVVKSYA 90 (200)
Q Consensus 67 ~~~~~~~~~Msif~Rl~~lvra~i 90 (200)
|-|-+.-+.||-+..|..+++-..
T Consensus 9 ~~~~~~~~~mgti~eLq~~L~~K~ 32 (72)
T 3nmd_A 9 HHGMASIEGRGSLRDLQYALQEKI 32 (72)
T ss_dssp ----------CHHHHHHHHHHHHH
T ss_pred ccchhhcccCCcHHHHHHHHHHHH
Confidence 334442345776555554444443
No 64
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=60.11 E-value=5 Score=37.67 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
.-|++-+++++++..+++.+|.+..-....|+.+...++.+.+.++.++..|-.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~ 391 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQA 391 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888888887888888888888888888877766643
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.71 E-value=1.2e+02 Score=28.64 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 029028 175 NANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 175 ~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
++..|+..|+++...+.+|+..|
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 66
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=58.67 E-value=44 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQK 130 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k 130 (200)
-+...|.+++.++.++|..++....+.+
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 67
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=57.10 E-value=95 Score=28.57 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=18.5
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 166 LKR-RKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 166 L~r-k~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+.+ ...+.+++..++.++.+.+..+..+-
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 56666777777777776666665543
No 68
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=56.71 E-value=27 Score=20.28 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 115 LVKMRQATAQVLASQKRLENKCKAAEQA 142 (200)
Q Consensus 115 l~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (200)
+.+..+.++++.++..++++++.+++.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 5667788999999999999988877653
No 69
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=56.54 E-value=62 Score=28.44 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=21.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 153 ALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 153 AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.++++.+++..+.-.-.+..++.+..++.+++.+.+.|-+=++
T Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 414 (463)
T 2xz3_A 372 LSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRR 414 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444444444444455555566666666665555544333
No 70
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.69 E-value=47 Score=23.45 Aligned_cols=46 Identities=4% Similarity=0.058 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
.+.+-+|..++...+..++.....-..+..+++.+.+.-.+.+...
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888877777777777777666555443
No 71
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=55.20 E-value=72 Score=24.83 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~ 139 (200)
|...+.++-..|.+--..|+.-+-.++++...+...
T Consensus 73 l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~ 108 (152)
T 4fla_A 73 LSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEY 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 72
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=54.70 E-value=22 Score=21.27 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
|..++|+.++.+-..-..++.+|.+|+.-|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455677777777777777777777777655
No 73
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=54.16 E-value=18 Score=19.95 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 029028 139 AEQASEDWYRKAQLALQKG 157 (200)
Q Consensus 139 ~~~~i~~we~rA~~AL~~G 157 (200)
-...|..|+++..-||+.|
T Consensus 8 drrriarwekriayalkng 26 (26)
T 1hji_B 8 DRRRIARWEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 3567899999999999876
No 74
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.09 E-value=1.2e+02 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=11.8
Q ss_pred eeccccccCCCCccc-ccCCCcccccCcH
Q 029028 51 VTRLRIAPSSRSHCY-RQGGGALNTRMNL 78 (200)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~Msi 78 (200)
++|-|+.--..+.|. .-.+++...-||.
T Consensus 18 ~RGpR~vE~~~s~Ck~~d~~~C~DeDwG~ 46 (390)
T 1deq_A 18 VRGPRLVERQQSACKETGWPFCSDEDWNT 46 (390)
T ss_pred CCCCchhhhhccccCCCCCCCCchhhccC
Confidence 445555443333333 1234444444554
No 75
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=52.78 E-value=60 Score=23.15 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHh
Q 029028 182 QLDQQKNVVNNLVS 195 (200)
Q Consensus 182 qld~~~~~ve~Lk~ 195 (200)
+++.+...++.++.
T Consensus 78 e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 78 ERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444444443
No 76
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.27 E-value=52 Score=22.82 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029028 175 NANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 175 ~a~~lq~qld~~~~~ve~Lk~ 195 (200)
.+..++..+++.+..+.+|++
T Consensus 41 ~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 77
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.66 E-value=56 Score=22.46 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~ 151 (200)
++..+++.+....++...+..+.-.-..++.++..++......+.+..
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444333
No 78
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=51.53 E-value=88 Score=24.72 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 029028 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (200)
Q Consensus 98 EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~ 177 (200)
.||+-+.++. |.+++|.++... ..++.-..++...+..+......++..++-+-|+..+.+..=+..-.+
T Consensus 99 ~d~~fLme~m--e~rE~leea~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~ 168 (181)
T 3uo3_A 99 SDPQLLLKVL--DIHDELSQMDDE--------AGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAK 168 (181)
T ss_dssp TCHHHHHHHH--HHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHhccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3665544432 445555554321 123344456778888889999999999998888888777665555444
Q ss_pred HH
Q 029028 178 AL 179 (200)
Q Consensus 178 ~l 179 (200)
.+
T Consensus 169 ~i 170 (181)
T 3uo3_A 169 AF 170 (181)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 79
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=50.80 E-value=61 Score=26.01 Aligned_cols=60 Identities=8% Similarity=0.018 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 133 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 133 e~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
.+-+.-.+.-+..+...-.. +........+....+...+.+.++.+...+..+......+
T Consensus 184 rr~l~p~r~~l~~L~r~~~~-~~~~~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~ 243 (252)
T 3ck6_A 184 KRFIRPQQYAIRDLIESESE-LVTSRPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHN 243 (252)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444332223 4556666777777777777777777777777666555444
No 80
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=50.35 E-value=28 Score=20.80 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
|..++|+.++.+=..-..++.+|++|+.-|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455677777777777777778888877655
No 81
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=49.48 E-value=29 Score=31.21 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 128 ~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
.++.+..++++++.+.....++...+.+.|.+ +.+...+...+.+++..++.++...+..+..+-
T Consensus 38 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 38 RRREIIKRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333344432 234455666777777777777777777666554
No 82
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.20 E-value=31 Score=20.52 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 169 RKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..++|+.++.+-.....++.+|.+|+.-+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35677777777777777777777777654
No 83
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=49.02 E-value=60 Score=27.35 Aligned_cols=42 Identities=2% Similarity=-0.048 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (200)
Q Consensus 96 k~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~ 139 (200)
.++++. ++..+.+.+.++..++..+..+.+.....+.+++..
T Consensus 62 ~ld~~~--~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 62 EIDSTT--QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp ECCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred EEcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 344455555555555555555555444444444433
No 84
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=48.28 E-value=28 Score=20.69 Aligned_cols=30 Identities=13% Similarity=0.002 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 169 RKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
..++|+.++.+-..-..++.+|.+|+.-|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 346777778877777888888888877654
No 85
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.85 E-value=84 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029028 164 EALKRRKSYADNANALKAQLDQQ 186 (200)
Q Consensus 164 ~AL~rk~~~e~~a~~lq~qld~~ 186 (200)
.....+..++..+..++.+++..
T Consensus 101 ~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 101 ELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444443
No 86
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.67 E-value=15 Score=22.28 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 169 RKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..++|+.++.+-..-..++.+|.+|+..+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34566666666666666666666666544
No 87
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=47.58 E-value=84 Score=23.35 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=22.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 029028 150 AQLALQKGEEDLAREALKRRKS----YADNANALKAQLDQ 185 (200)
Q Consensus 150 A~~AL~~G~EDLAr~AL~rk~~----~e~~a~~lq~qld~ 185 (200)
|..+....-||+=+.++.++.. +++.+.+++.++..
T Consensus 61 Ae~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 61 AEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888877643 44444444444443
No 88
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=46.86 E-value=91 Score=23.53 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 169 RKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
.+.|++....|+..+..++..|+..
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666554
No 89
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=46.48 E-value=1e+02 Score=24.04 Aligned_cols=84 Identities=10% Similarity=0.196 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA--SEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~--i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a 176 (200)
||...|+..++.++....+..+.+.+.....++++.+++.+... .+.-.-.|..++..- ....+......++
T Consensus 7 ~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~r------k~~~~l~~~~a~l 80 (179)
T 2gd5_A 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR------KAVSKLYASKAHM 80 (179)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 77777888888888888888888888888888888888776553 222233566666653 3455566666666
Q ss_pred HHHHHHHHHHHH
Q 029028 177 NALKAQLDQQKN 188 (200)
Q Consensus 177 ~~lq~qld~~~~ 188 (200)
+.+..+++.+..
