BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029029
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/200 (89%), Positives = 189/200 (94%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA++GNKNINAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
FEIWDTAGQERYHSLAPMYYRGAAAAIIV+DITNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
AGNKADLLDARKV+AEEA+ YAQEN LFFMETSAKTATNV DIFYEIAKRLPRVQPA NP
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180
Query: 181 SGMVLMDRPGERTASASCCS 200
+GMVL + PG S+SCC+
Sbjct: 181 TGMVLPNGPGATAVSSSCCA 200
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/200 (88%), Positives = 188/200 (94%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
AGNK+DLLDARKVTAE+AQ YAQENGLFFMETSAKTATNV +IFYEIA+RLPRVQP NP
Sbjct: 121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180
Query: 181 SGMVLMDRPGERTASASCCS 200
+GMVL DR +R S+SCC+
Sbjct: 181 TGMVLPDRAMDRAVSSSCCA 200
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 349 bits (895), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 166/200 (83%), Positives = 181/200 (90%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA++ + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS TLAVN+ATVK
Sbjct: 1 MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+ SF RAKKWVQELQ QGNPNMVMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
AGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTA NVN IFYEIAKRLPR QPA NP
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNP 180
Query: 181 SGMVLMDRPGERTASASCCS 200
+GMVL+DR E T + SCC+
Sbjct: 181 AGMVLVDRAAEGTRATSCCT 200
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 348 bits (892), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 164/200 (82%), Positives = 182/200 (91%)
Query: 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
MA+ + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS T++VN+ATVK
Sbjct: 1 MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVK 60
Query: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+ S RAKKWVQELQ QGNPNMVMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMAL 120
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
AGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTATNVNDIFYEIAKRLPR QPA NP
Sbjct: 121 AGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNP 180
Query: 181 SGMVLMDRPGERTASASCCS 200
+GMVL D+P + + +ASCC+
Sbjct: 181 AGMVLEDKPAQGSQAASCCT 200
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/203 (65%), Positives = 155/203 (76%), Gaps = 8/203 (3%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
KADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+ +P NP
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192
Query: 184 ------VLMDRPGERTASASCCS 200
V + P + T S CCS
Sbjct: 193 STRGRGVDLTEPTQPTRS-QCCS 214
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/203 (65%), Positives = 155/203 (76%), Gaps = 8/203 (3%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
KADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+ +P NP
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192
Query: 184 ------VLMDRPGERTASASCCS 200
V + P + T S CCS
Sbjct: 193 SARGRGVDLTEPTQPTRS-QCCS 214
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/203 (65%), Positives = 155/203 (76%), Gaps = 8/203 (3%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
KADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+ +P NP
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192
Query: 184 ------VLMDRPGERTASASCCS 200
V + P + T S CCS
Sbjct: 193 SARGRGVDLTEPTQPTRS-QCCS 214
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/202 (64%), Positives = 154/202 (76%), Gaps = 6/202 (2%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
KADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+ +P NP
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192
Query: 184 VLMDRPGERT-----ASASCCS 200
R + T A + CCS
Sbjct: 193 SARGRGVDLTEPAQPARSQCCS 214
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 261 bits (667), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/204 (65%), Positives = 157/204 (76%), Gaps = 10/204 (4%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
KADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+ +P NP G+
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NP-GI 191
Query: 184 -------VLMDRPGERTASASCCS 200
V + P + T S CCS
Sbjct: 192 NCTRGRGVDLTEPTQPTRS-QCCS 214
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 260 bits (665), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/203 (64%), Positives = 155/203 (76%), Gaps = 8/203 (3%)
Query: 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
TGNK KLVLLG+ GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
KADL + R V +EAQ+YA +N L FMETSAKT+ NVN+IF IAK+LP+ +P NP
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192
Query: 184 ------VLMDRPGERTASASCCS 200
