Query 029029
Match_columns 200
No_of_seqs 147 out of 1781
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 9.6E-43 2.1E-47 241.6 20.0 176 5-180 4-180 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 7.4E-42 1.6E-46 236.3 20.8 193 7-200 2-200 (200)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.1E-41 1.3E-45 231.9 20.7 199 2-200 14-221 (221)
4 KOG0078 GTP-binding protein SE 100.0 2.5E-38 5.5E-43 222.6 20.9 172 6-177 8-179 (207)
5 KOG0080 GTPase Rab18, small G 100.0 6.4E-38 1.4E-42 210.3 18.7 170 6-175 7-177 (209)
6 cd04121 Rab40 Rab40 subfamily. 100.0 3.2E-37 6.9E-42 222.3 23.2 170 8-178 4-173 (189)
7 KOG0098 GTPase Rab2, small G p 100.0 1.5E-37 3.3E-42 213.5 18.5 168 6-173 2-169 (216)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.2E-37 9.1E-42 224.6 21.8 189 11-199 1-201 (201)
9 cd04120 Rab12 Rab12 subfamily. 100.0 1.8E-36 4E-41 220.3 21.8 164 11-174 1-165 (202)
10 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.6E-37 1.2E-41 215.0 17.7 170 5-174 9-178 (222)
11 cd04112 Rab26 Rab26 subfamily. 100.0 1.6E-35 3.4E-40 214.6 22.9 189 11-199 1-191 (191)
12 KOG0394 Ras-related GTPase [Ge 100.0 3.3E-36 7.2E-41 206.5 17.6 170 8-177 7-183 (210)
13 cd04125 RabA_like RabA-like su 100.0 2.3E-35 5E-40 213.3 22.7 185 11-198 1-185 (188)
14 cd04110 Rab35 Rab35 subfamily. 100.0 3.1E-35 6.8E-40 214.3 23.0 191 8-199 4-199 (199)
15 cd04144 Ras2 Ras2 subfamily. 100.0 2.1E-35 4.5E-40 213.8 20.9 185 12-200 1-188 (190)
16 PLN03110 Rab GTPase; Provision 100.0 7.8E-35 1.7E-39 214.6 23.7 166 8-173 10-175 (216)
17 cd04122 Rab14 Rab14 subfamily. 100.0 6.2E-35 1.3E-39 207.0 21.3 163 10-172 2-164 (166)
18 PTZ00369 Ras-like protein; Pro 100.0 5E-35 1.1E-39 211.6 20.8 184 8-199 3-187 (189)
19 cd04126 Rab20 Rab20 subfamily. 100.0 6.2E-35 1.3E-39 214.5 20.9 184 11-199 1-220 (220)
20 cd04111 Rab39 Rab39 subfamily. 100.0 1.5E-34 3.2E-39 212.3 22.8 165 10-174 2-168 (211)
21 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1E-34 2.2E-39 208.3 20.9 163 6-170 1-178 (182)
22 cd01867 Rab8_Rab10_Rab13_like 100.0 2.1E-34 4.5E-39 204.6 21.3 165 9-173 2-166 (167)
23 cd04133 Rop_like Rop subfamily 100.0 2.1E-34 4.5E-39 205.5 21.1 159 11-171 2-172 (176)
24 cd04117 Rab15 Rab15 subfamily. 100.0 3.2E-34 6.9E-39 202.4 21.7 160 11-170 1-160 (161)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2E-34 4.3E-39 205.5 20.6 165 10-175 2-167 (172)
26 KOG0091 GTPase Rab39, small G 100.0 1.9E-35 4.1E-40 199.0 14.1 193 8-200 6-213 (213)
27 KOG0079 GTP-binding protein H- 100.0 1.3E-35 2.9E-40 196.6 12.8 165 9-174 7-171 (198)
28 cd01875 RhoG RhoG subfamily. 100.0 6.1E-34 1.3E-38 206.2 22.3 163 9-173 2-178 (191)
29 cd01865 Rab3 Rab3 subfamily. 100.0 5E-34 1.1E-38 202.2 21.2 162 11-172 2-163 (165)
30 KOG0093 GTPase Rab3, small G p 100.0 5.1E-35 1.1E-39 193.6 14.7 169 8-176 19-187 (193)
31 cd04118 Rab24 Rab24 subfamily. 100.0 1.5E-33 3.3E-38 204.6 23.6 186 11-199 1-193 (193)
32 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6.5E-34 1.4E-38 201.7 21.1 163 10-172 2-164 (166)
33 cd04119 RJL RJL (RabJ-Like) su 100.0 9.3E-34 2E-38 200.9 21.2 162 11-172 1-167 (168)
34 cd04131 Rnd Rnd subfamily. Th 100.0 1E-33 2.2E-38 202.6 20.6 159 10-170 1-174 (178)
35 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.1E-33 4.5E-38 207.6 22.7 165 8-174 11-190 (232)
36 cd04127 Rab27A Rab27a subfamil 100.0 1.1E-33 2.4E-38 203.1 20.5 165 9-173 3-178 (180)
37 PF00071 Ras: Ras family; Int 100.0 1.6E-33 3.5E-38 198.9 20.8 161 12-172 1-161 (162)
38 cd04109 Rab28 Rab28 subfamily. 100.0 2.6E-33 5.7E-38 206.5 22.3 164 11-174 1-168 (215)
39 cd01868 Rab11_like Rab11-like. 100.0 2.6E-33 5.7E-38 198.4 21.5 163 9-171 2-164 (165)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.7E-33 3.7E-38 202.2 20.6 164 11-175 1-169 (182)
41 cd04113 Rab4 Rab4 subfamily. 100.0 2.8E-33 6.1E-38 197.5 21.3 161 11-171 1-161 (161)
42 cd01864 Rab19 Rab19 subfamily. 100.0 3E-33 6.4E-38 198.2 21.4 163 9-171 2-165 (165)
43 cd04136 Rap_like Rap-like subf 100.0 3E-33 6.5E-38 197.6 20.6 161 10-171 1-162 (163)
44 cd01866 Rab2 Rab2 subfamily. 100.0 4.9E-33 1.1E-37 197.7 21.6 165 9-173 3-167 (168)
45 cd04175 Rap1 Rap1 subgroup. T 100.0 3.7E-33 8E-38 197.5 20.5 162 10-172 1-163 (164)
46 KOG0086 GTPase Rab4, small G p 100.0 8.1E-34 1.8E-38 189.2 15.9 166 7-172 6-171 (214)
47 cd04132 Rho4_like Rho4-like su 100.0 4.1E-33 9E-38 201.3 20.9 178 11-199 1-185 (187)
48 PLN03108 Rab family protein; P 100.0 1.3E-32 2.8E-37 202.0 23.3 167 8-174 4-170 (210)
49 PLN03071 GTP-binding nuclear p 100.0 7.5E-33 1.6E-37 204.3 22.1 164 8-174 11-174 (219)
50 smart00175 RAB Rab subfamily o 100.0 7.9E-33 1.7E-37 195.5 21.1 163 11-173 1-163 (164)
51 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.3E-33 1.8E-37 197.6 20.9 159 11-171 2-174 (175)
52 cd04106 Rab23_lke Rab23-like s 100.0 8.3E-33 1.8E-37 195.2 20.6 159 11-170 1-161 (162)
53 PLN03118 Rab family protein; P 100.0 2.7E-32 5.8E-37 200.6 23.5 171 5-176 9-181 (211)
54 KOG0095 GTPase Rab30, small G 100.0 8.7E-34 1.9E-38 188.4 14.0 167 7-173 4-170 (213)
55 cd04176 Rap2 Rap2 subgroup. T 100.0 1.5E-32 3.2E-37 194.2 21.0 161 10-171 1-162 (163)
56 cd00877 Ran Ran (Ras-related n 100.0 1.4E-32 3.1E-37 194.9 21.0 160 11-173 1-160 (166)
57 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.4E-32 3.1E-37 195.5 21.0 162 12-173 2-166 (170)
58 cd01861 Rab6 Rab6 subfamily. 100.0 2.1E-32 4.6E-37 192.9 21.4 161 11-171 1-161 (161)
59 KOG0088 GTPase Rab21, small G 100.0 8.6E-34 1.9E-38 190.1 12.5 170 6-175 9-178 (218)
60 cd01860 Rab5_related Rab5-rela 100.0 3.4E-32 7.4E-37 192.2 21.5 162 10-171 1-162 (163)
61 cd04140 ARHI_like ARHI subfami 100.0 2.5E-32 5.3E-37 193.5 20.6 159 11-170 2-163 (165)
62 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.3E-32 9.4E-37 199.6 22.5 162 10-173 1-177 (222)
63 cd04116 Rab9 Rab9 subfamily. 100.0 4.2E-32 9.1E-37 193.2 21.5 164 7-171 2-170 (170)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.1E-32 6.8E-37 193.9 20.8 162 10-171 2-168 (170)
65 cd04124 RabL2 RabL2 subfamily. 100.0 4.4E-32 9.4E-37 191.5 20.8 160 11-174 1-160 (161)
66 cd04134 Rho3 Rho3 subfamily. 100.0 4.5E-32 9.7E-37 196.2 21.3 163 11-175 1-177 (189)
67 smart00173 RAS Ras subfamily o 100.0 3.3E-32 7.2E-37 192.5 20.1 162 11-173 1-163 (164)
68 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.5E-32 1.2E-36 191.3 21.2 161 10-171 2-163 (164)
69 cd01871 Rac1_like Rac1-like su 100.0 5.1E-32 1.1E-36 193.4 20.8 159 10-170 1-173 (174)
70 cd04142 RRP22 RRP22 subfamily. 100.0 6E-32 1.3E-36 196.5 21.1 169 11-179 1-181 (198)
71 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.6E-32 1.4E-36 190.3 20.8 160 10-171 1-161 (162)
72 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.8E-31 3.9E-36 188.7 20.7 160 11-171 1-163 (164)
73 smart00176 RAN Ran (Ras-relate 100.0 1.5E-31 3.2E-36 194.2 19.8 156 16-174 1-156 (200)
74 cd04123 Rab21 Rab21 subfamily. 100.0 4.2E-31 9.1E-36 186.2 21.5 161 11-171 1-161 (162)
75 cd04114 Rab30 Rab30 subfamily. 100.0 9.5E-31 2.1E-35 185.9 22.4 165 7-171 4-168 (169)
76 cd04143 Rhes_like Rhes_like su 100.0 5.3E-31 1.1E-35 197.2 21.6 163 11-174 1-173 (247)
77 cd01873 RhoBTB RhoBTB subfamil 100.0 4.3E-31 9.4E-36 191.4 20.3 158 10-170 2-194 (195)
78 cd04103 Centaurin_gamma Centau 100.0 5.6E-31 1.2E-35 185.1 20.3 154 11-171 1-158 (158)
79 cd01863 Rab18 Rab18 subfamily. 100.0 1.2E-30 2.5E-35 184.1 21.5 160 11-171 1-161 (161)
80 cd04177 RSR1 RSR1 subgroup. R 100.0 8.8E-31 1.9E-35 186.1 20.9 162 10-172 1-164 (168)
81 cd01862 Rab7 Rab7 subfamily. 100.0 1E-30 2.3E-35 186.1 21.3 164 11-174 1-169 (172)
82 smart00174 RHO Rho (Ras homolo 100.0 5.8E-31 1.3E-35 187.9 20.0 158 13-172 1-172 (174)
83 cd04146 RERG_RasL11_like RERG/ 100.0 5.1E-31 1.1E-35 186.7 19.1 160 12-172 1-164 (165)
84 cd01892 Miro2 Miro2 subfamily. 100.0 5E-31 1.1E-35 187.5 18.7 163 9-173 3-167 (169)
85 cd00154 Rab Rab family. Rab G 100.0 1.1E-30 2.4E-35 183.0 20.2 159 11-169 1-159 (159)
86 KOG0097 GTPase Rab14, small G 100.0 7.5E-31 1.6E-35 173.1 16.9 169 6-174 7-175 (215)
87 KOG0083 GTPase Rab26/Rab37, sm 100.0 3.5E-33 7.5E-38 182.2 5.6 167 15-181 2-169 (192)
88 cd04148 RGK RGK subfamily. Th 100.0 1.9E-30 4.1E-35 191.7 20.6 163 11-175 1-166 (221)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.2E-30 6.9E-35 184.0 20.6 157 11-169 1-171 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 4.3E-30 9.3E-35 183.4 20.7 159 11-171 1-173 (174)
91 KOG0081 GTPase Rab27, small G 100.0 4E-32 8.6E-37 182.3 7.3 171 4-174 3-183 (219)
92 cd00876 Ras Ras family. The R 100.0 1.3E-29 2.8E-34 178.2 19.9 159 12-171 1-160 (160)
93 cd04139 RalA_RalB RalA/RalB su 100.0 1.8E-29 3.8E-34 178.3 20.4 161 11-172 1-162 (164)
94 cd04129 Rho2 Rho2 subfamily. 100.0 3.3E-29 7.2E-34 180.9 21.7 165 10-176 1-177 (187)
95 cd04137 RheB Rheb (Ras Homolog 100.0 4.4E-29 9.5E-34 179.2 20.4 165 11-176 2-167 (180)
96 cd04149 Arf6 Arf6 subfamily. 100.0 9.1E-30 2E-34 180.8 16.2 155 8-169 7-167 (168)
97 cd01870 RhoA_like RhoA-like su 100.0 7.2E-29 1.6E-33 177.2 20.6 160 10-171 1-174 (175)
98 cd04147 Ras_dva Ras-dva subfam 100.0 5E-29 1.1E-33 181.5 19.8 161 12-173 1-164 (198)
99 cd04158 ARD1 ARD1 subfamily. 100.0 2.3E-29 4.9E-34 179.0 16.8 157 12-175 1-164 (169)
100 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.9E-30 8.4E-35 182.0 12.6 153 12-169 1-163 (164)
101 PLN00223 ADP-ribosylation fact 100.0 2.4E-29 5.3E-34 180.6 16.4 159 8-173 15-179 (181)
102 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 6.2E-29 1.4E-33 178.9 17.6 165 9-176 2-174 (183)
103 cd00157 Rho Rho (Ras homology) 100.0 2.5E-28 5.4E-33 173.7 20.3 157 11-169 1-170 (171)
104 KOG0395 Ras-related GTPase [Ge 100.0 1.1E-28 2.5E-33 177.9 17.9 167 9-176 2-169 (196)
105 smart00177 ARF ARF-like small 100.0 1.2E-28 2.5E-33 176.3 17.8 157 8-171 11-173 (175)
106 PTZ00132 GTP-binding nuclear p 100.0 6.5E-28 1.4E-32 177.8 22.1 167 5-174 4-170 (215)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.9E-29 4.2E-34 177.6 13.1 152 11-169 1-158 (159)
108 cd04154 Arl2 Arl2 subfamily. 100.0 1.5E-28 3.2E-33 175.4 17.1 157 6-169 10-172 (173)
109 PTZ00133 ADP-ribosylation fact 100.0 2.2E-28 4.7E-33 175.8 17.4 159 8-173 15-179 (182)
110 cd01893 Miro1 Miro1 subfamily. 100.0 1.1E-27 2.5E-32 169.7 18.9 160 11-173 1-165 (166)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 8.8E-28 1.9E-32 171.6 17.0 154 9-169 14-173 (174)
112 KOG0393 Ras-related small GTPa 100.0 1.8E-28 4E-33 173.5 12.8 167 8-176 2-183 (198)
113 cd04157 Arl6 Arl6 subfamily. 100.0 7.7E-28 1.7E-32 169.7 15.8 152 12-169 1-161 (162)
114 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.3E-27 4.9E-32 172.3 18.4 147 11-157 1-175 (202)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.5E-28 7.5E-33 172.5 13.0 151 12-169 1-166 (167)
116 PF00025 Arf: ADP-ribosylation 100.0 3.3E-27 7.1E-32 168.6 16.7 159 6-171 10-175 (175)
117 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.3E-27 7.2E-32 167.4 16.5 152 12-169 1-166 (167)
118 cd00879 Sar1 Sar1 subfamily. 100.0 4.4E-27 9.5E-32 170.2 16.9 158 7-171 16-190 (190)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.7E-27 5.9E-32 166.7 14.7 152 12-169 1-159 (160)
120 KOG0073 GTP-binding ADP-ribosy 100.0 5.5E-27 1.2E-31 158.2 14.9 163 7-174 13-180 (185)
121 PTZ00099 rab6; Provisional 100.0 4.8E-26 1E-30 162.4 19.5 144 33-176 3-146 (176)
122 cd00878 Arf_Arl Arf (ADP-ribos 100.0 5.4E-27 1.2E-31 164.9 14.5 151 12-169 1-157 (158)
123 cd04151 Arl1 Arl1 subfamily. 99.9 1.3E-26 2.9E-31 163.0 16.0 151 12-169 1-157 (158)
124 KOG4252 GTP-binding protein [S 99.9 5.4E-29 1.2E-33 170.4 2.6 169 8-177 18-186 (246)
125 smart00178 SAR Sar1p-like memb 99.9 3.1E-26 6.8E-31 164.9 17.1 157 8-171 15-184 (184)
126 PLN00023 GTP-binding protein; 99.9 7.5E-26 1.6E-30 172.2 18.1 141 7-147 18-189 (334)
127 cd01890 LepA LepA subfamily. 99.9 1.9E-25 4.1E-30 160.1 17.0 154 12-171 2-176 (179)
128 cd01897 NOG NOG1 is a nucleola 99.9 1.7E-25 3.6E-30 158.8 15.6 155 12-171 2-167 (168)
129 cd01898 Obg Obg subfamily. Th 99.9 1.7E-25 3.7E-30 158.9 14.5 157 12-171 2-170 (170)
130 KOG0070 GTP-binding ADP-ribosy 99.9 2E-25 4.4E-30 154.3 13.9 161 7-174 14-180 (181)
131 cd04159 Arl10_like Arl10-like 99.9 1.7E-25 3.6E-30 156.8 13.8 152 12-169 1-158 (159)
132 cd04155 Arl3 Arl3 subfamily. 99.9 6.6E-25 1.4E-29 156.4 17.0 157 6-169 10-172 (173)
133 TIGR00231 small_GTP small GTP- 99.9 1.8E-24 3.8E-29 151.2 18.2 158 10-168 1-160 (161)
134 PRK12299 obgE GTPase CgtA; Rev 99.9 3.5E-25 7.6E-30 171.9 15.7 162 11-174 159-330 (335)
135 PRK15494 era GTPase Era; Provi 99.9 1.3E-24 2.8E-29 169.7 16.8 173 8-191 50-233 (339)
136 cd01878 HflX HflX subfamily. 99.9 9.8E-25 2.1E-29 159.7 15.1 157 8-171 39-204 (204)
137 TIGR00436 era GTP-binding prot 99.9 1.4E-24 2.9E-29 165.1 15.6 170 12-190 2-180 (270)
138 cd04171 SelB SelB subfamily. 99.9 2.4E-24 5.3E-29 152.0 15.0 152 11-169 1-163 (164)
139 COG1100 GTPase SAR1 and relate 99.9 1.3E-23 2.8E-28 155.3 18.1 167 9-175 4-188 (219)
140 cd00882 Ras_like_GTPase Ras-li 99.9 1.6E-23 3.5E-28 145.1 17.4 154 15-169 1-157 (157)
141 KOG3883 Ras family small GTPas 99.9 2.6E-23 5.6E-28 139.0 16.8 169 8-176 7-179 (198)
142 TIGR02528 EutP ethanolamine ut 99.9 1.7E-24 3.7E-29 149.6 11.1 134 12-168 2-141 (142)
143 cd01891 TypA_BipA TypA (tyrosi 99.9 3.6E-24 7.8E-29 155.5 12.6 162 11-176 3-192 (194)
144 PRK04213 GTP-binding protein; 99.9 2.1E-24 4.4E-29 157.6 11.1 156 8-176 7-196 (201)
145 PF02421 FeoB_N: Ferrous iron 99.9 2E-24 4.2E-29 149.3 10.2 148 11-167 1-156 (156)
146 cd01879 FeoB Ferrous iron tran 99.9 3.8E-23 8.3E-28 145.0 16.3 148 15-171 1-156 (158)
147 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.2E-23 4.7E-28 147.8 15.1 157 12-172 2-166 (168)
148 TIGR03156 GTP_HflX GTP-binding 99.9 6.5E-23 1.4E-27 160.4 17.2 154 9-170 188-350 (351)
149 TIGR02729 Obg_CgtA Obg family 99.9 6.6E-23 1.4E-27 159.1 16.7 158 11-171 158-328 (329)
150 cd01881 Obg_like The Obg-like 99.9 1.8E-23 3.8E-28 149.3 12.3 155 15-171 1-176 (176)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 6.2E-23 1.3E-27 143.6 14.6 147 11-171 2-156 (157)
152 COG1159 Era GTPase [General fu 99.9 4.6E-23 1E-27 153.1 14.4 179 7-192 3-190 (298)
153 PF08477 Miro: Miro-like prote 99.9 9.7E-23 2.1E-27 136.6 13.1 114 12-126 1-119 (119)
154 PRK00089 era GTPase Era; Revie 99.9 1.8E-22 3.9E-27 155.3 16.3 176 8-190 3-187 (292)
155 cd01894 EngA1 EngA1 subfamily. 99.9 9.3E-23 2E-27 142.8 12.8 148 14-171 1-157 (157)
156 PRK12298 obgE GTPase CgtA; Rev 99.9 1.5E-22 3.2E-27 160.1 15.1 174 12-190 161-349 (390)
157 KOG0071 GTP-binding ADP-ribosy 99.9 3.5E-22 7.5E-27 131.8 14.1 159 8-173 15-179 (180)
158 cd00881 GTP_translation_factor 99.9 1.8E-22 3.9E-27 145.6 14.0 157 12-172 1-187 (189)
159 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.1E-22 4.6E-27 161.7 15.4 153 8-175 201-363 (442)
160 PRK12297 obgE GTPase CgtA; Rev 99.9 8.1E-22 1.8E-26 156.8 17.4 158 12-175 160-330 (424)
161 cd01889 SelB_euk SelB subfamil 99.9 2.8E-22 6E-27 145.4 13.6 160 11-174 1-188 (192)
162 cd01888 eIF2_gamma eIF2-gamma 99.9 3.2E-22 7E-27 146.1 13.5 161 11-173 1-200 (203)
163 PRK05291 trmE tRNA modificatio 99.9 2.6E-22 5.5E-27 162.0 13.6 148 9-173 214-371 (449)
164 PRK03003 GTP-binding protein D 99.9 4.8E-22 1E-26 161.9 15.2 155 9-173 37-200 (472)
165 PRK15467 ethanolamine utilizat 99.9 3.4E-22 7.5E-27 140.3 12.5 143 12-176 3-151 (158)
166 TIGR01393 lepA GTP-binding pro 99.9 1.6E-21 3.5E-26 161.8 18.0 159 11-175 4-183 (595)
167 cd04163 Era Era subfamily. Er 99.9 2E-21 4.4E-26 137.0 15.1 158 9-171 2-168 (168)
168 PRK00454 engB GTP-binding prot 99.9 1.8E-21 3.8E-26 141.5 14.8 159 8-173 22-195 (196)
169 PRK11058 GTPase HflX; Provisio 99.9 1.9E-21 4.2E-26 155.4 16.1 157 11-173 198-363 (426)
170 cd01895 EngA2 EngA2 subfamily. 99.9 3.1E-21 6.8E-26 137.0 15.4 154 10-170 2-173 (174)
171 PRK12296 obgE GTPase CgtA; Rev 99.9 1E-21 2.2E-26 158.2 14.2 164 10-176 159-344 (500)
172 PRK03003 GTP-binding protein D 99.9 6.4E-22 1.4E-26 161.1 13.0 159 9-174 210-384 (472)
173 KOG0075 GTP-binding ADP-ribosy 99.9 3.6E-22 7.7E-27 132.7 9.1 156 9-173 19-183 (186)
174 TIGR03594 GTPase_EngA ribosome 99.9 4.4E-21 9.5E-26 155.1 16.7 160 8-173 170-345 (429)
175 KOG1673 Ras GTPases [General f 99.9 2.9E-21 6.3E-26 129.6 12.6 167 6-173 16-187 (205)
176 TIGR00487 IF-2 translation ini 99.9 1.8E-20 3.9E-25 154.9 18.2 155 8-170 85-248 (587)
177 TIGR03598 GTPase_YsxC ribosome 99.9 4.8E-21 1E-25 137.4 13.0 148 7-161 15-179 (179)
178 PRK09554 feoB ferrous iron tra 99.9 2.7E-20 5.9E-25 157.9 18.9 155 9-172 2-168 (772)
179 KOG0076 GTP-binding ADP-ribosy 99.9 1.2E-21 2.7E-26 133.7 8.6 161 7-174 14-189 (197)
180 TIGR00475 selB selenocysteine- 99.9 1.8E-20 4E-25 155.3 16.7 156 11-175 1-169 (581)
181 PF00009 GTP_EFTU: Elongation 99.9 2.3E-21 4.9E-26 140.1 9.5 160 9-172 2-187 (188)
182 TIGR03594 GTPase_EngA ribosome 99.9 1.3E-20 2.8E-25 152.3 14.8 153 12-174 1-162 (429)
183 CHL00189 infB translation init 99.9 3.8E-20 8.3E-25 155.2 17.6 157 8-171 242-409 (742)
184 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 4.1E-21 9E-26 132.9 9.6 171 1-174 1-171 (216)
185 TIGR00437 feoB ferrous iron tr 99.9 1.4E-20 2.9E-25 156.3 14.5 146 17-171 1-154 (591)
186 cd00880 Era_like Era (E. coli 99.9 1.4E-20 3E-25 131.6 12.4 152 15-171 1-163 (163)
187 cd04105 SR_beta Signal recogni 99.9 5.7E-20 1.2E-24 134.1 15.5 118 12-130 2-124 (203)
188 PRK05433 GTP-binding protein L 99.8 6.9E-20 1.5E-24 152.2 17.2 162 8-175 5-187 (600)
189 KOG4423 GTP-binding protein-li 99.8 7.4E-23 1.6E-27 141.1 -0.4 181 4-184 19-206 (229)
190 PRK00093 GTP-binding protein D 99.8 2.2E-20 4.7E-25 151.2 13.8 147 11-171 2-161 (435)
191 PRK05306 infB translation init 99.8 1.1E-19 2.5E-24 153.6 17.8 152 7-170 287-450 (787)
192 KOG0074 GTP-binding ADP-ribosy 99.8 2.8E-20 6E-25 123.0 10.8 159 7-171 14-178 (185)
193 KOG0072 GTP-binding ADP-ribosy 99.8 2.9E-21 6.3E-26 127.9 5.4 163 7-174 15-181 (182)
194 COG1160 Predicted GTPases [Gen 99.8 4.1E-20 9E-25 144.6 12.6 174 11-194 4-192 (444)
195 TIGR00483 EF-1_alpha translati 99.8 5.9E-20 1.3E-24 148.1 13.9 156 5-162 2-197 (426)
196 PRK09518 bifunctional cytidyla 99.8 1.2E-19 2.5E-24 154.3 15.8 154 9-173 274-437 (712)
197 cd01896 DRG The developmentall 99.8 3.2E-19 7E-24 132.7 16.3 154 11-173 1-227 (233)
198 PRK00093 GTP-binding protein D 99.8 1.2E-19 2.5E-24 147.0 14.7 159 8-173 171-345 (435)
199 COG2229 Predicted GTPase [Gene 99.8 5.2E-19 1.1E-23 122.4 15.3 163 3-170 3-176 (187)
200 TIGR03680 eif2g_arch translati 99.8 1.1E-19 2.4E-24 145.4 13.4 165 7-173 1-197 (406)
201 cd01876 YihA_EngB The YihA (En 99.8 3.1E-19 6.8E-24 126.1 13.2 151 12-171 1-170 (170)
202 PRK12317 elongation factor 1-a 99.8 2.5E-19 5.4E-24 144.5 14.2 156 7-164 3-197 (425)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 4.1E-19 8.8E-24 147.2 14.8 161 11-175 2-194 (594)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.2E-19 4.8E-24 131.7 11.2 149 12-163 1-185 (208)
205 COG0486 ThdF Predicted GTPase 99.8 4.7E-19 1E-23 139.1 13.6 155 9-174 216-378 (454)
206 PRK04000 translation initiatio 99.8 5.3E-19 1.1E-23 141.5 13.9 166 6-173 5-202 (411)
207 PRK09518 bifunctional cytidyla 99.8 6.9E-19 1.5E-23 149.6 15.0 157 9-174 449-623 (712)
208 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.8E-18 3.9E-23 125.2 14.9 147 10-160 2-171 (195)
209 COG0370 FeoB Fe2+ transport sy 99.8 1.2E-18 2.6E-23 142.2 15.2 159 9-176 2-168 (653)
210 PRK10218 GTP-binding protein; 99.8 3.1E-18 6.8E-23 141.9 17.5 162 10-175 5-198 (607)
211 PF10662 PduV-EutP: Ethanolami 99.8 9.4E-19 2E-23 118.5 11.5 135 12-168 3-142 (143)
212 TIGR00491 aIF-2 translation in 99.8 2.2E-18 4.8E-23 142.4 15.5 157 9-172 3-216 (590)
213 cd04168 TetM_like Tet(M)-like 99.8 5.7E-18 1.2E-22 126.2 15.8 114 12-129 1-130 (237)
214 KOG1423 Ras-like GTPase ERA [C 99.8 3.6E-18 7.9E-23 127.0 14.3 173 6-184 68-282 (379)
215 PRK10512 selenocysteinyl-tRNA- 99.8 4.8E-18 1E-22 141.5 16.6 158 12-175 2-169 (614)
216 COG1160 Predicted GTPases [Gen 99.8 6.9E-18 1.5E-22 132.2 14.7 160 9-173 177-352 (444)
217 cd04167 Snu114p Snu114p subfam 99.8 4E-18 8.7E-23 125.5 12.6 113 12-128 2-136 (213)
218 PRK12736 elongation factor Tu; 99.8 9.6E-18 2.1E-22 133.8 15.4 164 5-172 7-201 (394)
219 cd01883 EF1_alpha Eukaryotic e 99.8 1.3E-18 2.8E-23 128.6 9.5 148 12-161 1-194 (219)
220 PRK04004 translation initiatio 99.8 1.7E-17 3.7E-22 137.6 16.3 159 6-171 2-217 (586)
221 COG0218 Predicted GTPase [Gene 99.8 1.3E-17 2.8E-22 118.0 13.3 157 9-173 23-198 (200)
222 COG2262 HflX GTPases [General 99.8 2.1E-17 4.6E-22 127.8 15.6 161 8-174 190-358 (411)
223 PRK12735 elongation factor Tu; 99.8 1.9E-17 4.2E-22 132.1 15.6 163 6-172 8-203 (396)
224 COG1163 DRG Predicted GTPase [ 99.8 3.2E-17 7E-22 123.0 15.6 166 7-181 60-298 (365)
225 TIGR00485 EF-Tu translation el 99.8 1.8E-17 4E-22 132.3 15.0 150 5-158 7-179 (394)
226 KOG1707 Predicted Ras related/ 99.8 1E-17 2.2E-22 133.9 11.4 173 5-179 4-182 (625)
227 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.5E-17 7.6E-22 120.5 12.8 165 12-179 1-183 (232)
228 cd04104 p47_IIGP_like p47 (47- 99.7 8.3E-17 1.8E-21 117.1 14.2 158 10-175 1-187 (197)
229 KOG1489 Predicted GTP-binding 99.7 8.4E-17 1.8E-21 120.4 13.4 155 11-170 197-365 (366)
230 COG1084 Predicted GTPase [Gene 99.7 5.7E-17 1.2E-21 122.0 12.6 159 9-173 167-337 (346)
231 CHL00071 tufA elongation facto 99.7 1.4E-16 3.1E-21 127.6 15.6 151 5-159 7-180 (409)
232 PLN00043 elongation factor 1-a 99.7 1.4E-16 3.1E-21 128.5 15.3 153 6-162 3-203 (447)
233 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.6E-16 3.6E-21 117.3 14.2 154 12-169 1-220 (224)
234 PTZ00141 elongation factor 1- 99.7 1.6E-16 3.4E-21 128.3 14.1 155 5-162 2-203 (446)
235 cd01850 CDC_Septin CDC/Septin. 99.7 2.9E-16 6.3E-21 119.5 14.3 144 8-156 2-186 (276)
236 PRK00049 elongation factor Tu; 99.7 3.7E-16 8.1E-21 124.7 15.6 164 5-172 7-203 (396)
237 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.8E-16 6.1E-21 114.2 13.0 170 11-182 1-194 (196)
238 TIGR02034 CysN sulfate adenyly 99.7 1.8E-16 4E-21 126.9 12.7 149 11-162 1-187 (406)
239 PRK00741 prfC peptide chain re 99.7 5.2E-16 1.1E-20 127.3 15.2 118 8-129 8-145 (526)
240 PRK05124 cysN sulfate adenylyl 99.7 2.3E-16 5E-21 128.2 13.0 155 6-163 23-216 (474)
241 PLN03126 Elongation factor Tu; 99.7 6.1E-16 1.3E-20 125.5 15.2 148 7-158 78-248 (478)
242 cd04169 RF3 RF3 subfamily. Pe 99.7 1E-15 2.2E-20 116.0 15.0 115 11-129 3-137 (267)
243 PLN03127 Elongation factor Tu; 99.7 9.1E-16 2E-20 123.8 15.1 162 7-172 58-252 (447)
244 cd01886 EF-G Elongation factor 99.7 3.1E-16 6.8E-21 118.9 11.0 114 12-129 1-130 (270)
245 cd01885 EF2 EF2 (for archaea a 99.7 5.5E-16 1.2E-20 114.1 11.7 113 12-128 2-138 (222)
246 cd04170 EF-G_bact Elongation f 99.7 1.7E-16 3.7E-21 120.7 8.5 157 12-174 1-175 (268)
247 PTZ00327 eukaryotic translatio 99.7 1.2E-15 2.6E-20 123.0 13.2 167 6-174 30-235 (460)
248 PRK05506 bifunctional sulfate 99.7 1.3E-15 2.7E-20 128.4 13.8 153 7-162 21-211 (632)
249 KOG1191 Mitochondrial GTPase [ 99.7 4.2E-16 9.1E-21 122.7 10.0 171 8-179 266-457 (531)
250 COG0532 InfB Translation initi 99.7 1.9E-15 4.1E-20 120.5 13.7 157 9-174 4-172 (509)
251 PF01926 MMR_HSR1: 50S ribosom 99.7 9E-16 2E-20 102.3 10.1 104 12-124 1-116 (116)
252 TIGR00503 prfC peptide chain r 99.7 4.1E-15 8.8E-20 122.1 15.7 118 7-128 8-145 (527)
253 COG3596 Predicted GTPase [Gene 99.6 1.6E-15 3.4E-20 111.8 10.6 164 7-173 36-223 (296)
254 PRK13351 elongation factor G; 99.6 5.4E-15 1.2E-19 125.8 14.9 118 8-129 6-139 (687)
255 cd01899 Ygr210 Ygr210 subfamil 99.6 1.1E-14 2.4E-19 112.5 14.5 158 13-174 1-271 (318)
256 PF09439 SRPRB: Signal recogni 99.6 1.5E-15 3.2E-20 107.4 8.6 116 10-129 3-126 (181)
257 KOG0462 Elongation factor-type 99.6 6.5E-15 1.4E-19 117.3 12.8 166 8-177 58-240 (650)
258 COG0536 Obg Predicted GTPase [ 99.6 5.4E-15 1.2E-19 112.0 11.7 162 12-175 161-336 (369)
259 KOG0077 Vesicle coat complex C 99.6 1.3E-15 2.7E-20 103.7 7.3 157 7-170 17-191 (193)
260 COG5256 TEF1 Translation elong 99.6 6E-15 1.3E-19 114.3 11.1 156 5-162 2-201 (428)
261 PRK09866 hypothetical protein; 99.6 6E-14 1.3E-18 114.9 17.0 110 59-170 230-351 (741)
262 PRK09602 translation-associate 99.6 4.7E-14 1E-18 112.1 15.2 69 115-189 217-286 (396)
263 PRK12739 elongation factor G; 99.6 6.7E-14 1.5E-18 119.0 15.1 118 8-129 6-139 (691)
264 COG5257 GCD11 Translation init 99.6 2.1E-14 4.6E-19 107.8 10.4 191 2-195 2-225 (415)
265 KOG1145 Mitochondrial translat 99.6 1.1E-13 2.3E-18 110.6 14.6 157 8-174 151-318 (683)
266 COG0481 LepA Membrane GTPase L 99.6 2E-13 4.4E-18 107.4 15.7 164 9-179 8-193 (603)
267 KOG1486 GTP-binding protein DR 99.6 1.5E-13 3.3E-18 100.1 13.6 159 8-175 60-291 (364)
268 KOG0090 Signal recognition par 99.6 5.6E-14 1.2E-18 99.8 10.9 156 10-171 38-238 (238)
269 TIGR00484 EF-G translation elo 99.6 7.4E-14 1.6E-18 118.8 13.7 144 8-157 8-171 (689)
270 KOG1490 GTP-binding protein CR 99.5 1.8E-14 3.9E-19 113.8 7.9 166 8-176 166-345 (620)
271 PF04548 AIG1: AIG1 family; I 99.5 4.1E-14 8.8E-19 104.0 9.3 168 11-182 1-196 (212)
272 PRK00007 elongation factor G; 99.5 9E-13 2E-17 112.2 16.3 117 8-128 8-140 (693)
273 TIGR00991 3a0901s02IAP34 GTP-b 99.5 6.2E-13 1.3E-17 101.3 12.9 127 7-135 35-173 (313)
274 COG4917 EutP Ethanolamine util 99.5 1E-13 2.3E-18 90.2 7.4 136 12-169 3-143 (148)
275 PRK12740 elongation factor G; 99.5 7.1E-13 1.5E-17 112.7 14.1 110 16-129 1-126 (668)
276 KOG3905 Dynein light intermedi 99.5 1.7E-12 3.7E-17 97.9 13.7 164 7-173 49-291 (473)
277 PRK13768 GTPase; Provisional 99.5 4.5E-13 9.7E-18 100.9 10.6 110 60-172 98-247 (253)
278 TIGR00101 ureG urease accessor 99.5 1.3E-12 2.8E-17 94.9 12.5 103 59-172 92-196 (199)
279 cd01853 Toc34_like Toc34-like 99.5 1.1E-12 2.3E-17 98.4 12.4 123 6-130 27-164 (249)
280 COG4108 PrfC Peptide chain rel 99.5 1.6E-12 3.4E-17 101.6 12.4 174 8-185 10-289 (528)
281 COG2895 CysN GTPases - Sulfate 99.5 1.5E-12 3.4E-17 99.1 11.8 151 7-162 3-193 (431)
282 TIGR00490 aEF-2 translation el 99.4 4.6E-13 9.9E-18 114.3 9.9 119 7-129 16-152 (720)
283 smart00010 small_GTPase Small 99.4 2.6E-12 5.6E-17 86.3 11.0 114 11-161 1-115 (124)
284 TIGR00157 ribosome small subun 99.4 6.7E-13 1.5E-17 99.5 8.5 99 70-172 24-123 (245)
285 PRK14845 translation initiatio 99.4 4.4E-12 9.6E-17 110.4 14.4 105 61-172 528-673 (1049)
286 KOG1532 GTPase XAB1, interacts 99.4 1.3E-12 2.9E-17 96.4 9.3 174 5-180 14-272 (366)
287 cd00066 G-alpha G protein alph 99.4 6.9E-12 1.5E-16 97.4 13.2 118 57-174 159-313 (317)
288 PF05783 DLIC: Dynein light in 99.4 8.9E-12 1.9E-16 100.7 13.9 166 6-174 21-266 (472)
289 COG1217 TypA Predicted membran 99.4 1E-11 2.2E-16 97.7 13.0 163 10-176 5-199 (603)
290 PTZ00258 GTP-binding protein; 99.4 9.9E-12 2.1E-16 98.1 12.9 86 6-93 17-126 (390)
291 PRK09435 membrane ATPase/prote 99.4 5.4E-12 1.2E-16 97.8 11.2 106 58-174 148-262 (332)
292 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.3E-11 2.7E-16 91.6 12.4 140 7-158 36-182 (225)
293 KOG1707 Predicted Ras related/ 99.4 2.3E-11 5E-16 98.0 14.2 163 8-175 423-586 (625)