T Consensus 81 ~~v~~~lqt~~~ 92 (179)
T 2gd5_A 81 NSVLMGMKNQLA 92 (179)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 90
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.93 E-value=55 Score=26.73 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
+|=+-+++++.++...+..+..+-..+..++.....+++.++.+.
T Consensus 6 ~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql 50 (190)
T 4emc_A 6 VYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQI 50 (190)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666666666555555555543
No 91
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=44.69 E-value=90 Score=22.88 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (200)
Q Consensus 100 P~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~ 139 (200)
....|+.-+..++..+.+....+.........++..+.+.
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544444444444444433
No 92
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=44.03 E-value=1.1e+02 Score=23.76 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 029028 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (200)
Q Consensus 97 ~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~ 174 (200)
..||+-++++ -+.++.|.++... .....++.=..++...+..+......++..++-+-|...+.+..=+..
T Consensus 86 ~~d~~fLme~--me~rE~lee~~~~-----~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~k 156 (171)
T 1fpo_A 86 VRDTAFLMEQ--LELREELDEIEQA-----KDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDK 156 (171)
T ss_dssp CSCHHHHHHH--HHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH--HHHHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 3478755543 2444555555431 112234555566777777888888899999988888887776554433
No 93
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.96 E-value=1.1e+02 Score=23.43 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYANAILSS----FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 77 sif~Rl~~lvra~in~~ldk----~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
.-+.++...|-..+.++-.. .-+..++.=-.=-.+-+++-+++............++.++..+..+....+-+.
T Consensus 28 e~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~-- 105 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKA-- 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 46788888888888887733 224554444444556667777777666555555555555555555444444333
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 153 ALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 153 AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
..+..+++.++..+..++.++.+|.+.+.
T Consensus 106 -----------------e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 106 -----------------ESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666655543
No 94
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=43.93 E-value=1.3e+02 Score=25.48 Aligned_cols=12 Identities=8% Similarity=0.049 Sum_probs=4.7
Q ss_pred cccCccceEEee
Q 029028 41 FFNGGVGALKVT 52 (200)
Q Consensus 41 f~~~~~~~~~~~ 52 (200)
||=+.-..+-|+
T Consensus 116 i~l~~~~lITv~ 127 (339)
T 4ev6_A 116 IYIKNNLLLTIH 127 (339)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCeeEEee
Confidence 333333344443
No 95
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=43.65 E-value=90 Score=22.56 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 169 RKSYADNANALKAQLDQQ 186 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~ 186 (200)
|..||+++..|+.+|+.-
T Consensus 70 Kq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 70 KDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 455666666666666543
No 96
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.50 E-value=42 Score=19.90 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.++|+.++.+-..-..++.+|.+|+.-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555556665555556666666666544
No 97
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=43.33 E-value=89 Score=26.00 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKR 131 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~ 131 (200)
.+.+++.++..++..+..+.....+
T Consensus 77 ~l~~~~a~l~~a~~~~~~a~~~~~r 101 (341)
T 3fpp_A 77 TLMELRAQRQQAEAELKLARVTYSR 101 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333
No 98
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=43.23 E-value=1.6e+02 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 162 Ar~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+.+...+...+.+++..+++++.+.+..+..+-
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777776666543
No 99
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=43.10 E-value=41 Score=20.09 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
|..++|+..+.+=..-..++.+|.+|+.-|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3456777777777777777777777776654
No 100
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=42.98 E-value=1.1e+02 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 158 EEDLAREALKRRKSYADNANALKAQLD 184 (200)
Q Consensus 158 ~EDLAr~AL~rk~~~e~~a~~lq~qld 184 (200)
|+++...|..+...++.+++.++..+.
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~l~ 93 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKELE 93 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777777777666665544
No 101
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=42.75 E-value=40 Score=20.14 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
|..++|+.++.+-..-..++.+|.+|+.-+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345566666666666666666666666544
No 102
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=42.75 E-value=27 Score=30.05 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=36.7
Q ss_pred cccCcHHHHHHHHHHHHHH---HHhhc-------------cC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 73 NTRMNLFDRLARVVKSYAN---AILSS-------------FE---DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLE 133 (200)
Q Consensus 73 ~~~Msif~Rl~~lvra~in---~~ldk-------------~E---DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le 133 (200)
+||.++|+||++-++.... +.+|. +. =-+.-++..++|++..|-++-....-+..-...++
T Consensus 2 ~~~~~mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~ 81 (328)
T 3e70_C 2 SHMASMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIK 81 (328)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5788999999999986555 33311 11 12466778899999988887655544444444444
Q ss_pred HHH
Q 029028 134 NKC 136 (200)
Q Consensus 134 ~k~ 136 (200)
.++
T Consensus 82 ~~~ 84 (328)
T 3e70_C 82 QKL 84 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 103
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=42.55 E-value=81 Score=21.70 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
-++..|-+++.++.+++..++....+.+.+-.-.-.++.+|..|.
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777766666665555554455555555554
No 104
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=42.12 E-value=93 Score=22.29 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~w 146 (200)
.-++..|.+++.++.+++..++........+-.-.-.+..+|..|
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554444433333333344444443
No 105
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=41.85 E-value=41 Score=20.11 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
|..++|+.++.+-..-..++.+|.+|+.-|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 345566666666666666666666666544
No 106
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=41.84 E-value=1.9e+02 Score=25.86 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
.++++...++.+.+............+|...-.+.+....+...|
T Consensus 132 K~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a 176 (486)
T 3haj_A 132 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS 176 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666777777777777777776666666665555555
No 107
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.38 E-value=1.1e+02 Score=23.09 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 164 EALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 164 ~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk 194 (200)
+.-.++..+...+....+.++++......|.
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 3344555555555666666666655555444
No 108
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=41.11 E-value=1e+02 Score=27.94 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDL 115 (200)
Q Consensus 102 ~mLdQ~IReme~~l 115 (200)
.-..++|..|++.+
T Consensus 55 s~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 55 SEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 34444444444433
No 109
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=40.99 E-value=73 Score=20.74 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
+..|.+++.++.+++..++....+.+.+-.-.-.++.+|..|.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455567777777777777776666555555555556665554
No 110
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=40.85 E-value=1.5e+02 Score=24.33 Aligned_cols=84 Identities=11% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 029028 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE--DWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (200)
Q Consensus 98 EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~--~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~ 175 (200)
.||...+...=|.++....+..+.+.++....++++.+++.+.+.-+ .-.-.|+.++.. |....+......+
T Consensus 6 ~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~------Rk~~~rl~~~kaq 79 (218)
T 3frt_A 6 KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRS------RKAVSKLYASKAH 79 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 36777777666666666666666777777777777777766655422 222333444433 5566677777777
Q ss_pred HHHHHHHHHHHH
Q 029028 176 ANALKAQLDQQK 187 (200)
Q Consensus 176 a~~lq~qld~~~ 187 (200)
+..+.-++..+.
T Consensus 80 L~sV~~rlqt~~ 91 (218)
T 3frt_A 80 MNSVLMGMKNQL 91 (218)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
No 111
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=40.23 E-value=1.4e+02 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=9.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH
Q 029028 96 SFEDPEKILEQAVLEMNDDLVKMRQ 120 (200)
Q Consensus 96 k~EDP~~mLdQ~IReme~~l~kar~ 120 (200)
.+++++ ++..+.+++.++..++.
T Consensus 52 ~ld~~~--~~~~l~~a~a~l~~a~a 74 (277)
T 2f1m_A 52 QIDPAT--YQATYDSAKGDLAKAQA 74 (277)
T ss_dssp EECCHH--HHHHHHHHHHHHHHHHH
T ss_pred EECcHH--HHHHHHHHHHHHHHHHH
Confidence 444554 22333444444444433
No 112
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.99 E-value=2.1e+02 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.....++..+..++..++.++..+.+|....
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4445555556666666666666666665543
No 113
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.96 E-value=1.2e+02 Score=23.05 Aligned_cols=50 Identities=4% Similarity=0.124 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
..-|++.|.+++..+...+..+....-....+++++.++.+++..++.+.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566665666666666665555555555555555555555555443
No 114
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.28 E-value=1e+02 Score=21.91 Aligned_cols=8 Identities=50% Similarity=0.663 Sum_probs=3.7
Q ss_pred cHHHHHHH
Q 029028 77 NLFDRLAR 84 (200)
Q Consensus 77 sif~Rl~~ 84 (200)
++=+||..