V + P + T + CCS
Sbjct: 193 SARGRGVDLTEPTQPTRN-QCCS 214
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 258 bits (659), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 152/200 (76%), Gaps = 4/200 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNK
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP---APNPS 181
ADL R V +EAQAYA +N L FMETSAKTA NVN+IF IAK+LP+ +P A PS
Sbjct: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPS 195
Query: 182 GMVLMDRPGERTASAS-CCS 200
+D AS S CCS
Sbjct: 196 RNRGVDLQENSPASRSQCCS 215
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 258 bits (659), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 150/195 (76%), Gaps = 8/195 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGNKADL R
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKR 141
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVL 185
V EEAQAYA +N L FMETSAKTA NVND+F IAK+LP+ +P A G+ L
Sbjct: 142 MVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGRSRGVDL 201
Query: 186 MDRPGERTASASCCS 200
++ + + CCS
Sbjct: 202 HEQTQQN--KSQCCS 214
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 258 bits (658), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/203 (64%), Positives = 154/203 (75%), Gaps = 10/203 (4%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNK
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP-----APN 179
ADL R V +EAQAYA++N L FMETSAKTA NVN+IF IAK+LP+ +P AP
Sbjct: 136 ADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPG 195
Query: 180 PSGMVLM--DRPGERTASASCCS 200
+ V + + P R+ CCS
Sbjct: 196 RNRGVDLQENNPASRS---QCCS 215
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 257 bits (657), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 151/200 (75%), Gaps = 4/200 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNK
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP---APNPS 181
ADL R V +EAQAYA +N L FMETSAKTA NVN+IF IAK+LP+ +P A P
Sbjct: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPG 195
Query: 182 GMVLMDRPGERTASAS-CCS 200
+D AS S CCS
Sbjct: 196 RTRGVDLQESNPASRSQCCS 215
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 257 bits (657), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 151/195 (77%), Gaps = 8/195 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGNKADL + R
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKR 141
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVL 185
V EEAQAYA +N L FMETSAKTA NVND+F IAK+LP+ +P A G+ L
Sbjct: 142 MVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDL 201
Query: 186 MDRPGERTASASCCS 200
++ + + CCS
Sbjct: 202 HEQSQQN--KSQCCS 214
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 257 bits (657), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 151/195 (77%), Gaps = 8/195 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGNKADL + R
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKR 141
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVL 185
V EEAQAYA +N L FMETSAKTA NVND+F IAK+LP+ +P A G+ L
Sbjct: 142 MVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDL 201
Query: 186 MDRPGERTASASCCS 200
++ + + CCS
Sbjct: 202 HEQSQQN--KSQCCS 214
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 257 bits (657), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 151/195 (77%), Gaps = 8/195 (4%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEIWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
YHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGNKADL + R
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKR 141
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVL 185
V EEAQAYA +N L FMETSAKTA NVND+F IAK+LP+ +P A G+ L
Sbjct: 142 MVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDL 201
Query: 186 MDRPGERTASASCCS 200
++ + + CCS
Sbjct: 202 HEQSQQN--KSQCCS 214
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 151/200 (75%), Gaps = 4/200 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNK
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNK 135
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSG-- 182
ADL R V ++AQ YA +N L FMETSAKTA NVN+IF IAK+LP+ +P P G
Sbjct: 136 ADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPG 195
Query: 183 --MVLMDRPGERTASASCCS 200
V+ + + + + CCS
Sbjct: 196 RNRVVDLQESSQPSRSQCCS 215
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/203 (64%), Positives = 153/203 (75%), Gaps = 10/203 (4%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNK
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP-----APN 179
ADL R V +EAQAYA +N L FMETSAKTA NVN+IF IAK+LP+ +P AP
Sbjct: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
Query: 180 PSGMVLM--DRPGERTASASCCS 200
+ V + + P R+ CCS
Sbjct: 196 RNRGVDLQENNPASRS---QCCS 215
