BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029029
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 343 bits (881), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 164/179 (91%), Positives = 172/179 (96%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
AGNK+DLLDARKVTAE+AQ YAQENGLFFMETSAKTATNV +IFYEIA+RLPRVQP N
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 256 bits (653), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 121/173 (69%), Positives = 143/173 (82%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
+ +K KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEI
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WDTAGQERYHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGN
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
KADL + R V EEAQAYA +N L FMETSAKTA NVND+F IAK+LP+ +P
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 174
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
ADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
ADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
ADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 254 bits (649), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
ADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 254 bits (649), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
ADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 254 bits (648), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
ADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 254 bits (648), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1 GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
ADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 250 bits (638), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 139/169 (82%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAP YYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
ADL + R V +EAQ+YA +N L F ETSAKT+ NVN+IF IAK+LP+
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 250 bits (638), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 119/168 (70%), Positives = 139/168 (82%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
NK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWD
Sbjct: 1 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
TAG ERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKA
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
DL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 246 bits (628), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 118/161 (73%), Positives = 134/161 (83%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAG ER
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNKADL R
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
V +EAQAYA +N L FMETSAKTA NVN+IF IAK+LP
Sbjct: 127 AVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 246 bits (628), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 118/160 (73%), Positives = 134/160 (83%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAGQER
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNKADL R
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 124
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
V +EAQAYA +N L FMETSAKTA NVN+IF IAK+L
Sbjct: 125 AVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 243 bits (621), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 117/160 (73%), Positives = 133/160 (83%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTI AAF +QT+ ++D TVKFEIWDTAGQER
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNKADL R
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
V +EAQAYA +N L FMETSAKTA NVN+IF IAK+L
Sbjct: 127 AVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 192 bits (489), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 92/164 (56%), Positives = 117/164 (71%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSS+VLRFV F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-- 129
+ SLAP YYR A AA++VYD+T SF +A+ WV+EL Q + ++++AL GNK D L
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 130 -ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
RKV EE + A+E GL F ETSAKT NVND+F I +++P
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 119/168 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G N+VMA+AGNK DL D R
Sbjct: 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
+V ++A+ YA+ G +ETSAK A N+ ++F I++++P + P N
Sbjct: 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 86/161 (53%), Positives = 115/161 (71%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G P++V+A+AGNK DL D R
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
+V +A+ YA F+ETSAK A N+N++F EI++R+P
Sbjct: 127 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 114/161 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS++ RFV+ F TIGA+F ++T+ + KF IWDTAG ER
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G P++V+A+AGNK DL D R
Sbjct: 68 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
+V +A+ YA F+ETSAK A N+N++F EI++R+P
Sbjct: 128 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 122/200 (61%), Gaps = 4/200 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D T++ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAG ER+ SL P Y R +AAA++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 184
DL D R+V+ EE + A+E + F+ETSAK NV +F +A LP ++ + S
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 187
Query: 185 LMD----RPGERTASASCCS 200
++D +P E+ S CS
Sbjct: 188 MIDIKLEKPQEQPVSEGGCS 207
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 106/160 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD G GKS L+L+F +F + TIG F ++ + ++ +K +IWDTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT + +F W+++ + N NMV+ L GNK+DL R
Sbjct: 72 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
+V EE +A+A+E+GL FMETSAKTA+NV + F AK +
Sbjct: 132 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 111/163 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 141
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
V +EA+A+A++NGL F+ETSA +TNV F I + R+
Sbjct: 142 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 110/163 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y + YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
V +EA+A+A++N L F+ETSA +TNV + F I + R+
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 119/199 (59%), Gaps = 4/199 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAG ER+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 184
DL D R+V+ EE + A+E + F+ETSAK NV +F +A LP ++ + S
Sbjct: 131 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 190
Query: 185 LMD----RPGERTASASCC 199
++D +P E+ S C
Sbjct: 191 MIDIKLEKPQEQPVSEGGC 209
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 21/209 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF K +F +STIG F ++TL + +K +IWDTAGQER
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A+IVYDI+ +S+E W+ EL+ + N+ + L GNK+DL R
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE----IAKRLPRVQ------------ 175
V EE++ +AQEN L F ETSA + NV+ F E I +++ + Q
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNA 194
Query: 176 ---PAPNPSGMVLMDRPGE--RTASASCC 199
APN + L P E + +CC
Sbjct: 195 NGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 107/161 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D T++ ++WDTAGQER
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R +AAA++VYDITN SF++ KW+ +++ + ++++ L GNK DL D R
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
+V+ EE + A+E + F+ETSAK NV +F +A LP
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 168
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 105/162 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD G GKS L+L+F +F + TIG F ++ + ++ +K +IWDTAGQE
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT + +F W+++ + + NMV+ L GNK+DL R
Sbjct: 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
V EE +A+A+E+GL FMETSAKTA NV + F AK + R
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 107/160 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD+G GKS L+ +F + +F+ TIG F ++ + V+ +K +IWDTAGQER
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGAA A++VYDIT ++++ W+ + + NPN V+ L GNKADL R
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
VT EEA+ +A+ENGL F+E SAKT NV D F E AK++
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 108/156 (69%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
V +EA+A+A++NGL F+ETSA +TNV F I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 106/168 (63%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+ SL P Y R + A++VYDITN SF + KW+ +++ + ++++ L GNK
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
DL D R+V+ EE + A+E + F+ETSAK NV +F +A LP
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 104/160 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+S++ RF F +STIG F S+TL +++ V+ ++WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R +AAAI+VYDITN+ SFE KW+Q++ + ++++AL GNK DL D R
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 122
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
KVT EE AQE F ETSAK N+ +F + A +L
Sbjct: 123 KVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK DL D R
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
++T EE + A+E + F+ETSAKT NV +F +A L
Sbjct: 124 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 110/163 (67%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 70 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
V +EA+A+A++NGL F+ETSA +TNV F I + R+
Sbjct: 130 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + + STIG F +T+++ + TVK +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA IIVYD+T++ SF+ K+W+QE+ N+ L GNK DL+ R
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKR 130
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQ 175
VT++E + A +G+ F+ETSAK A NV F+ +A + RVQ
Sbjct: 131 VVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 113/183 (61%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAG ER+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 61 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 184
DL D R+V+ EE + A+E + F+ETSAK NV +F +A LP ++ + S
Sbjct: 121 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 180
Query: 185 LMD 187
++D
Sbjct: 181 MID 183
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 107/156 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
V +EA+A+A++NGL F+ETSA +TNV F I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 106/160 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++GD+G GKS L+ +F + +F+ TIG F ++ + V+ +K +IWDTAGQ R
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGAA A++VYDIT ++++ W+ + + NPN V+ L GNKADL R
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 151
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
VT EEA+ +A+ENGL F+E SAKT NV D F E AK++
Sbjct: 152 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 107/156 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 132
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
V +EA+A+A++NGL F+ETSA +TNV F I
Sbjct: 133 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 107/156 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+ T+K +IWDTAG ER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDI ++E ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 67 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
V +EA+A+A++NGL F+ETSA +TNV F I
Sbjct: 127 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 103/157 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK DL D R
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168
+V+ EE + A+E + F+ETSAK NV +F +A