294 TIGR02836 spore_IV_A stage IV 99.4 1.5E-11 3.2E-16 96.4 12.7 160 8-172 15-237 (492)
295 TIGR00073 hypB hydrogenase acc 99.4 1E-11 2.3E-16 91.0 11.1 149 9-170 21-205 (207)
296 PF03029 ATP_bind_1: Conserved 99.4 3.8E-13 8.3E-18 100.1 3.5 112 60-171 92-236 (238)
297 PRK07560 elongation factor EF- 99.4 2.6E-11 5.6E-16 103.9 14.5 117 8-128 18-152 (731)
298 PF05049 IIGP: Interferon-indu 99.4 8.5E-12 1.8E-16 97.5 10.4 159 8-174 33-220 (376)
299 KOG0461 Selenocysteine-specifi 99.3 6.5E-11 1.4E-15 90.2 14.0 167 8-179 5-200 (522)
300 PF00350 Dynamin_N: Dynamin fa 99.3 2.4E-11 5.1E-16 86.1 11.1 62 61-125 103-168 (168)
301 smart00275 G_alpha G protein a 99.3 3.9E-11 8.5E-16 94.0 12.7 118 57-174 182-336 (342)
302 KOG0705 GTPase-activating prot 99.3 5.2E-12 1.1E-16 101.0 7.8 184 5-195 25-212 (749)
303 COG0378 HypB Ni2+-binding GTPa 99.3 5.1E-11 1.1E-15 84.1 11.8 152 7-171 9-200 (202)
304 KOG0410 Predicted GTP binding 99.3 3.1E-12 6.7E-17 96.5 5.4 152 10-173 178-342 (410)
305 PTZ00416 elongation factor 2; 99.3 1.3E-11 2.9E-16 106.8 9.9 117 8-128 17-157 (836)
306 PLN00116 translation elongatio 99.3 1.4E-11 3E-16 106.9 9.8 119 6-128 15-163 (843)
307 PF00735 Septin: Septin; Inte 99.3 4.1E-11 8.9E-16 91.3 11.1 142 9-154 3-183 (281)
308 PRK09601 GTP-binding protein Y 99.3 2.1E-10 4.5E-15 89.8 14.7 81 11-93 3-107 (364)
309 KOG1487 GTP-binding protein DR 99.3 2E-11 4.4E-16 89.5 8.4 162 10-181 59-290 (358)
310 KOG0458 Elongation factor 1 al 99.3 7.6E-11 1.7E-15 95.1 12.2 154 8-163 175-373 (603)
311 TIGR00750 lao LAO/AO transport 99.2 9.6E-11 2.1E-15 90.5 10.6 104 58-172 126-238 (300)
312 KOG1144 Translation initiation 99.2 4.4E-11 9.5E-16 98.7 8.5 162 9-174 474-689 (1064)
313 cd01900 YchF YchF subfamily. 99.2 3.5E-10 7.5E-15 85.7 11.8 81 13-93 1-103 (274)
314 KOG3886 GTP-binding protein [S 99.2 5.7E-11 1.2E-15 85.7 7.2 147 9-157 3-164 (295)
315 smart00053 DYNc Dynamin, GTPas 99.2 4.5E-10 9.8E-15 83.5 11.1 69 59-130 125-207 (240)
316 COG0480 FusA Translation elong 99.1 4.6E-10 1E-14 94.6 10.8 123 3-129 3-142 (697)
317 TIGR00993 3a0901s04IAP86 chlor 99.1 1.3E-09 2.8E-14 90.2 12.1 120 8-129 116-250 (763)
318 COG5019 CDC3 Septin family pro 99.1 2E-09 4.3E-14 83.0 12.1 140 7-151 20-200 (373)
319 KOG0468 U5 snRNP-specific prot 99.1 8.1E-10 1.7E-14 90.6 9.7 120 5-128 123-262 (971)
320 COG3276 SelB Selenocysteine-sp 99.1 2.2E-09 4.7E-14 84.5 11.7 157 12-172 2-162 (447)
321 PRK10463 hydrogenase nickel in 99.1 5.7E-10 1.2E-14 84.6 8.0 55 116-170 231-287 (290)
322 KOG2655 Septin family protein 99.1 4.2E-09 9.1E-14 81.7 12.7 146 6-156 17-201 (366)
323 KOG0082 G-protein alpha subuni 99.1 4.3E-09 9.4E-14 81.5 12.8 120 55-174 191-346 (354)
324 COG1703 ArgK Putative periplas 99.1 1.2E-09 2.6E-14 82.1 8.9 159 6-176 47-258 (323)
325 KOG3887 Predicted small GTPase 99.0 2.5E-09 5.4E-14 77.9 9.0 163 11-177 28-207 (347)
326 COG0050 TufB GTPases - transla 99.0 2.3E-09 5E-14 80.2 9.0 166 5-174 7-203 (394)
327 PF03308 ArgK: ArgK protein; 99.0 2.8E-10 6.1E-15 84.2 4.0 154 8-173 27-231 (266)
328 KOG1954 Endocytosis/signaling 99.0 1.6E-09 3.5E-14 83.4 8.2 117 11-130 59-226 (532)
329 KOG1547 Septin CDC10 and relat 99.0 1.7E-08 3.7E-13 73.6 11.1 156 6-166 42-237 (336)
330 cd01855 YqeH YqeH. YqeH is an 98.9 5.3E-09 1.1E-13 75.6 8.2 94 72-172 24-125 (190)
331 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 2.7E-09 5.8E-14 73.5 6.3 54 12-69 85-138 (141)
332 cd01858 NGP_1 NGP-1. Autoanti 98.9 3.9E-09 8.5E-14 74.0 7.1 57 9-69 101-157 (157)
333 PRK12289 GTPase RsgA; Reviewed 98.9 5.4E-09 1.2E-13 82.1 8.4 94 73-171 80-174 (352)
334 cd04178 Nucleostemin_like Nucl 98.9 3.9E-09 8.5E-14 74.9 6.8 58 8-69 115-172 (172)
335 cd01859 MJ1464 MJ1464. This f 98.9 3.8E-09 8.2E-14 73.9 6.2 94 73-172 3-96 (156)
336 cd01854 YjeQ_engC YjeQ/EngC. 98.9 6.8E-09 1.5E-13 79.7 8.0 89 77-170 73-162 (287)
337 PRK12288 GTPase RsgA; Reviewed 98.9 1.2E-08 2.6E-13 80.1 9.0 90 80-172 118-208 (347)
338 COG0012 Predicted GTPase, prob 98.9 6E-08 1.3E-12 75.3 12.4 84 10-93 2-108 (372)
339 KOG0466 Translation initiation 98.9 2.5E-09 5.4E-14 80.5 4.4 188 6-195 34-264 (466)
340 PRK00098 GTPase RsgA; Reviewed 98.9 1.1E-08 2.3E-13 79.1 7.6 89 79-171 77-166 (298)
341 cd01855 YqeH YqeH. YqeH is an 98.8 9E-09 1.9E-13 74.4 6.1 57 10-69 127-190 (190)
342 COG1161 Predicted GTPases [Gen 98.8 1.2E-08 2.6E-13 79.5 6.6 60 7-70 129-188 (322)
343 cd01859 MJ1464 MJ1464. This f 98.8 2.4E-08 5.2E-13 69.9 7.2 57 8-68 99-155 (156)
344 cd01856 YlqF YlqF. Proteins o 98.8 2.4E-08 5.2E-13 71.0 6.9 57 9-69 114-170 (171)
345 TIGR03596 GTPase_YlqF ribosome 98.8 3.2E-08 7E-13 75.6 7.4 58 8-69 116-173 (276)
346 PRK09563 rbgA GTPase YlqF; Rev 98.8 4.3E-08 9.3E-13 75.4 8.0 59 8-70 119-177 (287)
347 KOG1143 Predicted translation 98.7 6.9E-08 1.5E-12 74.7 8.8 157 6-166 163-382 (591)
348 TIGR03597 GTPase_YqeH ribosome 98.7 8.2E-08 1.8E-12 76.1 8.3 95 69-170 50-151 (360)
349 cd01849 YlqF_related_GTPase Yl 98.7 5.4E-08 1.2E-12 68.1 6.3 58 8-69 98-155 (155)
350 KOG2486 Predicted GTPase [Gene 98.7 5.8E-08 1.3E-12 72.3 6.5 155 8-170 134-314 (320)
351 COG1618 Predicted nucleotide k 98.7 1.3E-06 2.9E-11 60.1 12.5 147 9-173 4-177 (179)
352 cd01858 NGP_1 NGP-1. Autoanti 98.7 7.7E-08 1.7E-12 67.4 6.6 91 79-172 5-95 (157)
353 COG5258 GTPBP1 GTPase [General 98.6 5.1E-07 1.1E-11 70.3 10.8 163 7-174 114-340 (527)
354 KOG0460 Mitochondrial translat 98.6 4.2E-07 9E-12 69.7 8.9 150 5-157 49-223 (449)
355 KOG0448 Mitofusin 1 GTPase, in 98.5 2.6E-06 5.7E-11 70.7 13.1 144 9-156 108-310 (749)
356 COG5192 BMS1 GTP-binding prote 98.5 1.2E-06 2.6E-11 71.4 10.9 139 7-156 66-210 (1077)
357 cd01849 YlqF_related_GTPase Yl 98.5 3.7E-07 8E-12 63.8 7.2 84 84-171 1-84 (155)
358 cd01851 GBP Guanylate-binding 98.5 8.1E-07 1.8E-11 65.9 9.2 86 8-94 5-103 (224)
359 KOG0463 GTP-binding protein GP 98.5 5.5E-07 1.2E-11 70.0 8.0 162 6-172 129-357 (641)
360 PRK12288 GTPase RsgA; Reviewed 98.5 3E-07 6.5E-12 72.3 6.2 59 12-73 207-271 (347)
361 PRK10416 signal recognition pa 98.5 1.5E-06 3.3E-11 67.6 10.0 143 9-163 113-301 (318)
362 PRK12289 GTPase RsgA; Reviewed 98.5 3E-07 6.5E-12 72.4 6.0 56 12-71 174-236 (352)
363 PF03193 DUF258: Protein of un 98.5 2.1E-07 4.5E-12 64.9 4.1 60 11-73 36-101 (161)
364 cd01856 YlqF YlqF. Proteins o 98.5 4.6E-07 1E-11 64.4 6.0 89 75-171 12-100 (171)
365 PF09547 Spore_IV_A: Stage IV 98.4 1.8E-05 3.8E-10 62.9 14.9 159 8-171 15-236 (492)
366 TIGR00092 GTP-binding protein 98.4 1.1E-06 2.5E-11 69.1 8.3 83 11-93 3-108 (368)
367 KOG0447 Dynamin-like GTP bindi 98.4 6.9E-06 1.5E-10 66.9 12.4 95 60-157 413-526 (980)
368 PRK13796 GTPase YqeH; Provisio 98.4 5E-07 1.1E-11 71.8 5.9 58 10-70 160-221 (365)
369 TIGR03597 GTPase_YqeH ribosome 98.4 7.4E-07 1.6E-11 70.7 6.7 58 11-71 155-216 (360)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 9.3E-07 2E-11 60.8 6.4 75 78-158 7-83 (141)
371 KOG4273 Uncharacterized conser 98.4 6.5E-06 1.4E-10 60.8 10.9 157 10-170 4-220 (418)
372 KOG1491 Predicted GTP-binding 98.4 6.3E-07 1.4E-11 68.6 5.9 90 4-93 14-125 (391)
373 TIGR00064 ftsY signal recognit 98.4 2.9E-06 6.2E-11 64.7 9.3 95 57-164 153-260 (272)
374 TIGR03596 GTPase_YlqF ribosome 98.4 8.8E-07 1.9E-11 67.8 6.3 100 67-174 5-105 (276)
375 TIGR00157 ribosome small subun 98.4 8.5E-07 1.8E-11 66.6 5.9 58 11-72 121-184 (245)
376 PRK14974 cell division protein 98.4 1.9E-06 4.1E-11 67.4 7.7 94 59-164 223-322 (336)
377 PRK01889 GTPase RsgA; Reviewed 98.3 2.6E-06 5.7E-11 67.4 7.6 84 79-168 109-193 (356)
378 KOG0467 Translation elongation 98.3 3.2E-06 6.8E-11 70.9 8.1 116 8-127 7-136 (887)
379 TIGR01425 SRP54_euk signal rec 98.3 9.2E-06 2E-10 65.4 10.3 134 9-152 99-272 (429)
380 PRK13695 putative NTPase; Prov 98.3 4.4E-05 9.5E-10 54.4 12.6 49 113-171 124-172 (174)
381 cd03112 CobW_like The function 98.3 5.4E-06 1.2E-10 58.1 7.6 64 58-127 86-158 (158)
382 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.7E-06 3.7E-11 66.6 5.4 101 66-174 7-108 (287)
383 PRK13796 GTPase YqeH; Provisio 98.3 6.6E-06 1.4E-10 65.4 8.8 94 71-171 58-158 (365)
384 PRK00098 GTPase RsgA; Reviewed 98.2 2.5E-06 5.5E-11 66.0 6.1 57 11-71 165-228 (298)
385 TIGR03348 VI_IcmF type VI secr 98.2 5.5E-06 1.2E-10 74.9 8.8 112 13-128 114-256 (1169)
386 COG1126 GlnQ ABC-type polar am 98.2 6.4E-07 1.4E-11 64.7 2.4 40 134-173 144-185 (240)
387 PF03266 NTPase_1: NTPase; In 98.2 1.8E-05 3.8E-10 56.0 9.7 135 12-160 1-163 (168)
388 KOG0465 Mitochondrial elongati 98.2 3.9E-06 8.5E-11 68.8 6.4 116 9-128 38-169 (721)
389 KOG0464 Elongation factor G [T 98.2 5E-07 1.1E-11 71.0 1.0 117 9-129 36-168 (753)
390 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.5E-06 9.8E-11 64.2 6.3 60 11-73 162-227 (287)
391 KOG1424 Predicted GTP-binding 98.2 3.3E-06 7.1E-11 68.0 5.3 56 10-69 314-369 (562)
392 cd03110 Fer4_NifH_child This p 98.1 0.00016 3.5E-09 51.6 12.8 86 57-151 91-176 (179)
393 PRK14722 flhF flagellar biosyn 98.1 2.9E-05 6.3E-10 61.5 9.6 141 9-153 136-315 (374)
394 PF00448 SRP54: SRP54-type pro 98.1 1.2E-05 2.6E-10 58.3 6.6 132 11-153 2-174 (196)
395 COG1162 Predicted GTPases [Gen 98.1 6.7E-06 1.4E-10 62.6 5.3 59 12-73 166-230 (301)
396 cd03115 SRP The signal recogni 98.1 3E-05 6.6E-10 55.1 8.4 83 58-150 82-170 (173)
397 PF00503 G-alpha: G-protein al 98.0 2.5E-05 5.4E-10 62.8 8.2 114 57-170 234-388 (389)
398 COG0523 Putative GTPases (G3E 98.0 0.00014 3.1E-09 56.6 11.8 90 59-156 85-186 (323)
399 cd03114 ArgK-like The function 98.0 4.8E-05 1E-09 52.7 8.3 58 58-126 91-148 (148)
400 COG1162 Predicted GTPases [Gen 98.0 4E-05 8.6E-10 58.5 8.4 100 74-176 71-171 (301)
401 PRK12727 flagellar biosynthesi 98.0 0.00024 5.2E-09 58.6 12.7 135 9-153 349-518 (559)
402 PRK11889 flhF flagellar biosyn 98.0 3.6E-05 7.8E-10 61.1 7.7 134 10-153 241-411 (436)
403 COG3640 CooC CO dehydrogenase 97.9 0.00013 2.8E-09 53.6 9.0 74 61-147 136-211 (255)
404 PF06858 NOG1: Nucleolar GTP-b 97.9 5.2E-05 1.1E-09 42.9 5.5 47 79-126 10-58 (58)
405 PRK14721 flhF flagellar biosyn 97.9 7.2E-05 1.6E-09 60.2 8.4 134 9-153 190-360 (420)
406 COG3523 IcmF Type VI protein s 97.9 2.7E-05 5.8E-10 69.4 6.3 115 13-129 128-270 (1188)
407 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.0002 4.3E-09 45.3 8.9 69 13-95 2-71 (99)
408 KOG2485 Conserved ATP/GTP bind 97.9 1.9E-05 4.1E-10 60.1 4.3 62 7-69 140-206 (335)
409 KOG2484 GTPase [General functi 97.9 1.2E-05 2.7E-10 62.9 3.3 58 8-69 250-307 (435)
410 cd02038 FleN-like FleN is a me 97.9 8.3E-05 1.8E-09 51.0 7.0 106 14-127 4-109 (139)
411 COG1419 FlhF Flagellar GTP-bin 97.9 0.00024 5.3E-09 56.4 10.4 155 10-174 203-396 (407)
412 KOG0459 Polypeptide release fa 97.9 3.7E-05 8.1E-10 60.4 5.8 157 6-165 75-279 (501)
413 cd02042 ParA ParA and ParB of 97.8 0.00014 3E-09 47.1 7.5 82 13-106 2-84 (104)
414 KOG0085 G protein subunit Galp 97.8 3.3E-05 7.2E-10 56.5 4.7 117 58-174 198-351 (359)
415 KOG1534 Putative transcription 97.8 1.9E-05 4.1E-10 56.9 3.2 111 60-172 99-251 (273)
416 PRK00771 signal recognition pa 97.8 0.00052 1.1E-08 55.8 11.8 136 8-153 93-266 (437)
417 KOG3859 Septins (P-loop GTPase 97.8 0.00017 3.7E-09 54.2 8.3 62 7-68 39-104 (406)
418 PRK12724 flagellar biosynthesi 97.8 5.6E-05 1.2E-09 60.6 5.9 143 10-162 223-404 (432)
419 cd03111 CpaE_like This protein 97.8 0.00024 5.3E-09 46.3 7.9 103 13-124 2-106 (106)
420 PRK14723 flhF flagellar biosyn 97.8 0.0005 1.1E-08 59.2 11.7 135 11-153 186-357 (767)
421 PRK05703 flhF flagellar biosyn 97.8 0.00014 3E-09 59.0 8.0 87 58-154 299-392 (424)
422 PRK10867 signal recognition pa 97.8 0.00013 2.8E-09 59.1 7.8 86 58-153 183-274 (433)
423 TIGR00959 ffh signal recogniti 97.8 0.00023 4.9E-09 57.7 8.9 87 58-154 182-274 (428)
424 PF13555 AAA_29: P-loop contai 97.7 3.8E-05 8.3E-10 44.6 3.1 21 12-32 25-45 (62)
425 PRK06995 flhF flagellar biosyn 97.7 0.002 4.2E-08 53.0 14.1 133 11-153 257-425 (484)
426 PRK12726 flagellar biosynthesi 97.7 0.00048 1E-08 54.7 9.7 136 9-154 205-377 (407)
427 cd00009 AAA The AAA+ (ATPases 97.6 0.00056 1.2E-08 46.4 8.5 24 10-33 19-42 (151)
428 PRK11537 putative GTP-binding 97.6 0.0014 3.1E-08 51.2 11.6 95 59-164 91-196 (318)
429 PF13207 AAA_17: AAA domain; P 97.6 4.7E-05 1E-09 50.7 2.9 21 12-32 1-21 (121)
430 PRK08118 topology modulation p 97.6 5.3E-05 1.2E-09 53.6 3.1 21 12-32 3-23 (167)
431 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00093 2E-08 47.7 9.4 22 11-32 26-47 (177)
432 PF11111 CENP-M: Centromere pr 97.6 0.0042 9.1E-08 43.7 12.2 144 9-176 14-157 (176)
433 PRK12723 flagellar biosynthesi 97.6 0.0018 3.9E-08 51.9 11.7 134 10-153 174-346 (388)
434 PRK07261 topology modulation p 97.6 6.4E-05 1.4E-09 53.4 3.1 22 11-32 1-22 (171)
435 PRK14737 gmk guanylate kinase; 97.6 6.5E-05 1.4E-09 54.1 3.1 24 10-33 4-27 (186)
436 COG0563 Adk Adenylate kinase a 97.6 7.2E-05 1.6E-09 53.4 3.2 23 11-33 1-23 (178)
437 PF13671 AAA_33: AAA domain; P 97.5 7.3E-05 1.6E-09 51.2 2.9 19 13-31 2-20 (143)
438 KOG2423 Nucleolar GTPase [Gene 97.5 2.7E-05 6E-10 61.1 0.4 86 5-97 302-389 (572)
439 KOG0780 Signal recognition par 97.5 0.00058 1.3E-08 53.8 7.6 102 6-107 97-238 (483)
440 PRK06731 flhF flagellar biosyn 97.5 0.00074 1.6E-08 51.4 8.1 134 10-153 75-245 (270)
441 KOG0099 G protein subunit Galp 97.5 0.0002 4.4E-09 53.4 4.8 124 54-177 197-374 (379)
442 COG1136 SalX ABC-type antimicr 97.5 9.5E-05 2.1E-09 54.4 3.0 21 12-32 33-53 (226)
443 COG1116 TauB ABC-type nitrate/ 97.5 0.0001 2.2E-09 54.7 3.0 20 13-32 32-51 (248)
444 cd00071 GMPK Guanosine monopho 97.5 0.00015 3.3E-09 49.5 3.6 20 13-32 2-21 (137)
445 cd02036 MinD Bacterial cell di 97.5 0.0049 1.1E-07 43.7 11.6 84 60-150 64-147 (179)
446 PF00005 ABC_tran: ABC transpo 97.4 0.00011 2.3E-09 50.0 2.8 22 12-33 13-34 (137)
447 COG0194 Gmk Guanylate kinase [ 97.4 9.3E-05 2E-09 52.5 2.5 24 11-34 5-28 (191)
448 PF03215 Rad17: Rad17 cell cyc 97.4 0.002 4.4E-08 53.6 10.4 21 13-33 48-68 (519)
449 KOG0469 Elongation factor 2 [T 97.4 0.0003 6.5E-09 57.1 5.3 136 4-143 13-179 (842)
450 KOG1970 Checkpoint RAD17-RFC c 97.4 0.0014 3.1E-08 53.8 9.1 88 85-174 196-286 (634)
451 cd02019 NK Nucleoside/nucleoti 97.4 0.00017 3.7E-09 43.1 3.0 20 13-32 2-21 (69)
452 PF13521 AAA_28: AAA domain; P 97.4 9.6E-05 2.1E-09 52.0 2.2 22 12-33 1-22 (163)
453 PRK05480 uridine/cytidine kina 97.4 0.00022 4.7E-09 52.3 4.0 26 7-32 3-28 (209)
454 PRK14738 gmk guanylate kinase; 97.4 0.00021 4.5E-09 52.3 3.7 26 7-32 10-35 (206)
455 COG4598 HisP ABC-type histidin 97.4 0.00034 7.4E-09 49.6 4.4 39 135-173 161-201 (256)
456 cd03238 ABC_UvrA The excision 97.3 0.00021 4.5E-09 51.0 3.3 22 10-31 21-42 (176)
457 cd01131 PilT Pilus retraction 97.3 0.0012 2.6E-08 48.0 7.2 22 12-33 3-24 (198)
458 PRK10751 molybdopterin-guanine 97.3 0.00028 6E-09 50.0 3.7 24 9-32 5-28 (173)
459 COG1120 FepC ABC-type cobalami 97.3 0.0002 4.3E-09 53.8 3.0 20 13-32 31-50 (258)
460 PRK01889 GTPase RsgA; Reviewed 97.3 0.00033 7.1E-09 55.6 4.5 24 11-34 196-219 (356)
461 TIGR03263 guanyl_kin guanylate 97.3 0.00031 6.7E-09 50.2 4.0 21 12-32 3-23 (180)
462 PRK06217 hypothetical protein; 97.3 0.00023 5E-09 51.1 3.2 22 11-32 2-23 (183)
463 PF03205 MobB: Molybdopterin g 97.3 0.00025 5.5E-09 48.6 3.1 21 12-32 2-22 (140)
464 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00025 5.4E-09 46.1 2.9 21 11-31 16-36 (107)
465 COG1117 PstB ABC-type phosphat 97.3 0.00023 5E-09 51.7 3.0 21 11-31 34-54 (253)
466 COG3845 ABC-type uncharacteriz 97.3 0.0022 4.7E-08 52.1 8.7 52 74-126 150-201 (501)
467 PF04665 Pox_A32: Poxvirus A32 97.3 0.00027 5.8E-09 52.7 3.4 25 8-32 11-35 (241)
468 PRK10078 ribose 1,5-bisphospho 97.3 0.00024 5.3E-09 51.1 3.1 22 12-33 4-25 (186)
469 PF05621 TniB: Bacterial TniB 97.3 0.0016 3.5E-08 50.0 7.6 109 4-126 55-191 (302)
470 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.00024 5.2E-09 53.2 3.0 21 12-32 32-52 (254)
471 smart00382 AAA ATPases associa 97.3 0.00029 6.3E-09 47.4 3.3 24 11-34 3-26 (148)
472 TIGR02322 phosphon_PhnN phosph 97.3 0.00027 5.9E-09 50.4 3.2 22 12-33 3-24 (179)
473 PRK13851 type IV secretion sys 97.3 0.0019 4.1E-08 51.0 8.1 24 9-32 161-184 (344)
474 KOG1533 Predicted GTPase [Gene 97.2 0.00029 6.2E-09 51.8 3.2 20 11-30 3-22 (290)
475 COG3638 ABC-type phosphate/pho 97.2 0.00026 5.6E-09 52.1 3.0 21 12-32 32-52 (258)
476 TIGR00235 udk uridine kinase. 97.2 0.00039 8.4E-09 50.9 4.0 24 9-32 5-28 (207)
477 PF00004 AAA: ATPase family as 97.2 0.00031 6.8E-09 47.2 3.2 20 13-32 1-20 (132)
478 PF13238 AAA_18: AAA domain; P 97.2 0.00026 5.6E-09 47.4 2.7 21 13-33 1-21 (129)
479 PRK03839 putative kinase; Prov 97.2 0.00029 6.2E-09 50.4 3.1 21 12-32 2-22 (180)
480 cd01130 VirB11-like_ATPase Typ 97.2 0.00032 7E-09 50.5 3.3 23 10-32 25-47 (186)
481 COG3840 ThiQ ABC-type thiamine 97.2 0.00032 6.9E-09 49.8 3.1 22 11-32 26-47 (231)
482 COG3839 MalK ABC-type sugar tr 97.2 0.00027 5.9E-09 55.2 3.0 21 13-33 32-52 (338)
483 KOG0066 eIF2-interacting prote 97.2 0.0024 5.2E-08 51.5 8.3 23 10-32 613-635 (807)
484 PRK05541 adenylylsulfate kinas 97.2 0.00044 9.6E-09 49.2 3.9 27 6-32 3-29 (176)
485 cd02023 UMPK Uridine monophosp 97.2 0.00031 6.8E-09 51.0 3.2 20 13-32 2-21 (198)
486 PTZ00088 adenylate kinase 1; P 97.2 0.00038 8.3E-09 51.8 3.6 25 8-32 4-28 (229)
487 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00032 7E-09 51.7 3.2 22 12-33 32-53 (218)
488 PRK14530 adenylate kinase; Pro 97.2 0.00035 7.5E-09 51.5 3.3 22 11-32 4-25 (215)
489 PRK13833 conjugal transfer pro 97.2 0.0019 4.2E-08 50.4 7.5 23 10-32 144-166 (323)
490 TIGR01166 cbiO cobalt transpor 97.2 0.00033 7.2E-09 50.5 3.0 21 12-32 20-40 (190)
491 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00035 7.7E-09 51.0 3.2 22 12-33 28-49 (205)
492 cd03264 ABC_drug_resistance_li 97.2 0.00033 7.2E-09 51.4 3.0 21 12-32 27-47 (211)
493 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00034 7.3E-09 51.3 3.1 22 12-33 29-50 (211)
494 TIGR00960 3a0501s02 Type II (G 97.2 0.00037 8E-09 51.3 3.2 21 12-32 31-51 (216)
495 cd03261 ABC_Org_Solvent_Resist 97.2 0.00037 8.1E-09 52.0 3.2 22 12-33 28-49 (235)
496 TIGR00150 HI0065_YjeE ATPase, 97.2 0.002 4.3E-08 43.6 6.4 24 10-33 22-45 (133)
497 cd03292 ABC_FtsE_transporter F 97.2 0.0004 8.6E-09 51.1 3.2 22 12-33 29-50 (214)
498 PRK13949 shikimate kinase; Pro 97.1 0.00046 9.9E-09 48.9 3.4 21 12-32 3-23 (169)
499 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00039 8.5E-09 49.9 3.1 21 11-31 4-24 (188)
500 cd03259 ABC_Carb_Solutes_like 97.1 0.00041 8.9E-09 51.0 3.2 21 12-32 28-48 (213)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-43 Score=241.59 Aligned_cols=176 Identities=44% Similarity=0.707 Sum_probs=168.0
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+.+||+|+|.+|+|||.|+.++.++.+...+..++|+++....+.+++...++++|||+||++++....+|+++||
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDI 163 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~ 163 (200)
++|+|||+++.+||+.+..|+.++.++...++|.++|+||+|+.+.+.++.++++.++..++++ ++++||+++.|++++
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 9999999999999999999999999998889999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhccccCCCCCC
Q 029029 164 FYEIAKRLPRVQPAPNP 180 (200)
Q Consensus 164 ~~~l~~~~~~~~~~~~~ 180 (200)
|..|...+..+.+....
T Consensus 164 F~~la~~lk~~~~~~~~ 180 (205)
T KOG0084|consen 164 FLTLAKELKQRKGLHVK 180 (205)
T ss_pred HHHHHHHHHHhcccCCC
Confidence 99999999887665543
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-42 Score=236.31 Aligned_cols=193 Identities=62% Similarity=0.977 Sum_probs=177.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+++|..++|||||+.++..+.+.+...+++|..+....+.++...++|.+|||+|+++|..+.++|+++|+++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 45689999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|||+++.+||..+..|++++.+...+++-+.+++||+||.+.+++..+++..+++..+..++++||+++.|++++|..
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 99999999999999999999999987788889999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCC------CCceeccCCCCCCCCCCCCC
Q 029029 167 IAKRLPRVQPAPNP------SGMVLMDRPGERTASASCCS 200 (200)
Q Consensus 167 l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~c~~ 200 (200)
|.+++........+ .++. +........+++|||
T Consensus 162 Ia~~lp~~~~~~~~~~~~~~~g~~-l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 162 IAEKLPCSDPQERQGLPNRRQGVD-LNSNQEPARPSGCCA 200 (200)
T ss_pred HHHhccCcccccccccccccccee-cccCCCCcCcCCcCC
Confidence 99999998877664 3444 333336777888986
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-41 Score=231.92 Aligned_cols=199 Identities=41% Similarity=0.674 Sum_probs=176.1
Q ss_pred CCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q 029029 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR 81 (200)
Q Consensus 2 ~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 81 (200)
.+.+...+..|++++|..++||||||+++..+.+...+.+++|+++...++.+.+..+.+++|||+||++++.+.+.|++
T Consensus 14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~R 93 (221)
T KOG0094|consen 14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 93 (221)
T ss_pred cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhcc
Confidence 44566677799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
++.++|+|||+++..+|+...+|++.+...+.. ++.+++|+||.||.+.+++..++....+++++..|+++||+.|.||
T Consensus 94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 94 DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 999999999999999999999999999998765 5889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCC---C---CCCceeccCCCCCCCCC--CCCC
Q 029029 161 NDIFYEIAKRLPRVQPAP---N---PSGMVLMDRPGERTASA--SCCS 200 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~--~c~~ 200 (200)
+.+|..+...+..+.... . +..+.+...|++..+++ .|||
T Consensus 174 k~lFrrIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~~~~~~C 221 (221)
T KOG0094|consen 174 KQLFRRIAAALPGMEVLEILSKQESMVDINLKGSPNEQQASKPGLCSC 221 (221)
T ss_pred HHHHHHHHHhccCccccccccccccceeEEccCCCCcccccCCCCCCC
Confidence 999999999988874322 1 22333333455555554 5887
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-38 Score=222.58 Aligned_cols=172 Identities=40% Similarity=0.698 Sum_probs=164.6
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
....-+||+++|.++||||+++.++..+.+...+..++|+++...++..++..+.+++|||+|+++++.....|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+++|||+++..+|+++..|++.+..+...++|.++|+||+|+...++++.+..++++..+|++|+|+||++|.||++.|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCC
Q 029029 166 EIAKRLPRVQPA 177 (200)
Q Consensus 166 ~l~~~~~~~~~~ 177 (200)
.|++.+....+.
T Consensus 168 ~La~~i~~k~~~ 179 (207)
T KOG0078|consen 168 SLARDILQKLED 179 (207)
T ss_pred HHHHHHHhhcch
Confidence 999999865444
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.4e-38 Score=210.33 Aligned_cols=170 Identities=39% Similarity=0.705 Sum_probs=159.8
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.....+||+++|.+|+|||||+-++..+.+.+....++|+++..+.+.+++..+++.+|||+|+++++.+.+.|+++|.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 33557999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
+|+|||++.+++|..+..|++++..+. .+++..++|+||+|....+.++-++..++++++++.|+++||++..+++..|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999999999998875 4677888999999988788999999999999999999999999999999999
Q ss_pred HHHHHhccccC
Q 029029 165 YEIAKRLPRVQ 175 (200)
Q Consensus 165 ~~l~~~~~~~~ 175 (200)
+.++++|.+..
T Consensus 167 eelveKIi~tp 177 (209)
T KOG0080|consen 167 EELVEKIIETP 177 (209)
T ss_pred HHHHHHHhcCc
Confidence 99999998754
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.2e-37 Score=222.29 Aligned_cols=170 Identities=32% Similarity=0.575 Sum_probs=155.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.+..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988887777778888887777888888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|||++++.+|+.+..|+..+.... ++.|+++|+||.|+.+.+.+..++++.+++.++++|+++||++|.|++++|+++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999997763 689999999999998877888999999999999999999999999999999999
Q ss_pred HHhccccCCCC
Q 029029 168 AKRLPRVQPAP 178 (200)
Q Consensus 168 ~~~~~~~~~~~ 178 (200)
.+.+..+.+..
T Consensus 163 ~~~i~~~~~~~ 173 (189)
T cd04121 163 ARIVLMRHGRP 173 (189)
T ss_pred HHHHHHhcCCC
Confidence 99888776633
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-37 Score=213.48 Aligned_cols=168 Identities=45% Similarity=0.767 Sum_probs=161.5
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.+...+|++++|+.|+|||+|+.+++...+.+.+..++|+++....+.+++..+++++|||.|++.++.....|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+|+|||++.+++|+.+..|+..++.+..++..+++++||+|+...+.++.++.+.+++.+++.++++||+++.+++|.|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 029029 166 EIAKRLPR 173 (200)
Q Consensus 166 ~l~~~~~~ 173 (200)
.....+.+
T Consensus 162 nta~~Iy~ 169 (216)
T KOG0098|consen 162 NTAKEIYR 169 (216)
T ss_pred HHHHHHHH
Confidence 88887766
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.2e-37 Score=224.55 Aligned_cols=189 Identities=31% Similarity=0.604 Sum_probs=161.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
+||+++|++|+|||||+++|+++.+...+.++.+.++....+..+ +..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999888888888888888777777777 7889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIF 164 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 164 (200)
||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+....+++..+++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876531 3678999999999997666778888999999988 689999999999999999
Q ss_pred HHHHHhccccCCCCCCC------CceeccCCCCCCCCCCCC
Q 029029 165 YEIAKRLPRVQPAPNPS------GMVLMDRPGERTASASCC 199 (200)
Q Consensus 165 ~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~c~ 199 (200)
++|.+.+........+. ..+......+.+++++||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 99999887754322211 344455567778888898
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.8e-36 Score=220.26 Aligned_cols=164 Identities=34% Similarity=0.653 Sum_probs=150.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+.|+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+++|||+|+++++.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999999999998888889888888888888888999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
|++++++|+.+..|+..+......+.|+++|+||+|+.+.+++..++..++++.+ ++.|++|||++|.|++++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887765578999999999999877888888888888875 789999999999999999999999
Q ss_pred hcccc
Q 029029 170 RLPRV 174 (200)
Q Consensus 170 ~~~~~ 174 (200)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88654
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-37 Score=214.95 Aligned_cols=170 Identities=44% Similarity=0.763 Sum_probs=162.6
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+-+||+++|++++|||-|+.++..+.+.....+++|+++....+.+++..++.+||||+|+++|+.....|++.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
++++|||++...+|+.+.+|+.+++.+.++++++++|+||+||.+.+.++.++.+.++++.+..++++||.++.|++++|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccc
Q 029029 165 YEIAKRLPRV 174 (200)
Q Consensus 165 ~~l~~~~~~~ 174 (200)
+.++..|...