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/203 (64%), Positives = 153/203 (75%), Gaps = 10/203 (4%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GNK KLVLLG+ GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQERYHSLAPMYYRGA AAI+VYDITN +F RAK WV+ELQ Q +PN+V+ALAGNK
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP-----APN 179
ADL R V +EAQAYA +N L FMETSAKTA NVN+IF IAK+LP+ +P AP
Sbjct: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
Query: 180 PSGMVLM--DRPGERTASASCCS 200
+ V + + P R+ CCS
Sbjct: 196 RNRGVDLQENNPASRS---QCCS 215
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 256 bits (653), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 125/198 (63%), Positives = 149/198 (75%), Gaps = 4/198 (2%)
Query: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
NK KLVLLG+ GKSSLVLRFV+G F+++QESTIGAAF +QT+ +ND TVKFEIWD
Sbjct: 5 NKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWD 64
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
TAGQERYH+LAPMYYRGA AAI+VYDI ++ SFERA KWV+ELQ QG+PN+V+ALAGNK
Sbjct: 65 TAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKL 124
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVL 185
DL RKV EAQ YA+ENGL FMETSAKT+ NVN++F EIAK+LP+ P P +
Sbjct: 125 DLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKT-PTTRPGSGRV 183
Query: 186 MDRP---GERTASASCCS 200
P G CC+
Sbjct: 184 AIAPIDNGNTGKKNKCCN 201
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 230 bits (586), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 138/174 (79%), Gaps = 3/174 (1%)
Query: 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWD 65
KN+ KLVLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFEIWD 89
Query: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
TAGQERY +LAP+YYRGA A+IVYDIT+ SF++A+ WV+ELQ G+P++VMAL GNKA
Sbjct: 90 TAGQERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHGSPDIVMALVGNKA 149
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
DL + R+V E+ A++NG+FF+ETSAKTA N+N +F EI KRLPR PAP+
Sbjct: 150 DLHEKREVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLPR--PAPS 201
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 200 bits (508), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/166 (64%), Positives = 126/166 (75%), Gaps = 2/166 (1%)
Query: 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTA 67
IN KLVLLGD GKSSLVLRFVK QF +++ESTIGAAF +QTL +++ T VK EIWDTA
Sbjct: 13 INQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTA 72
Query: 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
GQERY SLAPMYYR A AI+VYDIT AS E+AK W++ELQ Q +V+ALAGNK DL
Sbjct: 73 GQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDL 132
Query: 128 LDARK-VTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
R+ V +A+AYA E L F ETSAKTA NVN++F IAK+LP
Sbjct: 133 AQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 119/164 (72%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG+ GKSS+VLRFV F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER
Sbjct: 9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 68
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-- 129
+ SLAPMYYR A AA++VYD+T SF +A+ WV+EL Q + ++++AL GNK D+L
Sbjct: 69 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 128
Query: 130 -ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
RKV EE + A+E GL F ETSAKT NVND+F I +++P
Sbjct: 129 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 172
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/189 (50%), Positives = 131/189 (69%), Gaps = 2/189 (1%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G N+VMA+AGNK DL D R
Sbjct: 67 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP-SGMVLMDRPG 190
+V ++A+ YA+ G +ETSAK A N+ ++F I++++P + P N +G + +++P
Sbjct: 127 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHENGNNGTIKVEKPT 186
Query: 191 ERTASASCC 199
+ AS CC
Sbjct: 187 MQ-ASRRCC 194
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 193 bits (490), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 119/168 (70%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G N+VMA+AGNK DL D R
Sbjct: 67 FHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
+V ++A+ YA+ G +ETSAK A N+ ++F I++++P + P N
Sbjct: 127 EVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLDPHEN 174
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 192 bits (489), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 128/190 (67%), Gaps = 4/190 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+HSLAPMYYRG+AAA+IVYDIT Q SF KKWV+EL+ G N+VMA+AGNK DL D R
Sbjct: 67 FHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAP--NPSGMVLMDRP 189
+V ++A+ YA+ G +ETSAK A N+ ++F I++++P + P N G+ L ++
Sbjct: 127 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLGPQENGNSGGIKLGNQ- 185
Query: 190 GERTASASCC 199
AS CC
Sbjct: 186 -SLQASRRCC 194
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 191 bits (485), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 125/190 (65%), Gaps = 4/190 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G P++V+A+AGNK DL D R