Sbjct: 123 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 109/167 (65%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G++ + K+VLLG+ GK+SLVLR+ + +F + +T+GA+F ++ L + V IW
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+ + + + GNK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
DL R V+ +EA++YA+ G TSAK + ++F ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 1/171 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ + N+ +K +IWDTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
RY ++ YYRGA A++VYDIT + SFE +KW++EL+ + N+V+ L GNK+DL
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 181
R + +A YA++ L F+ETSA ATNV F+++ + V+ +
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQAT 179
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 108/167 (64%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G++ + K+VLLG+ GK+SLVLR+ + +F + +T+ A+F ++ L + V IW
Sbjct: 15 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 74
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+ + + + GNK
Sbjct: 75 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 134
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
DL R V+ +EA++YA+ G TSAK + ++F ++ KR+
Sbjct: 135 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL +
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSG 182
V A+ +A G+ F+ETSAK ATNV F +A + R+ P G
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 108/167 (64%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G++ + K+VLLG+ GK+SLVLR+ + +F + +T+ A+F ++ L + V IW
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+H+L P+YYR + AI+VYDIT++ SF++ K WV+EL+ + + + GNK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
DL R V+ +EA++YA+ G TSAK + ++F ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
V A+ +A G+ F+ETSAK ATNV F EI KR+
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL +
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
V A+ +A G+ F+ETSAK ATNV F EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL +
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
V A+ +A G+ F+ETSAK ATNV F EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL +
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 146
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
V A+ +A G+ F+ETSAK ATNV F EI KR+
Sbjct: 147 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYDIT++ +F K+W + + N + L GNK+D ++ R
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
VTA++ +A A+E G+ F+E+SAK NVN+IF+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL +
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
V A+ +A G+ F+ETSAK ATNV F EI KR+
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 101/168 (60%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+ ++ L GNK DL D R
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
V + A+ +A N + F+ETSA +TNV D F +A+++ N
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL +
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKR 170
V A+ +A G+ F+ETSAK ATNV F EI KR
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 101/168 (60%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+ ++ L GNK DL D R
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
V + A+ +A N + F+ETSA +TNV D F +A+++ N
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 177
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q S+ K+W+QE+ + N+ L GNK+DL +
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
V A+ +A G+ F+ETSAK ATNV F EI KR+
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 105/164 (64%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
N K+VL+G+ G GK++L+ RF + +F +TIG F ++T+ + A VK +IWDTA
Sbjct: 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 82
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
G ERY ++ YYRGA A++V+D+T ++ ++W++EL +V+ L GNK+DL
Sbjct: 83 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
AR+V EEA+ +A+ NGL F+ETSA +TNV F + K +
Sbjct: 143 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 103/160 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G G GKS L+ +F++ +F + TIG F S+ + V TVK +IWDTAGQER
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT++ ++ W+ + + +PN+V+ L GNK DL R
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
+VT EA +AQEN L F+ETSA T NV + F + A+ +
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 105/164 (64%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
N K+VL+G+ G GK++L+ RF + +F +TIG F ++T+ + A VK +IWDTA
Sbjct: 8 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
G ERY ++ YYRGA A++V+D+T ++ ++W++EL +V+ L GNK+DL
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
AR+V EEA+ +A+ NGL F+ETSA +TNV F + K +
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q S+ K+W+QE+ + N+ L GNK+DL +
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
V A+ +A G+ F+ETSAK ATNV F EI KR+
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 100/156 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF +F +STIG F ++T+ V + +K +IWDTAG ER
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A+IVYDI+ +S+E W+ EL+ + N+ + L GNK+DL R
Sbjct: 72 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLR 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
V +EA+ +A EN + F ETSA + NV+ F E+
Sbjct: 132 AVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYDIT++ +F K+W + + N + L GNK+D + R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
VTA++ +A A+E G+ F+E+SAK NVN+IF+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T++ +F K+W + + N + L GNK+D ++ R
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 140
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
VTA++ +A A+E G+ F+E+SAK NVN+IF+ +AK +
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T++ +F K+W + + N + L GNK+D ++ R
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
VTA++ +A A+E G+ F+E+SAK NVN+IF+ +AK +
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 104/160 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+G+ G GK+ LV RF +G F Q +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYR A A I+ YDIT + SF +W++E++ + ++ L GNK DL + R
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
+V+ + A+ +++ ++++ETSAK + NV +F ++A RL
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 108/199 (54%), Gaps = 40/199 (20%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV----------------- 54
K VLLG+ GKSS+VLR K F E +TIGA+F + + +
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 55 --------------------NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN 94
N +KF+IWDTAGQERY S+ P+YYRGA AI+V+DI+N
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95 QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 154
+ +RAK WV +L+ N ++ L NK D + +V E Q YAQ+N L F++TSA
Sbjct: 129 SNTLDRAKTWVNQLKIS--SNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 155 KTATNVNDIFYEIAKRLPR 173
KT TN+ +IFY +A+ + +
Sbjct: 186 KTGTNIKNIFYMLAEEIYK 204
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 100/161 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ G GKS L+LRF + STIG F +T+ ++ TVK +IWDTAGQER
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRG+ IIVYD+T+Q SF K W+QE+ ++ L GNK DL D R
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 142
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
V + A+ +A N + F+ETSA +TNV D F +A+++
Sbjct: 143 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 183
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L G K DL +
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKK 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
V A+ +A G+ F+ETSAK ATNV F EI KR+
Sbjct: 130 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++L+GD G GKS L++RFV+ +F +TIG F +T+ +N VK ++WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA I+VYD+T++ +F K+W + + N + L GNK+D + R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
VTA++ +A A+E G+ F+E+SAK NVN+IF+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 139 bits (351), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 103/160 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAGQER
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT++ ++ W+ + + + N+V+ L GNK DL R
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
+VT EA +AQEN L F+ETSA T NV + F + A+++
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDT 66
++ K++L+GD G GK+ L++RF G F+ ST+G F ++ L V+ VK ++WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126
AGQER+ S+ YYR A A +++YD+TN+ASF+ + W+ E+ ++ + L GNK D
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
R V E+ + A+E GL FMETSAKT NV+ F IAK L R
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD GK+ +V RF G F E Q STIG F +TL + VK +IWDTAGQER
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYR A AI+ YDIT ++SF W+++++ N+V L GNK+DL + R
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150
Query: 132 KVTAEEAQAYAQENGLFF-METSAKTATNVNDIFYEIAKRLPRVQPAP 178
+V+ EAQ+ A+ + +ETSAK ++NV + F +A L P
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 103/160 (64%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAGQER
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT++ ++ W+ + + + N+V+ L GNK DL R
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 132
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
+VT EA +AQEN L F+ETSA T +V + F + A+++
Sbjct: 133 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 101/161 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ ++ RF + F STIG F +T+ ++ +K +IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA ++VYDITN+ SF+ + W++ ++ + ++ + GNK D+ D R
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
+V+ E + A + G+ FMETSAK NV + F+ +A+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 101/161 (62%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+GD G GK+ ++ RF + F STIG F +T+ ++ +K +IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA ++VYDITN+ SF+ + W++ ++ + ++ + GNK D+ D R
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
+V+ E + A + G+ FMETSAK NV + F+ +A+ +
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 102/160 (63%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K +++G+ G GKS L+ +F++ +F + TIG F S+ + V VK +IWDTAG ER
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ S+ YYRGAA A++VYDIT++ ++ W+ + + + N+V+ L GNK DL R
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
+VT EA +AQEN L F+ETSA T +V + F + A+++
Sbjct: 130 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+++GD G GKSSL+LRF F +TIG F +T+ +N VK +IWDTAGQER
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRG I+VYD+T+ SF K+W+ E+ Q ++ L GNK D + +
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERK 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
V E+A +A + G+ ETSAK NV ++F I + + R +
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK 174
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 16/209 (7%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA- 177
+ GNK D L+ R+V + AQA+ +N + + ETSAK A NV F IA+ + +
Sbjct: 122 VLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 178 ------PNPSGMVLMDRPGERTASASCCS 200
P P + +D+ ASA CS
Sbjct: 181 ELYNEFPEP---IKLDKNERAKASAESCS 206
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 16/209 (7%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA- 177
+ GNK D + R+V + AQA+ +N + + ETSAK A NV F IA+ + +
Sbjct: 122 VLGNKID-FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 178 ------PNPSGMVLMDRPGERTASASCCS 200
P P + +D+ ASA CS
Sbjct: 181 ELYNEFPEP---IKLDKNDRAKASAESCS 206
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ G GKSSL+LRF F +TIG F +T++V+ K IWDTAGQER
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDA 130