T Consensus 169 ~~~l~~I~~~ 178 (222)
T KOG0087|consen 169 ERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHH
Confidence 9888877653
No 11
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.6e-35 Score=214.62 Aligned_cols=189 Identities=40% Similarity=0.675 Sum_probs=160.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
+||+++|++|||||||++++.++.+.. .+.++.+.++....+.+++..+.+++|||||++.+...+..++..+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999887753 4566777777666778888889999999999999988888899999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
+|++++++++.+..|+..+......+.|+++|+||.|+...+.+..++...++..++++|+++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876568899999999999766677778888999889999999999999999999999999
Q ss_pred hccccCCCCCCCCc-eeccCCCCCCCCCCCC
Q 029029 170 RLPRVQPAPNPSGM-VLMDRPGERTASASCC 199 (200)
Q Consensus 170 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~c~ 199 (200)
.+........+.+. .+..-....++.++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQPDEGKFKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhccccCCCCcEEeccccCcccccCCCC
Confidence 99888655443333 4444445566777887
No 12
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=206.50 Aligned_cols=170 Identities=39% Similarity=0.689 Sum_probs=157.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|.+|+|||||++++.+..+...+..++|.++..+.+.+++..+.+++|||+|++++..+...+++++|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCcCccC--CCCCCHHHHHHHHHHc-CCcEEEecCCCCCCH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLD--ARKVTAEEAQAYAQEN-GLFFMETSAKTATNV 160 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 160 (200)
++||++++.+|+.+..|.+++..... ...|+|+++||+|+.+ .++++.+.++.+|+.. ++||||+||+...|+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 99999999999999999999888654 4678999999999965 3788999999999875 579999999999999
Q ss_pred HHHHHHHHHhccccCCC
Q 029029 161 NDIFYEIAKRLPRVQPA 177 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~~~ 177 (200)
+++|+.+.+.+..+...
T Consensus 167 ~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 167 DEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHhccch
Confidence 99999999999988754
No 13
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-35 Score=213.27 Aligned_cols=185 Identities=36% Similarity=0.610 Sum_probs=159.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+++||++|++.+...+..++.++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999988887777888888777777888888899999999999999989999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|++++++++.+..|+..+........|+++++||.|+.+...+..++...+++..+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988655678999999999998777778888888888889999999999999999999999999
Q ss_pred ccccCCCCCCCCceeccCCCCCCCCCCC
Q 029029 171 LPRVQPAPNPSGMVLMDRPGERTASASC 198 (200)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c 198 (200)
+..+......+. ..-++..+++..|
T Consensus 161 ~~~~~~~~~~~~---~~~~~~~~~~~~~ 185 (188)
T cd04125 161 IIKRLEEQELSP---KNIKQQFKKKNNC 185 (188)
T ss_pred HHHHhhcCcCCc---cccccccccccCc
Confidence 988765554442 2334455555555
No 14
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.1e-35 Score=214.30 Aligned_cols=191 Identities=37% Similarity=0.625 Sum_probs=162.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+|+|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999988887778888888887778888888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|||++++++++.+..|+..+.... ...|+++|+||+|+.+...+..++...+++..+++++++||++|.|++++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999987753 578999999999998777777888888988889999999999999999999999
Q ss_pred HHhccccCCCCCCCCcee-----ccCCCCCCCCCCCC
Q 029029 168 AKRLPRVQPAPNPSGMVL-----MDRPGERTASASCC 199 (200)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~c~ 199 (200)
.+.+........+..... ..-+.+...++.||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 163 TELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 999988665555443332 23344445566676
No 15
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.1e-35 Score=213.85 Aligned_cols=185 Identities=31% Similarity=0.528 Sum_probs=154.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
||+++|.+|+|||||+++|..+.+...+.++.+..+ ......++..+.+++|||+|++++...+..++..+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999998888776777766444 3455677888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 92 ITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...+++..+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999998887653 25789999999999987777788888888888899999999999999999999999
Q ss_pred HhccccCCCCCCCCceeccCCCCCCCCCCCCC
Q 029029 169 KRLPRVQPAPNPSGMVLMDRPGERTASASCCS 200 (200)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 200 (200)
+.+..+..+..+.. ...-..+.+++.|||
T Consensus 160 ~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQGPK---GGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhcccCCCc---CCCCCcccccccCce
Confidence 99887766654432 222344455566665
No 16
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=7.8e-35 Score=214.58 Aligned_cols=166 Identities=45% Similarity=0.761 Sum_probs=152.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+++||++|++++...+..+++.++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999988887777888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l 169 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888766789999999999998777788888999999999999999999999999999999
Q ss_pred HHhccc
Q 029029 168 AKRLPR 173 (200)
Q Consensus 168 ~~~~~~ 173 (200)
.+.+.+
T Consensus 170 ~~~i~~ 175 (216)
T PLN03110 170 LLEIYH 175 (216)
T ss_pred HHHHHH
Confidence 988755
No 17
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=6.2e-35 Score=207.03 Aligned_cols=163 Identities=45% Similarity=0.771 Sum_probs=149.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
.+||+++|++|+|||||++++..+.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999888877777888787777778888889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776678999999999999887778888899999999999999999999999999999998
Q ss_pred hcc
Q 029029 170 RLP 172 (200)
Q Consensus 170 ~~~ 172 (200)
.+.
T Consensus 162 ~~~ 164 (166)
T cd04122 162 KIY 164 (166)
T ss_pred HHh
Confidence 764
No 18
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5e-35 Score=211.65 Aligned_cols=184 Identities=32% Similarity=0.557 Sum_probs=155.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999998888777777776554 556677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999998887653 357899999999998776667777788888888899999999999999999999
Q ss_pred HHHhccccCCCCCCCCceeccCCCCCCCCCCCC
Q 029029 167 IAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 199 (200)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 199 (200)
|++.+....++..++ .......+.||
T Consensus 162 l~~~l~~~~~~~~~~-------~~~~~~~~~~~ 187 (189)
T PTZ00369 162 LVREIRKYLKEDMPS-------QKQKKKGGLCL 187 (189)
T ss_pred HHHHHHHHhhccchh-------hhhhccCCeee
Confidence 999988765544333 23344455565
No 19
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.2e-35 Score=214.52 Aligned_cols=184 Identities=36% Similarity=0.602 Sum_probs=146.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|.+|+|||||+++|+.+.+.. ..++.+..+.... ...+.+.+|||+|++.+..++..++.++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 4566665543332 24678999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC-------------------CCCCCHHHHHHHHHHcC-----
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-------------------ARKVTAEEAQAYAQENG----- 146 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 146 (200)
|++++++|+.+..|+..+......+.|+++|+||+|+.+ .+.+..+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888877765556799999999999975 56788899999998876
Q ss_pred ---------CcEEEecCCCCCCHHHHHHHHHHhccccCCCCC---CCCceeccCCCCCCCCCCCC
Q 029029 147 ---------LFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN---PSGMVLMDRPGERTASASCC 199 (200)
Q Consensus 147 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~c~ 199 (200)
++|++|||++|.||+++|..+++.+.....+.. ++.-.-...++-+..+..||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence 689999999999999999999988875432222 11111123344455555666
No 20
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-34 Score=212.34 Aligned_cols=165 Identities=38% Similarity=0.712 Sum_probs=147.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
.+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+ ++..+.+++|||+|++.+...+..++.++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999988887777788887777777766 4667899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
|||++++++++.+..|+..+..... ...|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998876533 457889999999998777788888999999999999999999999999999999
Q ss_pred HHhcccc
Q 029029 168 AKRLPRV 174 (200)
Q Consensus 168 ~~~~~~~ 174 (200)
.+.+...
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9988765
No 21
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1e-34 Score=208.26 Aligned_cols=163 Identities=30% Similarity=0.544 Sum_probs=145.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+++..+||+++|..|+|||||++++..+.+...+.|+.+..+ .....+++..+.+++|||+|++.+..++..+++++|+
T Consensus 1 ~~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~ 79 (182)
T cd04172 1 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 79 (182)
T ss_pred CCcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCE
Confidence 356789999999999999999999999998888888887655 4567778889999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEE
Q 029029 86 AIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFME 151 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 151 (200)
+|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..+++.++++.+++ +|++
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 158 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 158 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999997 79999988764 6799999999999864 245888999999999996 8999
Q ss_pred ecCCCCCC-HHHHHHHHHHh
Q 029029 152 TSAKTATN-VNDIFYEIAKR 170 (200)
Q Consensus 152 ~Sa~~~~~-i~~~~~~l~~~ 170 (200)
|||++|.| ++++|..+++.
T Consensus 159 ~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 159 CSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCcCCCCCCHHHHHHHHHHH
Confidence 99999998 99999998874
No 22
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.1e-34 Score=204.55 Aligned_cols=165 Identities=42% Similarity=0.736 Sum_probs=150.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+++||++|++.+...+..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999998888888888888877778888888999999999999988888899999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
|||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999876557899999999999987777788888899999999999999999999999999999
Q ss_pred Hhccc
Q 029029 169 KRLPR 173 (200)
Q Consensus 169 ~~~~~ 173 (200)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 88753
No 23
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.1e-34 Score=205.48 Aligned_cols=159 Identities=34% Similarity=0.602 Sum_probs=143.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|.+|+|||||+.++..+.+...+.++.+..+ ...+..++..+++++|||+|+++++.+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888887665 445667888999999999999999999999999999999999
Q ss_pred eCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCC----------CCCHHHHHHHHHHcCC-cEEEecCCCCC
Q 029029 91 DITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDAR----------KVTAEEAQAYAQENGL-FFMETSAKTAT 158 (200)
Q Consensus 91 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (200)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.+ .+..+++..+++.+++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987764 579999999999996543 4778899999999998 59999999999
Q ss_pred CHHHHHHHHHHhc
Q 029029 159 NVNDIFYEIAKRL 171 (200)
Q Consensus 159 ~i~~~~~~l~~~~ 171 (200)
||+++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 24
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.2e-34 Score=202.42 Aligned_cols=160 Identities=38% Similarity=0.657 Sum_probs=146.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+++||++|++.+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999998888878888888877778888888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|++++++|+.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++|+++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887655679999999999998777788889999999999999999999999999999999875
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2e-34 Score=205.49 Aligned_cols=165 Identities=30% Similarity=0.533 Sum_probs=146.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++|||+|++.+..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 57999999999999999999999888777777776444 44567788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.++...+++.++++|++|||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998888777643 36799999999999987778888899999999999999999999999999999999
Q ss_pred HhccccC
Q 029029 169 KRLPRVQ 175 (200)
Q Consensus 169 ~~~~~~~ 175 (200)
+.+....
T Consensus 161 ~~~~~~~ 167 (172)
T cd04141 161 REIRRKE 167 (172)
T ss_pred HHHHHhc
Confidence 8877643
No 26
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=198.99 Aligned_cols=193 Identities=36% Similarity=0.660 Sum_probs=164.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
...++.+++|++-+|||+|++.++.+.+.....|+.|++++..-+.+ ++..+++++|||+|+++++...++|++++=++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35689999999999999999999999999999999999988876665 67889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCe-EEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGN-PNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
++|||++++++|+.+..|+++-..... +.++ +.+|++|+||...+++..++++++++.+++.|+++||++|.|+++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999998777644 4444 67889999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCC--CC----------CCCceeccCCCCCCCCCCCCC
Q 029029 165 YEIAKRLPRVQPA--PN----------PSGMVLMDRPGERTASASCCS 200 (200)
Q Consensus 165 ~~l~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~c~~ 200 (200)
..|.+.+...-.+ .. ...--+.-++.....+|.|||
T Consensus 166 ~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 166 DMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 9998877653211 11 111112334556778899998
No 27
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=196.60 Aligned_cols=165 Identities=41% Similarity=0.683 Sum_probs=155.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
.-++.+|+|.+|+|||+|+.++..+.+...+..++|+++...+..+++..++++|||++|++.++.+...++++.+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
|||.++.++|.++.+|++.++... +..|-++|+||.|..+.+.+..++++.++...++.+|++||+++.|++..|.-|.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 999999999999999999999874 5789999999999999999999999999999999999999999999999999888
Q ss_pred Hhcccc
Q 029029 169 KRLPRV 174 (200)
Q Consensus 169 ~~~~~~ 174 (200)
++....
T Consensus 166 ~qvl~~ 171 (198)
T KOG0079|consen 166 KQVLQA 171 (198)
T ss_pred HHHHHH
Confidence 776543
No 28
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=6.1e-34 Score=206.20 Aligned_cols=163 Identities=29% Similarity=0.500 Sum_probs=142.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+.+||+++|+.|+|||||++++..+.+...+.++.+..+ .....+++..+.+++|||+|+++++.++..++.++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 458999999999999999999999988888888887554 3445678888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcC-CcEEEecC
Q 029029 89 VYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENG-LFFMETSA 154 (200)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa 154 (200)
|||++++.+|+.+. .|+..+... .++.|+++|+||.|+.+.. .+..+++..+++.++ ++|+++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 688877665 3679999999999996542 356678889998888 58999999
Q ss_pred CCCCCHHHHHHHHHHhccc
Q 029029 155 KTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~ 173 (200)
++|.|++++|+++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998754
No 29
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5e-34 Score=202.19 Aligned_cols=162 Identities=38% Similarity=0.655 Sum_probs=146.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++....+++||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 69999999999999999999998887777788887776667777788899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|.+++++++.+..|+..+........|+++|+||+|+.+.+....++..++++..+++++++||++|.|++++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999887665678999999999998777777888888888889999999999999999999999886
Q ss_pred cc
Q 029029 171 LP 172 (200)
Q Consensus 171 ~~ 172 (200)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 30
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-35 Score=193.62 Aligned_cols=169 Identities=34% Similarity=0.613 Sum_probs=159.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
..-+|++++|+..+|||||+.++++..+.+..-++.|+++..+++......+++++|||.|+++++.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 44679999999999999999999999999888899999998888888888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
++||+++.++|+.++.|...+......+.|+|+++||+|+.+++.++.+..+.+++.+|..||++||+.+.|++.+|+.+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCC
Q 029029 168 AKRLPRVQP 176 (200)
Q Consensus 168 ~~~~~~~~~ 176 (200)
...+-+...
T Consensus 179 v~~Ic~kms 187 (193)
T KOG0093|consen 179 VDIICDKMS 187 (193)
T ss_pred HHHHHHHhh
Confidence 988766543
No 31
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.5e-33 Score=204.56 Aligned_cols=186 Identities=40% Similarity=0.689 Sum_probs=152.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
+||+|+|++|+|||||+++|+++.+.. .+.++.+..+....+.+++..+.+.+||++|++++...+..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888764 5677887777777888889899999999999999988888899999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC----CCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA----RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
||++++.+++.+..|+..+... ..+.|+++|+||.|+.+. ..+...++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999988775 357899999999998542 34455677888888889999999999999999999
Q ss_pred HHHHhccccCCCC--CCCCceeccCCCCCCCCCCCC
Q 029029 166 EIAKRLPRVQPAP--NPSGMVLMDRPGERTASASCC 199 (200)
Q Consensus 166 ~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~c~ 199 (200)
++.+.+....... ...+.-...+ +..+.++||
T Consensus 160 ~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 193 (193)
T cd04118 160 KVAEDFVSRANNQMNTEKGVDLGQK--KNSYFYSCC 193 (193)
T ss_pred HHHHHHHHhcccccCCCCccccCCc--CCCCCCCCC
Confidence 9999886643221 1222222222 235788888
No 32
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=6.5e-34 Score=201.72 Aligned_cols=163 Identities=47% Similarity=0.762 Sum_probs=148.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+++||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999998888777778888777777888888889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
||+++++++..+..|+..+......+.|+++++||.|+.+.+.+..+++..+++..+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998875567899999999999877778888899999999999999999999999999999998
Q ss_pred hcc
Q 029029 170 RLP 172 (200)
Q Consensus 170 ~~~ 172 (200)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 774
No 33
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=9.3e-34 Score=200.92 Aligned_cols=162 Identities=29% Similarity=0.612 Sum_probs=147.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+++|||+|++.+...+..++..+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888888888888888889999999999999998889999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQGN-----PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
|.+++.+++.+..|+..+..... .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877543 5789999999999976566778888888888899999999999999999999
Q ss_pred HHHHhcc
Q 029029 166 EIAKRLP 172 (200)
Q Consensus 166 ~l~~~~~ 172 (200)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998764
No 34
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-33 Score=202.61 Aligned_cols=159 Identities=30% Similarity=0.546 Sum_probs=141.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999988888888886655 45677788999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEEecCC
Q 029029 90 YDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFMETSAK 155 (200)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (200)
||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..+++.++++.+++ +|++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 79999988764 6789999999999864 235788999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHh
Q 029029 156 TATN-VNDIFYEIAKR 170 (200)
Q Consensus 156 ~~~~-i~~~~~~l~~~ 170 (200)
+|.+ ++++|..+++.
T Consensus 159 ~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 159 TSEKSVRDIFHVATMA 174 (178)
T ss_pred cCCcCHHHHHHHHHHH
Confidence 9995 99999999884
No 35
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-33 Score=207.57 Aligned_cols=165 Identities=27% Similarity=0.476 Sum_probs=146.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|+.|+|||||++++..+.+...+.++.+..+. ..+.+++..+.+++|||+|++.+..+...++.++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 46889999999999999999999999998888888876653 45777889999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEEec
Q 029029 88 IVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFMETS 153 (200)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 153 (200)
+|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..++++++++.+++ .|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999985 89999988764 5789999999999864 256888999999999999 699999
Q ss_pred CCCCC-CHHHHHHHHHHhcccc
Q 029029 154 AKTAT-NVNDIFYEIAKRLPRV 174 (200)
Q Consensus 154 a~~~~-~i~~~~~~l~~~~~~~ 174 (200)
|++|. |++++|..++..+...
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99998 8999999999887654
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.1e-33 Score=203.07 Aligned_cols=165 Identities=35% Similarity=0.610 Sum_probs=147.1
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC----------CeEEEEEEEeCCCccccccchhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----------DATVKFEIWDTAGQERYHSLAPM 78 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~ 78 (200)
+.+||+++|++|||||||++++.++.+...+.++.+.++........ +..+.+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999998888888888877766665553 45688999999999999999999
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 157 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (200)
+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999887753 357899999999999877778888899999999999999999999
Q ss_pred CCHHHHHHHHHHhccc
Q 029029 158 TNVNDIFYEIAKRLPR 173 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~ 173 (200)
.|++++|++|.+.+.+
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987653
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.6e-33 Score=198.86 Aligned_cols=161 Identities=43% Similarity=0.770 Sum_probs=152.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
||+++|+.+||||||+++|.++.+...+.++.|.+........++..+.+++||++|++.+......++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998898999899999999999999999999999999998888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029 92 ITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
.+++++++.+..|+..+........|+++++||.|+.+.+.++.++++.+++.++++|+++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998666799999999999988888999999999999999999999999999999999999876
Q ss_pred c
Q 029029 172 P 172 (200)
Q Consensus 172 ~ 172 (200)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.6e-33 Score=206.48 Aligned_cols=164 Identities=36% Similarity=0.536 Sum_probs=147.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+++||++|++.+...+..++.++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999998888888889998888777777754 578999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+....+++.++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999988753 245689999999999877778888899999999999999999999999999999
Q ss_pred HHHhcccc
Q 029029 167 IAKRLPRV 174 (200)
Q Consensus 167 l~~~~~~~ 174 (200)
+.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988754
No 39
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.6e-33 Score=198.41 Aligned_cols=163 Identities=45% Similarity=0.795 Sum_probs=148.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
..+||+++|++|||||||++++.++.+.....++.+.++....+..++....+.+||+||++.+...+..++..++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35799999999999999999999888877778888888888888888888999999999999999899999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
|+|++++.++..+..|+..+......+.|+++|+||.|+.+.+....++...++...+++++++||++|.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998887655799999999999987777788888899888899999999999999999999998
Q ss_pred Hhc
Q 029029 169 KRL 171 (200)
Q Consensus 169 ~~~ 171 (200)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.7e-33 Score=202.24 Aligned_cols=164 Identities=26% Similarity=0.510 Sum_probs=143.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|+.|+|||||++++..+.+...+.++.|.++....+..++..+.+++||++|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999888888899998888788888888999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC-----CCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-----RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
|++++++++.+..|+..+........| ++|+||+|+... .....++...+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876545566 678999998521 11224567788888899999999999999999999
Q ss_pred HHHHhccccC
Q 029029 166 EIAKRLPRVQ 175 (200)
Q Consensus 166 ~l~~~~~~~~ 175 (200)
++.+.+.+-.
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9999887533
No 41
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.8e-33 Score=197.47 Aligned_cols=161 Identities=49% Similarity=0.807 Sum_probs=147.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+|+|++|+|||||+++|+++.+.....++.+.++......+++....+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998888777888888887788888888899999999999999888999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|+++++++..+..|+..+.....++.|+++++||.|+.+.+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998887766889999999999998777788888999999999999999999999999999999875
Q ss_pred c
Q 029029 171 L 171 (200)
Q Consensus 171 ~ 171 (200)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
No 42
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3e-33 Score=198.19 Aligned_cols=163 Identities=45% Similarity=0.739 Sum_probs=146.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++....+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888877777888777777778788888899999999999998888999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l 167 (200)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..+++..+. .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876667899999999999987777788888899888876 68999999999999999999
Q ss_pred HHhc
Q 029029 168 AKRL 171 (200)
Q Consensus 168 ~~~~ 171 (200)
.+.+
T Consensus 162 ~~~l 165 (165)
T cd01864 162 ATEL 165 (165)
T ss_pred HHhC
Confidence 8764
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3e-33 Score=197.58 Aligned_cols=161 Identities=36% Similarity=0.599 Sum_probs=141.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+++|++|||||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++++...+..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999998887776666665 34456677788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887753 35789999999999977666777778888888889999999999999999999998
Q ss_pred Hhc
Q 029029 169 KRL 171 (200)
Q Consensus 169 ~~~ 171 (200)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 865
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=4.9e-33 Score=197.65 Aligned_cols=165 Identities=43% Similarity=0.766 Sum_probs=149.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
..+||+++|++|+|||||+++++++.+.....++.+.++....+..++....+.+||++|++.+......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888877777888888878888888888899999999999988888899999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
|+|++++.+++.+..|+..+.....++.|+++|+||.|+.+...+..++.+.++...++.++++||+++.|++++|.+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887667899999999999987667788888889988999999999999999999999999
Q ss_pred Hhccc
Q 029029 169 KRLPR 173 (200)
Q Consensus 169 ~~~~~ 173 (200)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T cd01866 163 KEIYE 167 (168)
T ss_pred HHHHh
Confidence 87643
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=3.7e-33 Score=197.48 Aligned_cols=162 Identities=36% Similarity=0.618 Sum_probs=142.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+++|.+|+|||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998887777777776544 35667778889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
||.+++.+++.+..|+..+... ...+.|+++|+||+|+.+...+..++...+++..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999888764 346799999999999987666777778888888899999999999999999999999
Q ss_pred Hhcc
Q 029029 169 KRLP 172 (200)
Q Consensus 169 ~~~~ 172 (200)
+++.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 46
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-34 Score=189.23 Aligned_cols=166 Identities=43% Similarity=0.713 Sum_probs=157.3
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
...-+|++++|+.|+|||.|++++....+....+.++|+++.+..+.+.++.+++++|||+|+++++.....|++++.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
++|||++++++|+.+..|+...+....+++-+++++||.|+.+.+++...++..++++..+.+.++||++|+|+++.|-.
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999987
Q ss_pred HHHhcc
Q 029029 167 IAKRLP 172 (200)
Q Consensus 167 l~~~~~ 172 (200)
..+.|.
T Consensus 166 c~~tIl 171 (214)
T KOG0086|consen 166 CARTIL 171 (214)
T ss_pred HHHHHH
Confidence 666554
No 47
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.1e-33 Score=201.30 Aligned_cols=178 Identities=29% Similarity=0.531 Sum_probs=148.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
+||+|+|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||+|++.+...+..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999988877777776655543 34444 6788999999999999998898899999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC----CCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHH
Q 029029 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA----RKVTAEEAQAYAQENGL-FFMETSAKTATNVNDI 163 (200)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 163 (200)
||++++++|+.+. .|+..+... .++.|+++|+||.|+... +.+..++..+++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 588877654 367899999999998653 24567788889989988 8999999999999999
Q ss_pred HHHHHHhccccCCCCCCCCceeccCCCCCCCCCCCC
Q 029029 164 FYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 199 (200)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 199 (200)
|+.+.+.+....... .+...+.+..||
T Consensus 159 f~~l~~~~~~~~~~~---------~~~~~~~~~~c~ 185 (187)
T cd04132 159 FDTAIEEALKKEGKA---------IFKKKKKKRKCV 185 (187)
T ss_pred HHHHHHHHHhhhhhh---------hhccCCCCcccc
Confidence 999999988765544 345566666664
No 48
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=202.01 Aligned_cols=167 Identities=41% Similarity=0.753 Sum_probs=151.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..++..+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988887777788888887778888888899999999999999888889999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|||+++++++..+..|+..+........|+++++||+|+.+.+.+..++..++++.++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877656789999999999998777788888999999999999999999999999999999
Q ss_pred HHhcccc
Q 029029 168 AKRLPRV 174 (200)
Q Consensus 168 ~~~~~~~ 174 (200)
++.+...
T Consensus 164 ~~~~~~~ 170 (210)
T PLN03108 164 AAKIYKK 170 (210)
T ss_pred HHHHHHH
Confidence 9888764
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=7.5e-33 Score=204.29 Aligned_cols=164 Identities=32% Similarity=0.552 Sum_probs=146.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|.+|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++.+..++..++.++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999989888888899998888877777788899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|||++++.++..+..|+..+... ..+.|+++|+||+|+.+. ....+.+ .+++..+++|+++||++|.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999999999999876 367999999999998643 3444444 6777788999999999999999999999
Q ss_pred HHhcccc
Q 029029 168 AKRLPRV 174 (200)
Q Consensus 168 ~~~~~~~ 174 (200)
++.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9998765
No 50
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=7.9e-33 Score=195.53 Aligned_cols=163 Identities=53% Similarity=0.881 Sum_probs=148.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|||||||++++++..+.....++.+.++....+..++....+.+||+||++.+......++..+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887777788887777777888888889999999999999889999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|++++.+++.+..|+..+.....+++|+++++||+|+...+....+.+..+++..+++++++||++|.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999899999888766789999999999987767778888888998899999999999999999999999998
Q ss_pred ccc
Q 029029 171 LPR 173 (200)
Q Consensus 171 ~~~ 173 (200)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=8.3e-33 Score=197.61 Aligned_cols=159 Identities=27% Similarity=0.481 Sum_probs=138.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+++|||+|++.+...+..++.++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999998888788888876553 45667788899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEecCCC
Q 029029 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMETSAKT 156 (200)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 156 (200)
|++++++|+.+. .|+..+.... ++.|+++|+||+|+.+. +.+..+++.++++..+ +.|+++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 5888887653 57899999999998653 4566778888888877 6899999999
Q ss_pred CCCHHHHHHHHHHhc
Q 029029 157 ATNVNDIFYEIAKRL 171 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~ 171 (200)
|.|++++|+.+++..
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
No 52
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=8.3e-33 Score=195.17 Aligned_cols=159 Identities=38% Similarity=0.658 Sum_probs=143.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+||+++|++|+|||||++++.++.+...+.++.+.++......+. +..+.+++||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999888877778888888777777776 778899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
|||+++++++..+..|+..+... ..++|+++|+||.|+.....+..+++..+++..+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988764 35799999999999987777788888999999999999999999999999999997
Q ss_pred Hh
Q 029029 169 KR 170 (200)
Q Consensus 169 ~~ 170 (200)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 53
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.7e-32 Score=200.63 Aligned_cols=171 Identities=40% Similarity=0.656 Sum_probs=146.6
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
......+||+|+|++|+|||||+++|+++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 4446689999999999999999999997765 456778887777777778888899999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029 85 AAIIVYDITNQASFERAKK-WVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 162 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (200)
++|+|||.+++++|..+.. |...+.... ..+.|+++|+||.|+.....+..++...++..++++|+++||+++.|+++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999865 555555432 34678999999999987667777888888888999999999999999999
Q ss_pred HHHHHHHhccccCC
Q 029029 163 IFYEIAKRLPRVQP 176 (200)
Q Consensus 163 ~~~~l~~~~~~~~~ 176 (200)
+|++|.+.+.+...
T Consensus 168 l~~~l~~~~~~~~~ 181 (211)
T PLN03118 168 CFEELALKIMEVPS 181 (211)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999977643
No 54
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-34 Score=188.43 Aligned_cols=167 Identities=42% Similarity=0.722 Sum_probs=156.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
...-+||+++|+.|+|||.|++++..+.+++-...++|+++..++..+++..+++++|||+|+++++...++|++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|||++-..+|+-+.+|+.++..+....+--|+|+||+|+.+.++++....+++++.....|.++||++..|++.+|..
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence 99999999899999999999999987778888999999999998899999999999998888999999999999999998
Q ss_pred HHHhccc
Q 029029 167 IAKRLPR 173 (200)
Q Consensus 167 l~~~~~~ 173 (200)
+.-++..
T Consensus 164 ~a~rli~ 170 (213)
T KOG0095|consen 164 LACRLIS 170 (213)
T ss_pred HHHHHHH
Confidence 8766544
No 55
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.5e-32 Score=194.18 Aligned_cols=161 Identities=38% Similarity=0.612 Sum_probs=140.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+++|.+|+|||||+++++.+.+...+.++.+ ......+.+++....+++|||+|++++...+..++.++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999998888776666654 44556677788888999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887753 36899999999999976666677777888888889999999999999999999998
Q ss_pred Hhc
Q 029029 169 KRL 171 (200)
Q Consensus 169 ~~~ 171 (200)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 865
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.4e-32 Score=194.86 Aligned_cols=160 Identities=34% Similarity=0.625 Sum_probs=140.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|||||||+++++.+.+...+.++.+.+........++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888888877777777888899999999999998888889999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|+++++++..+..|+..+..... ++|+++|+||+|+.+ +.... ....+++..+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988743 899999999999863 23333 3456667778899999999999999999999998
Q ss_pred ccc
Q 029029 171 LPR 173 (200)
Q Consensus 171 ~~~ 173 (200)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.4e-32 Score=195.52 Aligned_cols=162 Identities=32% Similarity=0.597 Sum_probs=142.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
||+++|.+|||||||++++..+.+...+.++.+.++.......++....+++|||||++++...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888999888877788888888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCC--CCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARK--VTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
.+++++++.+..|+..+..... ...|+++|+||+|+.+... ...+++..+++.++.+++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998866533 3568999999999865433 345567778888889999999999999999999999
Q ss_pred Hhccc
Q 029029 169 KRLPR 173 (200)
Q Consensus 169 ~~~~~ 173 (200)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 87754
No 58
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.1e-32 Score=192.90 Aligned_cols=161 Identities=43% Similarity=0.775 Sum_probs=145.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
.||+++|++|||||||+++++++.+.....++.+.++....+..++....+++||+||++.+...+..++..+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988887777788888888888888888889999999999999988999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|++++++++.+..|+..+......+.|+++++||+|+.+.+....++...+++..+++++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877654579999999999997666778888888888889999999999999999999999875
Q ss_pred c
Q 029029 171 L 171 (200)
Q Consensus 171 ~ 171 (200)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 3
No 59
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.6e-34 Score=190.14 Aligned_cols=170 Identities=42% Similarity=0.736 Sum_probs=158.5
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.+...+||+++|..-+|||||+-++..+.+....-.+....+......+++....+.+|||+|+++|..+.+.|++++|+
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 34668999999999999999999999999988777787778888888898999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+++|||++++++|..+..|..+++......+-+++|+||+|+.+++++.-+++..++..-+..|+++||+++.||.++|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 99999999999999999999999998777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccC
Q 029029 166 EIAKRLPRVQ 175 (200)
Q Consensus 166 ~l~~~~~~~~ 175 (200)
.|..+..+..
T Consensus 169 ~Lt~~MiE~~ 178 (218)
T KOG0088|consen 169 SLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHh
Confidence 9988887764
No 60
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.4e-32 Score=192.22 Aligned_cols=162 Identities=70% Similarity=1.063 Sum_probs=147.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+++|++|+|||||+++|+++.+.....++.+..+......+++....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998888776778888777778888888999999999999998888888899999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
+|+++++++.....|+..+........|+++++||+|+........++...++...+++++++||++|.|++++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988876678999999999998766677888888888888999999999999999999999998
Q ss_pred hc
Q 029029 170 RL 171 (200)
Q Consensus 170 ~~ 171 (200)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 76
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.5e-32 Score=193.52 Aligned_cols=159 Identities=35% Similarity=0.483 Sum_probs=137.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++++++.+...+.++.+..+ ......+...+.+.+|||+|++++...+..++..+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999998888766666665433 445556777889999999999999988888999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
|++++++++.+..|+..+.... .++.|+++|+||+|+.+.+.+..++...++..+++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999888776642 2678999999999997766777777888888889999999999999999999999
Q ss_pred HHh
Q 029029 168 AKR 170 (200)
Q Consensus 168 ~~~ 170 (200)
.+.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 864
No 62
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.3e-32 Score=199.58 Aligned_cols=162 Identities=26% Similarity=0.486 Sum_probs=140.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+|+|+.|+|||||++++..+.++..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..++..++.++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999998888888888876553 5667788999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCC
Q 029029 90 YDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAK 155 (200)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (200)
||++++++|+.+ ..|...+... .++.|+++|+||+|+.+. ..+..++...+++..++ +|+||||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999998 5677666554 478999999999999652 13677889999999995 89999999
Q ss_pred CCCC-HHHHHHHHHHhccc
Q 029029 156 TATN-VNDIFYEIAKRLPR 173 (200)
Q Consensus 156 ~~~~-i~~~~~~l~~~~~~ 173 (200)
++.+ |+++|+..+.....
T Consensus 159 ~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 159 SSERSVRDVFHVATVASLG 177 (222)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9985 99999998886554
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.2e-32 Score=193.16 Aligned_cols=164 Identities=40% Similarity=0.655 Sum_probs=144.4
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+++|++|+|||||+++++++.+.....++.+.++....+..++..+.+++||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34579999999999999999999998888777778888777777788889999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVN 161 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 161 (200)
++|||++++++++.+..|+..+.... ..+.|+++|+||.|+. .+....++++++++.++. +++++||++|.|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999998776642 2568999999999986 456677888999888874 79999999999999
Q ss_pred HHHHHHHHhc
Q 029029 162 DIFYEIAKRL 171 (200)
Q Consensus 162 ~~~~~l~~~~ 171 (200)
++|+++++.+
T Consensus 161 ~~~~~~~~~~ 170 (170)
T cd04116 161 AAFEEAVRRV 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3.1e-32 Score=193.89 Aligned_cols=162 Identities=38% Similarity=0.667 Sum_probs=145.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCcEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAII 88 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 88 (200)
.+||+++|++|+|||||+++++.+.+...+.++.+.++.......++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999888877778888888877888888889999999999998876 567888999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC---CCCHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT---ATNVNDIF 164 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 164 (200)
|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..++...+++..+++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887753 36799999999999988778888888999999999999999999 89999999
Q ss_pred HHHHHhc
Q 029029 165 YEIAKRL 171 (200)
Q Consensus 165 ~~l~~~~ 171 (200)
.++++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998866
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=4.4e-32 Score=191.50 Aligned_cols=160 Identities=31% Similarity=0.531 Sum_probs=139.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|.+|+|||||+++++.+.+.+...++.+.+........++..+.+.+|||+|++.+...+..++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988887777777776777777777888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|.+++.++..+..|+..+... .++.|+++|+||+|+... ...+...+++..+++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999998765 357899999999998432 2344556667778999999999999999999999988
Q ss_pred cccc
Q 029029 171 LPRV 174 (200)
Q Consensus 171 ~~~~ 174 (200)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 7665
No 66
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.5e-32 Score=196.20 Aligned_cols=163 Identities=31% Similarity=0.546 Sum_probs=138.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
.||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++....+++||++|++.+..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 4899999999999999999999888777777776554 345566778899999999999999989989999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcC-CcEEEecCCC
Q 029029 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENG-LFFMETSAKT 156 (200)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 156 (200)
|++++++|+.+. .|+..+... .++.|+++|+||+|+.+.. .+..++...+++..+ ++|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999885 688888765 3579999999999996543 245566777777776 6899999999
Q ss_pred CCCHHHHHHHHHHhccccC
Q 029029 157 ATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~~ 175 (200)
|.|++++|.++.+.+....
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999887443
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=3.3e-32 Score=192.51 Aligned_cols=162 Identities=35% Similarity=0.616 Sum_probs=140.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+|+|++|||||||+++++++.+...+.++.+ +........++..+.+.+|||||++++...+..++..+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999998887766666554 334556667788899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+....+.+..+++..+++++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988876643 357899999999999776667777888888888999999999999999999999998
Q ss_pred hccc
Q 029029 170 RLPR 173 (200)
Q Consensus 170 ~~~~ 173 (200)
.+..
T Consensus 160 ~~~~ 163 (164)
T smart00173 160 EIRK 163 (164)
T ss_pred HHhh
Confidence 7653
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.5e-32 Score=191.28 Aligned_cols=161 Identities=32% Similarity=0.540 Sum_probs=139.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
.+||+++|++|+|||||+++++++.+...+.++.+..+ .....+++....+.+|||||++++...+..++.++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999998877666666655333 44456778889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
+|++++.+++.+..|+..+... ...+.|+++++||+|+...+.+..++...+++..+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999888764 346789999999999977666777778888888899999999999999999999998
Q ss_pred Hhc
Q 029029 169 KRL 171 (200)
Q Consensus 169 ~~~ 171 (200)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 865
No 69
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=5.1e-32 Score=193.37 Aligned_cols=159 Identities=31% Similarity=0.523 Sum_probs=138.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
.+||+++|.+|||||||+.+++.+.+...+.++.+. ........++..+.+++|||+|++.+...+..++.++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 379999999999999999999988888777777753 3345566788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCC
Q 029029 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAK 155 (200)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (200)
||++++++|+.+. .|+..+... .++.|+++|+||+|+.+. +.+..+++..+++.++. +++++||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999985 688877665 357999999999999542 24678888999998885 89999999
Q ss_pred CCCCHHHHHHHHHHh
Q 029029 156 TATNVNDIFYEIAKR 170 (200)
Q Consensus 156 ~~~~i~~~~~~l~~~ 170 (200)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=6e-32 Score=196.49 Aligned_cols=169 Identities=22% Similarity=0.272 Sum_probs=139.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhcC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYRG 82 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 82 (200)
+||+|+|.+|+|||||++++.++.+...+.++.+.+.....+..++..+.+++|||||...+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999988887777777766666666777888899999999997543211 2234689
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCCC
Q 029029 83 AAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTAT 158 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 158 (200)
+|++|+|||++++++++.+..|++.+.... ..++|+++|+||+|+.+.+....++...++. .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887653 4679999999999997766666776776654 568999999999999
Q ss_pred CHHHHHHHHHHhccccCCCCC
Q 029029 159 NVNDIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~~~~~~~ 179 (200)
|++++|+.+++.+..+.+...