T Consensus 13 ~LNdRlAs 20 (93)
T 3s4r_A 13 ELNDRFAN 20 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34445543
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.99 E-value=2e+02 Score=25.25 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029028 170 KSYADNANALKAQLDQQ 186 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~ 186 (200)
+.++..+..+..+++..
T Consensus 452 ~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 452 ARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHhc
Confidence 33333333333333333
No 116
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=38.58 E-value=1.8e+02 Score=24.56 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
++++.+.++.+.+..........+.+|...-.+++..+
T Consensus 140 ~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~ 177 (350)
T 3aco_A 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAI 177 (350)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555455544444444333
No 117
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=38.58 E-value=1.1e+02 Score=22.29 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~r 149 (200)
|++.|......+..++..+............+.+.++...++|...
T Consensus 79 L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~ 124 (150)
T 3ajw_A 79 LEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAA 124 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 118
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=38.35 E-value=56 Score=23.67 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 168 RRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 168 rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
+..++...++.++..+-.++.....+
T Consensus 63 ~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 119
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=38.34 E-value=1.5e+02 Score=25.42 Aligned_cols=14 Identities=0% Similarity=0.325 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDL 115 (200)
Q Consensus 102 ~mLdQ~IReme~~l 115 (200)
.-++..|.++++++
T Consensus 198 ~~l~~~id~lE~~v 211 (363)
T 2iub_A 198 EKIDDEIDVLEEEV 211 (363)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555555444
No 120
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=37.95 E-value=2.6e+02 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQK 130 (200)
Q Consensus 99 DP~~mLdQ~IReme~~l~kar~~lA~v~A~~k 130 (200)
.|+...+-.+.+++.+|.++.+.+|+..-.+.
T Consensus 314 hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 314 HPVEAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666555555544333
No 121
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=37.93 E-value=2.2e+02 Score=25.43 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLV 116 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~ 116 (200)
+..+.+.+...+..++..-.+|+..|++...++++.+.
T Consensus 336 ~~~i~~~l~~~l~~vl~G~~tpeeAl~~~~~~~~~~l~ 373 (494)
T 1y4c_A 336 MSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSNNN 373 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 45666777777777777767888777776666554443
No 122
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.85 E-value=2.3e+02 Score=26.54 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
++|+|..+++++.+..=+++..+-+.+-+. ++.+-.+..-.-++++...--+..++|.++. +++++..++.
T Consensus 504 ~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~---kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~ 574 (592)
T 1f5n_A 504 KMLHEMQRKNEQMMEQKERSYQEHLKQLTE---KMENDRVQLLKEQERTLALKLQEQEQLLKEG------FQKESRIMKN 574 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHHHHHH
Q 029028 182 QLDQQKNV 189 (200)
Q Consensus 182 qld~~~~~ 189 (200)
+++.++..
T Consensus 575 ei~~l~~~ 582 (592)
T 1f5n_A 575 EIQDLQTK 582 (592)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
No 123
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=37.08 E-value=67 Score=28.21 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 172 YADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 172 ~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
...-+..++..++...+.|.+|+.+|
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~~ 402 (463)
T 2xz3_A 377 LTSLIHVLEQDQQRLITAINQTHYNL 402 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666666666666666655
No 124
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=36.17 E-value=64 Score=18.71 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 171 SYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 171 ~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+|+++..++.-...+++.++.|...+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777654
No 125
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.02 E-value=69 Score=22.19 Aligned_cols=29 Identities=10% Similarity=-0.013 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
+-.++.++.|...+.++..++++|+..++
T Consensus 24 AfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 24 SFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555565666666666666555543
No 126
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=36.00 E-value=15 Score=29.70 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCC
Q 029028 119 RQATAQVLASQKRLENKCKAAEQASED--WYRKAQLALQKGE 158 (200)
Q Consensus 119 r~~lA~v~A~~k~le~k~~~~~~~i~~--we~rA~~AL~~G~ 158 (200)
|+.+++..-.+++.+++.+..++++++ |.+.|..||+.++
T Consensus 6 ~~~~~~~~k~~~~~~r~~~~a~~~~~~~~~f~~A~qaies~~ 47 (176)
T 3fyf_A 6 RKQREDAKREAWKKERQEKKALEAQQDSVSYVQAINALKNGS 47 (176)
T ss_dssp ---------CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence 444455555555666666666666666 8888888888764
No 127
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=35.97 E-value=1.4e+02 Score=22.51 Aligned_cols=89 Identities=9% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCC------------------------
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRL---ENKCKAAEQASEDWYRKAQLALQKGE------------------------ 158 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~l---e~k~~~~~~~i~~we~rA~~AL~~G~------------------------ 158 (200)
+.+.++.+.+.+.+..+.........+ +.++.++...++.++.--. .|.
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~----~~~~ilvplg~~~yv~g~i~~~~~V~v 84 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE----EKPEILVPIGAGSFLKGVIVDKNNAIV 84 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----SSCEEEEECSSSCEEEEECSCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCceEEEEcCCCeEEEEEECCCCEEEE
Confidence 345556666666666666677777777 7777777777776542110 222
Q ss_pred -----------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 159 -----------EDLAREALKR-RKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 159 -----------EDLAr~AL~r-k~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
-+=|.+.+.+ +..++..++.++.+++..+..+..+...|+
T Consensus 85 ~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 85 SVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp EEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445555554 455677777777777777777776666554
No 128
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=35.93 E-value=1.4e+02 Score=22.52 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 128 ~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
..+.++.++......++.....+..-+..|-. ........+..+....+.+......=+..
T Consensus 96 kH~afe~El~a~~~~~~~l~~~g~~Li~~~~~--------~~~~I~~rl~eL~~~W~~L~~~~~~R~~~ 156 (161)
T 3lbx_A 96 KHQSLEAEVQTKSRLMSELEKTREERFTMGHS--------AHEETKAHIEELRHLWDLLLELTLEKGDQ 156 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCT--------THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333333 12334455555555555555555444333
No 129
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=35.39 E-value=79 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQA-TAQVLASQKRLENKCKA 138 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~-lA~v~A~~k~le~k~~~ 138 (200)
-|++.-++++.++.+.-.. =.++..-...||++|+.
T Consensus 238 ~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~yD~ 274 (325)
T 3e35_A 238 SLRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQYDA 274 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 3333333344333333333 33344444444444443
No 130
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=35.17 E-value=69 Score=19.97 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 164 EALKRRKSYADNANALKAQLDQQKNVVN 191 (200)
Q Consensus 164 ~AL~rk~~~e~~a~~lq~qld~~~~~ve 191 (200)
+.=.+...+|+++..++..++.+...+.
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666655555555443
No 131
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=34.96 E-value=1.2e+02 Score=21.48 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVL---ASQKRLENKCKAAEQASED-WYRKAQLALQ 155 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~---A~~k~le~k~~~~~~~i~~-we~rA~~AL~ 155 (200)
.-++..+.|+++-|.++.-.+-.+. +.+..+..++..++..+++ |....+..+.
T Consensus 37 ~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 37 KHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455666666666666666665551 4566777777777777777 7777666554
No 132
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=34.94 E-value=1.2e+02 Score=25.04 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=36.8
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 75 RMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA 121 (200)
Q Consensus 75 ~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~ 121 (200)
....+..+.+++...+.+++..-.+|+..|++...++++.|.+..+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~g~~t~e~al~~~~~~~~~~L~~y~k~ 416 (419)
T 4aq4_A 370 RLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKS 416 (419)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888887899988888887777777766543
No 133
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=34.89 E-value=2.8e+02 Score=25.68 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDD 114 (200)
Q Consensus 77 sif~Rl~~lvra~in~~ldk~EDP~---~mLdQ~IReme~~ 114 (200)
+++.+-.+=++-.|+++=+.+.|=. .-..+|++.+-+-
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~ 94 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINI 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4677777777777666655555432 4555565555433
No 134
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=34.72 E-value=78 Score=20.02 Aligned_cols=29 Identities=10% Similarity=0.368 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 101 EKILEQAVLEMNDDLVKMRQATAQVLASQ 129 (200)
Q Consensus 101 ~~mLdQ~IReme~~l~kar~~lA~v~A~~ 129 (200)
+++=+..+.|++.++++++..+..++-..