+ +L P YYRGA I+VYD+T + +F + W+ EL+ N +V L GNK D +
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KEN 135
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V E +A+++ F+E SAKT V F E+ +++
Sbjct: 136 REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 16/209 (7%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
WDTAG ER+ SL +YRGA ++V+D+T +F+ W E Q +P N
Sbjct: 62 WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA- 177
+ GNK D L+ R+V + AQA+ +N + + ETSAK A NV F IA+ + +
Sbjct: 122 VLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 178 ------PNPSGMVLMDRPGERTASASCCS 200
P P + +D+ ASA CS
Sbjct: 181 ELYNEFPEP---IKLDKNDRAKASAESCS 206
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
T K + K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + V+D V +I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
WDTAGQER+ SL +YRGA ++V+D+T +F+ W E Q +P N
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTATNVNDIFYEIAK 169
+ GNK D L+ R+V + AQA+ +N + + ETSAK A NV F IA+
Sbjct: 122 VLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 104/172 (60%), Gaps = 12/172 (6%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWD 65
KNI K+++LGD G GK+SL+ R+V ++ + ++TIGA F ++ + V+ D ++WD
Sbjct: 6 KNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWD 64
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN----MVMALA 121
TAGQER+ SL +YRGA ++VYD+TN +SFE K W E N N +
Sbjct: 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124
Query: 122 GNKADLLDARKVTAEE-AQAYAQENG---LFFMETSAKTATNVNDIFYEIAK 169
GNK D +++K+ +E+ AQ A+ G LF TSAK A NV+ F EIA+
Sbjct: 125 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAFEEIAR 174
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
+ +++++G G GK+SL+ RF F E +ST+G F +T+ + ++ +IWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
GQER++S+ YYR A I+VYDIT + +F+ KW++ + + + + L GNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 128 LDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIA 168
R++T ++ + +AQ+ G+ F E SAK NV++IF ++
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 185
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 87/153 (56%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KL+L+G+ GK+S + R+ F ST+G F +T+ +D +K +IWDTAGQER
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA +++YDI NQ SF + W +++ N + L GNK DL D R
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
V AE+ + A + G F E SAK NV +F
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 86/153 (56%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ GK+S + R+ F ST+G F +T+ ND +K +IWDTAGQER
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA I++YDITN+ SF + W +++ N + L GNK D+ D R
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
V++E + A G F E SAK NV F
Sbjct: 127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 75/115 (65%)
Query: 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72
L+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K++ K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDT
Sbjct: 4 KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAG 122
AGQER+ SL +YRGA ++ + + ++ SFE W +E + + + G
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 123 NKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPRVQ 175
NK D D R+VT EEAQ + ENG + ++ETSAK TNV F E +++ V+
Sbjct: 124 NKVDKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVE 176
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+V++G+ GKSS++ R+ KG F + + TIG F + + VND V+ +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ ++ YYRGA A ++V+ T++ SFE W +++ A+ ++ AL NK DLLD
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170
+ EEA+ A+ L F TS K NV+++F +A++
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN + KL+++G+ GK+S + R+ F ST+G F +T+ ++ VK +IW
Sbjct: 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERY ++ YYRGA I++YDITN+ SF + W +++ N + L GNK
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
D+ + R V E+ Q A++ G F E SAK +V F
Sbjct: 138 CDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ SL +YRG+ ++ + + + SF+ W +E + + + GNK D+
Sbjct: 73 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI 132
Query: 128 LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 171
+ R+V+ EEAQA+ ++NG + + ETSAK +TNV F E +R+
Sbjct: 133 KE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 83/153 (54%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G+ GK+S + R+ F ST+G F +T+ ND +K +IWDTAG ER
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA I+ YDITN+ SF + W +++ N + L GNK D D R
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
V++E + A G F E SAK NV F
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ SL +YRG+ ++ + + + SF+ W +E + + + GNK D+
Sbjct: 71 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 130
Query: 128 LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 171
+ R+V+ EEAQA+ ++NG + + ETSAK ATNV F E +R+
Sbjct: 131 SE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLGD G GKSSL+ R+V +F TIG F ++ L V+ V +IWDTAGQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ SL +YRG+ ++ + + + SF+ W +E + + + GNK D+
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128
Query: 128 LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 171
+ R+V+ EEAQA+ ++NG + + ETSAK ATNV F E +R+
Sbjct: 129 SE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
+ G+++ K++++GD GK+ L RF G+F + E+TIG F + + ++ +K
Sbjct: 11 LVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK 70
Query: 61 FEIWDTAGQERYH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-M 118
++WDTAGQER+ S+ YYR A + VYD+TN ASF W++E + N +
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 119 ALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN---VNDIFYEIAKRL 171
L GNK DL A +V + AQ +A + + ETSAK + V IF +A +L
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++GD GK+ L RF G+F + E+TIG F + + ++ +K ++WDTAGQER
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72 YH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129
+ S+ YYR A + VYD TN ASF W++E + N + L GNK DL
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 150
Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATN---VNDIFYEIAKRL 171
A +V + AQ +A + ETSAK + V IF +A +L
Sbjct: 151 AIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL GD GKSS ++R K +F E +T+G F +TL V+ ++WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA- 130
+ S+A Y+R A +++YD+T + SF ++WV ++ + + + L GNKAD+ D
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 131 -----RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
+ V + A G F ETSAK +N+ + +A+ + +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG VG GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQ 65
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
+ ++ +Y + +VY IT Q++F + ++ L+ + ++ M L GNK DL D
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
R V E+ Q A++ N F+E+SAK+ NVN+IFY++ +++ R
Sbjct: 126 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE+Y L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
+ ++ +Y + +VY IT Q++F + ++ L+ + ++ M L GNK DL D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
R V E+ Q A++ N F+E+SAK+ NVN+IFY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 15/170 (8%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA------ 57
+G+ + KL+ LGD G GK++ + R+ +F +T+G F + + N
Sbjct: 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 58 ----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG- 112
V ++WDTAGQER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 113 --NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
NP++V L GNKADL D R+V +A+ A + G+ + ETSA T NV
Sbjct: 139 CENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 186
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 19/188 (10%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN------- 55
+ G+ + K + LGD G GK+S++ ++ G+F +T+G F + +
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 56 ---DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
+ ++WDTAG ER+ SL ++R A ++++D+TN+ SF + W+ +LQ
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND----IFY 165
NP++V L GNK+DL D R V EEA+ A++ G+ + ETSA TN++ +
Sbjct: 124 YSENPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
Query: 166 EIAKRLPR 173
I KR+ R
Sbjct: 182 LIMKRMER 189
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAGQE++ L YY A AII +D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
V ++WDTAG ER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND------- 162
NP++V L GNKADL D R+V +A+ A++ G+ + ETSA T NV
Sbjct: 124 YCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 163 -IFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASC 198
I + K + + Q +G GE+ A C
Sbjct: 182 LIMKRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKC 218
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 15/171 (8%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
V ++WDTAG ER+ SL ++R A ++++D+T+Q SF + W+ +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
NP++V L GNKADL D R+V +A+ A++ G+ + ETSA T NV
Sbjct: 124 YCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F+E + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
+ ++ +Y + +VY IT Q++F + ++ L+ + ++ M L GNK DL D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
R V E+ Q A++ F+E+SAK+ NVN+IFY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
A G + KLVL+GD G GK++ V R + G+F + +T+G N +KF
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
+WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV+LG G GKS+L ++FV+G F++ + TI ++ Q + V+ EI DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
+ ++ +Y + +VY IT Q++F + ++ L+ + ++ M L GNK DL D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
R V E+ Q A++ F+E+SAK+ NVN+IFY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
V ++WDTAG ER+ SL ++R A ++ +D+T+Q SF + W +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
NP++V L GNKADL D R+V +A+ A++ G+ + ETSA T NV
Sbjct: 124 YCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
T G+ + KL+ LGD G GK++ + R+ +F +T+G F + + +
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58 -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
V ++WDTAG ER+ SL ++R A ++ +D+T+Q SF + W +LQA
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
NP++V L GNKADL D R+V +A+ A++ G+ + ETSA T NV
Sbjct: 124 YCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 3 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAG E++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 121
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 122 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA G + KLVL+GD G GK++ V R + G+F + +T+G N +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
F +WDTAG E++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V+ EEA+ A++ + ++ETSAKT NV+ +F+++ + +
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ KLVL+GD G GK++ V R + G+F + +T+G N +KF +WDTAG
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128
QE++ L YY A AII++D+T++ +++ W ++L + N+ + L GNK D+
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 120
Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 121 D-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V+ EEA+ A++ + ++ETSAKT NV+ +F+++ + +
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V+ EEA+ A++ + ++ETSAKT NV+ +F+++ + +
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
A G + KLVL+GD G GK++ V R + G+ + +T+G N +KF
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
+WDTAGQE++ L YY A AII++D+T++ +++ W ++L + N+ + L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
GNK D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
Y ++ Y R + V+ I N SFE + ++++ + + ++ M L GNK DL +