T Consensus 161 ~v~~lf~~i~~~~~~~~~~~~ 181 (198)
T cd04142 161 HILLLFKELLISATTRGRSTH 181 (198)
T ss_pred CHHHHHHHHHHHhhccCCCcc
Confidence 999999999998887665533
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=6.6e-32 Score=190.29 Aligned_cols=160 Identities=31% Similarity=0.580 Sum_probs=138.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+++|++|+|||||+++|+++.+...+.++.+..+ .....+++....+.+||++|++.+..++..++.++|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999998887777767765443 45566778888899999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +.....++..+++..+++++++||++|.|++++|+++.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999998988887653 35789999999999865 45566778888888899999999999999999999998
Q ss_pred Hhc
Q 029029 169 KRL 171 (200)
Q Consensus 169 ~~~ 171 (200)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 764
No 72
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.8e-31 Score=188.74 Aligned_cols=160 Identities=35% Similarity=0.568 Sum_probs=140.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC--cccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
+||+++|++|||||||++++..+ .+...+.++.|.++......++ +....+.+||+||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999854 5667778888877766666664 56799999999999998888899999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|+|.+++++++.+..|++.+.... .+.|+++|+||+|+.+..++.......+....+++++++||+++.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999888764 578999999999997766677767777777888999999999999999999999
Q ss_pred HHhc
Q 029029 168 AKRL 171 (200)
Q Consensus 168 ~~~~ 171 (200)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8865
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.5e-31 Score=194.23 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=139.4
Q ss_pred ECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH
Q 029029 16 LGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ 95 (200)
Q Consensus 16 vG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 95 (200)
+|..|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++++..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888878888999888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 96 ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 96 ~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
.++..+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..+++..++.|++|||++|.|++++|.+|++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998763 5799999999999864 3344443 467778899999999999999999999999988664
No 74
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=4.2e-31 Score=186.20 Aligned_cols=161 Identities=47% Similarity=0.805 Sum_probs=142.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++|+++.+.....++.+...........+....+.+||+||++.+...+..++.++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988776655566656666666777778889999999999988888999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|+++++++..+..|++.+......++|+++++||+|+.....+..++...+++..+++++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888765689999999999998766777788888888889999999999999999999999886
Q ss_pred c
Q 029029 171 L 171 (200)
Q Consensus 171 ~ 171 (200)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 75
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.5e-31 Score=185.91 Aligned_cols=165 Identities=39% Similarity=0.729 Sum_probs=145.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....++|+++|++|+|||||++++..+.+.....++.+.+.......+.+....+.+||++|+..+...+..++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35579999999999999999999998777766777777777777788888888999999999998888888999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+++..+....+.+....+++++||++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999999888766567999999999999776677777677777777788999999999999999999
Q ss_pred HHHhc
Q 029029 167 IAKRL 171 (200)
Q Consensus 167 l~~~~ 171 (200)
+.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98764
No 76
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=5.3e-31 Score=197.16 Aligned_cols=163 Identities=25% Similarity=0.414 Sum_probs=139.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|.+|+|||||+++++++.+...+.++.+ ++....+.+++..+.+.+|||+|++.+......++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998888777777765 455667778888899999999999988888888889999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHh---------CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-cCCcEEEecCCCCCCH
Q 029029 91 DITNQASFERAKKWVQELQAQ---------GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNV 160 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~---------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 160 (200)
|++++++|+.+..|++.+... ...++|+++|+||+|+.+.+.+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 235789999999999976666777777777654 4678999999999999
Q ss_pred HHHHHHHHHhcccc
Q 029029 161 NDIFYEIAKRLPRV 174 (200)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (200)
+++|++|.+.+...
T Consensus 160 ~elf~~L~~~~~~p 173 (247)
T cd04143 160 DEMFRALFSLAKLP 173 (247)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999976443
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=4.3e-31 Score=191.38 Aligned_cols=158 Identities=26% Similarity=0.409 Sum_probs=128.6
Q ss_pred ceeEEEECCCCCCHHHHHH-HHHhCc-----ccCcccCccee-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 029029 10 NAKLVLLGDVGAGKSSLVL-RFVKGQ-----FIEFQESTIGA-AFFSQT--------LAVNDATVKFEIWDTAGQERYHS 74 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 74 (200)
.+||+++|..|+|||||+. ++.++. +...+.|+.+. +.+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5799999999999999995 565433 33445666642 222222 25678899999999999975 2
Q ss_pred chhhhhcCCcEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccC-------------------CCCCC
Q 029029 75 LAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD-------------------ARKVT 134 (200)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~-------------------~~~~~ 134 (200)
....+++++|++|+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4456889999999999999999999996 6988887653 5789999999999864 36778
Q ss_pred HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 135 AEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
.++++.+++.++++|++|||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999864
No 78
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=5.6e-31 Score=185.08 Aligned_cols=154 Identities=24% Similarity=0.448 Sum_probs=129.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|+.|+|||||+++++.+.+...+.++ +..+ ...+.+++..+.+++||++|++. ..++..+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988776655444 2233 46677888889999999999975 34678899999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccC--CCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLD--ARKVTAEEAQAYAQEN-GLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|++++.+|+.+..|+..+..... .+.|+++|+||.|+.. .+.+..++++++++.. ++.|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877643 6789999999999853 4667788888888776 589999999999999999999
Q ss_pred HHHhc
Q 029029 167 IAKRL 171 (200)
Q Consensus 167 l~~~~ 171 (200)
+++++
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 98753
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.2e-30 Score=184.08 Aligned_cols=160 Identities=44% Similarity=0.752 Sum_probs=142.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988877777788888877777777888899999999999999888889999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
|.+++.+++.+..|+..+.... ..+.|+++++||+|+.. .....++...+++..+++++++||++|.|++++++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999988999887763 46899999999999873 455677888888889999999999999999999999987
Q ss_pred hc
Q 029029 170 RL 171 (200)
Q Consensus 170 ~~ 171 (200)
.+
T Consensus 160 ~~ 161 (161)
T cd01863 160 KI 161 (161)
T ss_pred hC
Confidence 63
No 80
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=8.8e-31 Score=186.06 Aligned_cols=162 Identities=33% Similarity=0.587 Sum_probs=141.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+++|++|+|||||++++.++.+...+.++.+.. .......++..+.+++||+||++.+..++..++..++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 4799999999999999999999888877666766543 356667778889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l 167 (200)
||.+++++++.+..|...+... ...+.|+++++||.|+.+.+....++...+++.++ ++++++||+++.|++++|.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999998888764 24679999999999998777777777888888887 789999999999999999999
Q ss_pred HHhcc
Q 029029 168 AKRLP 172 (200)
Q Consensus 168 ~~~~~ 172 (200)
+.++.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 88653
No 81
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1e-30 Score=186.12 Aligned_cols=164 Identities=42% Similarity=0.724 Sum_probs=143.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|||||||++++.++.+.....++.+.++.......++....+.+||+||++.+...+..+++.+|++|+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988877777777777777777788888899999999999999889999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 165 (200)
|++++.+++.+..|...+.... ..++|+++|+||+|+........++...+++..+ ++++++||++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 9999999988888887765542 2379999999999997656667788888888887 7899999999999999999
Q ss_pred HHHHhcccc
Q 029029 166 EIAKRLPRV 174 (200)
Q Consensus 166 ~l~~~~~~~ 174 (200)
++.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999887665
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=5.8e-31 Score=187.92 Aligned_cols=158 Identities=34% Similarity=0.559 Sum_probs=136.2
Q ss_pred EEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeC
Q 029029 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI 92 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 92 (200)
|+|+|++|+|||||+++++++.+...+.++.+.. ....+..++..+.+++|||||++.+...+..++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999988877776666544 344566788889999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcCC-cEEEecCCCCC
Q 029029 93 TNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENGL-FFMETSAKTAT 158 (200)
Q Consensus 93 ~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (200)
+++++|+.+. .|+..+.... ++.|+++|+||+|+.... .+..+++..+++..+. +++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 6888887753 689999999999986532 3667778889999886 89999999999
Q ss_pred CHHHHHHHHHHhcc
Q 029029 159 NVNDIFYEIAKRLP 172 (200)
Q Consensus 159 ~i~~~~~~l~~~~~ 172 (200)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=5.1e-31 Score=186.72 Aligned_cols=160 Identities=33% Similarity=0.536 Sum_probs=135.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCcEEEEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 90 (200)
||+++|++|+|||||+++++.+.+...+.++.+.. ......+++..+.+++||+||++. .......+++.+|++|+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999877766665655433 345567788889999999999885 3445677889999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEI 167 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l 167 (200)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||+++. |++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887753 3579999999999997767778888889998899999999999995 999999999
Q ss_pred HHhcc
Q 029029 168 AKRLP 172 (200)
Q Consensus 168 ~~~~~ 172 (200)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 84
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=5e-31 Score=187.45 Aligned_cols=163 Identities=20% Similarity=0.229 Sum_probs=139.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
+-+||+++|.+|+|||||+++++++.+. ..+.++.+..+....+..++....+.+||++|++.+...+..++.++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999999988887 778888887777677777888889999999999999888899999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 166 (200)
+|+|.+++.+++.+..|+..+... .++|+++|+||.|+.+.......+...+++..++ .++++||+++.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999988888766432 4789999999999865544434445677777777 4799999999999999999
Q ss_pred HHHhccc
Q 029029 167 IAKRLPR 173 (200)
Q Consensus 167 l~~~~~~ 173 (200)
+.+.+..
T Consensus 161 l~~~~~~ 167 (169)
T cd01892 161 LATAAQY 167 (169)
T ss_pred HHHHhhC
Confidence 9998753
No 85
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=1.1e-30 Score=183.04 Aligned_cols=159 Identities=55% Similarity=0.906 Sum_probs=144.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||++++.++.+.....++.+.++.......++....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888777788888888888888888899999999999988888999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
|+++++++..+..|+..+........|+++++||+|+........++...++..++++++++||+++.|+++++++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999998876578999999999999756667788899999888999999999999999999999863
No 86
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.5e-31 Score=173.11 Aligned_cols=169 Identities=44% Similarity=0.745 Sum_probs=159.2
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+...-+|-+++|.-|+|||.|++.+....+...-..++|+.+....+.+.+..+++++|||.|+++++....++++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 44677899999999999999999999888888788899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
.++|||++.+.+++.+..|+..-+....++..+++++||.|+...+.+..+++..+++.+++.|.++||++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcccc
Q 029029 166 EIAKRLPRV 174 (200)
Q Consensus 166 ~l~~~~~~~ 174 (200)
...+++...
T Consensus 167 e~akkiyqn 175 (215)
T KOG0097|consen 167 ETAKKIYQN 175 (215)
T ss_pred HHHHHHHHh
Confidence 888777653
No 87
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=3.5e-33 Score=182.25 Aligned_cols=167 Identities=40% Similarity=0.694 Sum_probs=151.2
Q ss_pred EECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC
Q 029029 15 LLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT 93 (200)
Q Consensus 15 vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (200)
++|.+++|||.|+-++-.+.+ .....++.|+++..+.+.+++..+++++|||.|+++++.....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999877765554 3345678889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 94 NQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 94 ~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
+..+|++.+.|+.++..+....+.+.+++||+|+..++.+..++.+++++.+++||.++||++|.|++..|..|.+.+..
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999887888899999999999888999999999999999999999999999999999999999887
Q ss_pred cCCCCCCC
Q 029029 174 VQPAPNPS 181 (200)
Q Consensus 174 ~~~~~~~~ 181 (200)
..-...|.
T Consensus 162 ~~~~~~~~ 169 (192)
T KOG0083|consen 162 LKMGAPPE 169 (192)
T ss_pred hccCCCCC
Confidence 65544443
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=1.9e-30 Score=191.75 Aligned_cols=163 Identities=28% Similarity=0.400 Sum_probs=138.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc-CCcEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR-GAAAAII 88 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 88 (200)
+||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999877775 5555665556677778888889999999999998 223344566 8999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887753 3579999999999998777777787888888889999999999999999999999
Q ss_pred HHhccccC
Q 029029 168 AKRLPRVQ 175 (200)
Q Consensus 168 ~~~~~~~~ 175 (200)
++.+....
T Consensus 159 ~~~~~~~~ 166 (221)
T cd04148 159 VRQIRLRR 166 (221)
T ss_pred HHHHHhhh
Confidence 99987543
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=3.2e-30 Score=184.04 Aligned_cols=157 Identities=29% Similarity=0.523 Sum_probs=135.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+|++++|++|+|||||++++.++.+...+.++. .+.......+++..+.+++||+||++.+...+..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888877776665 4455566777888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEEecCCC
Q 029029 91 DITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFMETSAKT 156 (200)
Q Consensus 91 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (200)
|.+++++|+.+ ..|+..+... .++.|+++++||+|+.. .+.+..+++..+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999988 4688888754 35789999999999864 345677788899998888 899999999
Q ss_pred CCCHHHHHHHHHH
Q 029029 157 ATNVNDIFYEIAK 169 (200)
Q Consensus 157 ~~~i~~~~~~l~~ 169 (200)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=4.3e-30 Score=183.41 Aligned_cols=159 Identities=32% Similarity=0.525 Sum_probs=135.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||++++..+.+...+.++.+. .......+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999988877666666543 33445667888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCCC
Q 029029 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAKT 156 (200)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (200)
|..++.+|+.+. .|+..+... .++.|+++++||+|+.+. ..+..+++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 687777665 578999999999998543 24667778888888886 799999999
Q ss_pred CCCHHHHHHHHHHhc
Q 029029 157 ATNVNDIFYEIAKRL 171 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~ 171 (200)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 91
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-32 Score=182.27 Aligned_cols=171 Identities=35% Similarity=0.592 Sum_probs=153.4
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC---------CeEEEEEEEeCCCcccccc
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN---------DATVKFEIWDTAGQERYHS 74 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~ 74 (200)
++....-+|.+.+|.+|+||||++.+...+.+......+.|+++..+...++ +..+.+++|||+|+++++.
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 3445567899999999999999999999999998888889988877776653 2456799999999999999
Q ss_pred chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEec
Q 029029 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (200)
+...+++.|-+++++||+++..+|-+++.|+..+..+. ..+.-+++++||+|+.+.++++.+.+..++.++++|||++|
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 99999999999999999999999999999999988754 35566899999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhcccc
Q 029029 154 AKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~ 174 (200)
|-+|.|+++..+.|.+.+.++
T Consensus 163 A~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHH
Confidence 999999999999999988775
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.3e-29 Score=178.21 Aligned_cols=159 Identities=37% Similarity=0.637 Sum_probs=139.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
||+++|++|||||||+++++++.+.....++.+ +........++..+.+++||+||++.+......+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998777666666655 4555666667778899999999999888888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
.++++++..+..|+..+..... ...|+++++||+|+...+....+++..++...+.+++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999998888877643 689999999999998767778888999998888999999999999999999999876
Q ss_pred c
Q 029029 171 L 171 (200)
Q Consensus 171 ~ 171 (200)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.8e-29 Score=178.33 Aligned_cols=161 Identities=34% Similarity=0.572 Sum_probs=139.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++++.+.+...+.++.+. ........++..+.+.+||+||+..+...+..+++.+|++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999988877666666543 33455667788899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
|++++.++..+..|+..+.... ..++|+++|+||+|+.............+++.++++++++||++|.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887753 357999999999999765556677778888888899999999999999999999998
Q ss_pred hcc
Q 029029 170 RLP 172 (200)
Q Consensus 170 ~~~ 172 (200)
++.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=3.3e-29 Score=180.92 Aligned_cols=165 Identities=33% Similarity=0.536 Sum_probs=135.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
+.||+|+|++|+|||||++++..+.+...+.++....+ ......++....+.+||++|++.+......++..+|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 46999999999999999999997877766655554333 33556677788899999999988887777788999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccC----------CCCCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD----------ARKVTAEEAQAYAQENGL-FFMETSAKTA 157 (200)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (200)
||++++++++.+. .|+..+.... ++.|+++|+||+|+.+ .+.+..++...+++..+. .|+++||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999985 6888887653 5699999999999854 234556778888888885 7999999999
Q ss_pred CCHHHHHHHHHHhccccCC
Q 029029 158 TNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~~ 176 (200)
.|++++|+++.+.+....+
T Consensus 159 ~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 159 EGVDDVFEAATRAALLVRK 177 (187)
T ss_pred CCHHHHHHHHHHHHhcccC
Confidence 9999999999988765544
No 95
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4.4e-29 Score=179.19 Aligned_cols=165 Identities=34% Similarity=0.525 Sum_probs=140.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
.||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+++||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998877655555554333 455566777889999999999999888899999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
|.++..+++.+..|+..+.... ..+.|+++++||+|+...+....++...+++..+.+++++||+++.|++++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999988888776643 367899999999999766666777778888888899999999999999999999999
Q ss_pred hccccCC
Q 029029 170 RLPRVQP 176 (200)
Q Consensus 170 ~~~~~~~ 176 (200)
.+.....
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 9887654
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=9.1e-30 Score=180.79 Aligned_cols=155 Identities=23% Similarity=0.384 Sum_probs=123.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+++|++|+|||||+++|..+.+. .+.++.+.++. ... ...+.+++|||+|++.++..+..++.++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999866654 35566665543 222 34688999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|++++.+++++..|+..+... ...++|+++|+||+|+.+. ...+++...... ....++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999988877766543 2357899999999998642 455666665432 23468999999999999
Q ss_pred HHHHHHHH
Q 029029 162 DIFYEIAK 169 (200)
Q Consensus 162 ~~~~~l~~ 169 (200)
++|+||.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999975
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=7.2e-29 Score=177.23 Aligned_cols=160 Identities=34% Similarity=0.567 Sum_probs=132.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
+.||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 46899999999999999999998888777777765444 34566778888999999999999888888889999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCC
Q 029029 90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAK 155 (200)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (200)
||++++++++.+. .|+..+... ..+.|+++|+||+|+.+. ..+...+.+.+++..+. .++++||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999998884 687777664 357899999999998542 22345667777777765 79999999
Q ss_pred CCCCHHHHHHHHHHhc
Q 029029 156 TATNVNDIFYEIAKRL 171 (200)
Q Consensus 156 ~~~~i~~~~~~l~~~~ 171 (200)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998754
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=5e-29 Score=181.51 Aligned_cols=161 Identities=27% Similarity=0.451 Sum_probs=133.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
||+++|++|+|||||+++++++.+...+.++.+ ......+.+.+..+.+++||++|+..+...+..++..+|++|+|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999998887766655553 3444556677777899999999999888888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccC-CCCCCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLD-ARKVTAEEAQAYAQ-ENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
++++.+++.+..|+..+..... .++|+++|+||+|+.. ...+..+...+.+. ..+++++++||++|.|++++|+++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877543 5799999999999865 34455544444443 4567899999999999999999999
Q ss_pred Hhccc
Q 029029 169 KRLPR 173 (200)
Q Consensus 169 ~~~~~ 173 (200)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 98764
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2.3e-29 Score=178.97 Aligned_cols=157 Identities=21% Similarity=0.377 Sum_probs=125.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
||+++|+++||||||+++|.++.+.. +.++.+.... .++...+.+++||+||++.+...+..++..+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~----~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE----TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE----EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999775543 5566554442 233356789999999999999899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC------CcEEEecCCCCCCHHHHH
Q 029029 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENG------LFFMETSAKTATNVNDIF 164 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 164 (200)
.+++++++.+..|+..+.... ..+.|+++++||+|+.+ ....+++..++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988888876542 35689999999999854 356666666654322 257899999999999999
Q ss_pred HHHHHhccccC
Q 029029 165 YEIAKRLPRVQ 175 (200)
Q Consensus 165 ~~l~~~~~~~~ 175 (200)
+||.+.+.+..
T Consensus 154 ~~l~~~~~~~~ 164 (169)
T cd04158 154 DWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHhhcc
Confidence 99998776554
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=3.9e-30 Score=182.02 Aligned_cols=153 Identities=23% Similarity=0.339 Sum_probs=125.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
.|+++|++|+|||||++++.++.+...+.++.+... ..++.....+.+||++|++.++..+..+++++|++|+|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999998877777777776542 3345567899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH----HHHHHHHHHcCCcEEEecCCC------CCCHH
Q 029029 92 ITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA----EEAQAYAQENGLFFMETSAKT------ATNVN 161 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 161 (200)
.+++.++...+.|+..+.... .++|+++|+||.|+...+.... ..+..+++..++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999888888876543 6899999999999865543221 123445556678899998888 99999
Q ss_pred HHHHHHHH
Q 029029 162 DIFYEIAK 169 (200)
Q Consensus 162 ~~~~~l~~ 169 (200)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998875
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.4e-29 Score=180.55 Aligned_cols=159 Identities=19% Similarity=0.348 Sum_probs=124.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|+.+||||||++++..+.+. .+.++.|.+.. . ++...+.+++||+||++.++..+..++.++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999866664 35566665442 2 2344678999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-----CcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-----LFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 161 (200)
+|+|+++++++.....++..+... ...+.|+++++||+|+.+. ...+++........ +.++++||++|.|++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998887777766542 2357899999999998653 34444444332222 235689999999999
Q ss_pred HHHHHHHHhccc
Q 029029 162 DIFYEIAKRLPR 173 (200)
Q Consensus 162 ~~~~~l~~~~~~ 173 (200)
++|+||.+.+..
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 102
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=6.2e-29 Score=178.87 Aligned_cols=165 Identities=20% Similarity=0.302 Sum_probs=130.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
+.+||+++|++|||||||++++..+.+... .++.+.+........ ++....+.+|||+|++.+...+..++.++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999997776543 466665555544443 346789999999999999889999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH------cCCcEEEecCCCCCCH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE------NGLFFMETSAKTATNV 160 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i 160 (200)
+|+|.+++.++.....|+..+... ...++|+++++||+|+.+. ...++...+... .+++++++||++|.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999998898888888777653 2357899999999998542 344444444321 1246889999999999
Q ss_pred HHHHHHHHHhccccCC
Q 029029 161 NDIFYEIAKRLPRVQP 176 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~~ 176 (200)
+++|++|.+.+.+..+
T Consensus 159 ~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 159 QEGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998865443
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.5e-28 Score=173.66 Aligned_cols=157 Identities=34% Similarity=0.603 Sum_probs=130.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++|+++.+.....++.. .........++..+.+++||+||++.+......++..+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998887555555543 334455566788899999999999988888888889999999999
Q ss_pred eCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCC-----------CCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029 91 DITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDAR-----------KVTAEEAQAYAQENGL-FFMETSAKTA 157 (200)
Q Consensus 91 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (200)
|++++.++... ..|+..+.... .+.|+++|+||+|+.+.. .+..++...++..++. +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999998876 46777776653 489999999999987554 2346677888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 029029 158 TNVNDIFYEIAK 169 (200)
Q Consensus 158 ~~i~~~~~~l~~ 169 (200)
.|++++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 104
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=177.92 Aligned_cols=167 Identities=36% Similarity=0.597 Sum_probs=153.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
...||+++|.+|+|||+|..++..+.+...+.|+++ +.+.+...+++....+.|+||+|++++..+...++.++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999986 6678888888999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
||+++++.||+.+..+++.+.+.. ...+|+++|+||+|+...+.+..++.+.++..++++|+|+||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999885533 3568999999999999889999999999999999999999999999999999999
Q ss_pred HHhccccCC
Q 029029 168 AKRLPRVQP 176 (200)
Q Consensus 168 ~~~~~~~~~ 176 (200)
.+.+...+.
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 998887333
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.2e-28 Score=176.26 Aligned_cols=157 Identities=21% Similarity=0.365 Sum_probs=122.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|++|||||||++++..+.+. .+.++.+..... .. .....+++||+||++.+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999999766664 355666655432 22 24578999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|++++++++....|+..+... ...+.|+++|+||.|+.+. .+.+++...... ..+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999988888777553 2357899999999998643 233333332211 12346789999999999
Q ss_pred HHHHHHHHhc
Q 029029 162 DIFYEIAKRL 171 (200)
Q Consensus 162 ~~~~~l~~~~ 171 (200)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 106
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=6.5e-28 Score=177.83 Aligned_cols=167 Identities=30% Similarity=0.531 Sum_probs=144.5
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
+.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 55667899999999999999999988888888888899998888888878888999999999999998888888999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
++++|||++++.++..+..|+..+.... .+.|+++++||.|+.+. ....+ ...++...++.++++||++|.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887653 57899999999998643 23333 345667788899999999999999999
Q ss_pred HHHHHhcccc
Q 029029 165 YEIAKRLPRV 174 (200)
Q Consensus 165 ~~l~~~~~~~ 174 (200)
.+|++.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999988653
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.9e-29 Score=177.60 Aligned_cols=152 Identities=20% Similarity=0.376 Sum_probs=117.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|.+|||||||++++..+.+.. +.++.+.... .+. ...+.+.+||+||++++...+..+++++|++|+|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999998776653 5666665442 222 34688999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
|.+++.+++....|+..+... .....|+++++||+|+.+. ...+++..... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877766543 2346899999999998542 22333222221 123357799999999999999
Q ss_pred HHHHH
Q 029029 165 YEIAK 169 (200)
Q Consensus 165 ~~l~~ 169 (200)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99865
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.5e-28 Score=175.44 Aligned_cols=157 Identities=22% Similarity=0.324 Sum_probs=123.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.....++|+++|++|+|||||+++|.+.. ...+.++.+... .....+ .+.+.+||+||++.++..+..++..+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~-~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGED-IDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 34567999999999999999999999663 344556655332 333333 5789999999999888888899999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCC
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATN 159 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 159 (200)
+++|+|.+++.++.....|+..+... ...+.|+++|+||+|+.+. ...+++..+.+ ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 99999999999999888888776543 2367999999999998653 24455555543 2356899999999999
Q ss_pred HHHHHHHHHH
Q 029029 160 VNDIFYEIAK 169 (200)
Q Consensus 160 i~~~~~~l~~ 169 (200)
++++|+++.+
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.2e-28 Score=175.81 Aligned_cols=159 Identities=21% Similarity=0.368 Sum_probs=122.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|++|||||||++++..+.+.. +.++.+..+. . ++...+.+++||++|++.++..+..++.++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998676654 4566665443 2 2235688999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|++++++++....++..+... ...+.|+++|+||.|+.+. ...+++...... ..+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999888777766443 2356899999999998542 233333222211 12346799999999999
Q ss_pred HHHHHHHHhccc
Q 029029 162 DIFYEIAKRLPR 173 (200)
Q Consensus 162 ~~~~~l~~~~~~ 173 (200)
++|+||.+.+.+
T Consensus 168 e~~~~l~~~i~~ 179 (182)
T PTZ00133 168 EGLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.1e-27 Score=169.74 Aligned_cols=160 Identities=29% Similarity=0.420 Sum_probs=123.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|.+|+|||||+++|.++.+...+..+. ........+.+..+.+.+|||||.+.+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999888765433221 122333445667789999999999887777777889999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHHHc-C-CcEEEecCCCCCCHHHHHH
Q 029029 91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQEN-G-LFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~~~ 165 (200)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..... .+.+..++... + .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 6878777653 579999999999997654321 23333333333 2 3799999999999999999
Q ss_pred HHHHhccc
Q 029029 166 EIAKRLPR 173 (200)
Q Consensus 166 ~l~~~~~~ 173 (200)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887654
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=8.8e-28 Score=171.59 Aligned_cols=154 Identities=25% Similarity=0.374 Sum_probs=120.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
..+||+++|++|+|||||++++..+.+.. ..++.+.++.. .. .....+.+||+||++.+...+..++..+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IV--YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EE--ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999777654 45666554432 22 235789999999999998899999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVND 162 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 162 (200)
|+|.++++++.....++..+... ...+.|+++++||+|+.+. .+.++..+.. +..+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999998888887777766543 2357899999999998652 3343332222 22445789999999999999
Q ss_pred HHHHHHH
Q 029029 163 IFYEIAK 169 (200)
Q Consensus 163 ~~~~l~~ 169 (200)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999975
No 112
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=1.8e-28 Score=173.47 Aligned_cols=167 Identities=32% Similarity=0.538 Sum_probs=149.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
...+|++|||...+|||+|+-.+..+.++..+.|+.- +.+.....++ +..+.+.+|||+|+++|..++...+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4578999999999999999999999999999998884 6667778884 9999999999999999999888889999999
Q ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEe
Q 029029 87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMET 152 (200)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 152 (200)
+++|++.++++++++ .+|+.++..+. ++.|+++|++|.||.++ ..+..++...+++..| ..|+||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999997 79999998884 89999999999999743 2567788999999999 579999
Q ss_pred cCCCCCCHHHHHHHHHHhccccCC
Q 029029 153 SAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
||++..|++++|+..++......+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999998887776654
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=7.7e-28 Score=169.70 Aligned_cols=152 Identities=19% Similarity=0.288 Sum_probs=117.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+|+++|++|||||||+++|.++.. ...+.++.+..... . ......+++|||||++.+...+..++..+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999997653 44566676644322 2 234678999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHH
Q 029029 91 DITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVND 162 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 162 (200)
|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ...+...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887775532 2579999999999986532 2222222221 1234589999999999999
Q ss_pred HHHHHHH
Q 029029 163 IFYEIAK 169 (200)
Q Consensus 163 ~~~~l~~ 169 (200)
+|+||.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999865
No 114
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.3e-27 Score=172.30 Aligned_cols=147 Identities=22% Similarity=0.383 Sum_probs=124.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-----CeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-----DATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+||+++|..|+|||||++++.++.+...+.++.|.++....+.++ +..+.+++||++|++.+..++..++.++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877766666653 467899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-------------------CCCCeEEEEEeCcCccCCCCCCHH----HHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQG-------------------NPNMVMALAGNKADLLDARKVTAE----EAQAYA 142 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~~~ivv~nK~D~~~~~~~~~~----~~~~~~ 142 (200)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||.|+.+.+.+... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987631 247899999999999766544443 244567
Q ss_pred HHcCCcEEEecCCCC
Q 029029 143 QENGLFFMETSAKTA 157 (200)
Q Consensus 143 ~~~~~~~~~~Sa~~~ 157 (200)
+..+++.++.++.++
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 788999888887754
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=3.5e-28 Score=172.55 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=119.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
+|+++|++|||||||++++.++ +...+.++.|... ..+. .....+++||+||++.++..+..++.++|++|+|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLR--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEE--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 5899999999999999999955 6666677776543 2333 345789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHH------HHHHHHcC--CcEEEecCCCC-----
Q 029029 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEA------QAYAQENG--LFFMETSAKTA----- 157 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~Sa~~~----- 157 (200)
++++.+++.+..|+..+.... ..++|+++|+||.|+.+.. ...++ ..+++..+ +.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 999999999999998887643 2578999999999986543 22222 22222222 46788999998
Q ss_pred -CCHHHHHHHHHH
Q 029029 158 -TNVNDIFYEIAK 169 (200)
Q Consensus 158 -~~i~~~~~~l~~ 169 (200)
.|+++.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999974
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=3.3e-27 Score=168.60 Aligned_cols=159 Identities=26% Similarity=0.410 Sum_probs=127.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+++|+.|||||||+++|..+... ...|+.|... ..+.. .+..+.+||.+|+..++..|..++.++|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeee--CcEEEEEEeccccccccccceeeccccce
Confidence 3478999999999999999999999865443 3556665443 33444 34679999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc------CCcEEEecCCCCC
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN------GLFFMETSAKTAT 158 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~ 158 (200)
+|||+|.++++.+.+....+..+... ...++|+++++||.|+.+ ....+++....... .+.++.|||.+|.
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 99999999998888888777776664 236799999999999754 35566666554332 3358899999999
Q ss_pred CHHHHHHHHHHhc
Q 029029 159 NVNDIFYEIAKRL 171 (200)
Q Consensus 159 ~i~~~~~~l~~~~ 171 (200)
|+.+.++||.+.+
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999864
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.3e-27 Score=167.36 Aligned_cols=152 Identities=26% Similarity=0.344 Sum_probs=116.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcc------cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQF------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+|+++|++|+|||||+++|.+... ...+.++.+.... .+.. ....+++||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999985322 1222334333332 2222 36789999999999999888999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-------cCCcEEEecCCCC
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQE-------NGLFFMETSAKTA 157 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 157 (200)
+++|+|.++++++.....|+..+.... ..+.|+++++||+|+.+. ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888888887776532 367999999999998553 344445544432 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 029029 158 TNVNDIFYEIAK 169 (200)
Q Consensus 158 ~~i~~~~~~l~~ 169 (200)
.|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999975
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=4.4e-27 Score=170.22 Aligned_cols=158 Identities=22% Similarity=0.315 Sum_probs=124.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+..||+++|++|||||||++++.++.+. .+.++.+... ..+.++ ...+.+||+||+..+...+..++..+|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 456899999999999999999999976653 3444544332 333333 46799999999998888888899999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH----------------cCCcE
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQE----------------NGLFF 149 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~ 149 (200)
++|+|.++++++.....|+..+.... ..+.|+++++||+|+.. .+..++++.+... ..+.+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999999988988888887776533 35789999999999854 4556666666542 22468
Q ss_pred EEecCCCCCCHHHHHHHHHHhc
Q 029029 150 METSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
++|||++|.|++++|+||.+.+
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEeEecCCCChHHHHHHHHhhC
Confidence 9999999999999999998753
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=2.7e-27 Score=166.66 Aligned_cols=152 Identities=24% Similarity=0.405 Sum_probs=117.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
+|+++|++|+|||||++++.++.+.. ..++.+.+.. .+.. .....+.+||+||+..+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999877653 3455554332 2322 345789999999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHH------HHcCCcEEEecCCCCCCHHHHH
Q 029029 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYA------QENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
.+++.++.....|+..+.... ..+.|+++++||+|+... ...+++.... ...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999988888888887775532 257999999999998542 2233333221 1234568999999999999999
Q ss_pred HHHHH
Q 029029 165 YEIAK 169 (200)
Q Consensus 165 ~~l~~ 169 (200)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 120
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=5.5e-27 Score=158.23 Aligned_cols=163 Identities=20% Similarity=0.301 Sum_probs=131.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..++++|+++|..||||||++++|+ +.......|+.|.... +.....+.+++||.+|+...+..|+.||.++|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~-~~~~~~i~pt~gf~Ik----tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLL-GEDTDTISPTLGFQIK----TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhc-CCCccccCCccceeeE----EEEecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4669999999999999999999999 5556666777664432 2334578999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCC---CCC-HHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDAR---KVT-AEEAQAYAQENGLFFMETSAKTATNVN 161 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (200)
|+|+|++++..+++....++.+.. ....+.|+++++||.|+...- .+. ..++..+++...++++.|||.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 999999999988887666655443 334678999999999986321 111 122455557788899999999999999
Q ss_pred HHHHHHHHhcccc
Q 029029 162 DIFYEIAKRLPRV 174 (200)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (200)
+.+.||++.+.++
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998873
No 121
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=4.8e-26 Score=162.44 Aligned_cols=144 Identities=47% Similarity=0.753 Sum_probs=129.3
Q ss_pred CcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC
Q 029029 33 GQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112 (200)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 112 (200)
+.+.+.+.++.|.++....+.+++..+.+.||||+|++.+...+..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788999999988888888999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 113 NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 113 ~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
....|+++|+||+|+.+.+.+..+++..+++.++..++++||++|.|++++|++|++.+.+...