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ--PAPNPSGMVLMDRP 189
+V +A+ YA F+ETSAK A N+N++F EI++R+P PA G L +P
Sbjct: 127 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDANPASGGKGFKLRRQP 186
Query: 190 GERTASASCC 199
E SCC
Sbjct: 187 SE--PKRSCC 194
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 127/191 (66%), Gaps = 6/191 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G PN+V+A+AGNK DL+D R
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS---GMVLMDR 188
+V +A+ YA F+ETSAK A N+N++F EI++R+P A PS G L +
Sbjct: 127 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTD-ANLPSGGKGFKLRRQ 185
Query: 189 PGERTASASCC 199
P E SCC
Sbjct: 186 PSE--PKRSCC 194
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 126/191 (65%), Gaps = 6/191 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+ LLGD G GKSS+V RFV+ F TIGA+F ++T+ + KF IWDTAGQE
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEA 66
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ +LAPMYYRG+AAAIIVYDIT + +F K WV+EL+ G PN+V+A+AGNK DL+D R
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS---GMVLMDR 188
+V +A+ YA F+ETSAK A N+N++F EI++R+P P PS G L +
Sbjct: 127 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSADANP-PSGGKGFKLRRQ 185
Query: 189 PGERTASASCC 199
P E SCC
Sbjct: 186 PSE--PQRSCC 194
>sp|P36018|YPT52_YEAST GTP-binding protein YPT52 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT52 PE=1 SV=1
Length = 234
Score = 179 bits (455), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/189 (49%), Positives = 119/189 (62%), Gaps = 29/189 (15%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--------DATVKFEI 63
KLVLLGD GKSS+V RFVK F E +ESTIGAAF SQ++ ++ D +KFEI
Sbjct: 5 KLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEI 64
Query: 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAG 122
WDTAGQERY SLAPMYYR A AA++VYDIT + S ++A+ WV EL+ + G+ ++V+ L G
Sbjct: 65 WDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLG 124
Query: 123 NKADLLD--------------------ARKVTAEEAQAYAQENGLFFMETSAKTATNVND 162
NK DL R ++ EEA+ YAQE GL F E SAKT V +
Sbjct: 125 NKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKE 184
Query: 163 IFYEIAKRL 171
IF +I ++L
Sbjct: 185 IFQDIGEKL 193
>sp|Q54RX9|RAB5B_DICDI Putative ras-related protein Rab-5B OS=Dictyostelium discoideum
GN=rab5B PE=5 SV=1
Length = 214
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 116/162 (71%), Gaps = 5/162 (3%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVLLG++ GK+ + R V+ +F +STIGAAF +++ V++ +K EIWDTAGQER
Sbjct: 51 KLVLLGEMNTGKTCISSRLVRNEFGP-TDSTIGAAFLVKSMVVDNINIKLEIWDTAGQER 109
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y SL PMYYRGAAAA++VYDIT + +FE K+WV ELQ +PN+++ALAGNK DL + R
Sbjct: 110 YRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQKHASPNLILALAGNKVDLPN-R 168
Query: 132 KVTAEEAQAYAQE--NGLFFMETSAKTATNVNDIFYEIAKRL 171
+V +E Y E N +FF ETSA + N+N++F EI +RL
Sbjct: 169 EVQVDEVNRYISELGNAIFF-ETSAASGQNINELFTEICRRL 209
>sp|P17610|YPT3_SCHPO GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt3 PE=1 SV=1
Length = 214
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 15/203 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K VL+GD G GKS+L++RF + +F +STIG F ++ + +++ +K +IWDTAGQER
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A+IVYDIT Q+SF+ +W++EL+ + N+V+ L GNK DLL R
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLR 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV---------QPAPNPS- 181
V+ EEAQA+A EN L F+ETSA A+NV + F + + R+ +P+
Sbjct: 132 AVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHPTA 191
Query: 182 GMVL-----MDRPGERTASASCC 199
G L M+ ++ +S+ CC
Sbjct: 192 GQTLNIAPTMNDLNKKKSSSQCC 214
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ryh1 PE=1 SV=1
Length = 201
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 122/190 (64%), Gaps = 4/190 (2%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLV LG+ GK+SL+ RF+ QF ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
+ SL P Y R ++ AIIVYDITN SF +KW+++++A+ ++++ L GNK DL D R
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKR 132
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMD---R 188
+VT EE + A+E + METSAK NV +F +IA+ LP ++ S ++D +
Sbjct: 133 QVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQSTQ-MIDVSIQ 191
Query: 189 PGERTASASC 198
P E +S +C
Sbjct: 192 PNENESSCNC 201
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 4/200 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--G 182
DL D R++T EE + A+E + F+ETSAKT NV +F +A LP ++ S G
Sbjct: 128 TDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEG 187
Query: 183 M--VLMDRPGERTASASCCS 200
M + +D+P E AS CS
Sbjct: 188 MIDIKLDKPQEPPASEGGCS 207
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 4/200 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--G 182