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PS 123
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
R V ++AQ A+ G+ F+ETSAKT V+D FY + + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V+ EEA+ A + + ++ETSAKT NV+ +F+++ + +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G + KLVL+GD G GK++ V R + G+F + +T+G N +KF +W
Sbjct: 1 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAG E++ L YY A AII++D+T++ +++ W ++L + N+ + L GNK
Sbjct: 61 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNK 119
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
D+ D RKV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 120 VDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
Y ++ Y R + V+ I N SFE + ++++ + + ++ M L GNK+D L +
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD-LPS 123
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
R V ++AQ A+ G+ F+ETSAKT V+D FY + + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
Y ++ Y R + V+ I N SFE ++ ++++ + + ++ M L GNK DL A
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A 122
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R V + +AQ A+ G+ ++ETSAKT V D FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
Y ++ Y R + V+ I N SFE ++ ++++ + + ++ M L GNK DL A
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A 122
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R V + +AQ A+ G+ ++ETSAKT V D FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
Y ++ Y R + V+ I N SFE ++ ++++ + + ++ M L GNK DL A
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A 122
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R V + +AQ A+ G+ ++ETSAKT V D FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
K+ KL + G G GKS+LV+RF+ +FI + T+ + + Q ++D V EI DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKA 125
AGQE + R ++VYDIT++ SFE L P N+ + L GNKA
Sbjct: 84 AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEIAKRLPR 173
DL +R+V+ EE + A E F E SA T N+ +IFYE+ + + R
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
Y ++ Y+R + V+ IT SF + ++ L+ + + N+ L GNK+DL D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V+ EEA+ A++ + ++ETSAKT NV+ +F+++ + +
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 92/161 (57%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV++G G GKS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
Y ++ Y R + V+ I N SFE ++ ++++ + + ++ M L GNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-G 122
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R V + +AQ A+ G+ ++ETSAKT V D FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ L YY A AII++D+T++ +++ W ++L + N+ + L GNK D+ + R
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
KV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 132 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLD 129
Y ++ Y+R ++V+ IT SF ++ ++ L+ + + + + + GNK+DL +
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
R+V EEA++ A+E G+ ++ETSAKT NV+ +F+++ + + + + N
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 177
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G G GKS+L L+F+ +F+E E T A + + + ++ V+ +I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLD 129
Y ++ Y+R ++V+ IT SF ++ ++ L+ + + + + + GNK+DL +
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
R+V EEA++ A+E G+ ++ETSAKT NV+ +F+++ + + + + N
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 173
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ L YY A AII++D+T++ +++ W ++L + N+ + L GNK D+ + R
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 124
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
KV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 125 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GK++ V R + G+F + +TIG + N +KF++WDTAG E+
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ L YY A AII++D+T++ +++ W ++L + N+ + L GNK D+ + R
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
KV A+ + ++N L + + SAK+ N F +A++L
Sbjct: 124 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 162
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 1/164 (0%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWD 65
+ + K+ L+GD G GK++ + R + G+F + +T+GA T + V KF +WD
Sbjct: 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
TAGQE+ L +YY GA+ AI+ +D+T++ + + +WV+E QA + + NK
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
D+ + +K++ + + + E SAKTA N F +A+
Sbjct: 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F++ F+ + TI ++ Q + ++D + +I DTAGQE + ++ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83 AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
++V+ +T++ SFE K+ ++ L+ + M L GNKADL R+VT EE Q
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
A++ + +ME SAK NV+ F+E+ + + + Q
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
K+V+LGD +GK+SL F + F + + TIG FF + + + + V +IWD GQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADL 127
+ Y GA ++VYDITN SFE + W V+++ + ++AL GNK DL
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
R + E+ + QENG SAKT +V F ++A + ++
Sbjct: 128 EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GDV GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 5 IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 63
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 122
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 177
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSG 182
A+ G+ ++ETSAKT V D FY + + +L ++ P P+ SG
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG 178
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G+ I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +W
Sbjct: 4 GSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGN 123
DTAGQE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GN
Sbjct: 63 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGN 121
Query: 124 KADL------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
K DL + V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 122 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 180
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++FV G FIE + TI F+ + + V+ + EI DTAG E++ S+ +Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83 AAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
I+VY + NQ SF+ K Q ++ + + + L GNK DL R+V++ E +A
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+E G FMETSAK+ T V+++F EI +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 178
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 178
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +W
Sbjct: 1 GMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALW 59
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGN 123
DTAGQE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GN
Sbjct: 60 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGN 118
Query: 124 KADL------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
K DL + V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 119 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 177
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 178
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F+E + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 66 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 124
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 179
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 3/158 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++ + G G GKSSLVLRFVKG F E T+ + Q ++ + + +I DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQ 63
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMV-MALAGNKADLLD 129
+ ++ + A I+VY IT++ S E K +++ + +G+ + + L GNK D
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
+R+V + EA+A A+ FMETSAK NV ++F E+
Sbjct: 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE + ++++ + + ++ M L GNK+D L +R V ++AQ
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD-LPSRTVDTKQAQDL 134
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
A+ G+ F+ETSAKT V+D FY + + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE + ++++ + + ++ M L GNK+D L +R V ++AQ
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD-LPSRTVDTKQAQDL 134
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
A+ G+ F+ETSAKT V+D FY + + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 140
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK+DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK+DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAK 169
A+ G+ ++ETSAKT V D FY + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + +I ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 139
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V +GD GK+ +++ + +F I F FS +AV+ V +WDTAGQ
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ YRGA ++ + + ++AS+E KKW+ EL+ + PN+ + L G K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLR 126
Query: 129 DARKVTAEEAQAYAQENG---------LFFMETSAKTATNVNDIF---YEIAKRLPRVQP 176
D + A+ G ++E S+KT NV +F ++ + PR +
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186
Query: 177 AP 178
P
Sbjct: 187 VP 188
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GN+ DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE + ++++ + + ++ M L GNK DL +R V ++AQ
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
A+ G+ F+ETSAKT V+D FY + + + +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+V+LG GK+SL +FV+G+F E + T+ + S+ + + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDA 130
Y L + G ++VY +T+ SF+ + Q+L + G + + L GNKADL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
R+V A E + A+ G FME+SA+ IF ++ + + RV+
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + +I ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ L++ + F T+ F S + VN ATV +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
Y+ L P+ YRGA I+ + + ++AS+E +KKW+ EL+ P + + L G K DL D
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD 127
Query: 131 RK----------VTAEEAQAYAQENGL-FFMETSAKTATNVNDIF 164
++ +T + + + G ++E S+K+ NV +F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
K++L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDL 141
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V +EE + A F ++E SAKT V ++F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 141
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V +EE + A F ++E SAKT V ++F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG+E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 119
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 174
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 119
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 174
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ +I DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ +++ + F T+ F S + V+ TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
Y+ L P+ YRGA I+ + + ++AS+E AKKW+ EL+ P + + L G K DL D
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
Query: 131 RK----------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIF 164
++ +T + + + G ++E S+KT NV +F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GDV GK+ L++ F K QF T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V E + A G F +ME SAKT V ++F E+A R
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SFE ++ ++++ + + ++ M L GNK DL AR V + +AQ
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ ++ETSAKT V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V +GD GK+ +++ + F T+ F S + V+ +TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
Y+ L P+ YRGA ++ + + ++AS+E KKW+ EL+ P + + L G K DL D
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRDD 125