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 5678999999999997766778888888888889999999999999999999999999876443
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=5.4e-27 Score=164.85 Aligned_cols=151 Identities=23% Similarity=0.358 Sum_probs=118.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
||+++|++|||||||+++++++. .....++.+..... ..+ ....+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999776 34455555544322 222 35789999999999988899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHHHHH
Q 029029 92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+++++++.....|+..+.... ..+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888887766532 3688999999999986543 2333333322 2345799999999999999999
Q ss_pred HHHH
Q 029029 166 EIAK 169 (200)
Q Consensus 166 ~l~~ 169 (200)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1.3e-26 Score=162.97 Aligned_cols=151 Identities=24% Similarity=0.350 Sum_probs=113.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
||+++|++++|||||++++..+.+.. ..++.+.+.. . +++....+++|||||++.+...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998666543 3455444432 2 22346789999999999998899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHHHHH
Q 029029 92 ITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
.+++.++.....++..+.. ....++|+++|+||+|+.+.. ...++..... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998887776666554433 223578999999999986432 2222222211 1234699999999999999999
Q ss_pred HHHH
Q 029029 166 EIAK 169 (200)
Q Consensus 166 ~l~~ 169 (200)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 124
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=5.4e-29 Score=170.42 Aligned_cols=169 Identities=30% Similarity=0.525 Sum_probs=158.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+|++|+|..++||||+|++++.+-+...+..++|+++....+.+.+.++.+.+||++|++++......|+++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 56899999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+||..+++++|+....|++.+.... ..+|.++|-||+|+.++.++...+++.++++.+..++.+|+++..|+..+|.+|
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL 176 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL 176 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999998874 679999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCC
Q 029029 168 AKRLPRVQPA 177 (200)
Q Consensus 168 ~~~~~~~~~~ 177 (200)
++++..+..+
T Consensus 177 aeK~~q~~kq 186 (246)
T KOG4252|consen 177 AEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHH
Confidence 9887765433
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3.1e-26 Score=164.93 Aligned_cols=157 Identities=19% Similarity=0.264 Sum_probs=121.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
++.++|+++|++|+|||||++++.++.+. .+.++.+.+. ..... .++.+.+||+||+..++..+..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999976543 2334443322 22222 3478999999999998889999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH------------cCCcEEEecC
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE------------NGLFFMETSA 154 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 154 (200)
+|+|++++.++.....++..+... ...++|+++|+||+|+.. .++.+++++.... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999888887777766543 235789999999999853 3455555544321 1234899999
Q ss_pred CCCCCHHHHHHHHHHhc
Q 029029 155 KTATNVNDIFYEIAKRL 171 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~~ 171 (200)
+++.|++++++||.+++
T Consensus 168 ~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 168 VRRMGYGEGFKWLSQYI 184 (184)
T ss_pred ccCCChHHHHHHHHhhC
Confidence 99999999999998753
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=7.5e-26 Score=172.16 Aligned_cols=141 Identities=28% Similarity=0.494 Sum_probs=121.4
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-------------eEEEEEEEeCCCccccc
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-------------ATVKFEIWDTAGQERYH 73 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~ 73 (200)
....+||+|+|..|+|||||+++|.++.+...+.+++|.++....+.+++ ..+.++||||+|++.++
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34579999999999999999999999888888888998887766666542 46889999999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEeCcCccCCC---C---CCH
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN------------PNMVMALAGNKADLLDAR---K---VTA 135 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~~~ivv~nK~D~~~~~---~---~~~ 135 (200)
.++..++.++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+ . ...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999987531 258999999999996542 2 357
Q ss_pred HHHHHHHHHcCC
Q 029029 136 EEAQAYAQENGL 147 (200)
Q Consensus 136 ~~~~~~~~~~~~ 147 (200)
++++++++.+++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 889999999885
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.9e-25 Score=160.08 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=112.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCc-------ccCcccC------cceeeEEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQES------TIGAAFFSQTLAV-----NDATVKFEIWDTAGQERYH 73 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~ 73 (200)
+|+++|++++|||||+++|++.. +...+.+ ..|.+........ ++..+.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998632 1111111 2234443333222 5667889999999999998
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc---EE
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF---FM 150 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~ 150 (200)
..+..++..+|++|+|+|+++..++.....|.... ..++|+++|+||+|+.+.. .......+++..+++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88889999999999999999865555555443322 2467899999999985422 222334555556663 89
Q ss_pred EecCCCCCCHHHHHHHHHHhc
Q 029029 151 ETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999999876
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.7e-25 Score=158.75 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=107.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---------chhhhhcC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LAPMYYRG 82 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~ 82 (200)
+|+++|++|+|||||+++|.+...... +..+.+..............+++|||||...... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999997665321 1222222222223334467899999999742110 11111234
Q ss_pred CcEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 83 AAAAIIVYDITNQASF--ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
+|++++|+|++++.++ +....|+..+.... .+.|+++|+||+|+.+..... ....+....+.+++++||++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence 6899999999986543 45567777776542 478999999999986543322 244555556778999999999999
Q ss_pred HHHHHHHHHhc
Q 029029 161 NDIFYEIAKRL 171 (200)
Q Consensus 161 ~~~~~~l~~~~ 171 (200)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.7e-25 Score=158.94 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=109.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeE-EEEEEEeCCCccc----cccchhhh---hcCC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQER----YHSLAPMY---YRGA 83 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~----~~~~~~~~---~~~~ 83 (200)
+|+++|++|+|||||+++|.+.... .....+.+.......+.... ..+.+|||||... .+.....+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~--v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK--IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc--ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 6899999999999999999864431 11111122211111111122 4899999999632 22233333 3469
Q ss_pred cEEEEEEeCCCH-HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-cCCcEEEecCCCCCC
Q 029029 84 AAAIIVYDITNQ-ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATN 159 (200)
Q Consensus 84 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 159 (200)
|++++|+|.+++ .+++.+..|++.+..... .++|+++|+||+|+.+.... .+....+... .+.+++++||+++.|
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 999999999998 788888888888876532 46899999999998654432 3334444444 377899999999999
Q ss_pred HHHHHHHHHHhc
Q 029029 160 VNDIFYEIAKRL 171 (200)
Q Consensus 160 i~~~~~~l~~~~ 171 (200)
++++|+++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 130
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2e-25 Score=154.33 Aligned_cols=161 Identities=22% Similarity=0.356 Sum_probs=132.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..++.+|+++|..++||||++++|-.+..... .|+.|......... +..|++||.+|++.++..|+.|+.+.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 46789999999999999999999987666554 78887665555543 78999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-----cEEEecCCCCCCH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-----FFMETSAKTATNV 160 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i 160 (200)
|||+|+++++.+.+.++.+..+..... .+.|+++++||.|+.+. .+..++.+......+ .+..|+|.+|.|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999998877777766544 68999999999998654 455555555444433 3668999999999
Q ss_pred HHHHHHHHHhcccc
Q 029029 161 NDIFYEIAKRLPRV 174 (200)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (200)
.+.++|+.+.+...
T Consensus 167 ~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 167 YEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.7e-25 Score=156.76 Aligned_cols=152 Identities=27% Similarity=0.404 Sum_probs=118.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
.|+++|++|+|||||+++|.+..+...+.++.+..... .... ...+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999888877777776655432 2222 3789999999999999899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHHHHHH
Q 029029 92 ITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
.+++.++.....|+..+... ...++|+++++||.|+.+... ........ ....++++++|+++|.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 99998888887777766543 235789999999999865322 22222221 12335789999999999999999
Q ss_pred HHHH
Q 029029 166 EIAK 169 (200)
Q Consensus 166 ~l~~ 169 (200)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=6.6e-25 Score=156.44 Aligned_cols=157 Identities=22% Similarity=0.294 Sum_probs=116.4
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.++|+++|++|||||||++++.+.... ...++.|.+.. .+... +..+.+||++|+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3455899999999999999999999965443 34555554332 23333 4679999999998888888888999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-----CcEEEecCCCCCC
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-----LFFMETSAKTATN 159 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 159 (200)
+++|+|.++..++.....++..+... ...++|+++++||+|+.+.. ..+++........ .+++++||++|.|
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence 99999999988888877776665443 23579999999999986432 2222222211111 1367999999999
Q ss_pred HHHHHHHHHH
Q 029029 160 VNDIFYEIAK 169 (200)
Q Consensus 160 i~~~~~~l~~ 169 (200)
++++|+||++
T Consensus 163 i~~~~~~l~~ 172 (173)
T cd04155 163 LQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=1.8e-24 Score=151.22 Aligned_cols=158 Identities=30% Similarity=0.488 Sum_probs=124.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
++||+++|++|+|||||++++.+......+.++.+.+........++..+.+.+||+||+..+...+..++..++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998886666666766666666666777668999999999998888888889999999999
Q ss_pred EeCCCH-HHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 90 YDITNQ-ASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 90 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||.++.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 5665554 66666665543378999999999986543 33333334444456689999999999999999986
Q ss_pred H
Q 029029 168 A 168 (200)
Q Consensus 168 ~ 168 (200)
-
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=3.5e-25 Score=171.86 Aligned_cols=162 Identities=20% Similarity=0.114 Sum_probs=118.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCcccc----ccc---hhhhhcC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERY----HSL---APMYYRG 82 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~----~~~---~~~~~~~ 82 (200)
..|+|+|.|+||||||+++|.+.... ....+.++..+....+.. ....+++||+||.... ..+ +-..++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 46899999999999999999865422 333333444444433322 3457999999996421 112 2224567
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 83 AAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
++++++|+|++++++++.+..|..++..... .++|+++|+||+|+.+......+....++...+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999987788888889888877532 47899999999998754433333445555566788999999999999
Q ss_pred HHHHHHHHHhcccc
Q 029029 161 NDIFYEIAKRLPRV 174 (200)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (200)
++++++|.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
No 135
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=1.3e-24 Score=169.69 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=119.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-ccchh-------hh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-HSLAP-------MY 79 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~-------~~ 79 (200)
++.++|+++|.+|+|||||+|+|++..+. ..++..+++.......+...+.++.||||||.... ..+.. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 56679999999999999999999976553 23344444333222222233457899999998532 22221 23
Q ss_pred hcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEEEecCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFMETSAKT 156 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 156 (200)
+..+|++++|+|..+. +... ..|+..+... +.|.++|+||+|+.+. ...++.+.+...+ ..++++||++
T Consensus 129 l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 129 LHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 6799999999997663 4444 3445555443 4577889999998542 2344555555443 5799999999
Q ss_pred CCCHHHHHHHHHHhccccCCCCCCCCceeccCCCC
Q 029029 157 ATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGE 191 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (200)
|.|+++++++|.+.+.+ .+..+|.+.+ +++|.+
T Consensus 201 g~gv~eL~~~L~~~l~~-~~~~~~~~~~-td~~~~ 233 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI-SPWLYAEDDI-TDLPMR 233 (339)
T ss_pred ccCHHHHHHHHHHhCCC-CCCCCCCCCC-CCCCHH
Confidence 99999999999998876 5567788777 777654
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=9.8e-25 Score=159.66 Aligned_cols=157 Identities=22% Similarity=0.174 Sum_probs=110.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPM 78 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~ 78 (200)
...++|+|+|++|||||||++++++........+..+.+........++ ...+.+|||||.... .... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 4458999999999999999999997653322112222222222233332 237999999997321 1111 1
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
.+..+|++++|+|.+++.++.....|...+......++|+++|+||+|+.+.... .......+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3568999999999999887777777777776655457899999999998654321 13344566789999999999
Q ss_pred CHHHHHHHHHHhc
Q 029029 159 NVNDIFYEIAKRL 171 (200)
Q Consensus 159 ~i~~~~~~l~~~~ 171 (200)
|+++++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998764
No 137
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.4e-24 Score=165.15 Aligned_cols=170 Identities=20% Similarity=0.140 Sum_probs=114.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcCC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRGA 83 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~ 83 (200)
+|+++|++|+|||||+|+|++.... ..++..+++.............++.+|||||...... ....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~-~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS-ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe-ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6999999999999999999976542 2333333333322222222345799999999754311 123456899
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHH
Q 029029 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVND 162 (200)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 162 (200)
|++++|+|.++..+.. ..++..+.. .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999865543 333344433 3689999999999864222 22334444444444 789999999999999
Q ss_pred HHHHHHHhccccCCCCCCCCceeccCCC
Q 029029 163 IFYEIAKRLPRVQPAPNPSGMVLMDRPG 190 (200)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (200)
++++|.+.+.+. +..+|.+.+ +++|.
T Consensus 155 L~~~l~~~l~~~-~~~~~~~~~-t~~~~ 180 (270)
T TIGR00436 155 LAAFIEVHLPEG-PFRYPEDYV-TDQPD 180 (270)
T ss_pred HHHHHHHhCCCC-CCCCCCccc-CCCCH
Confidence 999999987664 456676665 55554
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=2.4e-24 Score=151.98 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=102.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCc---ccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
+.|+++|++|+|||||+++|.+.. +.....+..+.+.......... ...+++|||||++.+......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999998532 2222222222233223333332 468999999999888766666788999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHH---cCCcEEEecCCCCCC
Q 029029 88 IVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQE---NGLFFMETSAKTATN 159 (200)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 159 (200)
+|+|.++ +++.+. +..+... ...|+++++||+|+.+... ...++..+..+. .+.+++++||+++.|
T Consensus 80 ~V~d~~~~~~~~~~~~----~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREH----LEILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHH----HHHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 333322 2222222 1248999999999865321 112333444444 467899999999999
Q ss_pred HHHHHHHHHH
Q 029029 160 VNDIFYEIAK 169 (200)
Q Consensus 160 i~~~~~~l~~ 169 (200)
++++++++.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=155.28 Aligned_cols=167 Identities=39% Similarity=0.570 Sum_probs=136.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
..+||+++|+.|+|||||+++|..+.+...+.++.+..+...........+.+.+|||+|+++++..+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999888888888888777777777666668899999999999999999999999999999
Q ss_pred EEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHc---CCcEEEe
Q 029029 89 VYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQEN---GLFFMET 152 (200)
Q Consensus 89 v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 152 (200)
++|..... +++....|+..+......+.|+++++||+|+.... .............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999844 45556889999888755679999999999997653 22333333332222 3348999
Q ss_pred cCC--CCCCHHHHHHHHHHhccccC
Q 029029 153 SAK--TATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 153 Sa~--~~~~i~~~~~~l~~~~~~~~ 175 (200)
|++ ++.++.++|..+.+.+....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999886543
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.6e-23 Score=145.07 Aligned_cols=154 Identities=47% Similarity=0.790 Sum_probs=121.3
Q ss_pred EECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC
Q 029029 15 LLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT 93 (200)
Q Consensus 15 vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (200)
++|++|+|||||++++.+... .....++. ................+.+||+||...+...+..++..+|++++|+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999997766 34444444 6666667777777899999999999888777788899999999999999
Q ss_pred CHHHHHHHHHHH-HHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH-HHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 94 NQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDARKVTAEE-AQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 94 ~~~s~~~~~~~~-~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
++.++.....|+ .........++|+++++||+|+.......... ..........+++++|+.++.|+++++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 998888887763 33333445789999999999987654433322 34445566789999999999999999999853
No 141
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-23 Score=139.03 Aligned_cols=169 Identities=22% Similarity=0.345 Sum_probs=142.7
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccC--cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-HSLAPMYYRGAA 84 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d 84 (200)
.+..||+++|..++|||++++.|+.+.... ...+++...+....-+.++....+.++||.|.... ..+-.+|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 457899999999999999999999887754 34455544444444444566678999999997766 677888999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI 163 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (200)
++++||+..+++||+.+..+...|.+..+ ..+|++|.+||+|+.+++.++.+.+..|++...++.+++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999998877777777543 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCC
Q 029029 164 FYEIAKRLPRVQP 176 (200)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (200)
|..++.++...+.
T Consensus 167 f~~l~~rl~~pqs 179 (198)
T KOG3883|consen 167 FTYLASRLHQPQS 179 (198)
T ss_pred HHHHHHhccCCcc
Confidence 9999988766544
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.7e-24 Score=149.58 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=97.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhhhcCCcEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-----RYHSLAPMYYRGAAAA 86 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 86 (200)
||+++|++|+|||||+++|.+.... +.++.+.++ .-.+|||||.. .+.... ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------------NDGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------------cCeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999999866532 222222111 12689999973 233332 247899999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFY 165 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 165 (200)
|+|+|.+++.++.. ..|.... ..|+++|+||+|+.+ .....+...++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999877644 2343321 248999999999865 33455667777777776 799999999999999999
Q ss_pred HHH
Q 029029 166 EIA 168 (200)
Q Consensus 166 ~l~ 168 (200)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.6e-24 Score=155.48 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=112.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh--CcccCcc------------cCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK--GQFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 76 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 76 (200)
.+|+++|.+++|||||+++|+. +.+.... ..+.|.+.......++.....+++|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999996 3433322 1234555555555666667899999999999999899
Q ss_pred hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHHHHHH-------HcCCc
Q 029029 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQ-------ENGLF 148 (200)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 148 (200)
..++..+|++++|+|.++. .+.....++..... .++|+++++||+|+.+.+. ...+++..+.+ ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999999873 22333334444333 3688999999999864322 11233444432 23678
Q ss_pred EEEecCCCCCCHHHH------HHHHHHhccccCC
Q 029029 149 FMETSAKTATNVNDI------FYEIAKRLPRVQP 176 (200)
Q Consensus 149 ~~~~Sa~~~~~i~~~------~~~l~~~~~~~~~ 176 (200)
++++||++|.|+.++ +++|.+.+...-|
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 999999999777443 4455555554433
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=157.60 Aligned_cols=156 Identities=23% Similarity=0.247 Sum_probs=105.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccch
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSLA 76 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~ 76 (200)
...++|+++|++|+|||||+++|.+..+... ...+++......... .+++||||| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVG--KRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4578999999999999999999997665432 333555544444332 599999999 34455544
Q ss_pred hhhhc----CCcEEEEEEeCCCHHHH----H------HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH
Q 029029 77 PMYYR----GAAAAIIVYDITNQASF----E------RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA 142 (200)
Q Consensus 77 ~~~~~----~~d~~i~v~d~~~~~s~----~------~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~ 142 (200)
..++. .++++++|+|.+..... . .....+..+. ..++|+++|+||+|+.+.. .+...++.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 44443 45788889988642111 0 0011122222 2478999999999986432 33445555
Q ss_pred HHcCC---------cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 143 QENGL---------FFMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 143 ~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
+..++ +++++||++| |+++++++|.+.+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 55554 4799999999 999999999998766543
No 145
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2e-24 Score=149.33 Aligned_cols=148 Identities=19% Similarity=0.217 Sum_probs=105.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--cC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY--RG 82 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~ 82 (200)
++|+++|.|++|||||+|+|++... .....+|++.......+...+..+.++|+||...+.. ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999997663 3455566666666555543447899999999543322 222233 68
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 162 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (200)
.|++|+|+|.++.+. -......+... ++|+++++||+|......+.. +...+++..+++++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r---~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHH---HHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHH---HHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999987532 22333444443 689999999999876555443 36777888999999999999999999
Q ss_pred HHHHH
Q 029029 163 IFYEI 167 (200)
Q Consensus 163 ~~~~l 167 (200)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99865
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=3.8e-23 Score=145.05 Aligned_cols=148 Identities=17% Similarity=0.147 Sum_probs=106.4
Q ss_pred EECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhhhc--CCcEE
Q 029029 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYYR--GAAAA 86 (200)
Q Consensus 15 vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~--~~d~~ 86 (200)
|+|.+|+|||||++++.+........+..+.+.....+..++ ..+.+|||||+..+... ...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999997654333333333333334444443 57999999998766542 444554 89999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
++|+|.++++.. ..++..+.. .++|+++++||+|+.+...+..+ ...+....+.+++++||.++.|+++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999886442 233333333 36899999999999765443333 45667777899999999999999999999
Q ss_pred HHHhc
Q 029029 167 IAKRL 171 (200)
Q Consensus 167 l~~~~ 171 (200)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98864
No 147
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=2.2e-23 Score=147.78 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=105.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
.|+|+|++|+|||||+++|..+.+.....+....+......... +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999776654322222222212222222 24678999999999888888888889999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH-HHHHHHHH------HcCCcEEEecCCCCCCHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA-EEAQAYAQ------ENGLFFMETSAKTATNVNDI 163 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~ 163 (200)
|.++..... ....+..+.. .++|+++|+||+|+........ .....+.. ...++++++|+++|.|++++
T Consensus 82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998743211 1122222322 4689999999999864321111 11111111 12357999999999999999
Q ss_pred HHHHHHhcc
Q 029029 164 FYEIAKRLP 172 (200)
Q Consensus 164 ~~~l~~~~~ 172 (200)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999988654
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=6.5e-23 Score=160.43 Aligned_cols=154 Identities=23% Similarity=0.198 Sum_probs=108.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMY 79 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 79 (200)
..++|+++|.+|+|||||+|+|++........+..+.+.....+.+++ +..+.+|||+|..+ +.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 348999999999999999999997654322222222333344444432 35799999999721 22211 24
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (200)
+.++|++++|+|.+++.+++....|...+......++|+++|+||+|+..... .... .....+++++||++|.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCCC
Confidence 67899999999999988777776666666655445789999999999864321 1111 12234689999999999
Q ss_pred HHHHHHHHHHh
Q 029029 160 VNDIFYEIAKR 170 (200)
Q Consensus 160 i~~~~~~l~~~ 170 (200)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 149
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=6.6e-23 Score=159.09 Aligned_cols=158 Identities=22% Similarity=0.169 Sum_probs=110.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCccccc----cchhh---hhcC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYH----SLAPM---YYRG 82 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~----~~~~~---~~~~ 82 (200)
..|+|+|.++||||||+++|.+.... ....+.++..+....+.. ....+++||+||..... .+... .+..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 57899999999999999999965432 112222222222222222 23689999999974221 22223 3457
Q ss_pred CcEEEEEEeCCCH---HHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029 83 AAAAIIVYDITNQ---ASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 157 (200)
Q Consensus 83 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (200)
++++++|+|+++. ++++.+..|.+++.... ...+|+++|+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 56777777777776543 24789999999999865432 233345555566788999999999
Q ss_pred CCHHHHHHHHHHhc
Q 029029 158 TNVNDIFYEIAKRL 171 (200)
Q Consensus 158 ~~i~~~~~~l~~~~ 171 (200)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.8e-23 Score=149.26 Aligned_cols=155 Identities=22% Similarity=0.180 Sum_probs=105.5
Q ss_pred EECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccc----cccch---hhhhcCCcEE
Q 029029 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQER----YHSLA---PMYYRGAAAA 86 (200)
Q Consensus 15 vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~---~~~~~~~d~~ 86 (200)
++|++|||||||+++|.+.... .....+++.......+... ...+.+|||||... .+... ...+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK--VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc--ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999976541 1112222222222222222 56789999999632 12222 2346789999
Q ss_pred EEEEeCCCH------HHHHHHHHHHHHHHHhCC-------CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEec
Q 029029 87 IIVYDITNQ------ASFERAKKWVQELQAQGN-------PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 87 i~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (200)
++|+|..++ .+++....|...+..... .++|+++|+||+|+..................+.+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 467777777776655432 4789999999999865443333222334444567899999
Q ss_pred CCCCCCHHHHHHHHHHhc
Q 029029 154 AKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~ 171 (200)
|+++.|++++++++.+.+
T Consensus 159 a~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 159 AKTEEGLDELIRAIYELL 176 (176)
T ss_pred hhhhcCHHHHHHHHHhhC
Confidence 999999999999998753
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=6.2e-23 Score=143.64 Aligned_cols=147 Identities=19% Similarity=0.168 Sum_probs=103.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhcC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYRG 82 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 82 (200)
++|+++|++|+|||||++++++..... .....+++..............+.+|||||....... ....+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 589999999999999999999765321 1222233322222222223467899999997654322 2235678
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 162 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (200)
+|++++|+|.+++.+......+.. ..+.|+++++||+|+.+.... .....+.+++++||+++.|+++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHH
Confidence 999999999998766655433322 357899999999998754432 3345567899999999999999
Q ss_pred HHHHHHHhc
Q 029029 163 IFYEIAKRL 171 (200)
Q Consensus 163 ~~~~l~~~~ 171 (200)
++.+|.+.+
T Consensus 148 l~~~l~~~~ 156 (157)
T cd04164 148 LKEALLELA 156 (157)
T ss_pred HHHHHHHhh
Confidence 999998764
No 152
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=4.6e-23 Score=153.15 Aligned_cols=179 Identities=19% Similarity=0.159 Sum_probs=129.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APM 78 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~ 78 (200)
..+...|+++|.|++|||||+|+|+ +...+..++..+++......-+...+.++.|+||||....... ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~-G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALV-GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHh-cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 4567789999999999999999999 5555667777777777766666666889999999996543222 223
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTA 157 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (200)
.+..+|+++||+|..+...- ..+..++.+.. .+.|+++++||+|..............+...... .++++||.+|
T Consensus 82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 46789999999999874221 11223344433 4679999999999876544222333333333333 6899999999
Q ss_pred CCHHHHHHHHHHhccccCCCCCCCCceeccCCCCC
Q 029029 158 TNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGER 192 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (200)
.|++.+.+.+...+.+... ++|.+.+ +++|.+.
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~-~yp~d~i-tD~~~rf 190 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPW-YYPEDQI-TDRPERF 190 (298)
T ss_pred CCHHHHHHHHHHhCCCCCC-cCChhhc-cCChHHH
Confidence 9999999999998877655 7777777 7777654
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=9.7e-23 Score=136.62 Aligned_cols=114 Identities=32% Similarity=0.632 Sum_probs=90.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCccc--CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
||+|+|++|||||||+++|.+.... ....+..+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 22334445556666777778877899999999998888888889999999999
Q ss_pred EeCCCHHHHHHHHH---HHHHHHHhCCCCCeEEEEEeCcC
Q 029029 90 YDITNQASFERAKK---WVQELQAQGNPNMVMALAGNKAD 126 (200)
Q Consensus 90 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~~~ivv~nK~D 126 (200)
||.+++.+++.+.. |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 99999999988754 55566554 35699999999998
No 154
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=1.8e-22 Score=155.34 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=115.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc--------cchhhh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMY 79 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~ 79 (200)
.+...|+|+|++|||||||+|+|++.... ..++..+++.............++.+|||||..... ......
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 45678999999999999999999965542 222333333322222222234789999999975432 122335
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTAT 158 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 158 (200)
+..+|++++|+|.+++... .....+..+. ..+.|+++|+||+|+.............+.+..+ ..++++||+++.
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 6789999999999883211 1122223333 2468999999999986432223334445544444 579999999999
Q ss_pred CHHHHHHHHHHhccccCCCCCCCCceeccCCC
Q 029029 159 NVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPG 190 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (200)
|+++++++|.+.+.+.. ..+|.+.+ ++.+.
T Consensus 158 gv~~L~~~L~~~l~~~~-~~y~~~~~-td~~~ 187 (292)
T PRK00089 158 NVDELLDVIAKYLPEGP-PYYPEDQI-TDRPE 187 (292)
T ss_pred CHHHHHHHHHHhCCCCC-CCCCCCCC-CCCCH
Confidence 99999999999887654 46666554 44443
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=9.3e-23 Score=142.81 Aligned_cols=148 Identities=20% Similarity=0.153 Sum_probs=99.2
Q ss_pred EEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcCCcE
Q 029029 14 VLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRGAAA 85 (200)
Q Consensus 14 ~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~ 85 (200)
+++|.+|+|||||+++|++.... ......+++...........+..+.+|||||...... .....+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 58999999999999999965421 1112222222222222223346799999999876443 33346788999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIF 164 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~ 164 (200)
+++|+|..++.+.... .....+.. .+.|+++|+||+|+.+.... .......+. +++++|++++.|++++|
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHH
Confidence 9999999875433322 22222322 35899999999998654322 233344555 78999999999999999
Q ss_pred HHHHHhc
Q 029029 165 YEIAKRL 171 (200)
Q Consensus 165 ~~l~~~~ 171 (200)
+++.+.+
T Consensus 151 ~~l~~~~ 157 (157)
T cd01894 151 DAILELL 157 (157)
T ss_pred HHHHhhC
Confidence 9998764
No 156
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.5e-22 Score=160.11 Aligned_cols=174 Identities=18% Similarity=0.131 Sum_probs=121.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccccc-------cchhhhhcCC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYH-------SLAPMYYRGA 83 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 83 (200)
.|+|+|.||||||||+|+|++... ...+.++++..+....+... ...+.++||||..... ...-..+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 799999999999999999996553 34444555555554444332 3469999999975321 1112246789
Q ss_pred cEEEEEEeCC---CHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEEEecCCC
Q 029029 84 AAAIIVYDIT---NQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFMETSAKT 156 (200)
Q Consensus 84 d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 156 (200)
|++++|+|++ ..+.++....|++.+..... ..+|+++|+||+|+.....+ .+.+..+.+..+ .+++.+||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999988 44566666777777766432 46899999999998653322 233444444434 4689999999
Q ss_pred CCCHHHHHHHHHHhccccCCCCCCCCceeccCCC
Q 029029 157 ATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPG 190 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (200)
+.++++++++|.+.+.+. +..+|.+.. ++++.
T Consensus 318 g~GIdeLl~~I~~~L~~~-~~~~~~~~~-td~~~ 349 (390)
T PRK12298 318 GLGVKELCWDLMTFIEEN-PREEAEEAE-APEKV 349 (390)
T ss_pred CcCHHHHHHHHHHHhhhC-cccCCcccc-cCccH
Confidence 999999999999988765 455666555 44443
No 157
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.5e-22 Score=131.76 Aligned_cols=159 Identities=23% Similarity=0.393 Sum_probs=126.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.++++|+.+|..++||||++..|..+.. ....|+.|.... .+...+..|.+||.+|++..+.+|.+|+....++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve----tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE----EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 4589999999999999999999985543 334456554433 33446789999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-----cEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-----FFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~ 161 (200)
||+|+.+++..++.+..+..+... ...+.|+++.+||.|+... ..+.++..+.+...+ -+.+++|.+|.++.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 999999988888876666555443 3367899999999998654 567777777655444 36689999999999
Q ss_pred HHHHHHHHhccc
Q 029029 162 DIFYEIAKRLPR 173 (200)
Q Consensus 162 ~~~~~l~~~~~~ 173 (200)
+.|.||.+.+.+
T Consensus 168 eglswlsnn~~~ 179 (180)
T KOG0071|consen 168 EGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHhhccC
Confidence 999999887643
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.8e-22 Score=145.60 Aligned_cols=157 Identities=19% Similarity=0.185 Sum_probs=110.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCc--------------ceeeEEEEEEEECCeEEEEEEEeCCCccccccchh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--------------IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP 77 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 77 (200)
+|+|+|.+|+|||||+++|++.......... .+.+..............+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999976654332111 11222222222333356899999999988888888
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHHH-----------
Q 029029 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQE----------- 144 (200)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~----------- 144 (200)
.++..+|++++|+|++++.... ...++..+.. .+.|+++++||+|+....... ...+++..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 8899999999999998764332 2333443333 578999999999987532211 2223333332
Q ss_pred ---cCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 145 ---NGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 145 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
...+++++||++|.|+++++.+|.+.+.
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3467999999999999999999999874
No 159
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=2.1e-22 Score=161.75 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=110.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccccccc--------hh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSL--------AP 77 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 77 (200)
...++|+++|++|+|||||+|+|++... ....+..|++. ....+.++ +..+.+|||||....... ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 3568999999999999999999996542 11223334333 33444444 456899999998654332 23
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 157 (200)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (200)
.++..+|++++|+|.+++.+++.. |+..+.. .++|+++|+||+|+.+. ....+++..+.+++.+||++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence 467899999999999988776654 6655533 46899999999998543 12344566778899999998
Q ss_pred CCHHHHHHHHHHhccccC
Q 029029 158 TNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~ 175 (200)
.|++++|+.+.+.+....
T Consensus 346 ~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFY 363 (442)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999999887653
No 160
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=8.1e-22 Score=156.78 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=113.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccc----cccchhhh---hcCC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQER----YHSLAPMY---YRGA 83 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~~~---~~~~ 83 (200)
.|+|+|.++||||||+++|++.... ....+.++..+....+... ...+.+||+||... ...+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 7999999999999999999965532 2233334444443333222 46799999999642 11222233 4569
Q ss_pred cEEEEEEeCCCH---HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 84 AAAIIVYDITNQ---ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 84 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
+++++|+|+++. ++++....|...+..... .++|+++|+||+|+.+ ..+.+..+.+..+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999854 566777777777766532 4789999999999743 2334556666666789999999999
Q ss_pred CHHHHHHHHHHhccccC
Q 029029 159 NVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~~~ 175 (200)
|+++++++|.+.+....
T Consensus 314 GI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 314 GLDELLYAVAELLEETP 330 (424)
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999998886654
No 161
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.8e-22 Score=145.36 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=101.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC----cccCc---c--cCcceeeEEEEEEE----------ECCeEEEEEEEeCCCccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG----QFIEF---Q--ESTIGAAFFSQTLA----------VNDATVKFEIWDTAGQER 71 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~----~~~~~---~--~~~~~~~~~~~~~~----------~~~~~~~~~i~D~~G~~~ 71 (200)
++|+++|+.++|||||+++|+.. .+... . ..+.+.......+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 11111 1 11222222222222 123367899999999875
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHHHHHHHH------
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEEAQAYAQ------ 143 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~------ 143 (200)
+..........+|++++|+|.++.........+. +... .+.|+++++||+|+...... ..++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4333334456789999999998743322222221 1222 25699999999998643221 1222222211
Q ss_pred -HcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 144 -ENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 144 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
..+++++++||++|.|++++++++.+++...
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1357899999999999999999999988653
No 162
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=3.2e-22 Score=146.10 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=102.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCccc---CcccCc--ceeeEEEEEEE-----------------------EC--C----
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFI---EFQEST--IGAAFFSQTLA-----------------------VN--D---- 56 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~---~~~~~~--~~~~~~~~~~~-----------------------~~--~---- 56 (200)
++|+++|+.|+|||||+..|.+.... ...... ....+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 57999999999999999999743111 111111 11111110000 00 0
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--C
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--T 134 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~ 134 (200)
....+.||||||++.+.......+..+|++++|+|..++.........+..+... ...|+++++||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267999999999888777777788899999999998742111222223333322 22478999999998653211 1
Q ss_pred HHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 135 AEEAQAYAQEN---GLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 135 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
.+.++.++... +.+++++||++|.|+++++++|.+.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12333433332 5689999999999999999999987755
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2.6e-22 Score=162.03 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=106.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceee--EEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERYHSL--------APM 78 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~ 78 (200)
..++|+++|++|+|||||+|+|++.... ...+..+++ .....+..+ +..+.+|||||....... ...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA-IVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 3589999999999999999999965431 122233333 333334443 457899999998654332 223
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
++..+|++++|+|.+++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~ 356 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGE 356 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCC
Confidence 5788999999999998876665433332 3568999999999986533221 3445679999999999
Q ss_pred CHHHHHHHHHHhccc
Q 029029 159 NVNDIFYEIAKRLPR 173 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~ 173 (200)
|+++++++|.+.+..
T Consensus 357 GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 357 GIDELREAIKELAFG 371 (449)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998865
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.8e-22 Score=161.85 Aligned_cols=155 Identities=25% Similarity=0.228 Sum_probs=106.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYY 80 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 80 (200)
...+|+|+|.+|+|||||+++|++... ....+..|++...........+..+.+|||||.+. +......++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 346899999999999999999996543 23344555554443333322345689999999752 223345568
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCC
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATN 159 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 159 (200)
..+|++|+|+|.++..++.. ..+...+.. .++|+++|+||+|+.... .+....+ ..++ ..+++||++|.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence 89999999999998654432 233333333 468999999999985421 1112222 2333 357999999999
Q ss_pred HHHHHHHHHHhccc
Q 029029 160 VNDIFYEIAKRLPR 173 (200)
Q Consensus 160 i~~~~~~l~~~~~~ 173 (200)
++++|+++.+.+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999998866
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=3.4e-22 Score=140.35 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=99.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc----cchhhhhcCCcEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH----SLAPMYYRGAAAAI 87 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~d~~i 87 (200)
+|+++|++|+|||||+++|.+.. .. ...+.+ ..+... .+|||||..... ......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987432 11 111111 112221 269999973222 11123468999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC--cEEEecCCCCCCHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL--FFMETSAKTATNVNDIFY 165 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~ 165 (200)
+|+|.++.+++ +..|+..+ ..+.|+++++||+|+.+ ...+.+..+++..+. +++++||+++.|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999987654 22343332 24678999999999854 345566777777775 899999999999999999
Q ss_pred HHHHhccccCC
Q 029029 166 EIAKRLPRVQP 176 (200)
Q Consensus 166 ~l~~~~~~~~~ 176 (200)
++.+.+.....
T Consensus 141 ~l~~~~~~~~~ 151 (158)
T PRK15467 141 YLASLTKQEEA 151 (158)
T ss_pred HHHHhchhhhc
Confidence 99988865543
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1.6e-21 Score=161.75 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=116.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcc-------cCccc------CcceeeEEEEEEEE-----CCeEEEEEEEeCCCcccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQF-------IEFQE------STIGAAFFSQTLAV-----NDATVKFEIWDTAGQERY 72 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~-------~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~ 72 (200)
.+|+++|+.++|||||+++|+...- ...+. ...|.++......+ ++..+.+++|||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 5899999999999999999986421 11111 12355554443333 456689999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC---cE
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL---FF 149 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 149 (200)
...+..++..+|++|+|+|.++..+......|..... .+.|+++|+||+|+.+.. ......++.+..++ .+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~v 157 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEA 157 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceE
Confidence 8888999999999999999998655555555544332 367899999999985421 12223445555565 38
Q ss_pred EEecCCCCCCHHHHHHHHHHhccccC
Q 029029 150 METSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+++||++|.|++++|++|.+.+....
T Consensus 158 i~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 99999999999999999999886543
No 167
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=2e-21 Score=136.99 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=104.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYY 80 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 80 (200)
...+|+++|++|+|||||++++++..... .......+..............+.+|||||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEe-ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 36789999999999999999999654321 111112222222222334457899999999654322 223357
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCC
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATN 159 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 159 (200)
..+|++++|+|.+++.+. ....+...+... +.|+++++||+|+........+....+.... ..+++++|++++.+
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 889999999999987221 112233333332 5789999999998743333333344444444 36899999999999
Q ss_pred HHHHHHHHHHhc
Q 029029 160 VNDIFYEIAKRL 171 (200)
Q Consensus 160 i~~~~~~l~~~~ 171 (200)
+++++++|.+.+
T Consensus 157 ~~~l~~~l~~~~ 168 (168)
T cd04163 157 VDELLEEIVKYL 168 (168)
T ss_pred hHHHHHHHHhhC
Confidence 999999998753
No 168
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=1.8e-21 Score=141.48 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=106.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc----------ccccchh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLAP 77 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 77 (200)
....+|+++|++|+|||||+++|+++.+.....++.+.+........ ...+.+|||||.. .+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45789999999999999999999976655556666665543333322 3679999999942 2233334
Q ss_pred hhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHHHHHHHHHcCCcEEEe
Q 029029 78 MYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEEAQAYAQENGLFFMET 152 (200)
Q Consensus 78 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (200)
.++.. .+++++++|.+++...... .+...+.. .+.|+++++||+|+.+..+. ..+.+.........+++++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 44443 4678888988765332221 11122222 46789999999998653221 1223444444446789999
Q ss_pred cCCCCCCHHHHHHHHHHhccc
Q 029029 153 SAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
||+++.|++++++.|.+.+.+
T Consensus 175 Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 175 SSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EcCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999887654
No 169
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=1.9e-21 Score=155.44 Aligned_cols=157 Identities=22% Similarity=0.197 Sum_probs=106.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc--ccchhh------hhcC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--HSLAPM------YYRG 82 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~~------~~~~ 82 (200)
.+|+++|.+|+|||||+|+|++........+..+.+.....+...+ ...+.+|||+|..+. ...+.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999997554322222222333333344433 236889999997431 122222 3578
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHH
Q 029029 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVN 161 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 161 (200)
+|++++|+|.+++.++..+..|...+......++|+++|+||+|+..... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999987777765555555444445789999999999864211 1111 1123455 5889999999999
Q ss_pred HHHHHHHHhccc
Q 029029 162 DIFYEIAKRLPR 173 (200)
Q Consensus 162 ~~~~~l~~~~~~ 173 (200)
+++++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999998854
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=3.1e-21 Score=137.03 Aligned_cols=154 Identities=20% Similarity=0.198 Sum_probs=100.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEE--EEEEECCeEEEEEEEeCCCcccccc-----------ch
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERYHS-----------LA 76 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~ 76 (200)
.++|+++|.+|+|||||+++|++...... ....+++... .....+ +..+.+|||||...... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHH
Confidence 57999999999999999999997543211 1122222222 223333 34588999999653311 01
Q ss_pred hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-HHc----CCcEEE
Q 029029 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA-QEN----GLFFME 151 (200)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~ 151 (200)
...+..+|++++|+|.+++.+.... .++..+.. .+.|+++++||+|+.+......+...... +.. ..++++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 2245789999999999987654332 22333322 35899999999998764322222222222 222 367999
Q ss_pred ecCCCCCCHHHHHHHHHHh
Q 029029 152 TSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~ 170 (200)
+||+++.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 171
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1e-21 Score=158.16 Aligned_cols=164 Identities=20% Similarity=0.174 Sum_probs=111.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc----ccc---hhhhhcC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSL---APMYYRG 82 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~ 82 (200)
-..|+|+|.++||||||+++|.+.... ....++++..+....+......|++||+||.... ..+ .-..+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 357999999999999999999965432 2333444554555444444568999999996321 111 1224578
Q ss_pred CcEEEEEEeCCCH----HHHHHHHHHHHHHHHhC-----------CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC
Q 029029 83 AAAAIIVYDITNQ----ASFERAKKWVQELQAQG-----------NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL 147 (200)
Q Consensus 83 ~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 147 (200)
+|++|+|+|.++. +.+..+..+..++..+. ..++|+++|+||+|+.+.... .+.........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 9999999999752 34444444444443321 246899999999998643322 2223333445578
Q ss_pred cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 148 FFMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 148 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
+++++||+++.|+++++.+|.+.+.....