DL D R++T EE + A+E + F+ETSAKT NV +F +A LP ++ S G
Sbjct: 128 TDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEG 187
Query: 183 M--VLMDRPGERTASASCCS 200
M + +D+P E AS CS
Sbjct: 188 MIDIKLDKPQEPPASEGGCS 207
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 4/200 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D TV+ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+ SL P Y R + A++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--G 182
DL D R++T EE + A+E + F+ETSAKT NV +F +A LP ++ S G
Sbjct: 128 TDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEG 187
Query: 183 M--VLMDRPGERTASASCCS 200
M + +D+P E AS CS
Sbjct: 188 MIDIKLDKPQEPPASEGGCS 207
>sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1
Length = 217
Score = 167 bits (423), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 123/203 (60%), Gaps = 16/203 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GKS+L+ RF + +F +STIG F ++++ V+D VK +IWDTAGQER
Sbjct: 16 KLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQER 75
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDIT +FE ++W++EL+ + N+V+ L GNKADL R
Sbjct: 76 YRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLR 135
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV----------QPAPNPS 181
V+ E+A+A+A+ FFMETSA + NV + F E+ + +V PA P
Sbjct: 136 AVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPK 195
Query: 182 GMVLMDRPGERTASA----SCCS 200
G + G+ SA CCS
Sbjct: 196 GQTI--NVGKDDVSAVKKVGCCS 216
>sp|P28185|RAA1A_ARATH Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=1
SV=1
Length = 216
Score = 167 bits (423), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 112/171 (65%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GKS+L+ RF K +F +STIG F ++T V VK +IWDTAGQER
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A+++YD+T A+FE A +W++EL+ +PN+V+ L GNK DL
Sbjct: 75 YRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLV 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSG 182
V EEA+A+A+ L+FMETSA ATNV + F E+ ++ ++ + G
Sbjct: 135 AVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDG 185
>sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2
SV=1
Length = 216
Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 112/163 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF K +F +STIG F ++TL V+ VK +IWDTAGQER
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYD+T +A+FE +W++EL+ +PN+V+ L GNK+DL
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLL 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
V E+ ++YA++ L FMETSA ATNV D F E+ ++ R+
Sbjct: 135 AVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRI 177
>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
Length = 218
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 113/163 (69%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GKS+L+ RF K +F +STIG F ++TL V+ VK +IWDTAGQER
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYD+T +A+FE A +W++EL+ +PN+V+ L GNK+DL
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLV 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
V E+ +++A+ L+FMETSA ATNV + F E+ ++ R+
Sbjct: 135 AVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRI 177
>sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2
SV=1
Length = 217
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 13/202 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V+D VK +IWDTAGQER
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYD+T +FE ++W++EL+ + N+V+ GNKADL R
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMFVGNKADLRHLR 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV----------QPAPNPS 181
V+ E+A+A+A+ FFMETSA + NV + F E+ ++ RV PA P
Sbjct: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSRKALDIGDDPAALPK 194
Query: 182 GMVLMDRPGERTASAS---CCS 200
G + + ++ CCS
Sbjct: 195 GQTINVGSKDDVSAVKKVGCCS 216
>sp|O49513|RAA1E_ARATH Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2
SV=1
Length = 217
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 124/202 (61%), Gaps = 13/202 (6%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GKS+L+ RF + +F +STIG F ++++ V++ +K ++WDTAGQER
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEKIIKAQLWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDIT +FE ++W++EL+ + N+V+ L GNKADL R
Sbjct: 75 YRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVVIMLVGNKADLRHLR 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV----------QPAPNPS 181
V EEA+++++ +FFMETSA ATNV F + ++ RV P P
Sbjct: 135 AVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSRKALDGTGDPMSLPK 194
Query: 182 GMVL-MDRPGERTA--SASCCS 200
G + + + TA S+ CCS
Sbjct: 195 GQTIDIGNKDDVTAVKSSGCCS 216
>sp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1
SV=1
Length = 216