Query: 131 RK-----------VTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
++ TA+ + + ++E S+KT NV +F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F ++ + VN ++ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDA 130
Y Y I+VY +T+ SFE K +L G + + L GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
R ++ EE +A A+ F+E+SAK D+F I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
E Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 124
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V EE + A G F +ME SAKT V ++F E+A R
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 179
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F ++ + VN ++ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
Y Y I+VY +T+ SFE K + L G + + L GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
R ++ EE +A A+ F+E+SAK D+F I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ K QF E T+ + + + V+ V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + I + S E +KW E++ PN+ + L GNK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
+ V +EE + A F ++E SAKT V ++F E+A R
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 176
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 2/167 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F ++ + VN ++ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
Y Y I+VY +T+ SFE K + L G + + L GNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA 177
R ++ EE +A A+ F+E+SAK D+F I ++ A
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKIDGA 168
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F + F++ + TI ++ T N + ++ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83 AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+IVY +T++ASFE ++ Q L+ + + M L NK DL+ RKVT ++ +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLFFMETSAKT-ATNVNDIFYEIAK 169
A + + ++ETSAK NV+ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ +LG GKSSL ++FV+GQF++ + TI F ++ + VN ++ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
Y Y I+VY +T+ SFE K + L G + + L GNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
R ++ EE +A A+ F+E+SAK D+F I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+ K+VL+GD G GK+SL++ F G F E T+ + L V V IWDTAGQ
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQ 92
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128
+ Y L P++Y A+ ++ +D+T+ SF+ +W E+ + + + G K DL
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLR 151
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAK 169
+ VT Q A+ G + ++E SA+ NV+ +F E A+
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++ ++ F++ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 83 AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+ V+ I N SF + ++++ + + ++ M L GNK DL R V ++A
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
A+ G+ F+ETSAKT V D FY + + +
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F + F+ + TI ++ T +++ ++ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 83 AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+IVY +T++ASFE ++ Q L+ + + M L NK DL+ RKVT ++ +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLFFMETSAKTAT-NVNDIFYEIAK 169
A + + ++ETSAK NV+ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F + F++ + TI ++ T N + ++ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83 AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+IVY +T++ASFE ++ Q L+ + + M L NK DL+ RKVT ++ +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLFFMETSAKT-ATNVNDIFYEIAK 169
A + + ++ETSAK NV+ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F + F+ + TI ++ T +++ ++ DTAGQE + ++ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 83 AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
+IVY +T++ASFE ++ Q L+ + + M L NK DL+ RKVT ++ +
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 142 AQENGLFFMETSAKT-ATNVNDIFYEIAK 169
A + + ++ETSAK NV+ F+++ +
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KS+L ++F++ F+ + TI ++ ++ +V+ + +I DTAGQE + ++ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83 AAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
++V+ I ++ SF E K + Q L+ + + + L GNKADL R+V EA A+
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
+ + + E SAK NV++ F ++ + + + Q
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
M+ +I KLV++GD GK+ L++ KGQF E T+ + + + V+ V+
Sbjct: 1 MSQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVE 59
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ--AQGNPNMV 117
+WDTAGQE Y L P+ Y + +I + I S E + KW+ E+ QG P
Sbjct: 60 LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP--- 116
Query: 118 MALAGNKADLLD------------ARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIF 164
+ L G K DL + + VT++E Q+ A + G + E SAKT V ++F
Sbjct: 117 IILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
I KLV++GD GK+ L++ F K +F E T+ + + + V+ V+ +WDTAG
Sbjct: 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
QE Y L P+ Y ++ + + + S E +KWV E++ PN+ + L NK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDL 141
Query: 128 LDARKVTAEEAQAYAQ----ENG---------LFFMETSAKTATNVNDIFYEIAKR 170
V E A+ + ++G ++E SAKT V ++F E A R
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATR 196
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 23 KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
KSSLVLRFVKG F + TI + Q ++ + + +I DT G ++ ++ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83 AAAAIIVYDITNQASFERAKKWVQEL-QAQGN-PNMVMALAGNKADLLDARKVTAEEAQA 140
A I+V+ +T++ S E + + Q +G+ ++ + L GNK D R+V EAQA
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-QREVDTREAQA 138
Query: 141 YAQENGLFFMETSAKTATNVNDIFYEI 167
AQE FMETSAK NV ++F E+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 9/176 (5%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VK 60
G+ N ++VL+G+ G GKS+L F ++ +G + +TL V+ + +
Sbjct: 1 GSGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMA 119
++W+ G+ + L + A +IVY IT++ASFE+A + +Q +A+ ++ +
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 120 LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPR 173
L GNK+DL+ R+V+ E +A A F+ETSA NV ++F I + RL R
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 174
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 5 GNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKF 61
G+K + A K V++GD GK+ L++ + F I F +S + V+ V
Sbjct: 1 GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNL 57
Query: 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMAL 120
+WDTAGQE Y L P+ Y ++I + + + ASFE + KW E++ PN + L
Sbjct: 58 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL 116
Query: 121 AGNKADLLDAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
G K DL D + +T + A A+E G + ++E SA T + +F E
Sbjct: 117 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 175
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DAT-VKFEIWDTAG 68
++VLLGD G GK+SL F Q + E +G + +TL V+ D T V + W+
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADL 127
++ S +G +A +IVY I ++ SFE A + +L+ + V + L GNKADL
Sbjct: 65 LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
R+V+ EE +A A F+ETSA NV ++F
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 9/179 (5%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEI 63
N ++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAG 122
W+ G+ + L + A +IVY IT++ASFE+A + +Q +A+ ++ + L G
Sbjct: 95 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 123 NKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPRVQPAPN 179
NK+DL+ R+V+ E +A A F+ETSA NV ++F I + RL R N
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKN 211
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +WD
Sbjct: 19 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 77
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNK 124
T+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + PN M L G K
Sbjct: 78 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCK 136
Query: 125 ADL 127
+DL
Sbjct: 137 SDL 139
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +WD
Sbjct: 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 82
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNK 124
T+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + PN M L G K
Sbjct: 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCK 141
Query: 125 ADL 127
+DL
Sbjct: 142 SDL 144
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
N+N+ K+V++GD GK++L+ F K F E T+ + + + ++ ++ +W
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGN 123
DT+G Y ++ P+ Y + A +I +DI+ + + KKW E+Q + PN M L G
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGC 119
Query: 124 KADL 127
K+DL
Sbjct: 120 KSDL 123
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKAD 126
G+ + L + A +IVY IT++ASFE+A + +Q +A+ ++ + L GNK+D
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPRVQPAPNPSGMV 184
L+ R+V+ E +A A F+ETSA NV ++F I + RL R N +
Sbjct: 126 LVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLA 185
Query: 185 LMDRP 189
R
Sbjct: 186 YQKRK 190
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
++VL+G+ G GKS+L F ++ +G + +TL V+ + + ++W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKAD 126
G+ + L + A +IVY IT++ASFE+A + +Q +A+ ++ + L GNK+D
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPRVQPAPNPSGMV 184
L+ R+V+ E +A A F+ETSA NV ++F I + RL R N +
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLA 185
Query: 185 LMDRP 189
R
Sbjct: 186 YQKRK 190
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + AS+E + KW E++ P+ + L G K DL
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 126
Query: 129 DARK------------VTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T + A A+E + + ++E SA T + +F E
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 2 ATTGNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDAT 58
++G+ + A K V++GD GK+ L++ + F I F +S + V+
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKP 57
Query: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMV 117
V +WDTAGQE Y L P+ Y +I + + + ASFE + KW E++ PN
Sbjct: 58 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTP 116
Query: 118 MALAGNKADLLDARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIF 164
+ L G K DL D + +T + A A+E G + ++E SA T + +F
Sbjct: 117 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
Query: 165 YE 166
E
Sbjct: 177 DE 178
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G + K V++GD GK+ L++ + F E T+ ++ ++ V ++
Sbjct: 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLY 71
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGN 123
DTAGQE Y L P+ Y +I + + N ASF+ K +WV EL+ PN+ L G
Sbjct: 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGT 130
Query: 124 KADLLDARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
+ DL D K + E+ Q A+E G ++E SA T + +F E
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 22/171 (12%)
Query: 11 AKLVLLGDVGAGKSSLVLRFV-KGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
K VL+GD GK+SLV+ + G E+ I AF FS ++V+ V+ ++ DTA
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEY----IPTAFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKAD 126
GQ+ + L P+ Y ++ + + + +SF+ ++KWV E++ P + L G ++D
Sbjct: 77 GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSD 135
Query: 127 L---------LDARK---VTAEEAQAYAQE-NGLFFMETSAKTATNVNDIF 164
L LD K V E A+ A+E ++E SA T N+ ++F
Sbjct: 136 LREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 139
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + AS+E + KW E++ P+ + L G K DL
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 127
Query: 129 DARK------------VTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T + A A+E + + ++E SA T + +F E