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999998877543
No 172
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=6.4e-22 Score=161.11 Aligned_cols=159 Identities=23% Similarity=0.257 Sum_probs=106.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccc----------cccch
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQER----------YHSLA 76 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~ 76 (200)
..++|+++|.+|+|||||+++|++.... ...+..|++. ....+..++ ..+.+|||||... +....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence 4689999999999999999999976542 2233333333 333444444 4578999999532 11111
Q ss_pred -hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHH-HHHHcCCcEEEe
Q 029029 77 -PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQA-YAQENGLFFMET 152 (200)
Q Consensus 77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 152 (200)
..++..+|++|+|+|++++.++..+. ++..+.. .++|+++|+||+|+.+..... ..++.. +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23468999999999999877665543 3444433 468999999999986432110 111211 122234689999
Q ss_pred cCCCCCCHHHHHHHHHHhcccc
Q 029029 153 SAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
||++|.|++++|+.+.+.+...
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998876543
No 173
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.88 E-value=3.6e-22 Score=132.69 Aligned_cols=156 Identities=25% Similarity=0.398 Sum_probs=127.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
.++.+.++|..+||||||++.+..+.+.....|+.|... ..+......+.+||.||+..++..|..|.+.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 468899999999999999999998888888888887544 3344567889999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--------CcEEEecCCCCCC
Q 029029 89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--------LFFMETSAKTATN 159 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~ 159 (200)
|+|..+++.++..+..+..+... .-.++|++|.+||.|+.+. .... .+..+.| +-.|.+|+++..|
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999999888887777666554 3478999999999998653 2322 2233333 3478899999999
Q ss_pred HHHHHHHHHHhccc
Q 029029 160 VNDIFYEIAKRLPR 173 (200)
Q Consensus 160 i~~~~~~l~~~~~~ 173 (200)
++-+..||+++-..
T Consensus 170 id~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 170 IDITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987543
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=4.4e-21 Score=155.07 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=106.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch-----------
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----------- 76 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 76 (200)
...++|+++|.+++|||||+++|++.... ...+..+++.......+...+..+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34689999999999999999999965432 122334444433333332233479999999975443221
Q ss_pred hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-HH----cCCcEEE
Q 029029 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA-QE----NGLFFME 151 (200)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~~ 151 (200)
..++..+|++|+|+|.+++.+.... .++..+.. .+.|+++|+||+|+.+.. ...+...... .. ..+++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEE
Confidence 2357899999999999987555443 23333333 468999999999987211 1122222222 11 2468999
Q ss_pred ecCCCCCCHHHHHHHHHHhccc
Q 029029 152 TSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
+||++|.|++++|+++.+.+..
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999886654
No 175
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.87 E-value=2.9e-21 Score=129.59 Aligned_cols=167 Identities=25% Similarity=0.494 Sum_probs=144.7
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.+.-.+||.++|++..|||||+-...++.+.+.+..+.|+.+..+++.+.+....+.+||.+|++++....+..-.++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 45668999999999999999999999888888888899999999999999999999999999999999888888899999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-----CCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-----VTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
++++||.+.+.+++.+.+|+..-+..+...+|+ +|++|.|.--.-. .-...++.+++..+.++|.+|+.++.|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 999999999999999999999998887666665 6899999642211 1123478888899999999999999999
Q ss_pred HHHHHHHHHhccc
Q 029029 161 NDIFYEIAKRLPR 173 (200)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (200)
+.+|..+..++-.
T Consensus 175 ~KIFK~vlAklFn 187 (205)
T KOG1673|consen 175 QKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHHhC
Confidence 9999977766543
No 176
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=1.8e-20 Score=154.91 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=107.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+..++ ...+.||||||++.+...+...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 4678999999999999999999987665443322222222223333322 227999999999999988888899999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC---------CcEEEecCCCCC
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG---------LFFMETSAKTAT 158 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 158 (200)
+|+|.++.... +..+.+.... ..++|+++++||+|+.+. ..+.........+ .+++++||++|.
T Consensus 164 LVVda~dgv~~-qT~e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMP-QTIEAISHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCH-hHHHHHHHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99998863211 1112222222 246899999999998542 3333433333322 469999999999
Q ss_pred CHHHHHHHHHHh
Q 029029 159 NVNDIFYEIAKR 170 (200)
Q Consensus 159 ~i~~~~~~l~~~ 170 (200)
|++++++++...
T Consensus 237 GI~eLl~~I~~~ 248 (587)
T TIGR00487 237 GIDELLDMILLQ 248 (587)
T ss_pred ChHHHHHhhhhh
Confidence 999999998753
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=4.8e-21 Score=137.36 Aligned_cols=148 Identities=17% Similarity=0.216 Sum_probs=98.6
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccch
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLA 76 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~ 76 (200)
.....+|+++|++|+|||||+++|++..+.....+..+.+........++ .+.+|||||... +....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 36688999999999999999999997654444555665555444333332 699999999532 22223
Q ss_pred hhhhc---CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHHcC--CcE
Q 029029 77 PMYYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQENG--LFF 149 (200)
Q Consensus 77 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~ 149 (200)
..++. .++++++|+|.+++.+.... .++..+.. .++|+++++||+|+..... ...+++++.+...+ .++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 33444 35899999999875443332 22233322 3689999999999864321 12344555555543 479
Q ss_pred EEecCCCCCCHH
Q 029029 150 METSAKTATNVN 161 (200)
Q Consensus 150 ~~~Sa~~~~~i~ 161 (200)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 178
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=2.7e-20 Score=157.92 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=120.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc----------hhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------APM 78 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 78 (200)
+.++|+++|++|||||||+|+|++... ......|++...+...+...+.++.+|||||..++... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 357899999999999999999986543 45566888888887777777889999999998765432 112
Q ss_pred hh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029 79 YY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 156 (200)
Q Consensus 79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (200)
++ ..+|++++|+|.++.+.. ..+...+.+ .++|+++++||+|+.+.+.. ..+.+++.+..+++++++||.+
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 32 479999999999885432 223344433 36899999999998755444 3457788888999999999999
Q ss_pred CCCHHHHHHHHHHhcc
Q 029029 157 ATNVNDIFYEIAKRLP 172 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~ 172 (200)
+.|++++++.+.+...
T Consensus 153 g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 153 GRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999887653
No 179
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.2e-21 Score=133.70 Aligned_cols=161 Identities=25% Similarity=0.306 Sum_probs=123.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCccc--------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 78 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 78 (200)
....+.|+|+|+.++|||||+.++-. .+. +...++.|.. ..+++-....+.|||..|++..+.+|..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt-~~~~~~~~l~~~ki~~tvgLn----ig~i~v~~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKT-DFSKAYGGLNPSKITPTVGLN----IGTIEVCNAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHH-HHHhhhcCCCHHHeeccccee----ecceeeccceeEEEEcCChHHHHHHHHH
Confidence 34578899999999999999998752 222 2223333322 2222223678999999999999999999
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH------HcCCcEEE
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ------ENGLFFME 151 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~ 151 (200)
|+..+|++|+++|+++++.++.....++.+.. ....+.|+++.+||.|+.+. ....+++..+. +...++.+
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCcccc
Confidence 99999999999999999999888766665544 34579999999999998653 34444444443 23457999
Q ss_pred ecCCCCCCHHHHHHHHHHhcccc
Q 029029 152 TSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
+||.+|+||++.+.|+...+.++
T Consensus 167 vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 167 VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999999887
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.8e-20 Score=155.34 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=111.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCc---ccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
+.|+++|+.++|||||+++|++.. +..+..+..+.+.....+..++ ..+.+||+||++.+...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999998532 2222333333333333333333 78999999999988887778889999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC--CHHHHHHHHHHc----CCcEEEecCCCC
Q 029029 88 IVYDITN---QASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV--TAEEAQAYAQEN----GLFFMETSAKTA 157 (200)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 157 (200)
+|+|.++ +++.+. +..+.. .++| +++++||+|+.+.... ..+++..+.+.. +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~eh----l~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEH----LAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHH----HHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999997 344333 333332 3566 9999999998754322 123445555443 578999999999
Q ss_pred CCHHHHHHHHHHhccccC
Q 029029 158 TNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~ 175 (200)
.|++++++++.+.+....
T Consensus 152 ~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 152 QGIGELKKELKNLLESLD 169 (581)
T ss_pred CCchhHHHHHHHHHHhCC
Confidence 999999999988766544
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=2.3e-21 Score=140.11 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=107.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcc----------------cCcceeeEEEEEEEE--CCeEEEEEEEeCCCcc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------------ESTIGAAFFSQTLAV--NDATVKFEIWDTAGQE 70 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~ 70 (200)
+.++|+++|+.++|||||+++|+........ ....+.+........ ......+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999864321100 000112222222222 3556789999999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHH-HHHHHc---
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQ-AYAQEN--- 145 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 145 (200)
.+.......+..+|++|+|+|..+.-. ....+.+..+... ++|+++++||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccc-ccccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 888888888999999999999987522 2334444555444 678999999999862110 0111122 232332
Q ss_pred ---CCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 146 ---GLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 146 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
.++++++||.+|.|++++++.|.+.++
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 357999999999999999999998775
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.3e-20 Score=152.30 Aligned_cols=153 Identities=21% Similarity=0.186 Sum_probs=106.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhhhcCC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYRGA 83 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~ 83 (200)
+|+++|.+|+|||||+|+|++.. ........|++...........+..+.+|||||.. .+......++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 58999999999999999999654 22334445554433333333334579999999963 3334455567899
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHH
Q 029029 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVND 162 (200)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 162 (200)
|++++|+|..++.+... ..+...+.. .++|+++|+||+|+.+.... ... +...++ .++++||.+|.|+++
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHH
Confidence 99999999987533222 122222332 36899999999998653321 122 345566 699999999999999
Q ss_pred HHHHHHHhcccc
Q 029029 163 IFYEIAKRLPRV 174 (200)
Q Consensus 163 ~~~~l~~~~~~~ 174 (200)
+++++.+.+...
T Consensus 151 ll~~i~~~l~~~ 162 (429)
T TIGR03594 151 LLDAILELLPEE 162 (429)
T ss_pred HHHHHHHhcCcc
Confidence 999999988654
No 183
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=3.8e-20 Score=155.24 Aligned_cols=157 Identities=21% Similarity=0.256 Sum_probs=110.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcce--eeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG--AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.+..+|+|+|+.++|||||+++|....+........+ ...+......++....+.||||||++.+...+..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4678999999999999999999987655432222111 12223333334456899999999999999999889999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-------HHcC--CcEEEecCCC
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA-------QENG--LFFMETSAKT 156 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~ 156 (200)
+|+|+|+.+....... +.+..+. ..++|+++++||+|+.+. ..+.+.... ..++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~-E~I~~~k---~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAINYIQ---AANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhH-HHHHHHH---hcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999873221111 1222222 256899999999998642 222222222 2223 6899999999
Q ss_pred CCCHHHHHHHHHHhc
Q 029029 157 ATNVNDIFYEIAKRL 171 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~ 171 (200)
|.|+++++++|....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998764
No 184
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.1e-21 Score=132.94 Aligned_cols=171 Identities=29% Similarity=0.546 Sum_probs=146.7
Q ss_pred CCCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q 029029 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (200)
Q Consensus 1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 80 (200)
|...+.....++++++|..|.||||++++.+.+.+...+.++.|+..+.-...-+...+++..|||.|++.+......++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 45555556789999999999999999999999999999999999998887776666679999999999999999999999
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
-++.+.|++||+..+-++.++.+|...+.+.. .++|+++++||.|..... .......+-...++.|+++||+.+.|.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999988874 459999999999975432 222334445567889999999999999
Q ss_pred HHHHHHHHHhcccc
Q 029029 161 NDIFYEIAKRLPRV 174 (200)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (200)
..-|-|+++++...
T Consensus 158 ekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 158 ERPFLWLARKLTGD 171 (216)
T ss_pred ccchHHHhhhhcCC
Confidence 99999999988764
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=1.4e-20 Score=156.28 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=105.6
Q ss_pred CCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh--cCCcEEEE
Q 029029 17 GDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYY--RGAAAAII 88 (200)
Q Consensus 17 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 88 (200)
|++|+|||||+|+|.+.... .....|++.......+...+..+++|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~--v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT--VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe--ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999976543 3334455554444333333456899999998876543 23333 37899999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
|+|.++.+.. ..+..++.. .++|+++++||+|+.+.+... .+.+.+.+..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874321 222233322 468999999999987655444 346778888899999999999999999999998
Q ss_pred Hhc
Q 029029 169 KRL 171 (200)
Q Consensus 169 ~~~ 171 (200)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=1.4e-20 Score=131.56 Aligned_cols=152 Identities=22% Similarity=0.174 Sum_probs=101.3
Q ss_pred EECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCccccccc-------hhhhhcCCcEE
Q 029029 15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSL-------APMYYRGAAAA 86 (200)
Q Consensus 15 vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~ 86 (200)
++|++|+|||||+++|.+..... .....+.+.......... ....+.+||+||....... ...++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999998644331 222222222222222221 1568999999997655433 33477899999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH---HHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE---EAQAYAQENGLFFMETSAKTATNVNDI 163 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (200)
++++|..++....... +..... ..+.|+++++||.|+......... .........+.+++++||.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876554433 233332 357899999999998754322221 112223345678999999999999999
Q ss_pred HHHHHHhc
Q 029029 164 FYEIAKRL 171 (200)
Q Consensus 164 ~~~l~~~~ 171 (200)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 187
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=5.7e-20 Score=134.14 Aligned_cols=118 Identities=18% Similarity=0.301 Sum_probs=87.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC-cEEEEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA-AAAIIVY 90 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 90 (200)
+|+++|++|||||||+++|..+.+.....++ .................+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999977665443322 1111111111123457799999999999988888889998 9999999
Q ss_pred eCCCH-HHHHHHHHHHHHHHHh---CCCCCeEEEEEeCcCccCC
Q 029029 91 DITNQ-ASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 91 d~~~~-~s~~~~~~~~~~i~~~---~~~~~~~ivv~nK~D~~~~ 130 (200)
|+.+. .++.....|+..+... ...++|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 6677776666554332 2368999999999998653
No 188
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=6.9e-20 Score=152.21 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=114.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcc--cC-----c------ccCcceeeEEEEEEEE-----CCeEEEEEEEeCCCc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IE-----F------QESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQ 69 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~ 69 (200)
.+-.+|+++|+.++|||||+++|+...- .. . .....|.+.......+ ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3456899999999999999999986321 10 0 0112234443333222 455789999999999
Q ss_pred cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-
Q 029029 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF- 148 (200)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 148 (200)
.++...+..++..+|++|+|+|.++.........|.... ..+.|+++|+||+|+.+.. .......+....++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence 999888889999999999999999864444444443322 1367899999999985422 122233444445554
Q ss_pred --EEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 149 --FMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 149 --~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
++++||++|.|+++++++|.+.+....
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 899999999999999999999886553
No 189
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=7.4e-23 Score=141.15 Aligned_cols=181 Identities=31% Similarity=0.537 Sum_probs=152.6
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccccccchhhhhcC
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHSLAPMYYRG 82 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~ 82 (200)
+.++..-++++|+|..|+|||+++.+.....+...+..++|+++..+....+.. .+++++||..|++++..+..-+++.
T Consensus 19 p~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyke 98 (229)
T KOG4423|consen 19 PKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKE 98 (229)
T ss_pred CchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecC
Confidence 344567789999999999999999999988888888899999988877777543 4689999999999999999999999
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCcCccCCCCC-CHHHHHHHHHHcCC-cEEEecCCC
Q 029029 83 AAAAIIVYDITNQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDARKV-TAEEAQAYAQENGL-FFMETSAKT 156 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (200)
+++..+|||++...+|+...+|.+.+..- .....|+++..||+|+...... .......+.+++++ ..+++|++.
T Consensus 99 a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 99 AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 99999999999999999999999987663 2356789999999998653322 24667788888887 599999999
Q ss_pred CCCHHHHHHHHHHhccccCCCCCCCCce
Q 029029 157 ATNVNDIFYEIAKRLPRVQPAPNPSGMV 184 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 184 (200)
+.++.|+-..+++++.....++..+.-+
T Consensus 179 nkni~Ea~r~lVe~~lvnd~q~~~s~~~ 206 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKILVNDEQPIKSSAV 206 (229)
T ss_pred ccChhHHHHHHHHHHHhhccCCcccccc
Confidence 9999999999999999887666655444
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=2.2e-20 Score=151.22 Aligned_cols=147 Identities=22% Similarity=0.201 Sum_probs=100.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYY 80 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 80 (200)
.+|+++|.+|+|||||+++|.+.... ......+++. .......++ ..+.+|||||... .......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 47999999999999999999965531 2223333333 233333333 7899999999876 222334567
Q ss_pred cCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCC
Q 029029 81 RGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTA 157 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 157 (200)
..+|++|+|+|..++.+.. .+..|+. . .++|+++|+||+|+.+. ......+ ...++. ++++||++|
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence 8999999999998753322 2233333 2 26899999999996431 1222222 345654 899999999
Q ss_pred CCHHHHHHHHHHhc
Q 029029 158 TNVNDIFYEIAKRL 171 (200)
Q Consensus 158 ~~i~~~~~~l~~~~ 171 (200)
.|++++++++.+..
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998844
No 191
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=1.1e-19 Score=153.63 Aligned_cols=152 Identities=19% Similarity=0.241 Sum_probs=107.3
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+...|+|+|+.++|||||+++|....+.......++.+.....+..+ +..++||||||++.|...+...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 4678899999999999999999998765543322222112222223333 46799999999999998888888999999
Q ss_pred EEEEeCCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH-------HHHcC--CcEEEecC
Q 029029 87 IIVYDITNQ---ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY-------AQENG--LFFMETSA 154 (200)
Q Consensus 87 i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa 154 (200)
|+|+|..+. ++.+. +... ...++|+++++||+|+.+. ..+..... ...++ ++++++||
T Consensus 365 ILVVdAddGv~~qT~e~----i~~a---~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA----INHA---KAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred EEEEECCCCCCHhHHHH----HHHH---HhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 999999873 33222 2222 2357899999999998542 22222211 22233 68999999
Q ss_pred CCCCCHHHHHHHHHHh
Q 029029 155 KTATNVNDIFYEIAKR 170 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~ 170 (200)
++|.|+++++++|...
T Consensus 435 ktG~GI~eLle~I~~~ 450 (787)
T PRK05306 435 KTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCchHHHHhhhhh
Confidence 9999999999998764
No 192
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.84 E-value=2.8e-20 Score=123.00 Aligned_cols=159 Identities=23% Similarity=0.269 Sum_probs=120.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+++||+++|..++|||||+..|. ...+....|+.|........ ...+.+.+||.+|+...+..|..|+.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~-sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLK-SEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHc-cCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 4679999999999999999999998 44455566777744333222 3458899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-----CcEEEecCCCCCCH
Q 029029 87 IIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-----LFFMETSAKTATNV 160 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 160 (200)
|||+|+++.-.|+++...+-++.. ......|+.+.+||.|+... ...++...-+...+ ..+-++||.+++|+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence 999999998888887555544443 44478999999999998543 22322222222222 24679999999999
Q ss_pred HHHHHHHHHhc
Q 029029 161 NDIFYEIAKRL 171 (200)
Q Consensus 161 ~~~~~~l~~~~ 171 (200)
..-.+|++...
T Consensus 168 ~dg~~wv~sn~ 178 (185)
T KOG0074|consen 168 TDGSDWVQSNP 178 (185)
T ss_pred cCcchhhhcCC
Confidence 99999987643
No 193
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.9e-21 Score=127.95 Aligned_cols=163 Identities=22% Similarity=0.302 Sum_probs=120.3
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
.+++.+|++.|..|+||||++.++..+.... ..|++|... .++..++.++++||..|+...+..|+.|+.+.|.+
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceE
Confidence 3489999999999999999998887555443 345655333 33445788999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCC---CCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK---VTAEEAQAYAQENGLFFMETSAKTATNVND 162 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (200)
|||+|.++++...... +++..+.+..-.+..+++++||.|...... +.........+..-+.+|++||.+|+|++.
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999999987666553 344444444345677899999999754211 111111111223335799999999999999
Q ss_pred HHHHHHHhcccc
Q 029029 163 IFYEIAKRLPRV 174 (200)
Q Consensus 163 ~~~~l~~~~~~~ 174 (200)
.++||.+-+.+.
T Consensus 170 ~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 170 AMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHhcc
Confidence 999999987653
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4.1e-20 Score=144.61 Aligned_cols=174 Identities=21% Similarity=0.216 Sum_probs=121.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc---------cchhhhhc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPMYYR 81 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 81 (200)
..|+++|.||+|||||.|+|+ +.-.......+|++.........-.+..|.++||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~-g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT-GRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh-CCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 579999999999999999999 55556677888888777665555555679999999966322 22334577
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCH
Q 029029 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNV 160 (200)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 160 (200)
.||++|||+|....-+-.. ....+.++ . .++|+++|+||+|-. ..+.....+-.+|. ..+.+||.+|.|+
T Consensus 83 eADvilfvVD~~~Git~~D-~~ia~~Lr-~--~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 83 EADVILFVVDGREGITPAD-EEIAKILR-R--SKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHH-h--cCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccCH
Confidence 8999999999987422111 12222233 2 468999999999953 22223333345565 5899999999999
Q ss_pred HHHHHHHHHhcc-ccCCCC----CCCCceeccCCCCCCC
Q 029029 161 NDIFYEIAKRLP-RVQPAP----NPSGMVLMDRPGERTA 194 (200)
Q Consensus 161 ~~~~~~l~~~~~-~~~~~~----~~~~~~~~~~~~~~~~ 194 (200)
.++++++.+.+. ...... .+-.+.+.-+|+-.+.
T Consensus 154 ~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKS 192 (444)
T COG1160 154 GDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKS 192 (444)
T ss_pred HHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCch
Confidence 999999999983 222222 2355666777776654
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=5.9e-20 Score=148.06 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=105.8
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhC--cccC---------------------------cccCcceeeEEEEEEEEC
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKG--QFIE---------------------------FQESTIGAAFFSQTLAVN 55 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~ 55 (200)
+.....++|+++|+.++|||||+++|+.. .... ......|.+.......+.
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 44567899999999999999999999852 1110 001122455555555566
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (200)
.....+.+||+||++.+.......+..+|++++|+|.+++++... ...++...... ...++++++||+|+.+....
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHH
Confidence 667899999999998876655566789999999999998743211 11222222222 23579999999998642211
Q ss_pred ----CHHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q 029029 134 ----TAEEAQAYAQENG-----LFFMETSAKTATNVND 162 (200)
Q Consensus 134 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 162 (200)
..+++..+++..+ ++++++||++|.|+.+
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 1234555666554 5799999999999986
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=1.2e-19 Score=154.28 Aligned_cols=154 Identities=25% Similarity=0.203 Sum_probs=106.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYY 80 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 80 (200)
...+|+++|.+++|||||+|+|++... ....+..|++...........+..+.+|||||.+. +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 357899999999999999999996543 33445566665554444333356799999999753 223334467
Q ss_pred cCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCC
Q 029029 81 RGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTAT 158 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (200)
..+|++|+|+|.++.. ... ..|...+.. .++|+++|+||+|+.... .....+. ..+. ..+++||++|.
T Consensus 353 ~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 353 SLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGR 422 (712)
T ss_pred HhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCC
Confidence 8999999999998642 122 234444433 578999999999975421 1122221 2233 35799999999
Q ss_pred CHHHHHHHHHHhccc
Q 029029 159 NVNDIFYEIAKRLPR 173 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~ 173 (200)
|++++++++++.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999998865
No 197
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=3.2e-19 Score=132.67 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=100.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhhcCC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGA 83 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 83 (200)
.+|+++|++|+|||||+++|.+..... .....++.......+...+..+++||+||..... ......++++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 379999999999999999999654321 1112222222222222345689999999974322 1223467899
Q ss_pred cEEEEEEeCCCHH-HHHHHHHHHHH----------------------------------------H-H------------
Q 029029 84 AAAIIVYDITNQA-SFERAKKWVQE----------------------------------------L-Q------------ 109 (200)
Q Consensus 84 d~~i~v~d~~~~~-s~~~~~~~~~~----------------------------------------i-~------------ 109 (200)
|++++|+|.++++ ....+.+.++. + .
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999998754 23333333320 0 0
Q ss_pred ------------HhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 110 ------------AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 110 ------------~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
..+...+|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.+.+.+.-
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~~ 227 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLGL 227 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhCc
Confidence 11124579999999999843 3344444433 458999999999999999999987653
No 198
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.2e-19 Score=147.00 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=106.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------h
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-----------A 76 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 76 (200)
...++|+++|.+|+|||||+++|++... ....+..|++.......+...+..+.+|||||....... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 3579999999999999999999996542 123344455555444444334567899999996432211 1
Q ss_pred hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH-HHHH----HcCCcEEE
Q 029029 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ-AYAQ----ENGLFFME 151 (200)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~~ 151 (200)
..++..+|++|+|+|.+++.+.... .++..+.. .++|+++++||+|+.+... .++.. .+.. ...+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 2356789999999999987554432 23333333 3689999999999863321 11111 1111 23468999
Q ss_pred ecCCCCCCHHHHHHHHHHhccc
Q 029029 152 TSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
+||++|.|++++++.+.+....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998775543
No 199
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=5.2e-19 Score=122.44 Aligned_cols=163 Identities=25% Similarity=0.378 Sum_probs=121.1
Q ss_pred CCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcc-----cCcce---eeEEEEEEEEC-CeEEEEEEEeCCCccccc
Q 029029 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----ESTIG---AAFFSQTLAVN-DATVKFEIWDTAGQERYH 73 (200)
Q Consensus 3 ~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-----~~~~~---~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~ 73 (200)
.-.+.....||+|+|+.++||||+++++......... ...-+ ++......... +.+..+.+++||||+++.
T Consensus 3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH
Confidence 3456778999999999999999999999865431110 00001 11111111111 234689999999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc--CCcEEE
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN--GLFFME 151 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~ 151 (200)
.+|..+++++.++|+++|.+.+..+ +....+..+.... .+|+++.+||.|+... .+.++++++.+.. .+++++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceee
Confidence 9999999999999999999998877 4444444444432 2899999999998653 5777788877766 789999
Q ss_pred ecCCCCCCHHHHHHHHHHh
Q 029029 152 TSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~ 170 (200)
.+|.++++..+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999999988776
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=1.1e-19 Score=145.41 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=107.7
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccC---ccc--CcceeeEEE----------------EEEEECC------eEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQE--STIGAAFFS----------------QTLAVND------ATV 59 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~---~~~--~~~~~~~~~----------------~~~~~~~------~~~ 59 (200)
+++.++|+++|+.++|||||+++|.+..... +.. -+....+.. .....++ ...
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 3678999999999999999999997432111 100 011111100 0000011 146
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHH
Q 029029 60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEE 137 (200)
Q Consensus 60 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~ 137 (200)
.+.+||+||++++...+......+|++++|+|.+++....+..+.+..+... ...|+++++||+|+.+.... ..++
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 7999999999998877777788899999999999643122233334433333 23468999999998653221 1233
Q ss_pred HHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 138 AQAYAQEN---GLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 138 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
+..+.... +++++++||++|.|+++++++|...+..
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 44444332 5689999999999999999999987653
No 201
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=3.1e-19 Score=126.07 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=99.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccchhhhhc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAPMYYR 81 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 81 (200)
.|+++|.+|+|||||++.+.++.......++.+.+........+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996666555666665555444444433 899999999532 2233333333
Q ss_pred ---CCcEEEEEEeCCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHH--HcCCcEEEe
Q 029029 82 ---GAAAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQ--ENGLFFMET 152 (200)
Q Consensus 82 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 152 (200)
..+++++++|...... ...+..|+.. .+.|+++++||+|+....... ........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4578889999876522 1222333322 247899999999985432111 122222222 344579999
Q ss_pred cCCCCCCHHHHHHHHHHhc
Q 029029 153 SAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~ 171 (200)
||+++.++++++++|.+.+
T Consensus 152 Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 152 SSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ecCCCCCHHHHHHHHHHhC
Confidence 9999999999999998753
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.82 E-value=2.5e-19 Score=144.48 Aligned_cols=156 Identities=21% Similarity=0.187 Sum_probs=104.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCccc--C---------------------------cccCcceeeEEEEEEEECCe
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------------------------FQESTIGAAFFSQTLAVNDA 57 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~ 57 (200)
..+.++|+++|++++|||||+++|+...-. . ......|++.......++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 456799999999999999999999843211 0 01113455666666666667
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARK---- 132 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~---- 132 (200)
.+.+.+|||||++.+.......+..+|++++|+|.+++... .....++...... ...|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 78999999999987765555567889999999999873112 1122233333332 1246899999999864211
Q ss_pred CCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHH
Q 029029 133 VTAEEAQAYAQENG-----LFFMETSAKTATNVNDIF 164 (200)
Q Consensus 133 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 164 (200)
...+++..+.+..+ ++++++||++|.|+++.+
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234455555444 469999999999998743
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=4.1e-19 Score=147.25 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=117.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC--cccCc------------ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEF------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 76 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 76 (200)
.+|+|+|+.++|||||+++|+.. .+... .....|.+.......+...++.+.+|||||+.++...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999862 22111 11223555655555555667899999999999998888
Q ss_pred hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC-CHHHHHHHHH-------HcCCc
Q 029029 77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV-TAEEAQAYAQ-------ENGLF 148 (200)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 148 (200)
..++..+|++++|+|..+. ...+...|+...... ++|+++++||+|+.+.+.. ..+++..++. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 8899999999999999863 234445666665543 6789999999998643211 1233333332 23568
Q ss_pred EEEecCCCCC----------CHHHHHHHHHHhccccC
Q 029029 149 FMETSAKTAT----------NVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 149 ~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~ 175 (200)
++.+||++|. |+..+|+.+++.+....
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 9999999996 79999999999887654
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=2.2e-19 Score=131.65 Aligned_cols=149 Identities=26% Similarity=0.256 Sum_probs=95.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCc-----------------------------ccCcceeeEEEEEEEECCeEEEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF-----------------------------QESTIGAAFFSQTLAVNDATVKFE 62 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (200)
||+++|++|+|||||+++|+...-.-. .....|++.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999986322100 000123344444444444566899
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC----CHHHH
Q 029029 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV----TAEEA 138 (200)
Q Consensus 63 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~----~~~~~ 138 (200)
+|||||+..+...+...+..+|++|+|+|.+++.. .........+... ...++++|+||+|+.+.... ...++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999998776556667889999999999987521 1222222222222 12357889999998642211 11234
Q ss_pred HHHHHHcCC---cEEEecCCCCCCHHHH
Q 029029 139 QAYAQENGL---FFMETSAKTATNVNDI 163 (200)
Q Consensus 139 ~~~~~~~~~---~~~~~Sa~~~~~i~~~ 163 (200)
..+.+..+. +++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 444555553 5899999999999853
No 205
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4.7e-19 Score=139.09 Aligned_cols=155 Identities=20% Similarity=0.190 Sum_probs=117.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhh--------hh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM--------YY 80 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------~~ 80 (200)
.-++++++|.||+|||||+|.|+ +.-.......+|++.......++-.++++.+.||+|..+-....+. .+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~-~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALL-GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHh-cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 46899999999999999999999 5556667888899988888888888899999999997544333322 46
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
..||++++|+|.+.+.+-.. ...+. ....++|+++|.||.|+........ .....+.+++.+|++++.|+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d-~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 295 EEADLVLFVLDASQPLDKED-LALIE----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEGL 364 (454)
T ss_pred HhCCEEEEEEeCCCCCchhh-HHHHH----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccCH
Confidence 89999999999998622111 12222 2235789999999999976533211 11223446899999999999
Q ss_pred HHHHHHHHHhcccc
Q 029029 161 NDIFYEIAKRLPRV 174 (200)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (200)
+.+.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999888776
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=5.3e-19 Score=141.48 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=104.2
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcc-cCcceeeEEEE----EE----------------EEC--C----eE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQ----TL----------------AVN--D----AT 58 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~----~~----------------~~~--~----~~ 58 (200)
+..+.++|+++|+.++|||||+.+|.+....... ...-|.+.... .. ..+ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4567899999999999999999999642111100 00111221111 00 000 0 13
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HH
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AE 136 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~ 136 (200)
..+.+|||||++.+..........+|++++|+|.+++.........+..+... ...|+++++||+|+.+..... .+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 67999999999877655555556789999999999642111112222223222 224689999999986543221 23
Q ss_pred HHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 137 EAQAYAQEN---GLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 137 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
++..+.+.. +.+++++||++|.|+++++++|.+.+..
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 344444332 4689999999999999999999987754
No 207
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=6.9e-19 Score=149.58 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=103.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceee--EEEEEEEECCeEEEEEEEeCCCcccc----------ccc-
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERY----------HSL- 75 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~- 75 (200)
...+|+++|.+|+|||||+++|++.... ...+..|++ .......+++ ..+.+|||||.... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA-VVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc-ccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHH
Confidence 3589999999999999999999976531 112223333 3233344444 45779999996421 111
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-H----cCCcEE
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-E----NGLFFM 150 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~ 150 (200)
....+..+|++++|+|.+++.+..... ++..+.. .++|+++|+||+|+.+... .+....... . ...+++
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence 122367899999999999876665543 3333333 4689999999999865321 122222221 1 134678
Q ss_pred EecCCCCCCHHHHHHHHHHhcccc
Q 029029 151 ETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
.+||++|.|++++++.+.+.+...
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998877653
No 208
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.8e-18 Score=125.18 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=99.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 75 (200)
.++|+++|+.++|||||+++|++.... .......|.+.......++.....+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999863110 001112345555555556666778999999999887776
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHc-----C
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQEN-----G 146 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 146 (200)
....+..+|++++|+|....-. ......+..+... ++| +++++||+|+...... ..+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7777889999999999986421 2233444444443 455 7789999998532221 112344444443 3
Q ss_pred CcEEEecCCCCCCH
Q 029029 147 LFFMETSAKTATNV 160 (200)
Q Consensus 147 ~~~~~~Sa~~~~~i 160 (200)
++++++||.+|.++
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 67999999999985
No 209
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.2e-18 Score=142.18 Aligned_cols=159 Identities=17% Similarity=0.126 Sum_probs=122.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh--
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYY-- 80 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~-- 80 (200)
+..+|+++|+||+|||||.|+|++... ...-.+|++...++......+..+++.|+||...+... .+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 356799999999999999999996443 35567789999999888888888999999996443322 22233
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
..+|++|-|+|.++.+..-. ..-++.+ -+.|++++.|++|..+.+.+.. +.+++.+..|+|++++||++|.|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLy---ltlQLlE---~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLY---LTLQLLE---LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHHHH---HHHHHHH---cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCH
Confidence 46799999999988643211 1122222 3678999999999887655544 377888899999999999999999
Q ss_pred HHHHHHHHHhccccCC
Q 029029 161 NDIFYEIAKRLPRVQP 176 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~~ 176 (200)
++++..+.+.......
T Consensus 153 ~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 153 EELKRAIIELAESKTT 168 (653)
T ss_pred HHHHHHHHHhcccccc
Confidence 9999999887666654
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.80 E-value=3.1e-18 Score=141.93 Aligned_cols=162 Identities=16% Similarity=0.209 Sum_probs=118.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh--CcccCc------------ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK--GQFIEF------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 75 (200)
-.+|+++|+.++|||||+++|+. +.+... .....|.++......+...++.+.+|||||+..+...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999996 333221 1234566777777777777899999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHHHHHHH-------cCC
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQE-------NGL 147 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~ 147 (200)
+..++..+|++|+|+|+.+... .....++..... .++|.++++||+|+...+. ...+++..+... ..+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 9999999999999999987422 223333333333 3678899999999864321 112334444322 346
Q ss_pred cEEEecCCCCC----------CHHHHHHHHHHhccccC
Q 029029 148 FFMETSAKTAT----------NVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 148 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~ 175 (200)
+++.+||.+|. ++..+++.+++.+....