T Consensus 10 e~~KqEIL~E~RkElqK~K~EIIeAi~~E 38 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVKEEIIEAFVQE 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778899999999999998887654
No 135
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=34.67 E-value=69 Score=19.09 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 169 RKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..++++.++.+-.....++.+|.+|+.-|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45566666666666666666666666543
No 136
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=34.45 E-value=90 Score=27.36 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 130 KRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 130 k~le~k~~~~~~~i~~we~rA~~A 153 (200)
++..++++++.++++.++++...|
T Consensus 277 ~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 277 KKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666655
No 137
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.44 E-value=1.8e+02 Score=25.78 Aligned_cols=15 Identities=0% Similarity=0.392 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQA 121 (200)
Q Consensus 107 ~IReme~~l~kar~~ 121 (200)
.|++++++..+....
T Consensus 11 ~~~~l~~~~~~l~~~ 25 (403)
T 4etp_A 11 KIAALKEKIAALKEK 25 (403)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 138
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=33.91 E-value=76 Score=31.81 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC--HHHH-H-HHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLE---NKCKAAEQASEDWYRKAQLALQKGE--EDLA-R-EALKRRKSYAD 174 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le---~k~~~~~~~i~~we~rA~~AL~~G~--EDLA-r-~AL~rk~~~e~ 174 (200)
..|++.-..++....+-.+.|-..+..+.+++ ++...-....+.|-...+..|..++ .||+ - ..+.+...++.
T Consensus 854 ~dL~~~W~~Le~ae~eRe~~L~~el~Rqe~L~~L~qkF~rka~~~e~Wl~ek~~~l~s~d~g~dL~~Vqal~KKhea~e~ 933 (1010)
T 1g8x_A 854 NEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDG 933 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSCCSCCSTTTTGGGTTSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888877777776 5566666667777777777777654 1222 2 22244445555
Q ss_pred HHHHHHHHHH-HHHHHHHHH
Q 029028 175 NANALKAQLD-QQKNVVNNL 193 (200)
Q Consensus 175 ~a~~lq~qld-~~~~~ve~L 193 (200)
++..++..+. +.....++|
T Consensus 934 dl~a~e~ri~~~l~~~a~eL 953 (1010)
T 1g8x_A 934 ECQSLEGQSNSDLLSILAQL 953 (1010)
T ss_dssp TTTHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 5555555544 444444444
No 139
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=33.86 E-value=89 Score=23.91 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=40.2
Q ss_pred CCcccccCCCcccccCcHHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHH
Q 029028 61 RSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFE--DPEKILEQAVLEMNDDLVKM 118 (200)
Q Consensus 61 ~~~~~~~~~~~~~~~Msif~Rl~~lvra~in~~ldk~E--DP~~mLdQ~IReme~~l~ka 118 (200)
++.=|+|-++-.+....++.+...-+...+...++... ||...|...++.+-+.+.+-
T Consensus 78 ~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 137 (236)
T 3q0w_A 78 RPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSH 137 (236)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHcC
Confidence 44456666666566667788888888888887777766 88877777777666655443
No 140
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=33.59 E-value=1.9e+02 Score=23.40 Aligned_cols=61 Identities=8% Similarity=-0.069 Sum_probs=37.2
Q ss_pred HhhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 93 ILSSFEDPEKI----LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 93 ~ldk~EDP~~m----LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
+.+.+.+|-.. .++.-...++...++.+.+..+.........+|...-.+++....+...|
T Consensus 92 L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a 156 (301)
T 2efk_A 92 LSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERL 156 (301)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455556422 23333445566677777777777777777777777777766666655554
No 141
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=33.58 E-value=75 Score=28.73 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 029028 143 SEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (200)
Q Consensus 143 i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~ 174 (200)
-..|..-|+.|++.|+-++|..+..+..++..
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~ 712 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLES 712 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhh
Confidence 46899999999999999999999998766654
No 142
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.32 E-value=96 Score=20.03 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029028 174 DNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~L 193 (200)
.++..|..+++++...|..|
T Consensus 11 s~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 143
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=33.27 E-value=78 Score=24.59 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=39.5
Q ss_pred CCcccccCCCcccccCcHHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHH
Q 029028 61 RSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFE--DPEKILEQAVLEMNDDLVK 117 (200)
Q Consensus 61 ~~~~~~~~~~~~~~~Msif~Rl~~lvra~in~~ldk~E--DP~~mLdQ~IReme~~l~k 117 (200)
++.=|+|-++-.+....++.++..-+...+...++... ||...|...++..-+.+.+
T Consensus 77 ~~tlY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 135 (255)
T 3g1o_A 77 RPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGS 135 (255)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 33445566666555666788888878888888777766 8987777777766665544
No 144
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=33.17 E-value=30 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111 (200)
Q Consensus 77 sif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IRem 111 (200)
++|+|+++++++..+.+ .-+--|.-++.--|..+
T Consensus 2 ~~WErVk~ilks~l~a~-S~iPGPVG~~asGi~~l 35 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAAA-SNIPGPIGVAASGISGL 35 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhHHHH
Confidence 58999999999988754 45566766655444443
No 145
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=33.11 E-value=31 Score=21.74 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111 (200)
Q Consensus 77 sif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IRem 111 (200)
++|+|+++++++..+.+ ..+--|.-++.--|..+
T Consensus 2 ~mWErVk~ilks~l~~a-S~iPGPVG~~asGi~gl 35 (44)
T 1nov_D 2 TFWERVRSILKSGLNFA-STIPGPVGVAATGIKGI 35 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhHHHH
Confidence 58999999999987654 45556766555444433
No 146
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.72 E-value=91 Score=20.58 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..++.++..|+..-..+...++.|+..+
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666554
No 147
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=32.52 E-value=84 Score=22.99 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 89 ~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
.+..++.++|+++.-|++.|... .+-+...+..+..++.++.+++.+.
T Consensus 38 eLEeIV~~LE~gel~LEesl~ly-----------eeG~~L~k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 38 ELESLVSAMENGTLPLEQSLSAY-----------RRGVELARVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666655555544443 3344455566666666777666663
No 148
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=32.19 E-value=1.1e+02 Score=23.31 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLA--------REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 132 le~k~~~~~~~i~~we~rA~~AL~~G~EDLA--------r~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
++.++.+++..+..++..+...-..+.+|.- ..-|..+..--..+..++..++.++..|.+|...+.
T Consensus 11 l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544433333333222 222333333333345666677777777777766654
No 149
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=31.90 E-value=2.8e+02 Score=24.77 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~l 179 (200)
.+|.-.+.+.+..+.++. .++.--.-..++++-++..... -|-.+-..-...|-|+|-+.||+..+++..++..+
T Consensus 390 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (494)
T 1y4c_A 390 ELLKIALQEAQKTLQQAQ-ELAKKGGGEEQLKRALKRADRN--LWAAQELAKKGGGGEELLKQALQQAQQLLRQAQEL 464 (494)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHSSCCHHHHHHHHHHHHHH--HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHccCcHHHHHHHHHhhhhh--hHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777766654 3333333344455544443332 23222111122345777777777776666665554
No 150
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=31.80 E-value=1.5e+02 Score=21.64 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~ 140 (200)
|...++...++.-..+....+.|+.++.++.
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555544
No 151
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.78 E-value=1.4e+02 Score=21.23 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=22.1
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQ 124 (200)
Q Consensus 74 ~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~ 124 (200)
+.|.-+++=-..++-....++|+++ .+++.+.+.++...++...+..
T Consensus 2 ~~md~iKkKm~~lk~e~e~a~d~ae----~~e~~~k~~e~~~~~~E~ei~s 48 (101)
T 3u59_A 2 ASMEAIKKKMQMLKLDKENAIDRAE----QAEADKKQAEDRCKQLEEEQQG 48 (101)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHH
Confidence 3454444444555655555555433 3333344444444444444444
No 152
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=31.25 E-value=1.9e+02 Score=22.66 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCHH
Q 029028 79 FDRLARVVKSYANAILSSFEDPE 101 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP~ 101 (200)
|.....-+...+..+...+.+|+
T Consensus 54 ~~~~l~~~~~~l~~~~~~~~~~~ 76 (258)
T 2yfa_A 54 TLAKLDAFSKQQAYLATTFKSPE 76 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Confidence 44444445566666777777775
No 153
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.19 E-value=1.5e+02 Score=26.47 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhhhh
Q 029028 182 QLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 182 qld~~~~~ve~Lk~~l~ 198 (200)
....+-..+.+|+.+|+
T Consensus 46 ~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 46 ERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHhCCCEE
Confidence 33334444444444443
No 154
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.60 E-value=2.8e+02 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
.....++.++..+...+...++.+...+.++.