Sbjct: 128 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAF---SGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 130
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K+V++GD GK+ L+L F KG E + + F FS + + +WDTAGQ
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKG---EIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y + ++ + + N+ SF+ + KW E++ + + L G K DL
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140
Query: 129 D--ARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPRVQPAP 178
+ VT +E Q+ G ++E S+ +N++F + + +P P
Sbjct: 141 KDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPVP 193
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 12 KLVLLGDVGAGKSSLVLRF----VKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWD 65
K V++GD GK+ L++ + + G++I F +S + V+ V +WD
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIP-------TVFDNYSANVMVDGKPVNLGLWD 84
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNK 124
TAGQE Y L P+ Y +I + + + ASFE + KW E++ PN + L G K
Sbjct: 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTK 143
Query: 125 ADLLDARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
DL D + +T + A A+E G + ++E SA T + +F E
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ P+ + L G K DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPHTPILLVGTKLDLR 121
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ P+ + L G K DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLR 121
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ P+ + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLR 120
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTN---AFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + AS+E + KW E++ P+ + L G K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
D + +T + A A+E + + ++E SA T + +F E + + Q
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180
Query: 176 P 176
P
Sbjct: 181 P 181
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 123
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFV-KG-QFIEFQESTIGAAFFSQTLAVNDATVKFEIW- 64
+ K+ ++G+ GKS+L+ F KG +F++ T G + + D TV E++
Sbjct: 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 65 -DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN----MVMA 119
DTAG + Y Y+ G AI+V+D+++ SFE K W EL P+ +
Sbjct: 78 LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAV 136
Query: 120 LAGNKADLLDAR-KVTAEEAQAYAQENGLFFMETSA 154
L NK DL R +V + AQ +A N L F + SA
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASFE + KW E++ PN + L G K DL
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K+V++GD GK+ L+L F KG E + + F FS + + +WDTAGQ
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKG---EIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y + ++ + + N+ SF+ + KW E++ + + L G K DL
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 139
Query: 129 D--ARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIF 164
+ VT +E Q+ G ++E S+ +N++F
Sbjct: 140 KDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GDV GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASF + KW E++ PN + L G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
L A +IVY +T++ SFE+A + VQ +A+ ++ + L GNK+DL+ +
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V+ +E +A A F+ETSA NV +F + +++
Sbjct: 122 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
L A +IVY +T++ SFE+A + VQ +A+ ++ + L GNK+DL+ +
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V+ +E +A A F+ETSA NV +F + +++
Sbjct: 127 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++LLG G GKS+L F G + E+ + +++ V+ ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
L A +IVY +T++ SFE+A + VQ +A+ ++ + L GNK+DL+ +
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
R+V+ +E +A A F+ETSA NV +F + +++
Sbjct: 127 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASF + KW E++ PN + L G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAG
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y +I + + + ASF + KW E++ PN + L G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
D + +T + A A+E G + ++E SA T + +F E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
KLVL+GDV GK++++ K + E+ + F ++ L + V+ +WDT+
Sbjct: 11 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 67
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKAD 126
G Y ++ P+ Y + A ++ +DI+ + + A KKW E+ P+ + L G K D
Sbjct: 68 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 126
Query: 127 L---------LDARK---VTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEIAKRLPR 173
L L +K ++ E+ A A++ G ++E SA T+ + A L
Sbjct: 127 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186
Query: 174 VQPAPNP 180
+P+P P
Sbjct: 187 NKPSPLP 193
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
KLVL+GDV GK++++ K + E T+ + + L + V+ +WDT+G
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGS 85
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL- 127
Y ++ P+ Y + A ++ +DI+ + + A KKW E+ P+ + L G K DL
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDLR 144
Query: 128 --------LDARK---VTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEIAKRLPRVQ 175
L +K ++ E+ A A++ G ++E SA T+ + A L +
Sbjct: 145 TDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204
Query: 176 PAPNP 180
P+P P
Sbjct: 205 PSPLP 209
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
KLVL+GDV GK++++ K + E+ + F ++ L + V+ +WDT+
Sbjct: 10 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 66
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKAD 126
G Y ++ P+ Y + A ++ +DI+ + + A KKW E+ P+ + L G K D
Sbjct: 67 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 125
Query: 127 L---------LDARK---VTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEIAKRLPR 173
L L +K ++ E+ A A++ G ++E SA T+ + A L
Sbjct: 126 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185
Query: 174 VQPAPNP 180
+P+P P
Sbjct: 186 NKPSPLP 192
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 5 GNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDAT 58
G+K I+A K V++GD GK+ L++ + +F + F ++ T+ +
Sbjct: 1 GSKIISAMQTIKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEP 57
Query: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMV 117
++DTAGQE Y L P+ Y ++ + + + +SFE K KWV E+ P
Sbjct: 58 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTP 116
Query: 118 MALAGNKADLLD------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIF 164
L G + DL D + +T E A+ A++ + ++E SA T + ++F
Sbjct: 117 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
Query: 165 YE 166
E
Sbjct: 177 DE 178
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + A F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFE 62
G+ K V++GD GK+ L++ + +F + F ++ T+ +
Sbjct: 1 GSHMQTIKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLG 57
Query: 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALA 121
++DTAGQE Y L P+ Y ++ + + + +SFE K KWV E+ P L
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLV 116
Query: 122 GNKADLLD------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
G + DL D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 122
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 123 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 121
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 122 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 172
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFE 62
G+ K V++GD GK+ L++ + +F + F ++ T+ +
Sbjct: 1 GSHMQTIKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLG 57
Query: 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALA 121
++DTAGQE Y L P+ Y ++ + + + +SFE K KWV E+ P L
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLV 116
Query: 122 GNKADLLD------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
G + DL D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 72 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 130
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 131 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 181
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 39/190 (20%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + F I F +S + V+ V +WDTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70 ERYHSLAPMYY--------------RG-----AAAAIIVYDITNQASFERAK-KWVQELQ 109
E Y L P+ Y RG A +I + + + ASFE + KW E++
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 110 AQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENG-LFFMETSAKT 156
PN + L G K DL D + +T + A A+E G + ++E SA T
Sbjct: 124 HH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 157 ATNVNDIFYE 166
+ +F E
Sbjct: 183 QRGLKTVFDE 192
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 70
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD- 129
Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL D
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 129
Query: 130 -----------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
+ +T E A+ A++ + ++E SA T + ++F E
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K V++GD GK+ L++ + +F T+ + + T+ + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 67
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD- 129
Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 130 -----------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
+ +T E A+ A++ + ++E SA T + ++F E
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 122
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 123 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + + DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAG
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 124
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + + + F ++ T+ + ++DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKL---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
K V++GD GK+ L++ + +F + F ++ T+ + ++DTAG
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
E Y L P+ Y ++ + + + +SFE K KWV E+ P L G + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
D + +T E A+ A++ + ++E SA T + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K +WD GQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 79
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ S+ Y RG +A + + D +Q E +K + L Q QG P +V+ GNK DL
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKRDL 136
Query: 128 ---LDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161
LD +++ + + Q+ + S K N++
Sbjct: 137 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K +WD GQ R
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 88
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ S+ Y RG +A + + D +Q E +K + L Q QG P +V+ GNK DL
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKRDL 145
Query: 128 ---LDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161
LD +++ + + Q+ + S K N++
Sbjct: 146 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 182
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 15/183 (8%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---F 61
G K+ K++L+G+ G GKS+L F Q E + + + V+ V +
Sbjct: 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 62 EIW---DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NM 116
+IW D G R H L A +IV+ +T++ SF + + + L+A G P ++
Sbjct: 78 DIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDL 131
Query: 117 VMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
+ L GNK+DL +R+V+ EE + A +ETSA N ++F E A R R++
Sbjct: 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF-EGAVRQIRLRR 190
Query: 177 APN 179
N
Sbjct: 191 GRN 193
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L L+G +GK++ V GQF E T+G F + + + T+K IWD GQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQPR 79