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 79999999998 58899999998886553
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=9.4e-19 Score=118.53 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=95.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhcCCcEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 87 (200)
||+++|+.|||||||+++|.+.... +..+..+.+ .=.++||||.- .+.........+||+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999864432 323322222 12347999943 23333344567899999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE 166 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~ 166 (200)
++.|.+++.+.-. ..+... .+.|+|-|+||+|+... ..+.+.++++.+.-|+. +|++|+.+|+|+++++++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998643211 112222 35799999999998732 34667788888888884 899999999999999998
Q ss_pred HH
Q 029029 167 IA 168 (200)
Q Consensus 167 l~ 168 (200)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 212
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=2.2e-18 Score=142.37 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=102.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcc----cCcceeeEEEEEEE------------ECCeEEEEEEEeCCCcccc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLA------------VNDATVKFEIWDTAGQERY 72 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~i~D~~G~~~~ 72 (200)
+..-|+++|++++|||||+++|.+..+.... ..+.|..+...... ++.....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 3456999999999999999999976553221 12223222211110 0011124899999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----C--------CHHH
Q 029029 73 HSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----V--------TAEE 137 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----~--------~~~~ 137 (200)
..++..++..+|++++|+|.++ +++++.+. .+.. .++|+++++||+|+.+... . ....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9888889999999999999987 44443332 2222 3689999999999863210 0 0000
Q ss_pred ------------HHHHHH------------H--cCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 138 ------------AQAYAQ------------E--NGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 138 ------------~~~~~~------------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
...+.+ . ..++++++||++|+|+++++.+|.....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 011111 0 1357999999999999999999876443
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=5.7e-18 Score=126.20 Aligned_cols=114 Identities=19% Similarity=0.165 Sum_probs=82.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccC-------------c---ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIE-------------F---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 75 (200)
+|+++|+.|+|||||+++|+...... . .....+.+.......+...+.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998632110 0 0112233444444555556788999999999988888
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+..+++.+|++++|+|..+.... ....++..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence 88899999999999999875332 33455555544 3689999999999864
No 214
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-18 Score=127.03 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=116.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc------------c
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY------------H 73 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------------~ 73 (200)
..++.++|+|+|+|++|||||.|.+++..... .+....++.......+.....++.|+||||.-.- -
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~-vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccc-ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 34778999999999999999999999655543 4444556666666667777889999999993210 1
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH------------HHH
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE------------AQA 140 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~------------~~~ 140 (200)
.-....+..||++++++|.++... .+ ...+..+..+ ..+|-++|+||+|......+.... ..+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 112234678999999999996321 11 2334444444 567899999999975432111110 111
Q ss_pred HHHH-cC------------C----cEEEecCCCCCCHHHHHHHHHHhccccCCCCCCCCce
Q 029029 141 YAQE-NG------------L----FFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 184 (200)
Q Consensus 141 ~~~~-~~------------~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 184 (200)
..+. .. . .+|.+||.+|.|++++.++|..++..... .+|.+++
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW-~y~a~i~ 282 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW-KYPADIV 282 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC-CCCcccc
Confidence 1111 11 1 38999999999999999999997765443 5666665
No 215
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=4.8e-18 Score=141.50 Aligned_cols=158 Identities=17% Similarity=0.189 Sum_probs=104.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCc---ccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
-|+++|+.++|||||+++|++.. +..... -|.+.......+ ...+..+.+||+||++.+...+...+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~--rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKK--RGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhccc--CCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 48999999999999999998532 222221 233322222222 112346899999999988777777788999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCCC--HHHHHHHHHHcC---CcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT--AEEAQAYAQENG---LFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~ 161 (200)
+|+|..+.. .....+.+..+... ++| +++|+||+|+.+..... .+++..+....+ .+++++||++|.|++
T Consensus 80 LVVda~eg~-~~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 80 LVVACDDGV-MAQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999998731 12222333333333 344 57999999986532211 233444444444 689999999999999
Q ss_pred HHHHHHHHhccccC
Q 029029 162 DIFYEIAKRLPRVQ 175 (200)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (200)
+++++|.+......
T Consensus 156 ~L~~~L~~~~~~~~ 169 (614)
T PRK10512 156 ALREHLLQLPEREH 169 (614)
T ss_pred HHHHHHHHhhcccc
Confidence 99999987665543
No 216
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=6.9e-18 Score=132.24 Aligned_cols=160 Identities=21% Similarity=0.200 Sum_probs=115.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------hh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-----------AP 77 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~ 77 (200)
..+||+|+|.|++|||||+|+|+ +.-....++..|++.......++..+.++.++||+|..+-... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il-geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL-GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc-cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 46999999999999999999999 4445567788899988888888777889999999994321111 11
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEe
Q 029029 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMET 152 (200)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 152 (200)
..+..+|++++|+|.+++-+-.. .+....+.. .+.++++++||-|+.+......++.+..... ...+++.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQD-LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 24678999999999998744222 222223322 4778999999999977543444443333222 23479999
Q ss_pred cCCCCCCHHHHHHHHHHhccc
Q 029029 153 SAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
||.++.++..+|+.+.+....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999987764433
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=4e-18 Score=125.46 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=79.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcc-----------------cCcceeeEEEEEEEE-----CCeEEEEEEEeCCCc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------------ESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQ 69 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~ 69 (200)
+|+++|+.|+|||||+++|+........ ....|.+........ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432110 111222322222222 355688999999999
Q ss_pred cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
..+......++..+|++++|+|..+..+.. ...++..... .++|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECcccC
Confidence 988878888899999999999998765432 2334444333 358999999999975
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=9.6e-18 Score=133.78 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=111.3
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
....+.++|+++|+.++|||||+++|++.... .......|.+.......++.....+.++||||++
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 34567899999999999999999999852110 0111133455555555565566789999999998
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCCC---HHHHHHHHHHcC
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT---AEEAQAYAQENG 146 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 146 (200)
++.......+..+|++++|+|..+... ....+++..+... ++| +++++||+|+.+..... .+++..+.+..+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 776666666778999999999986321 2223334444433 566 67889999986432211 124445544444
Q ss_pred -----CcEEEecCCCCC--------CHHHHHHHHHHhcc
Q 029029 147 -----LFFMETSAKTAT--------NVNDIFYEIAKRLP 172 (200)
Q Consensus 147 -----~~~~~~Sa~~~~--------~i~~~~~~l~~~~~ 172 (200)
++++++||.+|. ++.++++.+.+.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 67888888887765
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=1.3e-18 Score=128.57 Aligned_cols=148 Identities=19% Similarity=0.164 Sum_probs=95.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCccc-----------------------------CcccCcceeeEEEEEEEECCeEEEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFI-----------------------------EFQESTIGAAFFSQTLAVNDATVKFE 62 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (200)
+|+++|+.++|||||+.+|+...-. .......|++.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999742110 00011223444444455555678899
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEeCCCHH------HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC--CCC
Q 029029 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA------SFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR--KVT 134 (200)
Q Consensus 63 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~--~~~ 134 (200)
+|||||+..+.......+..+|++|+|+|.++.. ........+...... ...|+++++||+|+.... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 9999998777666666678899999999998742 111222222222222 236899999999986321 111
Q ss_pred H----HHHHHHHHHcC-----CcEEEecCCCCCCHH
Q 029029 135 A----EEAQAYAQENG-----LFFMETSAKTATNVN 161 (200)
Q Consensus 135 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 161 (200)
. +++.......+ ++++++||++|.|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 22333334433 569999999999987
No 220
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=1.7e-17 Score=137.60 Aligned_cols=159 Identities=23% Similarity=0.244 Sum_probs=102.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcc----cCcceeeEEEEEEEE--CCeE-----E-----EEEEEeCCCc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLAV--NDAT-----V-----KFEIWDTAGQ 69 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~G~ 69 (200)
+..++..|+++|++++|||||+++|.+....... ..+.|.++....... .+.. . .+.||||||+
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 3456778999999999999999999854332111 112232222111100 0111 1 2789999999
Q ss_pred cccccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----CCH-------
Q 029029 70 ERYHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----VTA------- 135 (200)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----~~~------- 135 (200)
+.+...+...+..+|++++|+|.++ ++++..+. .+.. .++|+++++||+|+..... ...
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 9998888888899999999999987 55544432 2222 4689999999999852110 000
Q ss_pred -H-----------HHHHHHHHc---------------CCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029 136 -E-----------EAQAYAQEN---------------GLFFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 136 -~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
. ++....... .++++++||.+|.|++++++.+...+
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 011111111 25789999999999999998876543
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=117.97 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=110.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc----------cccccchhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLAPM 78 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~ 78 (200)
...-|+++|.+++|||||||+|+++..-...+.++|.|...+.+.+++. +.+.|.||. +........
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 3568999999999999999999987766778889999999998888764 889999993 233344444
Q ss_pred hhc---CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC----Cc--E
Q 029029 79 YYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG----LF--F 149 (200)
Q Consensus 79 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~--~ 149 (200)
|+. +-.++++++|+..+-.-.. ++.++.+.. .++|+++++||+|.....+.. ..+...++... .. +
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceE
Confidence 554 3467888999987532211 233333333 478999999999987643322 11222232222 22 6
Q ss_pred EEecCCCCCCHHHHHHHHHHhccc
Q 029029 150 METSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
+.+|+.++.|++++...|.+.+..
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhhc
Confidence 788999999999999998887654
No 222
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=2.1e-17 Score=127.80 Aligned_cols=161 Identities=20% Similarity=0.166 Sum_probs=115.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--cccchhh------h
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPM------Y 79 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~------~ 79 (200)
..-..|+++|.+|+|||||+|.|++........-..+.+.....+.+.+ +..+.+.||.|.-+ ...+... -
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 4467899999999999999999996555444444444444455555544 67899999999432 1112222 2
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (200)
...+|+++.|+|.++|.....+......+.......+|+++|.||+|+..... .......... ..+.+||++|.|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence 46799999999999997777777777777776667799999999999765432 1111111112 588999999999
Q ss_pred HHHHHHHHHHhcccc
Q 029029 160 VNDIFYEIAKRLPRV 174 (200)
Q Consensus 160 i~~~~~~l~~~~~~~ 174 (200)
++.+++.|.+.+...
T Consensus 344 l~~L~~~i~~~l~~~ 358 (411)
T COG2262 344 LDLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988754
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.9e-17 Score=132.14 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=109.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc--------------cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF--------------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
...+.++|+++|+.++|||||+++|++... ........|.+.......++.....+.|+||||++.
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 446789999999999999999999986211 001112334555555555555667899999999987
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCcCccCCCCC---CHHHHHHHHHHcC-
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKV---TAEEAQAYAQENG- 146 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~- 146 (200)
+.......+..+|++++|+|..+.. .....+++..+.. .++|.+ +++||+|+.+..+. ..+++..+.+.++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 7666666778899999999998732 2223344444443 356755 67999998643221 1124455555543
Q ss_pred ----CcEEEecCCCCC----------CHHHHHHHHHHhcc
Q 029029 147 ----LFFMETSAKTAT----------NVNDIFYEIAKRLP 172 (200)
Q Consensus 147 ----~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 172 (200)
++++++||.++. ++.++++.|.+.+.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 679999999984 67788888877654
No 224
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=123.02 Aligned_cols=166 Identities=18% Similarity=0.126 Sum_probs=117.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HSLAPMY 79 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~ 79 (200)
.....+++++|+|++|||||++.|++.... .....-++..+....++..+.++|+.|+||.-.- ....-..
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~se--va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSE--VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCcc--ccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 355789999999999999999999964432 2233334555666677788899999999984321 1234456
Q ss_pred hcCCcEEEEEEeCCCHHH-HHHHHHHHH----------------------------------------------------
Q 029029 80 YRGAAAAIIVYDITNQAS-FERAKKWVQ---------------------------------------------------- 106 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~---------------------------------------------------- 106 (200)
.++||++++|+|...... .+.+.+.++
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 789999999999986544 444444443
Q ss_pred -------------HHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 107 -------------ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 107 -------------~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
.....+...+|.++|.||+|+.. .++...+.+.. .++.+||..+.|++++.+.|++.+.-
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 00111234789999999999754 34455555444 67999999999999999999999876
Q ss_pred cCCCCCCC
Q 029029 174 VQPAPNPS 181 (200)
Q Consensus 174 ~~~~~~~~ 181 (200)
.+--..|.
T Consensus 291 iRVYtK~~ 298 (365)
T COG1163 291 IRVYTKPP 298 (365)
T ss_pred EEEEecCC
Confidence 54443333
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.8e-17 Score=132.30 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=100.7
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
.+..+.++|+++|+.++|||||+++|++.... .......|.+.......++.....+.+|||||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 45677899999999999999999999843110 0111123455555556666667789999999998
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEeCcCccCCCCCC---HHHHHHHHHHcC
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKADLLDARKVT---AEEAQAYAQENG 146 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 146 (200)
+|.......+..+|++++|+|..+... ....+.+..+... ++|. ++++||+|+.+..... .+++..+++.++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 876655556678899999999987321 1222334444433 4565 4689999986532211 234555665554
Q ss_pred -----CcEEEecCCCCC
Q 029029 147 -----LFFMETSAKTAT 158 (200)
Q Consensus 147 -----~~~~~~Sa~~~~ 158 (200)
++++++||.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 226
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.75 E-value=1e-17 Score=133.90 Aligned_cols=173 Identities=22% Similarity=0.307 Sum_probs=129.1
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
+.....+||+++|..|+||||||-.|+...++....+....- .....+.-..+...+.|++...+.+.....-++.||
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHhhcC
Confidence 445679999999999999999999999988877665543211 111222233455899999877666666677889999
Q ss_pred EEEEEEeCCCHHHHHHH-HHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHH-HHHHHHHcC-C-cEEEecCCCCC
Q 029029 85 AAIIVYDITNQASFERA-KKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEE-AQAYAQENG-L-FFMETSAKTAT 158 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~ 158 (200)
++.++|+.+++++++.+ ..|+..++.... .++|+|+|+||+|.......+.+. ...+...+. + .-++|||++-.
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA 161 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 99999999999999998 689999988642 689999999999997655443333 222322222 1 25899999999
Q ss_pred CHHHHHHHHHHhccccCCCCC
Q 029029 159 NVNDIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~~~~~~~ 179 (200)
++.++|+...+.+.......+
T Consensus 162 n~~e~fYyaqKaVihPt~PLy 182 (625)
T KOG1707|consen 162 NVSELFYYAQKAVIHPTSPLY 182 (625)
T ss_pred hhHhhhhhhhheeeccCcccc
Confidence 999999998887776655444
No 227
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=3.5e-17 Score=120.52 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=106.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccc-----cchhhhhcCCcE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYH-----SLAPMYYRGAAA 85 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~~d~ 85 (200)
||+++|+.+|||||+.+.+.++.. +......+.+.......+ ......+++||+||+..+. ......++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999885443 333333333333333333 2445689999999987543 345668899999
Q ss_pred EEEEEeCCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC------CHHHHHHHHHHcC---CcEEEec
Q 029029 86 AIIVYDITNQAS---FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV------TAEEAQAYAQENG---LFFMETS 153 (200)
Q Consensus 86 ~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~S 153 (200)
+|||+|+...+. ...+...++.+... .++..+.+++.|+|+..+... ..+.+.+.+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999984332 33334455555554 478999999999998643211 1122333344455 7899999
Q ss_pred CCCCCCHHHHHHHHHHhccccCCCCC
Q 029029 154 AKTATNVNDIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~~~~ 179 (200)
..+ ..+.++|..++..+..+.+...
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~le 183 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTLE 183 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHHH
Confidence 999 5899999999999987665544
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=8.3e-17 Score=117.05 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=96.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCccee---eEEEEEEEECCeEEEEEEEeCCCccccccchhhh-----hc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA---AFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-----YR 81 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~ 81 (200)
++||+++|.+|+|||||+|.|++...........+. +.....+.. .....+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999975443322222221 111111111 113469999999975432222222 56
Q ss_pred CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC-----------CHHHHHHHH----HHc
Q 029029 82 GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKV-----------TAEEAQAYA----QEN 145 (200)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-----------~~~~~~~~~----~~~ 145 (200)
.+|+++++.+. .+... ..+++.+... +.|+++|+||+|+...... ..+.++..+ ...
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78998887542 23333 3455555554 5789999999998532110 011112121 122
Q ss_pred C---CcEEEecCC--CCCCHHHHHHHHHHhccccC
Q 029029 146 G---LFFMETSAK--TATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 146 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~ 175 (200)
+ -++|.+|+. .+.++..+.+.|...+.+.+
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 2 258999998 57899999999999887653
No 229
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=8.4e-17 Score=120.38 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=109.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeE-EEEEEEeCCCcccc----ccchhh---hhcC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERY----HSLAPM---YYRG 82 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~----~~~~~~---~~~~ 82 (200)
..|.+||.|++|||||+++|..... ...+..-++..+..-++...+ ..+.+-|.||.-+- +.+-.. .++.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 3578999999999999999985544 333444344444444443333 33999999995422 222222 3568
Q ss_pred CcEEEEEEeCCCH---HHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCC
Q 029029 83 AAAAIIVYDITNQ---ASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKT 156 (200)
Q Consensus 83 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 156 (200)
++.++||+|++.+ ..|+.++.+..++..+. ..+.|.++|+||+|+.+. ....+..+++...-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999987 78888877777766643 367899999999997532 223346666665544 89999999
Q ss_pred CCCHHHHHHHHHHh
Q 029029 157 ATNVNDIFYEIAKR 170 (200)
Q Consensus 157 ~~~i~~~~~~l~~~ 170 (200)
++++.++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999987654
No 230
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=5.7e-17 Score=122.00 Aligned_cols=159 Identities=19% Similarity=0.163 Sum_probs=109.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc------ccc---cchhhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE------RYH---SLAPMY 79 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~---~~~~~~ 79 (200)
....|+|.|+||+|||||++.+.+.... ..+.+-++-......++.....+|++||||.= ... ....+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE--vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE--VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCc--cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 4568999999999999999999854432 33343344444445556667799999999931 111 111122
Q ss_pred hcCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCC
Q 029029 80 YRGAAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKT 156 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (200)
-.-.++++|++|.+. ..+.+....++..+.... ..|+++|+||+|..+.... +++.......+. ....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeee
Confidence 345789999999985 567777888889988874 3899999999998754433 233333333333 366788888
Q ss_pred CCCHHHHHHHHHHhccc
Q 029029 157 ATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~ 173 (200)
+.+++.+...+.....+
T Consensus 321 ~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 321 GCGLDKLREEVRKTALE 337 (346)
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 88899888777766443
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.4e-16 Score=127.64 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=102.2
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
....+.++|+++|++++|||||+++|++.... .......|.+.......+......+.++||||+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 45567899999999999999999999963110 0111224455555555555566789999999988
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHcC
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQENG 146 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 146 (200)
.+.......+..+|++++|+|..... ..+....+..+... ++| +++++||+|+.+..+. ..+++..+.+..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 77666667778999999999998642 22333444444433 567 7789999998653221 1123444444433
Q ss_pred -----CcEEEecCCCCCC
Q 029029 147 -----LFFMETSAKTATN 159 (200)
Q Consensus 147 -----~~~~~~Sa~~~~~ 159 (200)
++++++||.+|.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCcceEEEcchhhccc
Confidence 6799999999864
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=1.4e-16 Score=128.52 Aligned_cols=153 Identities=17% Similarity=0.200 Sum_probs=106.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCccc--C---------------------------cccCcceeeEEEEEEEECC
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------------------------FQESTIGAAFFSQTLAVND 56 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (200)
...+.++|+++|+.++|||||+.+|+...-. . .....-|.+.......+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 3456899999999999999999998752210 0 0011123444455555666
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHH-------HHHHHHHHHHHhCCCCC-eEEEEEeCcCcc
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE-------RAKKWVQELQAQGNPNM-VMALAGNKADLL 128 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-~~ivv~nK~D~~ 128 (200)
....+.++|+||+++|...+...+..+|++|+|+|..+. .|+ +..+.+..... .++ ++++++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence 778999999999999988888889999999999999873 222 33333333333 345 478899999975
Q ss_pred CCCC------CCHHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q 029029 129 DARK------VTAEEAQAYAQENG-----LFFMETSAKTATNVND 162 (200)
Q Consensus 129 ~~~~------~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 162 (200)
+... ...+++..+++..+ ++++++||.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 2110 01344666666655 5799999999999854
No 233
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=1.6e-16 Score=117.34 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=96.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccC-----------------------cceeeEEEEE-------------EEEC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQES-----------------------TIGAAFFSQT-------------LAVN 55 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~ 55 (200)
||+++|+.++|||||+++|..+.+...... ..|.+..... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997555321110 0011100000 0111
Q ss_pred CeEEEEEEEeCCCccccccchhhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029 56 DATVKFEIWDTAGQERYHSLAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (200)
.....+.++|+||++.+.......+. .+|++++|+|..+... .....++..+... ++|+++++||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 22457999999999887655444443 6899999999876432 2233444544443 5789999999998543221
Q ss_pred C--HHHHHHHHH--------------------------HcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 134 T--AEEAQAYAQ--------------------------ENGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 134 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
. .+.+.+..+ ...+++|.+||.+|.|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 111222221 11248999999999999999887643
No 234
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.72 E-value=1.6e-16 Score=128.32 Aligned_cols=155 Identities=19% Similarity=0.157 Sum_probs=103.6
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcc--cC---------------------------cccCcceeeEEEEEEEEC
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQF--IE---------------------------FQESTIGAAFFSQTLAVN 55 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~ 55 (200)
++..+.++|+++|+.++|||||+.+|+...- .. ......|.+.......++
T Consensus 2 ~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~ 81 (446)
T PTZ00141 2 GKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (446)
T ss_pred CCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc
Confidence 4556789999999999999999999986211 00 001122444444555566
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEeCcCcc
Q 029029 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKADLL 128 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~ 128 (200)
.....+.|+|+||+.+|...+...+..+|++++|+|..+... + .+..+.+...... ++| +++++||+|..
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDK 158 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence 677899999999999888777778899999999999986421 1 1333444444443 455 67899999943
Q ss_pred C--CCCCCH----HHHHHHHHHc-----CCcEEEecCCCCCCHHH
Q 029029 129 D--ARKVTA----EEAQAYAQEN-----GLFFMETSAKTATNVND 162 (200)
Q Consensus 129 ~--~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 162 (200)
. ..+... +++..+.... +++++++|+.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 111111 2333333333 35799999999999864
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=2.9e-16 Score=119.47 Aligned_cols=144 Identities=14% Similarity=0.191 Sum_probs=93.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCc----------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--- 74 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--- 74 (200)
...++|+++|.+|+|||||+|+|++...... ..++.+.......+..++....+.+|||||......
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3578999999999999999999998766433 223333444445555567778999999999432110
Q ss_pred c-----------------------hhhhhc--CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 75 L-----------------------APMYYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 75 ~-----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
. ....+. .+|+++|+++.+... +... ...++.+.. .+|+++|+||+|+.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l 156 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTL 156 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcC
Confidence 0 101222 467888888876421 1111 233344432 57899999999986
Q ss_pred CCCC--CCHHHHHHHHHHcCCcEEEecCCC
Q 029029 129 DARK--VTAEEAQAYAQENGLFFMETSAKT 156 (200)
Q Consensus 129 ~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (200)
...+ .....+.+.+..+++++|......
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 5322 234556777788999998776543
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=99.72 E-value=3.7e-16 Score=124.73 Aligned_cols=164 Identities=14% Similarity=0.173 Sum_probs=109.8
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
.+..+.++|+++|+.++|||||+++|++.... .......|.+.......+......+.++||||+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 45577899999999999999999999863110 0011133455555555555556789999999998
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCcCccCCCCC---CHHHHHHHHHHc-
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKV---TAEEAQAYAQEN- 145 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~- 145 (200)
++.......+..+|++++|+|..+.. .....+++..+... ++|.+ +++||+|+.+.... ...++..+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 77666666778999999999998642 22333444444443 56765 68999998642211 112344444433
Q ss_pred ----CCcEEEecCCCCC----------CHHHHHHHHHHhcc
Q 029029 146 ----GLFFMETSAKTAT----------NVNDIFYEIAKRLP 172 (200)
Q Consensus 146 ----~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 172 (200)
+++++++||.++. ++..+++.|.+.+.
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 3689999999875 46777777777554
No 237
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.71 E-value=2.8e-16 Score=114.20 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=104.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------c---hhhh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------L---APMY 79 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~ 79 (200)
++|+++|.+|+|||||+|+|++...........+.+...........+..+.++||||...... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999997654322211222222222222222446899999999654321 1 1112
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCC------CHHHHHHHHHHcCCcEEE
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKV------TAEEAQAYAQENGLFFME 151 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~ 151 (200)
..++|++++|++..+. +. .....++.+.... ....++++++|+.|......+ ....++.+.+..+-.++.
T Consensus 81 ~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 3578999999998862 21 1122233333321 123468889999986543211 123456666666666655
Q ss_pred ec-----CCCCCCHHHHHHHHHHhccccCCCCCCCC
Q 029029 152 TS-----AKTATNVNDIFYEIAKRLPRVQPAPNPSG 182 (200)
Q Consensus 152 ~S-----a~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 182 (200)
++ +..+.+++++++.+.+.+.+..+.++..+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 54 45678999999999999998777666543
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=1.8e-16 Score=126.87 Aligned_cols=149 Identities=24% Similarity=0.274 Sum_probs=95.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCc-------------c------------------cCcceeeEEEEEEEECCeEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF-------------Q------------------ESTIGAAFFSQTLAVNDATV 59 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~~ 59 (200)
++|+++|+.++|||||+++|+...-.-. . +..-|.+.......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999975321100 0 00112333333444444567
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH----
Q 029029 60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA---- 135 (200)
Q Consensus 60 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~---- 135 (200)
.+.++||||++.+.......+..+|++++|+|...... .+..+.+..+.... ..++++++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 89999999998887666677889999999999986422 12222223333332 235889999999864322111
Q ss_pred HHHHHHHHHcC---CcEEEecCCCCCCHHH
Q 029029 136 EEAQAYAQENG---LFFMETSAKTATNVND 162 (200)
Q Consensus 136 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 162 (200)
++...+.+..+ ++++++||.+|.|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12222333333 4699999999999985
No 239
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=5.2e-16 Score=127.31 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=83.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcc-cCc-------------------ccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 67 (200)
.+..+|+|+|+.++|||||.++|+...- ... ....-|.++......+...++.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999974111 000 01112344444445555667889999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
|+..+......++..+|++|+|+|..+... .....++..... .++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 999888777778899999999999987421 123344443333 4789999999999753
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=2.3e-16 Score=128.23 Aligned_cols=155 Identities=21% Similarity=0.224 Sum_probs=98.8
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCc-------------ccC------------------cceeeEEEEEEEE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-------------QES------------------TIGAAFFSQTLAV 54 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~ 54 (200)
.....++|+++|+.++|||||+++|+...-.-. ... .-|.+.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 346689999999999999999999986432100 000 1123333334444
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (200)
Q Consensus 55 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~ 134 (200)
......+.|+||||++.+.......+..+|++++|+|..+... ....+.+....... ..++++++||+|+.+.....
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHHHHHHhC--CCceEEEEEeeccccchhHH
Confidence 5556789999999998876555566789999999999976421 11112222222222 24788999999986432211
Q ss_pred HHH----HHHHHHHc----CCcEEEecCCCCCCHHHH
Q 029029 135 AEE----AQAYAQEN----GLFFMETSAKTATNVNDI 163 (200)
Q Consensus 135 ~~~----~~~~~~~~----~~~~~~~Sa~~~~~i~~~ 163 (200)
.+. +..+.+.. ..+++++||++|.|++++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 222 22223332 367999999999999864
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=6.1e-16 Score=125.46 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=100.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcc------cC--------cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF------IE--------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 72 (200)
..+.++|+++|+.++|||||+++|++... .. ......|.+.......++.....+.++|+||++++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45689999999999999999999995211 00 11222344444444445555678999999999988
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHc---
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQEN--- 145 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~--- 145 (200)
.......+..+|++++|+|..+.. .....+++..+... ++| +++++||+|+.+..+. ..+++..+.+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 777777778999999999988642 22334445544443 566 7789999998653221 112344444443
Q ss_pred --CCcEEEecCCCCC
Q 029029 146 --GLFFMETSAKTAT 158 (200)
Q Consensus 146 --~~~~~~~Sa~~~~ 158 (200)
+++++++|+.++.
T Consensus 234 ~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 234 GDDIPIISGSALLAL 248 (478)
T ss_pred cCcceEEEEEccccc
Confidence 4679999998875
No 242
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=1e-15 Score=116.00 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=80.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCccc-Ccc-------------------cCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQ-------------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
.+|+++|++|+|||||+++|+...-. ... ....+.+.......++..+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999852110 000 0011334445555666677899999999998
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
++.......+..+|++|+|+|.++... .....++..... .++|+++++||+|+.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 877766777899999999999987522 122333333322 4689999999999754
No 243
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=9.1e-16 Score=123.79 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=105.6
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhC------ccc--------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKG------QFI--------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 72 (200)
..+.++|+++|+.++|||||+++|.+. ... ...+...|.+.......++..+..+.|+||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456899999999999999999999731 100 001122455555556666666778999999999877
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCCCH---HHHHHHHHHc---
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVTA---EEAQAYAQEN--- 145 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~--- 145 (200)
-......+..+|++++|+|..+.. ..+..+.+..+... ++| +++++||+|+.+...... +++.++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 665556667899999999987642 22233444444443 567 578899999865322111 1222333322
Q ss_pred --CCcEEEecCC---CCCC-------HHHHHHHHHHhcc
Q 029029 146 --GLFFMETSAK---TATN-------VNDIFYEIAKRLP 172 (200)
Q Consensus 146 --~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~~ 172 (200)
.++++++|+. ++.| +.++++.+.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3678888875 4555 6788888877664
No 244
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=3.1e-16 Score=118.86 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=79.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCccc-C---------------cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFI-E---------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 75 (200)
+|+++|++++|||||+++|+...-. . ......|.+.......+...+..+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999752110 0 01112234444444444445678999999999888878
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+...+..+|++|+|+|..+... ......+..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8889999999999999987422 122333444433 4678999999999864
No 245
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.68 E-value=5.5e-16 Score=114.13 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=77.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCc--c------------cCcceeeEEE--EEEEEC--------CeEEEEEEEeCC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--Q------------ESTIGAAFFS--QTLAVN--------DATVKFEIWDTA 67 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~--~------------~~~~~~~~~~--~~~~~~--------~~~~~~~i~D~~ 67 (200)
+|+++|+.++|||||+.+|+....... . ...-|.+... ...... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999986432100 0 0001111111 122222 347889999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
|+..+......++..+|++++|+|..+...... ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 999999888999999999999999987643332 223333322 357899999999975
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=1.7e-16 Score=120.69 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=100.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCc-c---c--C----------cceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF-Q---E--S----------TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~-~---~--~----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 75 (200)
+|+++|++|+|||||+++|+....... . . . ..+.+.......+...++.+++|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999985321100 0 0 0 0011222222333334578999999999887777
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEE--Eec
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFM--ETS 153 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~S 153 (200)
+...+..+|++++|+|.++...... ...+..+.. .++|.++++||+|+.... ..+....+....+.+++ .+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence 7888899999999999987543322 222233332 468999999999986431 12233444444555544 445
Q ss_pred CCCCCCHHHHHHHHHHhcccc
Q 029029 154 AKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~ 174 (200)
..++.++..+.+.+..+....
T Consensus 155 ~~~~~~~~~~vd~~~~~~~~~ 175 (268)
T cd04170 155 IGEGDDFKGVVDLLTEKAYIY 175 (268)
T ss_pred ccCCCceeEEEEcccCEEEEc
Confidence 677778777777666655544
No 247
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.67 E-value=1.2e-15 Score=123.02 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=107.2
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCccc---CcccC--c--ceeeEEEE-----------EEEECC-----------
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQES--T--IGAAFFSQ-----------TLAVND----------- 56 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~---~~~~~--~--~~~~~~~~-----------~~~~~~----------- 56 (200)
..+..++|+++|+...|||||+.+|++.... ++... + .|...... ....+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 4578999999999999999999999953221 11100 1 11111000 000000
Q ss_pred -----eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 57 -----ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 57 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
....+.|+|+||++.+...+...+..+|++++|+|..++....+..+.+....... -.++++++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence 02468999999999887777777889999999999987421222233343333332 24689999999986432
Q ss_pred CC--CHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 132 KV--TAEEAQAYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 132 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
.. ..++++.+.+. .+.+++++||++|.|++.+++.|.+.+...
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 21 12233333322 356899999999999999999999866543
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=1.3e-15 Score=128.42 Aligned_cols=153 Identities=24% Similarity=0.231 Sum_probs=97.4
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCc-------------cc------------------CcceeeEEEEEEEEC
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-------------QE------------------STIGAAFFSQTLAVN 55 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~~ 55 (200)
....++|+++|++++|||||+++|+...-.-. .. ..-|.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 45678999999999999999999986332100 00 001223333333444
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH
Q 029029 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~ 135 (200)
..+..+.|+||||++.+.......+..+|++++|+|...... ....+.+..+... ...++++++||+|+.+......
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence 456678999999998776555566789999999999976421 1222223333333 2257889999999864221111
Q ss_pred ----HHHHHHHHHcC---CcEEEecCCCCCCHHH
Q 029029 136 ----EEAQAYAQENG---LFFMETSAKTATNVND 162 (200)
Q Consensus 136 ----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 162 (200)
.++..+.+..+ ++++++||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22233334444 4689999999999874
No 249
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=4.2e-16 Score=122.70 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=120.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-cccch--------hh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLA--------PM 78 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~--------~~ 78 (200)
+..++|+++|+||+|||||+|.|. +......+|..|++.......++-.++++.+.||+|..+ -.... ..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~-~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALS-REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHh-cCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 556899999999999999999999 666777889999999999988888899999999999654 21111 12
Q ss_pred hhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHh------CCCCCeEEEEEeCcCccCC-CCCCHHHHHHHHH-Hc-CC
Q 029029 79 YYRGAAAAIIVYDITN--QASFERAKKWVQELQAQ------GNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQ-EN-GL 147 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~------~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~-~~-~~ 147 (200)
.+..+|++++|+|+.. -++-..+.+.+...... .....+++++.||.|+... .+........... .+ ..
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 3678999999999943 22222223334333221 1245789999999999764 2222211222222 11 12
Q ss_pred c-EEEecCCCCCCHHHHHHHHHHhccccCCCCC
Q 029029 148 F-FMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 148 ~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 179 (200)
+ ..++|++++++++.+.+.+.+.+....+.+.
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~ 457 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVVSPH 457 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhcCCC
Confidence 3 4569999999999999999998887766433
No 250
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.9e-15 Score=120.51 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=112.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC---eEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND---ATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
++.=|.++|+..-|||||+..+-...... ...-|.+.+..-..+.- ..-.+.|+||||++.|..+...-..-+|+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 45568899999999999999997544432 23334444443333332 34579999999999999888888888999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC---------cEEEecCCC
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL---------FFMETSAKT 156 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~ 156 (200)
+|+|++..+.-- .+. .+.+......+.|+++++||+|..+ ...+....-.+.+++ .++++||++
T Consensus 82 aILVVa~dDGv~-pQT---iEAI~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 82 AILVVAADDGVM-PQT---IEAINHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEEEccCCcc-hhH---HHHHHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 999999997311 111 2333333346899999999999864 344444444445554 589999999
Q ss_pred CCCHHHHHHHHHHhcccc
Q 029029 157 ATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (200)
|+|++++++.+.-.....
T Consensus 155 g~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 155 GEGIDELLELILLLAEVL 172 (509)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999887666554
No 251
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=9e-16 Score=102.29 Aligned_cols=104 Identities=22% Similarity=0.271 Sum_probs=66.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEE--EEEEECCeEEEEEEEeCCCcccc----------ccchhhh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERY----------HSLAPMY 79 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~ 79 (200)
+|+|+|.+|+|||||+|+|++... .......+.+... .....++ ..+.++||||.... ..... .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLE-Q 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence 699999999999999999996432 1122222222222 3333444 45679999996421 11222 3
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK 124 (200)
+..+|++++|+|.+++.. +.....+..+. .++|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 478999999999877422 22333444442 57899999998
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=4.1e-15 Score=122.12 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=83.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhC-cccCc-------------------ccCcceeeEEEEEEEECCeEEEEEEEeC
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKG-QFIEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDT 66 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 66 (200)
..+..+|+|+|++++|||||+++|+.. ..... .....|.++......++..+..+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 356779999999999999999998641 11110 0111244555555666667889999999
Q ss_pred CCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
||+..+.......+..+|++|+|+|..+.. ......+++.... .++|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 999888776677889999999999998741 1223344443332 468999999999974
No 253
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.6e-15 Score=111.85 Aligned_cols=164 Identities=16% Similarity=0.276 Sum_probs=108.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMY 79 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~ 79 (200)
...+++|++.|.+|+|||||||+|+.+...+...-..+++...... .......+.+||+||.++ ++.....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~-~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR-LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-hhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 3568999999999999999999999655443221222222211111 122336799999999654 56667778
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC-------CCCHHHHHHHHHH--------
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR-------KVTAEEAQAYAQE-------- 144 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~-------~~~~~~~~~~~~~-------- 144 (200)
+...|+++++++..++.- ..-.+++..+.... .+.++++++|.+|...+- ..+...++++.+.
T Consensus 115 l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccc-cCCHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999988742 22245555555542 347899999999986541 1111112222111
Q ss_pred --cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 145 --NGLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 145 --~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
.--|++..+...++|++++...+++.+..
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 11367888889999999999999998873
No 254
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=5.4e-15 Score=125.79 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=82.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCccc-Cc------------cc---CcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EF------------QE---STIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~------------~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
+...+|+|+|+.++|||||+++|+..... .. .. ...+.+.......+......+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 35679999999999999999999853210 00 00 0112222222333334567899999999998
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+...+..++..+|++++|+|.++.........| ..+.. .++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 888888899999999999999886554433333 33333 3689999999999864
No 255
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=1.1e-14 Score=112.50 Aligned_cols=158 Identities=22% Similarity=0.243 Sum_probs=96.4
Q ss_pred EEEECCCCCCHHHHHHHHHhCcccC------cccCcceeeEEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 029029 13 LVLLGDVGAGKSSLVLRFVKGQFIE------FQESTIGAAFFSQT---------------LAVND-ATVKFEIWDTAGQ- 69 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~G~- 69 (200)
|+++|.+++|||||+++|++..... ...|..|..+.... ...++ ....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999765421 12233332222110 00122 3467999999997
Q ss_pred ---cccccchhh---hhcCCcEEEEEEeCCC---------------H-HHHHH----HHHH-HH-------HH-------
Q 029029 70 ---ERYHSLAPM---YYRGAAAAIIVYDITN---------------Q-ASFER----AKKW-VQ-------EL------- 108 (200)
Q Consensus 70 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~----~~~~-~~-------~i------- 108 (200)
+....+... .++.+|++++|+|... | ..++. +..| +. .+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333434334 3789999999999973 1 11111 1111 00 00
Q ss_pred ------------H--------------Hh---------------------CCCCCeEEEEEeCcCccCCCCCCHHHHHHH
Q 029029 109 ------------Q--------------AQ---------------------GNPNMVMALAGNKADLLDARKVTAEEAQAY 141 (200)
Q Consensus 109 ------------~--------------~~---------------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~ 141 (200)
. .. ....+|+++++||+|+..... ....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~----~~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN----NISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH----HHHHH
Confidence 0 00 013579999999999743221 11122
Q ss_pred HHH-cCCcEEEecCCCCCCHHHHHH-HHHHhcccc
Q 029029 142 AQE-NGLFFMETSAKTATNVNDIFY-EIAKRLPRV 174 (200)
Q Consensus 142 ~~~-~~~~~~~~Sa~~~~~i~~~~~-~l~~~~~~~ 174 (200)
... ....++.+||+.+.+++++.+ .+.+.+.+.