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~ 395 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhc
Confidence 44444445555555555555554444444433
No 155
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.48 E-value=1.1e+02 Score=19.81 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
.+...++.+-..|..++..+..++..|+..|
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666667777777777766544
No 156
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=30.33 E-value=1.2e+02 Score=20.17 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 029028 126 LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (200)
Q Consensus 126 ~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDL 161 (200)
......|...+..+. ..|+..|..+....-+.+
T Consensus 29 ~~~l~~L~~~v~~L~---~~W~G~a~~af~~~~~~~ 61 (99)
T 3zbh_A 29 TELIARLDQMSHTLQ---GIWEGASSEAFIQQYQEL 61 (99)
T ss_dssp HHHHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hhccChHHHHHHHHHHHH
Confidence 333344444444443 368888877766544443
No 157
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.27 E-value=1.3e+02 Score=20.42 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 159 EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
-+.-+.|..=+..++.+...++.+++.+......|+..|.
T Consensus 39 ~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 39 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888888888888888888888877664
No 158
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=30.24 E-value=1.7e+02 Score=21.88 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL 154 (200)
|+-.|+..++.|..+++++ ...-..+..+++..|.+|..-++.|+
T Consensus 12 L~~~i~~l~~~L~~lkqa~------k~~~~~~~~eL~~LI~KWr~asq~aa 56 (122)
T 3viq_A 12 LEKEVRNLQEQLITAETAR------KVEAKNEDKDLQTLIQKWKNAAQQAA 56 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554433 22333445678888999988888775
No 159
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=30.15 E-value=1.9e+02 Score=22.35 Aligned_cols=36 Identities=6% Similarity=0.195 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029028 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (200)
Q Consensus 136 ~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~ 171 (200)
+.+....+.+.-..+..|+..++.++|++.......
T Consensus 123 l~~m~~~v~~ml~~a~~a~~~~d~~~a~~v~~~d~~ 158 (227)
T 1t72_A 123 INFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDT 158 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444455555666677777777777666554433
No 160
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.10 E-value=1.5e+02 Score=25.84 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
.|.+++.+....+..+......|+..++.++..+++++.
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444555555444444444433
No 161
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=30.02 E-value=2.2e+02 Score=22.98 Aligned_cols=49 Identities=6% Similarity=-0.110 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~ 155 (200)
......+...++.+.+..+..........|...-.+.++.+.+...|-.
T Consensus 117 ~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~ 165 (305)
T 2efl_A 117 ERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA 165 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344566667777777787777788888888887777777776665543
No 162
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.56 E-value=1.6e+02 Score=21.42 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHHHHHHHHHHH
Q 029028 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE------------DLAREALKRRKSYADNANALK 180 (200)
Q Consensus 113 ~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~E------------DLAr~AL~rk~~~e~~a~~lq 180 (200)
+++..+++.+.....+..+|.++++.++.++ ...--.|+. ..|-.|.+. .+..++.|+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-------e~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~---~~~~~e~Lq 81 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL-------ERRALQGDYDQSRTKVLHMSLNPTSVARQR---LREDHSQLQ 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHSSCCSCCCTTTEEEEEESSCHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhccccCCccCeeeeecCChHHHHHHH---HHHHHHHHH
Confidence 3555666666555555555555555555444 333345663 455555443 246666666
Q ss_pred HHHHHHHHHHHHH
Q 029028 181 AQLDQQKNVVNNL 193 (200)
Q Consensus 181 ~qld~~~~~ve~L 193 (200)
+.++.+...+..|
T Consensus 82 ~E~erLr~~v~~l 94 (100)
T 1go4_E 82 AECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 163
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=29.39 E-value=2.4e+02 Score=23.20 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 109 Reme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
+++++.+.++.+.+..........+.+|...-.+++....+...+
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~ 183 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS 183 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777777777777777788877777777776655444
No 164
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.29 E-value=1.5e+02 Score=20.86 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029028 126 LASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (200)
Q Consensus 126 ~A~~k~le~k~~~~~~~i~~we~rA~~AL~~ 156 (200)
....+.++.++..+...+++|+......+..
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344555666666666666666666665543
No 165
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=29.27 E-value=2.4e+02 Score=23.14 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
++.+...++..+..++..+..+...++.|++
T Consensus 163 a~k~~e~ie~dL~~~e~~i~~l~~~a~~L~~ 193 (235)
T 2odv_A 163 VPQRAGEVERDLDKADSMIRLLFNDVQTLKD 193 (235)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777777777777777777754
No 166
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=29.21 E-value=41 Score=26.90 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 029028 142 ASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (200)
Q Consensus 142 ~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~ 175 (200)
....|.+-+..||..|+-++|..+..+..++..-
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L 66 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHSFDKL 66 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHH
Confidence 4669999999999999999999999998777655
No 167
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=29.19 E-value=1.6e+02 Score=21.28 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029028 177 NALKAQLDQQKNVVNNLV 194 (200)
Q Consensus 177 ~~lq~qld~~~~~ve~Lk 194 (200)
+.++.++..+..++.+|+
T Consensus 71 e~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 71 EYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp SHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 168
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.98 E-value=1.1e+02 Score=19.28 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~ 139 (200)
++.-+..++..++-...-+|+.+++....+.+++.-
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777776666665555443
No 169
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=28.38 E-value=54 Score=21.02 Aligned_cols=32 Identities=16% Similarity=0.425 Sum_probs=15.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQAT 122 (200)
Q Consensus 91 n~~ldk~EDP~~mLdQ~IReme~~l~kar~~l 122 (200)
..++.++|+...-|+.-|-.++.++....+.+
T Consensus 23 enivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 33444444445555555555555555444443
No 170
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=28.12 E-value=2e+02 Score=22.04 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=13.0
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 99 DPE-KILEQAVLEMNDDLVKMRQATAQV 125 (200)
Q Consensus 99 DP~-~mLdQ~IReme~~l~kar~~lA~v 125 (200)
||. .-+-..+.++.-.+.++-..+...
T Consensus 86 d~~l~~~~e~l~~a~~~l~d~~~~L~~y 113 (175)
T 4abx_A 86 DETVMQLQNELRAALESVQAIAGELRDV 113 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 334444445555555555544443
No 171
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.09 E-value=1.3e+02 Score=22.64 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLV 116 (200)
Q Consensus 103 mLdQ~IReme~~l~ 116 (200)
+|++.+.++++++.
T Consensus 85 ~L~~~~~~l~~~i~ 98 (142)
T 3gp4_A 85 LLKKQRIELKNRID 98 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34443333333333
No 172
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=28.06 E-value=1.6e+02 Score=20.68 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 029028 128 SQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKS----YADNANALKAQLDQ 185 (200)
Q Consensus 128 ~~k~le~k~~~~~~~i~~we~---rA~~AL~~G~EDLAr~AL~rk~~----~e~~a~~lq~qld~ 185 (200)
.-+.++.+++..+.+...-.+ .|..+....-|++=+.++.++.. +++.+.+++.++..
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333222 35556788889998888887753 44444444444443
No 173
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.70 E-value=72 Score=24.65 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (200)
Q Consensus 111 me~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~v 190 (200)
.+..+.+....+..-.+.+...|.+...++.+++++...-= ...+ .+...|=.....++.....++.++.+-+..+
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF---eEAN-~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF---DEAN-NLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH---HHHH-HHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555555555555442211 0001 1112233334455555566666666555555
Q ss_pred HHHHhhh
Q 029028 191 NNLVSNT 197 (200)
Q Consensus 191 e~Lk~~l 197 (200)
+.|...|
T Consensus 120 ~~lq~QL 126 (135)
T 2e7s_A 120 DTLTLQL 126 (135)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5554443
No 174
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.62 E-value=1.4e+02 Score=24.96 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
-+.|+++.+.++...+..........+.++..++..+.++.++.+.+
T Consensus 7 Rvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~ 53 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRP 53 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35566667777777777777777777888888888888888887643
No 175
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=27.34 E-value=1.2e+02 Score=26.56 Aligned_cols=107 Identities=7% Similarity=-0.015 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQAT--AQVLASQKR--LENKCKAAEQASEDWYRKAQLAL 154 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~l--A~v~A~~k~--le~k~~~~~~~i~~we~rA~~AL 154 (200)
+..+.+.+...+.+++..-.+|+..|++...++++.+.+.+.-- ...-..-.. +..-+..+......=..+.+.++
T Consensus 351 ~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~d~~~i~~~~ 430 (477)
T 2vgq_A 351 MSAFWYAVRTAVINAASGRQTVDEALKDAQTNSAMAFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATC 430 (477)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTCCHHHHGGGCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccccccHHHhhccCccCcHHHHHHHHHHH
Confidence 44555666666677776666888877777777666655432110 000000001 11111122222222233333443
Q ss_pred h-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 155 Q-KGEEDLAREALKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 155 ~-~G~EDLAr~AL~rk~~~e~~a~~lq~qld~ 185 (200)
+ .|..+=|++.+.+....++-.+.+...++.