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
+ S+ Y RG A + + D ++ E ++ + L Q QG P +V+ GNK DL
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKRDL 136
Query: 128 ---LDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161
LD +++ + + Q+ + S K N++
Sbjct: 137 PNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNID 173
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW---D 65
K++LLG+ G GKS+L F Q E + + + V+ V ++IW D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGN 123
G + H L A +IV+ +T++ SF + + + L+A G P ++ + L GN
Sbjct: 74 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGN 127
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
K+DL +R+V+ EE + A +ETSA N ++F
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW---D 65
K++L+G+ G GKS+L F Q E + + + V+ V ++IW D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGN 123
G + H L A +IV+ +T++ SF + + + L+A G P ++ + L GN
Sbjct: 64 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGN 117
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
K+DL +R+V+ EE + A +ETSA N ++F
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 12/157 (7%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-TVQYKNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
D GQ+R SL YYR I V D +++ A++ +Q + + N V + N
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126
Query: 124 KADL---LDARKVTAEEAQAYAQENGLFFMETSAKTA 157
K DL + A ++T E+ ++ N +F++++ T+
Sbjct: 127 KQDLPEAMSAAEIT-EKLGLHSIRNRPWFIQSTCATS 162
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
G N ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 371
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
D GQ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 428
Query: 121 AGNKADLLDARK 132
NK DL DA K
Sbjct: 429 FANKQDLPDAMK 440
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 9 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 61
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
D GQ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 118
Query: 121 AGNKADLLDARK 132
NK DL DA K
Sbjct: 119 FANKQDLPDAMK 130
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 10 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
D GQ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AGNKADLLDARK 132
NK DL DA K
Sbjct: 120 FANKQDLPDAMK 131
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVNDATVK---FEIWDT 66
KL ++G+ G+GK++L+ + K + + Q +T+G + + D + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
AG+E ++S P + A + VYD++ QA + K W+ ++A+ + + V+ L G
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 126 DLLDARKVTA 135
D+ D ++ A
Sbjct: 123 DVSDEKQRKA 132
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ L +LG GAGKS+L ++F+ +FI + + + S+ V+ V + DTA
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTAD 78
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ--ELQAQGNPNMVMALA-GNKA 125
+ + Y A A ++VY + ++ SF+ + +++ L A+ + AL GNK
Sbjct: 79 LDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTA-TNVNDIFYEIAKRLPR 173
D+ R+VT E A A G F E SA +V +F+E + R
Sbjct: 138 DMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVNDATVK---FEIWDT 66
KL ++G+ G+GK++L+ + K + + Q +T+G + + D + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67 AGQERYHSLAPMYYRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
AG+E ++S P + A + VYD++ QA + K W+ ++A+ + + V+ L G
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 126 DLLDARKVTA 135
D+ D ++ A
Sbjct: 121 DVSDEKQRKA 130
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY G I V D ++ + A+ QEL N + ++ + NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 LDARK 132
DA K
Sbjct: 114 PDAMK 118
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY G I V D ++ + A+ QEL N + ++ + NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 LDARK 132
DA K
Sbjct: 114 PDAMK 118
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-TVQYKNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
D GQ+R SL YYR I V D +++ A++ +Q + + N + N
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 124 KADL---LDARKVTAEEAQAYAQENGLFFMETSAKTA 157
K DL + A ++T E+ ++ N +F++ + T+
Sbjct: 127 KQDLPEAMSAAEIT-EKLGLHSIRNRPWFIQATCATS 162
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++ LG AGK++++ + GQ + +TI F+ V VKF +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY G I V D ++ + A+ QEL N + ++ + NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 128 LDARK 132
DA K
Sbjct: 114 PDAXK 118
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + ++++LG AGK++++ + GQ + +TI F+ V VKF +W
Sbjct: 10 GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVE-TVTYKNVKFNVW 62
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
D G ++ L YY G I V D ++ + A+ QEL N + ++ +
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AGNKADLLDARK 132
NK DL DA K
Sbjct: 120 FANKQDLPDAMK 131
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G GAGK++++ + G+ I +TI F+ V + F +WD GQ+R
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-TVQYKNISFTVWDVGGQDR 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADL--- 127
SL YYR I V D +++ A++ +Q + + N + NK DL
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 116
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTA 157
+ A ++T E+ ++ N +F++ + T+
Sbjct: 117 MSAAEIT-EKLGLHSIRNRPWFIQATCATS 145
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK + +++++G GAGK++++ + G+ I +TI F+ V + F +W
Sbjct: 14 GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-CVQYCNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
D GQ+R SL YY I V D +++ A++ +Q + + N + N
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 124 KADL---LDARKVTAEEAQAYAQENGLFFMETSAKTA 157
K DL + A ++T E+ ++ N +F++ + T+
Sbjct: 127 KQDLPEAMSAAEIT-EKLGLHSIRNRPWFIQATCATS 162
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+ ++++LG AGK++++ + GQ + +TI F+ V VKF +WD G
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVE-TVTYKNVKFNVWDVGG 55
Query: 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNK 124
++ L YY G I V D ++ + A+ QEL N + ++ + NK
Sbjct: 56 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 112
Query: 125 ADLLDARK 132
DL DA K
Sbjct: 113 QDLPDAMK 120
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK++++ + GQ + +TI F+ V VKF +WD G ++
Sbjct: 5 RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVE-TVTYKNVKFNVWDVGGLDK 59
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY G I V D ++ + A+ QEL N + ++ + NK DL
Sbjct: 60 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 116
Query: 128 LDARK 132
DA K
Sbjct: 117 PDAMK 121
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 23/171 (13%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+L +LGD +GKSSL+ RF+ G Q +E ES + + + V+ T I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ----YKKEMLVDGQTHLVLIREEAG- 63
Query: 70 ERYHSLAP-MYYRGAAAAII-VYDITNQASFE---RAKKWVQELQAQGNPNMVMALAGNK 124
AP + G A A+I V+ + ++ SF+ R + L+ +G + +AL G +
Sbjct: 64 ------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
Query: 125 ADLLDA---RKVTAEEAQAY-AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
D + A R V A+A A + ET A NV+ +F E+A+++
Sbjct: 118 -DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+L +LGD +GKSSL+ RF+ G Q +E ES + + + V+ T I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ----YKKEMLVDGQTHLVLIREEAG- 63
Query: 70 ERYHSLAP-MYYRGAAAAII-VYDITNQASFE---RAKKWVQELQAQGNPNMVMALAGNK 124
AP + G A A+I V+ + ++ SF+ R + L+ +G + +AL G +
Sbjct: 64 ------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
Query: 125 ADLLDARKVTAEEAQAYAQENGL---FFMETSAKTATNVNDIFYEIAKRL 171
+ + +A+A A + + ET A NV+ +F E+A+++
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
N ++++LG GAGK++++ R G+ + + TIG F +TL+ + +K +WD
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSYKN--LKLNVWDLG 70
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK----WVQELQAQGNPNMVMALAGN 123
GQ YY AA I V D T++ A K +QE + Q +V A +
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 124 KADLLDARKVTAE 136
+ L A +V+ E
Sbjct: 131 QPGALSASEVSKE 143
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK+S++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 19 RILMVGLDAAGKTSILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
L YY+ A I V D ++ A+ +EL N N ++ + NK DL
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKHDL 130
Query: 128 LDARKVT--AEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166
A ++ E+ +N ++ +TS ATN D YE
Sbjct: 131 PQAMSISEVTEKLGLQTIKNRKWYCQTSC--ATN-GDGLYE 168
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + +TI F+ V +KF++WD GQ
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFNVE-TVTYKNLKFQVWDLGGQTS 58
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADL 127
YY A I V D ++ +K + V L+ + ++ + NK D+
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 115
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 31 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNICFTVWDVGGQDK 85
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
L Y++ I V D ++ + + +Q+ LQ + V+ + NK D+ +A
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 131 RKV---TAEEAQAYAQENGLFFMETSAKTATNVND----IFYEIAKR 170
V T + + + + T A T + D + +E++KR
Sbjct: 146 MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 221
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
+ +++++G AGK++++ + G+ + +TI F+ V + F +WD GQ
Sbjct: 17 DVRILMVGLDAAGKTTILYKVKLGEVV----TTIPTIGFNVE-TVEFRNISFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKA 125
++ L YY I V D ++ + A+ +EL N + ++ + NK
Sbjct: 72 DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR---EELHRMINEEELKDAIILVFANKQ 128
Query: 126 DL---LDARKVTAEEAQAYAQENGLFFMETSA 154
DL + A +VT + +E F T A
Sbjct: 129 DLPNAMSAAEVTEKLHLNTIRERNWFIQSTCA 160
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ+R
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNICFTVWDVGGQDR 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ----AQGNPNMVMALAGNKADL 127
L Y++ I V D ++ ER ++ ELQ + V+ L NK DL
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDR---ERIQEVADELQKMLLVDELRDAVLLLFANKQDL 130
Query: 128 LDARKVT 134
+A ++
Sbjct: 131 PNAMAIS 137
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 56
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 73
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 133
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 132
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDR 102
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 77
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDR 101
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDR 96
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K++++G AGK++++ +F + + TIG+ + + +N+ +F +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIVINNT--RFLMWDIGGQES 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQ 95
S YY I+V D T++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDR 96
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + +TI F+ V +KF++WD G
Sbjct: 6 RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFNVE-TVTYKNLKFQVWDLGGLTS 60
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADL 127
YY A I V D ++ +K + V L+ + ++ + NK D+
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 117
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L++LG AGK++++ +F G+ I+ T+G F +TL K IWD GQ+
Sbjct: 18 RLLMLGLDNAGKTTILKKF-NGEDIDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKS 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADL 127
S Y+ I V D ++ + ++ +Q L + + + NK DL
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD G ++
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGLDK 58