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 125/201 (62%), Gaps = 12/201 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF K +F +STIG F +++L V+D +K +IWDTAGQER
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYD+T ++FE + W++EL+ +PN+V+ L GNK+DL
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLV 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV----------QPAPNPS 181
V E+A+++A++ L+FMETSA ATNV + F E+ ++ + + A PS
Sbjct: 135 AVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPS 194
Query: 182 GMVLMDRPGERTA--SASCCS 200
+D + +A CCS
Sbjct: 195 KGDKIDIGKDVSAVKKGGCCS 215
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 123/200 (61%), Gaps = 4/200 (2%)
Query: 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
GN KLV LG+ GK+SL+ RF+ F ++TIG F S+T+ + D T++ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
DTAGQER+ SL P Y R +AAA++VYDITN SF++ KW+ +++ + ++++ L GNK
Sbjct: 68 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 184
DL D R+V+ EE + A+E + F+ETSAK NV +F +A LP ++ + S
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSRED 187
Query: 185 LMD----RPGERTASASCCS 200
++D +P E+ S CS
Sbjct: 188 MIDIKLEKPQEQPVSEGGCS 207
>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1
Length = 222
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 125/205 (60%), Gaps = 16/205 (7%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD GKS ++ RF + +F ++TIG F ++TLA+ +VK +IWDTAGQER
Sbjct: 17 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQER 76
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYDIT + +F+ +W++EL+A + N+V+ L GNK DL D R
Sbjct: 77 YRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQR 136
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV-----------QPAPNP 180
V E+A+ +AQ+ GLFF+ETSA ATN+ D F + + + Q NP
Sbjct: 137 AVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNP 196
Query: 181 SGM----VLMDRPGERT-ASASCCS 200
+ + +L+ PG+ +CCS
Sbjct: 197 ASLTGKKILVPGPGQVIPEKKACCS 221
>sp|Q40195|RB11E_LOTJA Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1
Length = 218
Score = 164 bits (414), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 113/163 (69%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
KLVL+GD G GKS+L+ RF + +F +STIG F +++L ++ +K +IWDTAGQER
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYD+T +FE A +W++EL+ +PN+V+ L GNK+DL
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLV 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
V+ E+ +A+A++ L+FMETSA ATNV + F E+ ++ R+
Sbjct: 135 TVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRI 177
>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2
SV=1
Length = 214
Score = 163 bits (413), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 122/199 (61%), Gaps = 10/199 (5%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F +++L VN+ +K +IWDTAGQER
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYD+T ++FE ++W++EL+ +PN+V+ L GNK+DL
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGNKSDLRHLV 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV-----QPAPNPSGMV-- 184
V E+A+++A+ L+FMETSA +TNV + F E+ ++ V A SG V
Sbjct: 135 AVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAMEAGEDSGNVPS 194
Query: 185 ---LMDRPGERTASASCCS 200
+D CCS
Sbjct: 195 KGEKIDVDVSAVKKTGCCS 213
>sp|Q9LK99|RAA1G_ARATH Ras-related protein RABA1g OS=Arabidopsis thaliana GN=RABA1G PE=2
SV=1
Length = 217
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 111/163 (68%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL+GD G GKS+L+ RF + +F +STIG F ++++ V++ VK +IWDTAGQER
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEKIVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYD+T +FE ++W++EL+ N+V+ L GNKADL R
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIVIMLVGNKADLRHLR 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
V+ E+A+A+A+ FFMETSA A NV + F E+ ++ RV
Sbjct: 135 AVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRV 177
>sp|Q9S810|RAA1I_ARATH Ras-related protein RABA1i OS=Arabidopsis thaliana GN=RABA1I PE=2
SV=1
Length = 218
Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 109/163 (66%)
Query: 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
K+VL GD G GKS+L+ RF + F +TIG F ++++ +D VK +IWDTAGQER
Sbjct: 15 KVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDKIVKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Y ++ YYRGA A++VYD+T +FE ++W++EL+ + N+V+ L GNKADL R
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLR 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
++ EEA+A+A+ FFMETSA A NV++ F E+ ++ RV
Sbjct: 135 AISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRV 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,866,784
Number of Sequences: 539616
Number of extensions: 2352595
Number of successful extensions: 11694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 9763
Number of HSP's gapped (non-prelim): 1264
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)