T Consensus 431 ~~~~~~~~a~~~~~~~~~~~~w~~~~~~~l~~ 462 (477)
T 2vgq_A 431 TLSGNRDTLWHLFNTLQRRPGWVEYFIAALRG 462 (477)
T ss_dssp HHHCHHHHHHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHhhCCChHHHHHHHHHH
Confidence 3 345666677777777777777777777766
No 176
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=27.21 E-value=2.8e+02 Score=23.30 Aligned_cols=110 Identities=10% Similarity=0.056 Sum_probs=55.0
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 73 ~~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
+..+.||+...+ ++.+...--..+--..-+++..+++..++..+-.. ....+.+++ -..+....+++..+.++.
T Consensus 320 ~l~~plf~gg~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~v~~a~~~---~~~~~~~~~-~~~~~~~~a~~~~~~~~~ 393 (446)
T 3pik_A 320 KIEIPIFNAGRN--QANLDIAEIRQQQSVVNYEQKIQNAFKEVADALAL---RQSLNDQIS-AQQRYLASLQITLQRARA 393 (446)
T ss_dssp EEECCCCCTTHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred heeeeccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345678763221 22222222222223344445555554444444333 333333333 234445566667777788
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 153 ALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (200)
Q Consensus 153 AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~ 188 (200)
..+.|.-++-.-.-.+..-++.+..-++..++-...
T Consensus 394 ~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a 429 (446)
T 3pik_A 394 LYQHGAVSYLEVLDAERSLFATRQTLLDLNYARQVN 429 (446)
T ss_dssp HHHTTSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888998766655555555555555555555544443
No 177
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.90 E-value=97 Score=21.08 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKC 136 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~ 136 (200)
.||..+++.+......+.........++.++
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665554444444444444443
No 178
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.88 E-value=63 Score=23.55 Aligned_cols=58 Identities=12% Similarity=-0.063 Sum_probs=40.6
Q ss_pred CCcccccCCCcccccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Q 029028 61 RSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKM 118 (200)
Q Consensus 61 ~~~~~~~~~~~~~~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~ka 118 (200)
++.=|+|-++-.+....++.++..-+...+...++...||...|...++.+-+-+.+-
T Consensus 48 ~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 105 (203)
T 3f1b_A 48 KPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLRRALEGFLGFVGKH 105 (203)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 4445666666666666777777777777777777777789877777777766655443
No 179
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.75 E-value=1.3e+02 Score=19.41 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029028 170 KSYADNANALKAQLDQQKNVVNNLVSN 196 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~Lk~~ 196 (200)
..++.+-..|..++..+..++..|+..
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544443
No 180
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=26.66 E-value=3.4e+02 Score=24.08 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 029028 134 NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (200)
Q Consensus 134 ~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq 180 (200)
..+.++....++.+.--+++-..+|+++...|..+...++..++.++
T Consensus 68 ~~~~~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l~~le 114 (365)
T 1gqe_A 68 DTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLE 114 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445688877777776666666666554
No 181
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=26.63 E-value=2e+02 Score=21.54 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 82 LARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 82 l~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
|.+++-+....++|.-|-.-.+.+..||.+-+++-.-...+........-...=+..++.++.+-..+.
T Consensus 57 FVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdaki 125 (142)
T 1pl5_A 57 FVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKI 125 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHH
Confidence 345666777778888777778888889988888777666666655555444444555555554444433
No 182
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.61 E-value=2.5e+02 Score=22.62 Aligned_cols=57 Identities=9% Similarity=0.071 Sum_probs=26.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 86 VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (200)
Q Consensus 86 vra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (200)
++..++++.+.-..=+..|+..|..++..+.+.+..+............++.....+
T Consensus 29 le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 29 ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333455555555555555555555555544444444444444333
No 183
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.25 E-value=1.4e+02 Score=19.54 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 165 AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
...+...++.+-..|+.+++.++.++..|+.-|.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677777777777777777777776554
No 184
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=26.18 E-value=40 Score=20.65 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=11.2
Q ss_pred cCCHHHHHHHHHHH
Q 029028 97 FEDPEKILEQAVLE 110 (200)
Q Consensus 97 ~EDP~~mLdQ~IRe 110 (200)
-+||..+|.+.+++
T Consensus 9 ~ddP~~lLQ~Llr~ 22 (39)
T 1gng_X 9 DDDPHRLLQQLVLS 22 (39)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 45999999999987
No 185
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.17 E-value=2.7e+02 Score=24.82 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 103 mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
.|+..++++++.+.+..+.+.+..++...++.++.+.+.+-.++++..
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~ 54 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555544444444444443
No 186
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus}
Probab=26.11 E-value=59 Score=26.38 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQV 125 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v 125 (200)
+|-++||..++|+.+..+...|..+...|...
T Consensus 2 ~~p~~d~~~~~E~EL~~aa~aIe~A~~~l~~l 33 (189)
T 2jsw_A 2 IDPFTDPTVIAENELLGAAAAIEAAAKKLEQL 33 (189)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777776666666665554443
No 187
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=25.91 E-value=2.2e+02 Score=21.64 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 029028 129 QKRLENKCKAAEQASEDWYRKAQLALQKGE--EDLAREA-LKRRKSYADNANALKAQLDQ 185 (200)
Q Consensus 129 ~k~le~k~~~~~~~i~~we~rA~~AL~~G~--EDLAr~A-L~rk~~~e~~a~~lq~qld~ 185 (200)
.++|+.+++.......+.-..+..|...|| |+-...+ =.++..++.++..++..++.
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666644555566667777888887 3433222 23344456666666666654
No 188
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.80 E-value=1.6e+02 Score=20.44 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=19.3
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILE---QAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (200)
Q Consensus 102 ~mLd---Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~ 138 (200)
.||. .||.++++..................|..++.+
T Consensus 45 ~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 45 VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 355666666655555555444444444444443
No 189
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.74 E-value=2.4e+02 Score=21.96 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=42.9
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCHHHH
Q 029028 93 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA-------SQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLA 162 (200)
Q Consensus 93 ~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A-------~~k~le~k~~~~~~~i~~we~---rA~~AL~~G~EDLA 162 (200)
+.+.-+|-..-|++-+.+++.++.+-+..+--+-- ...++..+-...++++.++.. -++.-+.+.+-+|+
T Consensus 5 laE~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 5 LVEDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444555555555555555555544433222 122222222222233333311 12223445556666
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 029028 163 REALKRRKSYAD--NANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 163 r~AL~rk~~~e~--~a~~lq~qld~~~~~ve~Lk~ 195 (200)
|.-.+.-++.-+ .+..+++.+.+-...|+.|..