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A++ + + A+ + V+ + NK DL +A
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 118
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+++++G AGK++++ + G+ + +TI F+ V + F +WD GQ++
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
L Y++ I V D ++ A+ + + + + V+ + NK DL +A
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 136
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L++LG AGK++++ +F G+ ++ T+G F +TL K IWD GQ+
Sbjct: 20 RLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKS 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADL 127
S Y+ I V D ++ + ++ +Q L + + + NK DL
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
+L++LG AGK++++ +F G+ ++ T+G F +TL K IWD GQ+
Sbjct: 20 RLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKS 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADL 127
S Y+ I V D ++ + ++ +Q L + + + NK DL
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ---GN 113
+++ F ++D +GQ RY +L YY+ A I V D +++ AK+ + L +
Sbjct: 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH 124
Query: 114 PNMVMALAGNKADLLDA 130
+ + NK DL DA
Sbjct: 125 RRIPILFFANKMDLRDA 141
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG GAGK++++ R G+ + TIG F +T+ + +KF++WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTS 63
Query: 72 YHSLAPMYYRGAAAAIIVYD 91
YY A I V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW 64
N K++++G AGK++++ +F+ + + TIG+ V + VK F +W
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVH-TSPTIGSN-------VEEIVVKNTHFLMW 65
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GN 123
D GQE S YY I+V D ++ K+ + + A + L N
Sbjct: 66 DIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFAN 125
Query: 124 KADLLDARKVTAEEAQAY 141
K D+ +TA E Y
Sbjct: 126 KQDMKGC--MTAAEISKY 141
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLA-----VNDATVK---FEI 63
K+ L+GD AGK+SL+ + + F + T G ++ ND +K F
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WD GQE H+ + ++ +++ D ++ W++ ++ G + V+ + N
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYGGKSPVIVVM-N 158
Query: 124 KAD 126
K D
Sbjct: 159 KID 161
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++++LG AGK+S++ R G + + +TL + + FE+WD GQ
Sbjct: 24 RVLMLGLDNAGKTSILYRLHLG---DVVTTVPTVGVNLETLQYKN--ISFEVWDLGGQTG 78
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN----MVMALAGNKADL 127
Y+ A I V D T++ AK EL A + + ++ + NK DL
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELRKSLLLIFANKQDL 135
Query: 128 LDA 130
DA
Sbjct: 136 PDA 138
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
+++LLG AGK++L L+ + + I T G S V K +WD GQ
Sbjct: 18 VRILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQR 72
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GNKADLLD 129
+ Y+ I V D ++ FE + + EL + + V L NK DLL
Sbjct: 73 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 132
Query: 130 A 130
A
Sbjct: 133 A 133
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
+++LLG AGK++L L+ + + I T G S V K +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQR 71
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GNKADLLD 129
+ Y+ I V D ++ FE + + EL + + V L NK DLL
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131
Query: 130 A 130
A
Sbjct: 132 A 132
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
+++LLG AGK++L L+ + + I T G S V K +WD GQ
Sbjct: 5 VRILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQR 59
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GNKADLLD 129
+ Y+ I V D ++ FE + + EL + + V L NK DLL
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 119
Query: 130 A 130
A
Sbjct: 120 A 120
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 21 AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80
AGK++++ +F G+ ++ T+G F +TL K IWD GQ+ S Y+
Sbjct: 29 AGKTTILKKF-NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADL 127
I V D ++ + ++ +Q L + + + NK DL
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 30.4 bits (67), Expect = 0.71, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 133 VTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGER 192
VT E +A+A + G+ + A N + ++ R PRV +P + L + GE+
Sbjct: 341 VTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEK 400
Query: 193 TAS 195
T S
Sbjct: 401 TLS 403
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 12 KLVLLGDVGAGKSSL---VLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
+++L+G +GKSS+ V + F EST + ++ N + V F+IWD G
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLEST--NKIYKDDIS-NSSFVNFQIWDFPG 78
Query: 69 QERYHSLA---PMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNK 124
Q + M +RG A I V D + + + +A + NP+M + +K
Sbjct: 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138
Query: 125 AD-LLDARKVTAE 136
D L D K+ +
Sbjct: 139 VDGLSDDHKIETQ 151
>pdb|1AVB|A Chain A, Arcelin-1 From Phaseolus Vulgaris L
pdb|1AVB|B Chain B, Arcelin-1 From Phaseolus Vulgaris L
Length = 226
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 13 LVLLGDVG-AGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV 59
L+L GD + + L+L VKG +E ++G AF+S + +ND T+
Sbjct: 16 LILQGDATVSSEGHLLLTNVKGN----EEDSMGRAFYSAPIQINDRTI 59
>pdb|3OLH|A Chain A, Human 3-Mercaptopyruvate Sulfurtransferase
Length = 302
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 37 EFQESTI-GAAFFSQTLAVNDATVKFEIWDT--AGQERYHSLAPMYYRGAAAAIIVYDIT 93
EF+E I GAAFF ++ + + +D G E + A GAA +++YD +
Sbjct: 61 EFEERHIPGAAFFD----IDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDAS 116
Query: 94 NQASFERAKKW 104
+Q + + W
Sbjct: 117 DQGLYSAPRVW 127
>pdb|4GJ1|A Chain A, Crystal Structure Of
1-(5-Phosphoribosyl)-5-[(5-Phosphoribosylamino)
Methylideneamino] Imidazole-4-Carboxamide Isomerase
(Hisa)
Length = 243
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 9/155 (5%)
Query: 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
+ K V++G ++L L +K EF I A T+ D V W A
Sbjct: 95 DCGVKRVVIGSXAIKDATLCLEILK----EFGSEAIVLAL--DTILKEDYVVAVNAWQEA 148
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA-- 125
++ + Y I+ DI+ + + + +L + PN+ + +G A
Sbjct: 149 SDKKLXEVLDFYSNKGLKHILCTDISKDGTXQGVNVRLYKLIHEIFPNICIQASGGVASL 208
Query: 126 -DLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159
DL + + + + A +G+F +E + N
Sbjct: 209 KDLENLKGICSGVIVGKALLDGVFSVEEGIRCLAN 243
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
+++LLG AGK++L L+ + + I T G S V K +WD G
Sbjct: 5 VRILLLGLDNAGKTTL-LKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGLR 59
Query: 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA-GNKADLLD 129
+ Y+ I V D ++ FE + + EL + + V L NK DLL
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 119
Query: 130 A 130
A
Sbjct: 120 A 120
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
++ +G +GK+ L +R + GQ+ + Q S T +A + N+ + D G E
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN---NNRGNSLTLIDLPGHES 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ---------GNPNMVMALAG 122
++ +A A++ + + A+F+R K V E Q +P++++A
Sbjct: 67 LRFQLLDRFKSSARAVVF--VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC-- 122
Query: 123 NKADLLDARKVTAEEAQAYAQENGLFFMETSA 154
NK D+ A+ + Q + N L ++A
Sbjct: 123 NKQDIAMAKSAKLIQQQLEKELNTLRVTRSAA 154
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF------EIWD 65
KL+L+G G+GKSS+ + + F +GA T+ V + ++F +WD
Sbjct: 8 KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGA-----TIDVEHSHLRFLGNMTLNLWD 61
Query: 66 TAGQERY 72
GQ+ +
Sbjct: 62 CGGQDVF 68
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
Length = 181
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTL-------AVNDATVKF 61
+ +++L G +GKSS+ Q + F + + F ++ N + V F
Sbjct: 3 VKPRILLXGLRRSGKSSI-------QKVVFHKXSPNETLFLESTNKICREDVSNSSFVNF 55
Query: 62 EIWDTAGQERYHSLAPMY---YRGAAAAIIVYD 91
+IWD GQ + Y +RG A I V D
Sbjct: 56 QIWDFPGQIDFFDPTFDYEXIFRGTGALIFVID 88
>pdb|3TY5|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
pdb|3TY5|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
Length = 413
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 IVYDITNQASFERAKKWVQELQAQGNPNMVM 118
I+ D+T+ S ++ KW ++L A G MV+
Sbjct: 286 ILVDVTDAESVDKGIKWWEDLTASGGEGMVV 316
>pdb|3TY9|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|C Chain C, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|D Chain D, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
Length = 393
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 IVYDITNQASFERAKKWVQELQAQGNPNMVM 118
I+ D+T+ S ++ KW ++L A G MV+
Sbjct: 266 ILVDVTDAESVDKGIKWWEDLTASGGEGMVV 296
>pdb|4DRF|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4DRF|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
Length = 427
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 IVYDITNQASFERAKKWVQELQAQGNPNMVM 118
I+ D+T+ S ++ KW ++L A G MV+
Sbjct: 300 ILVDVTDAESVDKGIKWWEDLTASGGEGMVV 330
>pdb|3TY8|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
pdb|3TY8|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
Length = 413
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 IVYDITNQASFERAKKWVQELQAQGNPNMVM 118
I+ D+T+ S ++ KW ++L A G MV+
Sbjct: 286 ILVDVTDAESVDKGIKWWEDLTASGGEGMVV 316
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 70 ERYHSLAPMY-YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
+ H PM +RG A+ +I +A E A + +E P +++ L G K
Sbjct: 652 DELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKK 711
Query: 126 DLLDARKVTAEEAQAYAQENG 146
+L + V E A+ +E G
Sbjct: 712 ELKFVKDVVVEVAEQVKKEKG 732
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 70 ERYHSLAPMY-YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
+ H PM +RG A+ +I +A E A + +E P +++ L G K
Sbjct: 652 DELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKK 711
Query: 126 DLLDARKVTAEEAQAYAQENG 146
+L + V E A+ +E G
Sbjct: 712 ELKFVKDVVVEVAEQVKKEKG 732
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 70 ERYHSLAPMY-YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
+ H PM +RG A+ +I +A E A + +E P +++ L G K
Sbjct: 652 DELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKK 711
Query: 126 DLLDARKVTAEEAQAYAQENG 146
+L + V E A+ +E G
Sbjct: 712 ELKFVKDVVVEVAEQVKKEKG 732
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 70 ERYHSLAPMY-YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
+ H PM +RG A+ +I +A E A + +E P +++ L G K
Sbjct: 652 DELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKK 711
Query: 126 DLLDARKVTAEEAQAYAQENG 146
+L + V E A+ +E G
Sbjct: 712 ELKFVKDVVVEVAEQVKKEKG 732
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 70 ERYHSLAPMY-YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
+ H PM +RG A+ +I +A E A + +E P +++ L G K
Sbjct: 653 DELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKK 712
Query: 126 DLLDARKVTAEEAQAYAQENG 146
+L + V E A+ +E G
Sbjct: 713 ELKFVKDVVVEVAEQVKKEKG 733
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 70 ERYHSLAPMY-YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
+ H PM +RG A+ +I +A E A + +E P +++ L G K
Sbjct: 653 DELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKK 712
Query: 126 DLLDARKVTAEEAQAYAQENG 146
+L + V E A+ +E G
Sbjct: 713 ELKFVKDVVVEVAEQVKKEKG 733
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 49 SQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84
S LA D + IW+ + E H AP+ GAA
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,191,974
Number of Sequences: 62578
Number of extensions: 179822
Number of successful extensions: 1310
Number of sequences better than 100.0: 369
Number of HSP's better than 100.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 370
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)