T Consensus 85 rn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~ 119 (167)
T 4gkw_A 85 RNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTE 119 (167)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHH
T ss_pred hhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHH
Confidence 666554433222 233444555444444544443
No 190
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=25.40 E-value=1.3e+02 Score=22.30 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029028 170 KSYADNANALKAQLDQQKNVVNN 192 (200)
Q Consensus 170 ~~~e~~a~~lq~qld~~~~~ve~ 192 (200)
......+..+....+.+....++
T Consensus 120 ~~I~~rl~~l~~~W~~L~~~~~~ 142 (149)
T 3f31_A 120 ETIRTRLMELHRQWELLLEKMRE 142 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556665555554443
No 191
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=25.18 E-value=2.6e+02 Score=22.23 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDL 115 (200)
Q Consensus 104 LdQ~IReme~~l 115 (200)
|+-.+.||.+.+
T Consensus 11 LekQL~E~n~kL 22 (168)
T 3o0z_A 11 LQKQLEEANDLL 22 (168)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 192
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.10 E-value=1.6e+02 Score=19.71 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 105 dQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
|+.|.+=.+.|.+.-..+.++...+.++++++.-++.+=.+++
T Consensus 4 D~~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe 46 (64)
T 3t97_C 4 DRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELE 46 (64)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777776665544443
No 193
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=25.01 E-value=2e+02 Score=20.90 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 029028 150 AQLALQKGEEDLAREALKRRKS----YADNANALKAQLDQQKN 188 (200)
Q Consensus 150 A~~AL~~G~EDLAr~AL~rk~~----~e~~a~~lq~qld~~~~ 188 (200)
|..+....-|++=+.++.++.. +++.+.+++.++...-.
T Consensus 31 A~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 31 AERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556777888888888877643 55555555555555433
No 194
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.78 E-value=1.5e+02 Score=19.20 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
|.+++.++.|......+.........+-.++......+.+.+..+..
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~ 48 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVEN 48 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777666666665544
No 195
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=24.75 E-value=1.7e+02 Score=23.78 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=31.9
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k 135 (200)
+.++.||..++++.|.-.-+.+.+.+........+..+|.++
T Consensus 142 L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 142 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677889999889999888888877777766666666665554
No 196
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.45 E-value=1.8e+02 Score=20.03 Aligned_cols=54 Identities=20% Similarity=0.110 Sum_probs=35.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
+..+|.-+.-|+..|+++++++...+..-....++.+++-..++---.++.++.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334445567788888888888888887766666666666655554444444443
No 197
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=24.41 E-value=2.5e+02 Score=24.19 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA 127 (200)
Q Consensus 79 f~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A 127 (200)
+..+.+.+...+.+++..-.||+..|++...++++.+...+++-.+.+.
T Consensus 338 ~~~~~~~~~~~~~~~~~G~~t~eeal~~~~~~~~~~l~~l~~e~~~C~~ 386 (475)
T 3n94_A 338 MSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAAEFAIFKKEQAMCLE 386 (475)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777788888887777776666655554444433
No 198
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=24.32 E-value=2.1e+02 Score=20.84 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCCcccccCCCcccccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 029028 60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK 117 (200)
Q Consensus 60 ~~~~~~~~~~~~~~~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~k 117 (200)
+++--|+|-++-.+....++.++..-+...+...++...+|...|...++.+-+.+..
T Consensus 64 s~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 121 (218)
T 3dcf_A 64 TKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILR 121 (218)
T ss_dssp CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 4556677777776667778888888888888888877778887777777666555544
No 199
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=24.28 E-value=23 Score=22.80 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=3.7
Q ss_pred ccccCccceEE
Q 029028 40 SFFNGGVGALK 50 (200)
Q Consensus 40 ~f~~~~~~~~~ 50 (200)
+|-++++..||
T Consensus 23 ~~t~~~~~ILK 33 (52)
T 3abd_X 23 SFTPRTANILK 33 (52)
T ss_dssp -----CTTEEE
T ss_pred CCCCCcccccc
Confidence 44444466665
No 200
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.07 E-value=1.9e+02 Score=20.37 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 174 DNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 174 ~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
+++..++.+++.-...+..|...|
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555666666666666665554
No 201
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.63 E-value=2e+02 Score=20.33 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029028 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 166 L~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l 197 (200)
..+...++.+-..|+.+++.++.++..|+.-|
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777776654
No 202
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=23.57 E-value=2.5e+02 Score=21.53 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 82 LARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 82 l~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
|.+++-+....++|..|-.-.+.+..||.+-+++-.-...+........-...=+..++.+|.+-..+.
T Consensus 81 FVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdaki 149 (166)
T 1nyh_A 81 FVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKI 149 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHH
Confidence 345566777778887777678888889988888776666666655554444444455555554444433
No 203
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=23.57 E-value=4.7e+02 Score=24.65 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 141 QASEDWYRKAQLALQK----GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 141 ~~i~~we~rA~~AL~~----G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
..+..|=..++.-|.. ++.+-+...+.+...++..+...+..+........+|..
T Consensus 495 ~~~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~ 553 (863)
T 1sjj_A 495 APFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSK 553 (863)
T ss_dssp TTTHHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777766664 345668889999999999998888777666555555543
No 204
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.28 E-value=2e+02 Score=20.32 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 029028 177 NALKAQLDQQKNVVNNLVSNT 197 (200)
Q Consensus 177 ~~lq~qld~~~~~ve~Lk~~l 197 (200)
+.-.......+..|..|.+.|
T Consensus 75 e~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 75 EQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455554443
No 205
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.21 E-value=4.4e+02 Score=24.19 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 169 RKSYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 169 k~~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
+..+...++.+...+..++..|..+..
T Consensus 165 i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 165 LRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455555555555555555555543
No 206
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.05 E-value=1.5e+02 Score=18.89 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 171 SYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 171 ~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
.+..+...++..++.+..+++.|++.|.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666666666666554
No 207
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.60 E-value=1.2e+02 Score=19.31 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 029028 176 ANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 176 a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
++.|+..++.++..+..|...|.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666554
No 208
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.55 E-value=2.3e+02 Score=20.61 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
.-|+....+.+..+.+....+..-.+.+...|.+...++.+++++.
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555666666666666666666666666554
No 209
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.40 E-value=3e+02 Score=21.95 Aligned_cols=36 Identities=6% Similarity=0.093 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~ 139 (200)
+++.+.+..+.+..+++.|..+.....+..++...+
T Consensus 90 lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 90 EEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444
No 210
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.30 E-value=1.5e+02 Score=18.44 Aligned_cols=8 Identities=0% Similarity=0.111 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 029028 116 VKMRQATA 123 (200)
Q Consensus 116 ~kar~~lA 123 (200)
.++-+.++
T Consensus 12 ~kVdrEI~ 19 (42)
T 2l5g_B 12 DRVDREIT 19 (42)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 211
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.25 E-value=3.2e+02 Score=22.19 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=33.6
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (200)
Q Consensus 94 ldk~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~w 146 (200)
+.++.||..++.+.+.=+-+.+..+............+++..++.+.++.+++
T Consensus 113 L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 113 LEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567998776666666666666666666666666666666666665555444
No 212
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.21 E-value=2.3e+02 Score=20.57 Aligned_cols=88 Identities=10% Similarity=0.139 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------------------
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE----------------------------- 158 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~----------------------------- 158 (200)
+.++.+.+.+.+..+.....+...++..+.++...++..+.--. ..|.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~---~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g 79 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG---KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAG 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CTTCEEEEEEETTEEEEEECCSTTEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCC
Confidence 34555566666666666666666666666666666665554211 1222
Q ss_pred ------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 159 ------EDLAREALK-RRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 159 ------EDLAr~AL~-rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
-|=|.+-+. |+..++..++.++.+++....++..+...|+
T Consensus 80 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 80 VAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 144555555 4566788888888888888888887777664
No 213
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=22.18 E-value=3.6e+02 Score=22.87 Aligned_cols=36 Identities=8% Similarity=0.179 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (200)
Q Consensus 110 eme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~ 145 (200)
+.+++-.++.+.++++.+...+.+..|....++.++
T Consensus 116 ~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ek 151 (279)
T 3qwe_A 116 EFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRA 151 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666655554443
No 214
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.14 E-value=2.5e+02 Score=20.89 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (200)
Q Consensus 102 ~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~ 181 (200)
.-|.-..++++++|.+....-...... +..+-.+...++..+..++..+ ..-=.+|=....+-+.....++..|..
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~s-E~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQAS-EILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444333 3333344445555555555443 111123333444444445555555554
Q ss_pred HHHHHHHHHHHH
Q 029028 182 QLDQQKNVVNNL 193 (200)
Q Consensus 182 qld~~~~~ve~L 193 (200)
..++....+.+|
T Consensus 85 ~Re~V~~eL~rL 96 (112)
T 1x79_B 85 SREQVSEELVRL 96 (112)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHHHHHHH
Confidence 444444443433
No 215
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=22.11 E-value=1.9e+02 Score=19.63 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 029028 126 LASQKRLENKCKAAEQAS----EDWYRKAQLALQ 155 (200)
Q Consensus 126 ~A~~k~le~k~~~~~~~i----~~we~rA~~AL~ 155 (200)
......++..+..+...+ ..|+..|..|..
T Consensus 20 ~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~ 53 (101)
T 3fav_A 20 ERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQ 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 333344444444444333 346666665543
No 216
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.10 E-value=1.5e+02 Score=20.53 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029028 130 KRLENKCKAAEQASEDWYRKAQ 151 (200)
Q Consensus 130 k~le~k~~~~~~~i~~we~rA~ 151 (200)
+.++.++..++..+++|+....
T Consensus 82 ~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 82 KTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555443
No 217
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=22.07 E-value=2.7e+02 Score=21.31 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=42.2
Q ss_pred CCCCcccccCCCcccccCcHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q 029028 59 SSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLV 116 (200)
Q Consensus 59 ~~~~~~~~~~~~~~~~~Msif~Rl~~lvra~in~~ldk~EDP~~mLdQ~IReme~~l~ 116 (200)
-+++.-|+|-++-.+....++.++..-+...+.+.++...||...|...++.+-+.+.
T Consensus 78 vs~~t~Y~~F~sKe~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (245)
T 3aqt_A 78 IGTGTFYNYFPDREQLLQAVAEDAFESVGIALDQVLTKLDDPAEVFAGSLRHLVRHSL 135 (245)
T ss_dssp SCGGGGGGTCSSHHHHHHHHHHHHHHHHHHHHHTTGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 3466678888887777777888888777777777777777898777777766655443
No 218
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.59 E-value=2.6e+02 Score=20.94 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 127 ASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 127 A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
...+.|+.-+..++..++++++-...
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666554443
No 219
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=21.48 E-value=69 Score=18.26 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 029028 103 ILEQAVLEMNDDLVKM 118 (200)
Q Consensus 103 mLdQ~IReme~~l~ka 118 (200)
--+|.|.|++..+.++
T Consensus 10 pcdqeikelennirka 25 (31)
T 2wh0_Q 10 PCDQEIKELENNIRKA 25 (31)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3467777777777665
No 220
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.36 E-value=1.7e+02 Score=18.73 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (200)
Q Consensus 114 ~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~ 148 (200)
.+.+++..+..+.+.-.+|..-+.+...++.++..
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554443
No 221
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.21 E-value=1.5e+02 Score=21.08 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029028 171 SYADNANALKAQLDQQKNVVNNLVS 195 (200)
Q Consensus 171 ~~e~~a~~lq~qld~~~~~ve~Lk~ 195 (200)
+++..+..++.+++++..++..+..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555443
No 222
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.20 E-value=1.5e+02 Score=25.19 Aligned_cols=39 Identities=5% Similarity=0.176 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (200)
Q Consensus 108 IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~w 146 (200)
+++++.++..............+.+++++..++++++++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444455555555444443
No 223
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.20 E-value=1.8e+02 Score=18.90 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029028 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (200)
Q Consensus 167 ~rk~~~e~~a~~lq~qld~~~~~ve~Lk~~l~ 198 (200)
.+...++.+-..|+.+++.+..++..|+..|.
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777777777777766553
No 224
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.18 E-value=1.5e+02 Score=22.81 Aligned_cols=88 Identities=13% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHHHHHHHHH
Q 029028 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR-KSYADNANALKAQ 182 (200)
Q Consensus 104 LdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk-~~~e~~a~~lq~q 182 (200)
++..+..+...+.+-+..-..+.....+++.++.++-. .+-..|..=+...+ .++..+.++ ..++.++..-..-
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa---sLFeEAN~MVa~ar--~~~~~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA---SLFDEANNLVADAR--MEKYAIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH---HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHTTTHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567777777777777777777777777766543 34444444443332 233344443 4456666666666
Q ss_pred HHHHHHHHHHHHhh
Q 029028 183 LDQQKNVVNNLVSN 196 (200)
Q Consensus 183 ld~~~~~ve~Lk~~ 196 (200)
++.++.++..||.-
T Consensus 119 l~~lq~QL~~LK~v 132 (135)
T 2e7s_A 119 LDTLTLQLKNLKKV 132 (135)
T ss_dssp C-------------
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666653
No 225
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=21.16 E-value=1.9e+02 Score=19.64 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (200)
Q Consensus 106 Q~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA~~ 152 (200)
+.+++.++.|......+....-....+-.+++.....+++++..+..
T Consensus 12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~ 58 (82)
T 2nps_D 12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELES 58 (82)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555544433
No 226
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.02 E-value=3.5e+02 Score=23.43 Aligned_cols=40 Identities=8% Similarity=-0.056 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (200)
Q Consensus 111 me~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we~rA 150 (200)
++..|......+.........++.++.+++.++..++.+.
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444455566666666666655543
No 227
>3m6j_A Uncharacterized protein; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; 1.90A {Leptospirillum rubarum}
Probab=20.98 E-value=3e+02 Score=21.38 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=26.1
Q ss_pred CCcccccCCCcccccCcHHHHHHHHHHHHHHHHhhccCC
Q 029028 61 RSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFED 99 (200)
Q Consensus 61 ~~~~~~~~~~~~~~~Msif~Rl~~lvra~in~~ldk~ED 99 (200)
+-+|+..+.+. -+.|...+|++.+++.-.+-+++..-|
T Consensus 74 d~~~~~~~~~~-iE~la~~~~lr~iv~~~~~~~v~~y~~ 111 (145)
T 3m6j_A 74 DAQPAHAGSGK-IETISECDRLKNLVRNVTDTLVENYPQ 111 (145)
T ss_dssp -------CCSS-CCSHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred ccccccCCchH-HHHHHHHHHHHHHHHhhHHHHHhcCCC
Confidence 44566555555 567899999999999998889988877
No 228
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.94 E-value=3e+02 Score=21.47 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 029028 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY----RKAQLALQKGEEDLAREALKRR-KSYADNANALKAQLDQ 185 (200)
Q Consensus 111 me~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we----~rA~~AL~~G~EDLAr~AL~rk-~~~e~~a~~lq~qld~ 185 (200)
.+..+.+....+..-.+.+...|.....++.+++++. ..|..=+.. +-.++..+.++ ..++.++..-..-++.
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~--ar~~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD--ARKEKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555554443 334333322 23344444433 3455666666666777
Q ss_pred HHHHHHHHHhhh
Q 029028 186 QKNVVNNLVSNT 197 (200)
Q Consensus 186 ~~~~ve~Lk~~l 197 (200)
++.++..||.-+
T Consensus 134 lq~ql~~LK~v~ 145 (154)
T 2ocy_A 134 LTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 777777777644
No 229
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.93 E-value=2.3e+02 Score=20.08 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (200)
Q Consensus 130 k~le~k~~~~~~~i~~we~rA~~AL~~G~EDLAr~AL~rk~~~e~~a~~lq~qld~~~~~ve~L 193 (200)
..++.++..++.+...++.....+.....+.-+...+.+....-.+...++..-..+-..+..+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665554443355566666666666665555544444444433
No 230
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=20.80 E-value=23 Score=21.92 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHHH
Q 029028 77 NLFDRLARVVKSYAN 91 (200)
Q Consensus 77 sif~Rl~~lvra~in 91 (200)
++|+|+++++++.++
T Consensus 2 ~mWErVk~ilks~l~ 16 (40)
T 1f8v_D 2 KFWEGVLRVLNQISG 16 (40)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHH
Confidence 589999999998754
No 231
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.69 E-value=2.3e+02 Score=19.90 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (200)
Q Consensus 107 ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~ 140 (200)
.+.+....+.+.+...+........++..+..+.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666666666666666666666654
No 232
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.69 E-value=2.2e+02 Score=19.83 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=33.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (200)
Q Consensus 96 k~EDP~~mLdQ~IReme~~l~kar~~lA~v~A~~k~le~k~~~~~~~i~~we 147 (200)
.+|.-+.-|+.-|+.++.++...+..-....++.+++-..++----++.++.
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elR 68 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELR 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444457788888888888888887766666666666665554444444443
No 233
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.06 E-value=2.4e+02 Score=20.00 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029028 129 QKRLENKCKAAEQASEDWYRKAQLA 153 (200)
Q Consensus 129 ~k~le~k~~~~~~~i~~we~rA~~A 153 (200)
+..+..++..++.+++++....+.+
T Consensus 69 R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 69 RGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666555543
Done!