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 222 245699999999999999998 688888654
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.63 E-value=1.5e-15 Score=107.43 Aligned_cols=116 Identities=23% Similarity=0.358 Sum_probs=72.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhh---hhcCCcE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPM---YYRGAAA 85 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~ 85 (200)
.-.|+++|+.|||||+|...|..+...+...+... ...... ......+.++|+||+.+.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~----n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN----NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSE----EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC----CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 45789999999999999999998865443322211 111111 234457999999999988764444 4788999
Q ss_pred EEEEEeCCC-HHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCcCccC
Q 029029 86 AIIVYDITN-QASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLD 129 (200)
Q Consensus 86 ~i~v~d~~~-~~s~~~~~~~~~~i~~~---~~~~~~~ivv~nK~D~~~ 129 (200)
+|||+|++. ......+.+++-.+... .....|+++++||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999985 33455555555444332 246889999999999865
No 257
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=6.5e-15 Score=117.32 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=119.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCccc--C-----------cccCcceeeEEEEEEEE---CCeEEEEEEEeCCCccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--E-----------FQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQER 71 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~ 71 (200)
++-.++.||-+..-|||||..+|+...-. . .....-|.+....+..+ ++..+.+.++||||+-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 44568999999999999999999863220 0 11122344444443333 35669999999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHHHHHHHcCCcEE
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQENGLFFM 150 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~ 150 (200)
|.......+..++++|+|+|.++.-.-..+..++..+. .+..+|.|+||+|+...+. ....++...+.....+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99998889999999999999998644444455544443 3567999999999865431 112234444444455789
Q ss_pred EecCCCCCCHHHHHHHHHHhccccCCC
Q 029029 151 ETSAKTATNVNDIFYEIAKRLPRVQPA 177 (200)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (200)
.+||++|.|+.++++++++.+......
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999999876553
No 258
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.63 E-value=5.4e-15 Score=111.97 Aligned_cols=162 Identities=20% Similarity=0.131 Sum_probs=104.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCcccccc----c---hhhhhcCC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHS----L---APMYYRGA 83 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~ 83 (200)
-|.+||.|++|||||++.+.+....--..+. ++..++--.+. .....|.+=|.||..+-.. + .-..+..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpF--TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPF--TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCcc--ccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 4679999999999999999865543222222 22333222221 3445699999999532111 1 11235678
Q ss_pred cEEEEEEeCCCHH---HHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEE-ecCCCC
Q 029029 84 AAAIIVYDITNQA---SFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFME-TSAKTA 157 (200)
Q Consensus 84 d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~ 157 (200)
.+++.|+|++..+ ..+.......++..+. -.++|.++|+||+|+....+........+.+..+...+. +||.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999998533 3444444445554442 267899999999997554333333344444444443222 999999
Q ss_pred CCHHHHHHHHHHhccccC
Q 029029 158 TNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~ 175 (200)
.|++++...+.+.+....
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999998888775
No 259
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.3e-15 Score=103.72 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=114.7
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.-|++++|..|+|||||++.|-...... ..|+..-+ +... ...+..|+-+|.+|+...+..|..++..+|++
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT--SE~l--~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEEL--SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC--hHHh--eecCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 4567899999999999999999998654432 22332211 1122 23457899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH---Hc-----------C---Cc
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ---EN-----------G---LF 148 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~---~~-----------~---~~ 148 (200)
++.+|..+.+.|.+.+..++.+.... -...|+++.+||+|.... ...++.+.... .. + +.
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~e 169 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLE 169 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEE
Confidence 99999999999999887777766543 368999999999997654 34444333221 11 1 13
Q ss_pred EEEecCCCCCCHHHHHHHHHHh
Q 029029 149 FMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
+|.||...+.+--+.|.|+...
T Consensus 170 vfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 170 VFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEEccCccceeeeehhhh
Confidence 6788888888877778777654
No 260
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=6e-15 Score=114.31 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=106.7
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcc--c---------------------------CcccCcceeeEEEEEEEEC
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQF--I---------------------------EFQESTIGAAFFSQTLAVN 55 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~ 55 (200)
....+.++++|+|+..+|||||+-+|+...- + ......-|.+.......++
T Consensus 2 ~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 2 ASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 3456789999999999999999999986321 0 0111223566667777777
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHH------HHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF------ERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
...+.++++|+||+..+-.-+..-+.+||+.|+|+|.++.+.- .+.++..-..+..+ -..+||++||+|..+
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~ 159 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVS 159 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccc
Confidence 7888999999999888777777778899999999999976311 11222222222222 345888999999876
Q ss_pred CCCCCHHH----HHHHHHHcC-----CcEEEecCCCCCCHHH
Q 029029 130 ARKVTAEE----AQAYAQENG-----LFFMETSAKTATNVND 162 (200)
Q Consensus 130 ~~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 162 (200)
-.+-.+++ +..+.+..+ ++|+++|+..|.|+.+
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 33322322 222333333 5699999999999876
No 261
>PRK09866 hypothetical protein; Provisional
Probab=99.61 E-value=6e-14 Score=114.91 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=73.8
Q ss_pred EEEEEEeCCCcccc-----ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029 59 VKFEIWDTAGQERY-----HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (200)
Q Consensus 59 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (200)
.++.|+||||.+.. ...+...+..+|++++|+|.....+... ...++.+...+ ...|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 35899999997542 2234446889999999999986422222 22334444432 23599999999998643333
Q ss_pred CHHHHHHHHH----HcCC---cEEEecCCCCCCHHHHHHHHHHh
Q 029029 134 TAEEAQAYAQ----ENGL---FFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 134 ~~~~~~~~~~----~~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
..+.+..+.. ..+. .+|++||+.|.|++++++.|...
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 3444545432 2222 59999999999999999998873
No 262
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.60 E-value=4.7e-14 Score=112.13 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=48.0
Q ss_pred CCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH-HHHHHHHhccccCCCCCCCCceeccCC
Q 029029 115 NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND-IFYEIAKRLPRVQPAPNPSGMVLMDRP 189 (200)
Q Consensus 115 ~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (200)
.+|+++|+||.|....+. ....+.+.....++++||..+.++++ +++.+.+.+... +.+++.+.+ ++++
T Consensus 217 ~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~-p~~~~~d~l-td~~ 286 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGD-SDFEILGEL-SEKQ 286 (396)
T ss_pred CCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCC-CccCccccC-CHHH
Confidence 589999999999643211 12222222345689999999999999 788888877665 457777654 4544
No 263
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=6.7e-14 Score=119.00 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=80.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCccc-C---ccc------------CcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-E---FQE------------STIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~---~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
.+-.+|+|+|+.++|||||+++|+..... . ... ...|++.......+...+..+.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 44678999999999999999999752110 0 000 1223333333344434567899999999988
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+...+...+..+|++|+|+|..+.... .....+..+.. .++|+++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~-qt~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEP-QSETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 777777888999999999999875322 12233333333 3578999999999864
No 264
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.1e-14 Score=107.84 Aligned_cols=191 Identities=14% Similarity=0.208 Sum_probs=133.1
Q ss_pred CCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCccc----Ccce--eeE----------------EEEEEEEC----
Q 029029 2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIG--AAF----------------FSQTLAVN---- 55 (200)
Q Consensus 2 ~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~----~~~~--~~~----------------~~~~~~~~---- 55 (200)
+.....+.+++|.++|+..-|||||..+|.+ -+....+ .-+. ..| +.......
T Consensus 2 ~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~ 80 (415)
T COG5257 2 ADPKHIQPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA 80 (415)
T ss_pred CccccCCcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence 3334447899999999999999999999985 3321111 0000 000 00000000
Q ss_pred --CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-
Q 029029 56 --DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK- 132 (200)
Q Consensus 56 --~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~- 132 (200)
.--..+.|.|.||++-+-..+-+-..-.|++++|++.+++....+..+.+..+.-.. -+.++++-||+|+...+.
T Consensus 81 ~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 81 ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHH
Confidence 123469999999998776666555666899999999998766556666666665553 345899999999976432
Q ss_pred -CCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhccccCCCCCCCCceeccCCCCCCCC
Q 029029 133 -VTAEEAQAYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTAS 195 (200)
Q Consensus 133 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (200)
-+++++.+|.+. .+.|++++||..+.||+-+++.|.+.+....-+.......+..|+.+-+.+
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkP 225 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKP 225 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCC
Confidence 245556666553 467999999999999999999999999998888777777777777766554
No 265
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.1e-13 Score=110.56 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=111.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEE--EEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.++.-|-|.|+..-|||||+..|-..... ....-|.+... ....++ .+..++|+||||+..|..+...-..-+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVA--AGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCcee--hhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 35566889999999999999999754332 22233333333 333444 44789999999999999888888888999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC---------CcEEEecCCC
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG---------LFFMETSAKT 156 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 156 (200)
+++|+...|.- ..+. .+.+......+.|+++.+||+|..+ .+.+...+-...++ +.++++||++
T Consensus 228 vVLVVAadDGV-mpQT---~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 228 VVLVVAADDGV-MPQT---LEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEEEccCCc-cHhH---HHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 99999988731 1111 2334444457899999999999654 44555544444444 3689999999
Q ss_pred CCCHHHHHHHHHHhcccc
Q 029029 157 ATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (200)
|.|++.+-+.+.-+..-+
T Consensus 301 g~nl~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEVM 318 (683)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 999999999877655444
No 266
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=2e-13 Score=107.39 Aligned_cols=164 Identities=21% Similarity=0.228 Sum_probs=118.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccC-------------cccCcceeeEEEE--EEEE---CCeEEEEEEEeCCCcc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE-------------FQESTIGAAFFSQ--TLAV---NDATVKFEIWDTAGQE 70 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~-------------~~~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~G~~ 70 (200)
+-.+..++-+-.-|||||..+|+.....- .....-|.+.... ...+ ++..+.+.++||||+-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 34567888999999999999997532210 0111123333332 2222 4578999999999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH-HHHHHHcCCc-
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA-QAYAQENGLF- 148 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~- 148 (200)
++.......+..+.+.++++|.+..-.-..+...+..+.. +.-++.|+||+||... +.+.. .++-...|++
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~A---dpervk~eIe~~iGid~ 160 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAA---DPERVKQEIEDIIGIDA 160 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCC---CHHHHHHHHHHHhCCCc
Confidence 8888888888899999999999987555666666666644 4568999999999653 33333 3333445663
Q ss_pred --EEEecCCCCCCHHHHHHHHHHhccccCCCCC
Q 029029 149 --FMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 149 --~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 179 (200)
.+.+||++|.||+++++.+++++....++..
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~ 193 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPD 193 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCCCCCCCCC
Confidence 7899999999999999999999988776544
No 267
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.56 E-value=1.5e-13 Score=100.13 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=111.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhhh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYY 80 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 80 (200)
....+|+++|.|++|||||+..++. .... .....-++.......+...+..+++.|.||.-. ......+..
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~-T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITS-THSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhc-chhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe
Confidence 4578999999999999999999984 3322 222222444455555566677899999999432 123344567
Q ss_pred cCCcEEEEEEeCCCHHHHHH-HHHHHHHH---------------------------------------------------
Q 029029 81 RGAAAAIIVYDITNQASFER-AKKWVQEL--------------------------------------------------- 108 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~-~~~~~~~i--------------------------------------------------- 108 (200)
+.||++++|+|.+..+.... +.+.++.+
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev 217 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV 217 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence 88999999999987554432 23333311
Q ss_pred --------------HHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 109 --------------QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 109 --------------~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
...+...++++.|-||+|. ++.++..+++...+. +.+|+.-..|++.+++.+++.+.-.
T Consensus 218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred EEecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhceE
Confidence 1112236778899999994 677888888888777 5577888899999999999988764
Q ss_pred C
Q 029029 175 Q 175 (200)
Q Consensus 175 ~ 175 (200)
+
T Consensus 291 r 291 (364)
T KOG1486|consen 291 R 291 (364)
T ss_pred E
Confidence 3
No 268
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.6e-14 Score=99.78 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=102.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc---CCcEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR---GAAAA 86 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~ 86 (200)
.-.|+++|+.+||||+|.-.|..+.+...+ +...++...+......+.++|.||+.+.+.....++. .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-----tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV-----TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCee-----eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 357999999999999999999877443222 2233444444333445899999999998877777776 79999
Q ss_pred EEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCC------CCHHHHHHHH--------------
Q 029029 87 IIVYDITNQ-ASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARK------VTAEEAQAYA-------------- 142 (200)
Q Consensus 87 i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~------~~~~~~~~~~-------------- 142 (200)
|||+|+..- --...+.+++-.+.... ...+|+++..||.|+.-... ....++..+.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 999998742 12333444444333322 46788999999999853211 0011111110
Q ss_pred ------------------HHcCCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029 143 ------------------QENGLFFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 143 ------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
....+.|.+.|++++ +++++-+||.+.+
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 012245888999998 8999999988753
No 269
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=7.4e-14 Score=118.78 Aligned_cols=144 Identities=16% Similarity=0.055 Sum_probs=92.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccC----ccc------------CcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE----FQE------------STIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
.+-.+|+|+|+.++|||||+++|+...-.. ... ...|++.......+...+..+.+|||||+..
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 345699999999999999999997422110 000 1123444444444444567899999999988
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC----
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL---- 147 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---- 147 (200)
+...+...+..+|++++|+|..+...... ..++..+.. .++|+++++||+|+.... .......+....+.
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANAVP 161 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCcee
Confidence 87777888999999999999987533322 233333333 368899999999986532 12223333333332
Q ss_pred cEEEecCCCC
Q 029029 148 FFMETSAKTA 157 (200)
Q Consensus 148 ~~~~~Sa~~~ 157 (200)
..+++|+..+
T Consensus 162 ~~ipis~~~~ 171 (689)
T TIGR00484 162 IQLPIGAEDN 171 (689)
T ss_pred EEeccccCCC
Confidence 1456666554
No 270
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=1.8e-14 Score=113.79 Aligned_cols=166 Identities=15% Similarity=0.119 Sum_probs=118.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc----cc--ch---hh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HS--LA---PM 78 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~--~~---~~ 78 (200)
...-+++|+|.|++|||||++.+..... ...+..-++.......++.....++++||||.-.. +. .+ ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 4566889999999999999998875443 33444434444444455666788999999994211 11 11 12
Q ss_pred hhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH---HHHHHHHcCCcEEEec
Q 029029 79 YYRGAAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE---AQAYAQENGLFFMETS 153 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~S 153 (200)
..+--.+++|+.|++. ..+......++..+... ..++|+|+|+||+|+...+.++.+. +..+....+++++++|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 2334458999999996 45666777788888776 3678999999999998877776654 3333444558999999
Q ss_pred CCCCCCHHHHHHHHHHhccccCC
Q 029029 154 AKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
+.+.+|+-++....++.+...+-
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred ccchhceeeHHHHHHHHHHHHHH
Confidence 99999999988888877766543
No 271
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.54 E-value=4.1e-14 Score=103.99 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=99.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCc--ceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------h---h
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------A---P 77 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~---~ 77 (200)
++|+|+|.+||||||++|.+++.......... ............++ ..+.++||||..+.... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987765433211 12223333334444 67899999995322111 1 1
Q ss_pred hhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC-------HHHHHHHHHHcCCc
Q 029029 78 MYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-------AEEAQAYAQENGLF 148 (200)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 148 (200)
....+.|++++|+.... -+.. ...+++..+.... ....++|+.|..|......+. ...++.+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 12457899999999883 2221 2223344333321 234588888888865543311 12345566667778
Q ss_pred EEEecCC------CCCCHHHHHHHHHHhccccCCCCCCCC
Q 029029 149 FMETSAK------TATNVNDIFYEIAKRLPRVQPAPNPSG 182 (200)
Q Consensus 149 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~~~~~~~~~ 182 (200)
|+.++.+ ....+.++++.+-+.+.+..+.++...
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~ 196 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNE 196 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-H
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChH
Confidence 8888776 346789999999998888887776554
No 272
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=9e-13 Score=112.17 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=78.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcc--cC--ccc------------CcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IE--FQE------------STIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
.+-.+|+|+|++++|||||+++|+...- .. ... ...|.+.......+...+..+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3456999999999999999999974111 00 000 1223444443344434467899999999887
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
+.......+..+|++|+|+|....-... ....+..+.. .++|.++++||+|+.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~~---~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQADK---YKVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHHH---cCCCEEEEEECCCCC
Confidence 7666666788999999999987642222 2233334433 357889999999985
No 273
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=6.2e-13 Score=101.30 Aligned_cols=127 Identities=11% Similarity=0.104 Sum_probs=73.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-------hhhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APMY 79 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~ 79 (200)
....++|+++|.+|+||||++|+|++..... .+...+.+...........+..+.++||||....... ...+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~-vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIAT-VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 4568999999999999999999999655321 1122222222222222224578999999996543211 1111
Q ss_pred h--cCCcEEEEEEeCCC--HHHH-HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH
Q 029029 80 Y--RGAAAAIIVYDITN--QASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135 (200)
Q Consensus 80 ~--~~~d~~i~v~d~~~--~~s~-~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~ 135 (200)
+ ...|+++||..++. .... ..+.+.+..+... ....++++++|+.|.......+.
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~iw~~~IVVfTh~d~~~pd~~~~ 173 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-DIWRKSLVVLTHAQFSPPDGLEY 173 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-hhhccEEEEEECCccCCCCCCCH
Confidence 1 26899999965542 1111 1222333333221 23356899999999765444443
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.50 E-value=1e-13 Score=90.18 Aligned_cols=136 Identities=20% Similarity=0.195 Sum_probs=91.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhhhhcCCcEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMYYRGAAAAI 87 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~~~d~~i 87 (200)
|++++|..|+|||||.+.|-+...- +..+..+++... -.+||||.-- +..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999754332 222222222111 1359999532 2222233457899999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 166 (200)
+|-..+++++.- -..+... ...|+|-+++|.|+.++ .+.+..+.+...-|. ++|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f-----~p~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRF-----PPGFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccC-----Ccccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999875521 1111111 24569999999999864 345567777777776 6999999999999999998
Q ss_pred HHH
Q 029029 167 IAK 169 (200)
Q Consensus 167 l~~ 169 (200)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 765
No 275
>PRK12740 elongation factor G; Reviewed
Probab=99.49 E-value=7.1e-13 Score=112.75 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=74.8
Q ss_pred ECCCCCCHHHHHHHHHhCccc--C--cc------------cCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q 029029 16 LGDVGAGKSSLVLRFVKGQFI--E--FQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 79 (200)
Q Consensus 16 vG~~~sGKSsli~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 79 (200)
+|+.++|||||+++|+...-. . .. ....|.+.......+...++.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999653211 0 00 0012333333333444456789999999998877777788
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+..+|++++|+|.+........ ..+..+.. .++|+++++||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8999999999999876444332 22233332 4689999999999753
No 276
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.48 E-value=1.7e-12 Score=97.88 Aligned_cols=164 Identities=18% Similarity=0.296 Sum_probs=113.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE--CCeEEEEEEEeCCCccccccchhhhhcCC-
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV--NDATVKFEIWDTAGQERYHSLAPMYYRGA- 83 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~- 83 (200)
-...-+|+|+|..++||||||.+|.+... ..+-.|..|....... .+.-.++.+|-.-|.-.+..+..+.+...
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats 125 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATS 125 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccC
Confidence 34567899999999999999999986442 3334444444433333 22345688888888766666665554432
Q ss_pred ---cEEEEEEeCCCHHH-HHHHHHHHHHHHHh------------------------------------------------
Q 029029 84 ---AAAIIVYDITNQAS-FERAKKWVQELQAQ------------------------------------------------ 111 (200)
Q Consensus 84 ---d~~i~v~d~~~~~s-~~~~~~~~~~i~~~------------------------------------------------ 111 (200)
.++|++.|+++|.. ++.+++|...+..+
T Consensus 126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d 205 (473)
T KOG3905|consen 126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD 205 (473)
T ss_pred ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence 47899999999854 45567776532211
Q ss_pred -------------CCCCCeEEEEEeCcCccC-------CCCCCH----HHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 112 -------------GNPNMVMALAGNKADLLD-------ARKVTA----EEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 112 -------------~~~~~~~ivv~nK~D~~~-------~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
..-++|++||++|+|... .+.... ..++++|..+|..++.+|+++..|++-+..+|
T Consensus 206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence 011789999999999832 111111 23788888999999999999999999999999
Q ss_pred HHhccc
Q 029029 168 AKRLPR 173 (200)
Q Consensus 168 ~~~~~~ 173 (200)
..++.-
T Consensus 286 vhr~yG 291 (473)
T KOG3905|consen 286 VHRSYG 291 (473)
T ss_pred HHHhcC
Confidence 987764
No 277
>PRK13768 GTPase; Provisional
Probab=99.48 E-value=4.5e-13 Score=100.92 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=70.2
Q ss_pred EEEEEeCCCcccc---ccchhhhh---cC--CcEEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 60 KFEIWDTAGQERY---HSLAPMYY---RG--AAAAIIVYDITNQASFERA--KKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 60 ~~~i~D~~G~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
.+.+||+||+.+. +..+..++ .. ++++++++|.......... ..|+...... ..++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5999999997653 23332222 22 8999999999754322221 2233222221 24789999999999865
Q ss_pred CCCCCHHHHHH----------------------------HHHHcC--CcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 130 ARKVTAEEAQA----------------------------YAQENG--LFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 130 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
..+. +.... ..+..+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4322 11111 111223 47899999999999999999988774
No 278
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.47 E-value=1.3e-12 Score=94.94 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=65.0
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA 138 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 138 (200)
....++++.|......... ..+|.+|.|+|..+.+.... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4567788888432222221 12688999999987544211 111111 112378999999975322333333
Q ss_pred HHHHHH--cCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 139 QAYAQE--NGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 139 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
.+..+. .+.+++++||++|.|++++|+++.+.+.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444433 5678999999999999999999997654
No 279
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.47 E-value=1.1e-12 Score=98.35 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=71.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---c-------
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---L------- 75 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~------- 75 (200)
....+++|+|+|.+|+|||||+|+|++...... ....+.+...........+..+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 346689999999999999999999997654321 11212222222222223346799999999654311 1
Q ss_pred hhhhhc--CCcEEEEEEeCCCH-HHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 76 APMYYR--GAAAAIIVYDITNQ-ASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 76 ~~~~~~--~~d~~i~v~d~~~~-~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
...++. ..|++++|..++.. .... .+..++...... ....++++|+||+|...+
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~-~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP-SIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh-hhHhCEEEEEeCCccCCC
Confidence 112232 57888888766532 1121 222233332221 123469999999998643
No 280
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.6e-12 Score=101.56 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=125.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh-CcccC-------------------cccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK-GQFIE-------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 67 (200)
.++...+||-+|.+|||||-.+|+. +..+. .....-|+...+...+++..+..+.++|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4577899999999999999999764 11110 112234677888889999999999999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--------------
Q 029029 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV-------------- 133 (200)
Q Consensus 68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-------------- 133 (200)
|++++..-+...+.-+|..++|+|....-. .+..++++..+. .++|++-++||.|......+
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQC 165 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence 999999888888889999999999986421 122344444443 47899999999996331000
Q ss_pred ---------------------------------------------C--------HHHHHHHHH-----------------
Q 029029 134 ---------------------------------------------T--------AEEAQAYAQ----------------- 143 (200)
Q Consensus 134 ---------------------------------------------~--------~~~~~~~~~----------------- 143 (200)
. .+...++..
T Consensus 166 ~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~f 245 (528)
T COG4108 166 APITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAF 245 (528)
T ss_pred ecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHH
Confidence 0 000011100
Q ss_pred --HcCCcEEEecCCCCCCHHHHHHHHHHhccccCCCCCCCCcee
Q 029029 144 --ENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVL 185 (200)
Q Consensus 144 --~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (200)
..-.|+|.-||..+.|++.+++.+++......+.....+.|.
T Consensus 246 l~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~ 289 (528)
T COG4108 246 LAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVE 289 (528)
T ss_pred hcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCccc
Confidence 011378999999999999999999999999888888777664
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.5e-12 Score=99.07 Aligned_cols=151 Identities=26% Similarity=0.275 Sum_probs=108.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCccc------------Cc-------------------ccCcceeeEEEEEEEEC
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI------------EF-------------------QESTIGAAFFSQTLAVN 55 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~------------~~-------------------~~~~~~~~~~~~~~~~~ 55 (200)
....+|++-+|...-||||||-+|+..... +. .+...|.+.......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 456789999999999999999999974331 00 11123455555555566
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK--KWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (200)
-...+|.+-||||+++|..-+..-...||+.|+++|.... -+++.+ .++..+... ..+++.+||+||.+..+-
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLGI----rhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLGI----RHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhCC----cEEEEEEeeecccccCHH
Confidence 6778899999999999998888888899999999999664 222222 223333222 358899999999886654
Q ss_pred CHHH----HHHHHHHcCC---cEEEecCCCCCCHHH
Q 029029 134 TAEE----AQAYAQENGL---FFMETSAKTATNVND 162 (200)
Q Consensus 134 ~~~~----~~~~~~~~~~---~~~~~Sa~~~~~i~~ 162 (200)
..+. -..++..+++ .++++||..|.|+-.
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 4433 3455666665 589999999998865
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.45 E-value=4.6e-13 Score=114.32 Aligned_cols=119 Identities=20% Similarity=0.185 Sum_probs=80.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCc---------------ccCc---ccCcceeeEEEEEEEECCeEEEEEEEeCCC
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ---------------FIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 68 (200)
...-.+|+++|+.++|||||+++|+... +... ...+............+..++.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3456799999999999999999997521 1110 111222222222333566788999999999
Q ss_pred ccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+..+.......+..+|++|+|+|..+...... ...+..... .+.|.++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhccc
Confidence 99888777888999999999999876422211 122222222 3567889999999853
No 283
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.44 E-value=2.6e-12 Score=86.25 Aligned_cols=114 Identities=30% Similarity=0.400 Sum_probs=80.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCccc-CcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.++++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997655543222 2221 222334456788999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029 90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (200)
|+.....+++.+ |...+......+.|.++++||.|+.+......+.. ..++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999888765 77777665556788999999999854333333222 245678899999874
No 284
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.43 E-value=6.7e-13 Score=99.46 Aligned_cols=99 Identities=21% Similarity=0.312 Sum_probs=79.4
Q ss_pred cccccchhhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc
Q 029029 70 ERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF 148 (200)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (200)
+++..+.+.++.++|++++|+|+.++. +++.+.+|+..+.. .++|+++|+||+|+.+.+....+....+ +..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567777788999999999999999877 78899999876654 5789999999999975444333344444 457889
Q ss_pred EEEecCCCCCCHHHHHHHHHHhcc
Q 029029 149 FMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
++++||++|.|++++|+.+.+.+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~~~~~ 123 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQNRIS 123 (245)
T ss_pred EEEEecCCchhHHHHHhhhcCCEE
Confidence 999999999999999998876443
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.43 E-value=4.4e-12 Score=110.40 Aligned_cols=105 Identities=23% Similarity=0.269 Sum_probs=73.1
Q ss_pred EEEEeCCCccccccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC---
Q 029029 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--- 134 (200)
Q Consensus 61 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--- 134 (200)
+.||||||++.+..+....+..+|++++|+|.++ +.+++.+ ..+.. .++|+++++||+|+.......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccch
Confidence 8999999999988777777888999999999986 3343332 23332 357999999999985422110
Q ss_pred ---------HHH----HH----HH---HHHc---------------CCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 135 ---------AEE----AQ----AY---AQEN---------------GLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 135 ---------~~~----~~----~~---~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
.+. .. .. ...+ .++++++||++|.|+++++.+|.....
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 010 10 00 0111 357999999999999999998876544
No 286
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.42 E-value=1.3e-12 Score=96.38 Aligned_cols=174 Identities=14% Similarity=0.180 Sum_probs=102.1
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcc--------------eeeEE----------------------
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI--------------GAAFF---------------------- 48 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~--------------~~~~~---------------------- 48 (200)
+..++++-|+++|..||||||++++|..-.......+.. .++..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 456788999999999999999999997532221111110 00000
Q ss_pred -E-----------EEEEECCeEEEEEEEeCCCccccccc------hhhhh--cCCcEEEEEEeCCC---HHHHHHHHHHH
Q 029029 49 -S-----------QTLAVNDATVKFEIWDTAGQERYHSL------APMYY--RGAAAAIIVYDITN---QASFERAKKWV 105 (200)
Q Consensus 49 -~-----------~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~v~d~~~---~~s~~~~~~~~ 105 (200)
. ..+.-........++||||+.+.... ....+ ...-+++|++|... +-+|=.-.-+-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 0 00000122345899999998643221 11112 23567888888753 43332222222
Q ss_pred HHHHHhCCCCCeEEEEEeCcCccCCCCC-----CHHHHHHHHH---------------------HcCCcEEEecCCCCCC
Q 029029 106 QELQAQGNPNMVMALAGNKADLLDARKV-----TAEEAQAYAQ---------------------ENGLFFMETSAKTATN 159 (200)
Q Consensus 106 ~~i~~~~~~~~~~ivv~nK~D~~~~~~~-----~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~~ 159 (200)
..+... ...|++++.||.|+.+.... +.+..+...+ -.++..+-+|+.+|.|
T Consensus 174 cSilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 174 CSILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 333333 57899999999998764211 1111111111 1245789999999999
Q ss_pred HHHHHHHHHHhccccCCCCCC
Q 029029 160 VNDIFYEIAKRLPRVQPAPNP 180 (200)
Q Consensus 160 i~~~~~~l~~~~~~~~~~~~~ 180 (200)
.+++|..+.+.+.+....+.|
T Consensus 252 ~ddf~~av~~~vdEy~~~ykp 272 (366)
T KOG1532|consen 252 FDDFFTAVDESVDEYEEEYKP 272 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999998888776655554
No 287
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.41 E-value=6.9e-12 Score=97.44 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=85.2
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~ 125 (200)
.+..+.+||++|+...+..|..++.+++++|+|+|.++. ..+.+....+..+.... ..++|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457799999999999999999999999999999999873 33444445555555432 2689999999999
Q ss_pred CccCCC----------------CCCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 126 DLLDAR----------------KVTAEEAQAYAQE----------NGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 126 D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
|+.... ..+.+.+..+... ..+..+.++|.+..+++.+|+.+.+.+...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 963311 1234444444322 123356788999999999999888877654
No 288
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.40 E-value=8.9e-12 Score=100.65 Aligned_cols=166 Identities=18% Similarity=0.330 Sum_probs=115.6
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC--eEEEEEEEeCCCccccccchhhhhcC-
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND--ATVKFEIWDTAGQERYHSLAPMYYRG- 82 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~- 82 (200)
+....-.|+|+|..++||||||.+|.+.. ...+..+.+|.......++ ...++.+|...|...+..+.+..+..
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 34556899999999999999999987533 2345556666555444322 23568999998876676666665543
Q ss_pred ---CcEEEEEEeCCCHHHH-HHHHHHHHHHHHh-------------------------------C---------------
Q 029029 83 ---AAAAIIVYDITNQASF-ERAKKWVQELQAQ-------------------------------G--------------- 112 (200)
Q Consensus 83 ---~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~-------------------------------~--------------- 112 (200)
--++|+|+|.+.|..+ +.+..|+..+..+ .
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 2478999999998653 4556665422110 0
Q ss_pred ----------------CCCCeEEEEEeCcCccCC----CCC-------CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 113 ----------------NPNMVMALAGNKADLLDA----RKV-------TAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 113 ----------------~~~~~~ivv~nK~D~~~~----~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
.-++|++||++|.|.... ... -...++.+|..+|..+|.||+++..+++.++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 015899999999997431 111 11337788888999999999999999999999
Q ss_pred HHHHhcccc
Q 029029 166 EIAKRLPRV 174 (200)
Q Consensus 166 ~l~~~~~~~ 174 (200)
+|..++...
T Consensus 258 yi~h~l~~~ 266 (472)
T PF05783_consen 258 YILHRLYGF 266 (472)
T ss_pred HHHHHhccC
Confidence 988887654
No 289
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.39 E-value=1e-11 Score=97.73 Aligned_cols=163 Identities=19% Similarity=0.227 Sum_probs=114.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCccc--C------------cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI--E------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 75 (200)
-.+|+|+-+..-|||||+..|+.+.-. . .....-|.+...+...+...++.+.+.||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 357999999999999999999864321 1 11222356666666666677799999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHHHHHHH-------cCC
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQE-------NGL 147 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~ 147 (200)
.+..++.+|++++++|..+. .+.+.+-.++.-.. .+.+.|||+||+|....+. ...++...++.. +..
T Consensus 85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 99999999999999999873 12222222222222 3566788999999865432 122334444443 446
Q ss_pred cEEEecCCCC----------CCHHHHHHHHHHhccccCC
Q 029029 148 FFMETSAKTA----------TNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 148 ~~~~~Sa~~~----------~~i~~~~~~l~~~~~~~~~ 176 (200)
|++..|+..| .++.-+|+.|++.+.....
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 8888888766 4677899999988877664
No 290
>PTZ00258 GTP-binding protein; Provisional
Probab=99.39 E-value=9.9e-12 Score=98.11 Aligned_cols=86 Identities=22% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE--CCe---------------EEEEEEEeCCC
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV--NDA---------------TVKFEIWDTAG 68 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~i~D~~G 68 (200)
.....++|+++|.|++|||||+|+|++.... ....++++..+....+ .+. +..++++|+||
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 4466789999999999999999999865432 2223333333333222 211 23599999999
Q ss_pred ccccc----cc---hhhhhcCCcEEEEEEeCC
Q 029029 69 QERYH----SL---APMYYRGAAAAIIVYDIT 93 (200)
Q Consensus 69 ~~~~~----~~---~~~~~~~~d~~i~v~d~~ 93 (200)
...-. .+ .-..++.+|++++|+|..
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 54211 11 112357899999999973
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.39 E-value=5.4e-12 Score=97.85 Aligned_cols=106 Identities=11% Similarity=0.028 Sum_probs=67.8
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CH
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TA 135 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~ 135 (200)
++.+.|+||+|...... .....+|.++++.+....+..... ...+... .-++|+||.|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~---k~gi~E~-----aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI---KKGIMEL-----ADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH---Hhhhhhh-----hheEEeehhcccchhHHHHHH
Confidence 46799999999763332 256789999999775444333222 1212221 23789999998653211 11
Q ss_pred HHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 136 EEAQAYAQE-------NGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
.+++..... +..+++.+||.++.|++++++.+.+.+...
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 222222221 235799999999999999999999987633
No 292
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.38 E-value=1.3e-11 Score=91.57 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=83.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
...+..|+++|++|+|||||++.|++...........|. ..+ ....+..+.++||||.. . ........+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEE
Confidence 456788999999999999999999854222212222221 111 12246678999999864 2 222346789999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCCC---HHHHHH-HHH--HcCCcEEEecCCCCC
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT---AEEAQA-YAQ--ENGLFFMETSAKTAT 158 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~-~~~--~~~~~~~~~Sa~~~~ 158 (200)
++++|.+...... ....+..+... +.| +++|+||.|+.+..... .+.++. +.. ..+.+++.+||+++-
T Consensus 108 llviDa~~~~~~~-~~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEME-TFEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHH-HHHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9999997643221 12333334333 456 45599999986432111 112222 221 134589999999873
No 293
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.37 E-value=2.3e-11 Score=98.01 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=118.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
..-++..++|+.++|||.|++.++++.+......+....+..+.....+....+.+-|.+-. ........- ..+|++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 34577899999999999999999988776655555555555666666666667778787654 222222222 6799999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE 166 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~ 166 (200)
++||++++.+|..+...++.-... ...|+++|++|+|+.+..+...-.-.+++..++++ -+.+|.+.... .++|..
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 999999999998887766555444 67899999999999765433322237888888884 55666665334 899999
Q ss_pred HHHhccccC
Q 029029 167 IAKRLPRVQ 175 (200)
Q Consensus 167 l~~~~~~~~ 175 (200)
|...+.-.+
T Consensus 578 L~~~A~~Ph 586 (625)
T KOG1707|consen 578 LATMAQYPH 586 (625)
T ss_pred HHHhhhCCC
Confidence 998887766
No 294
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.37 E-value=1.5e-11 Score=96.41 Aligned_cols=160 Identities=14% Similarity=0.230 Sum_probs=101.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccC--------------cccCcce---eeEEEEE-------EEE-CCeEEEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE--------------FQESTIG---AAFFSQT-------LAV-NDATVKFE 62 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~--------------~~~~~~~---~~~~~~~-------~~~-~~~~~~~~ 62 (200)
+.++-|+|+|+.++||||||++|.+....+ ..++..| ++..++. +.. ++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 568899999999999999999999762211 2334445 3333332 222 45567899
Q ss_pred EEeCCCcccc--------cc---------------------chhhhhc-CCcEEEEEE-eCC----CHHHHHHH-HHHHH
Q 029029 63 IWDTAGQERY--------HS---------------------LAPMYYR-GAAAAIIVY-DIT----NQASFERA-KKWVQ 106 (200)
Q Consensus 63 i~D~~G~~~~--------~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~ 106 (200)
++||+|...- .. -+...+. .+|+.|+|. |.+ .++.+... .+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999993211 11 0223345 789999988 764 12223332 46666
Q ss_pred HHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC--CCCHHHHHHHHHHhcc
Q 029029 107 ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT--ATNVNDIFYEIAKRLP 172 (200)
Q Consensus 107 ~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~~~ 172 (200)
.++.. ++|+++++|+.|..... ..+....+..+++++++.+|+.. ...|..+++.++....
T Consensus 175 eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 175 ELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred HHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 66664 78999999999943221 33444566677888877777644 4567777766655443
No 295
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.36 E-value=1e-11 Score=90.95 Aligned_cols=149 Identities=16% Similarity=0.168 Sum_probs=83.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCc------------cc----CcceeeEEEEEEE------------------E
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF------------QE----STIGAAFFSQTLA------------------V 54 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~------------~~----~~~~~~~~~~~~~------------------~ 54 (200)
....|+|+|+.|+|||||+++++....... .. ...+... .... .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~--~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPA--IQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcE--EEEcCCCcccCChHHHHHHHHHh
Confidence 467899999999999999999985311100 00 0000000 0000 0
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (200)
Q Consensus 55 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~ 134 (200)
......+.++|+.|.-... ..+....+..+.++|..+.+.. ..... .. ...|.++++||.|+.+.....
T Consensus 99 ~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYP-GM-----FKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred ccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhH-hH-----HhhCCEEEEEHHHccccchhh
Confidence 0012357777777721100 0111234555677777654221 11111 11 235679999999996543223
Q ss_pred HHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 135 AEEAQAYAQEN--GLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 135 ~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
........+.. ..+++++||+++.|++++++++.+.
T Consensus 168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33344444443 3789999999999999999999875
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.36 E-value=3.8e-13 Score=100.15 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=59.6
Q ss_pred EEEEEeCCCccccccchhhhh--------cCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 60 KFEIWDTAGQERYHSLAPMYY--------RGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 60 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
.+.++|||||.++...+.... ...-++++++|..-... ...+..++..+...-..+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 489999999987766655543 44568889999863221 222333333333222247899999999999762
Q ss_pred CC-------CC------------HHHHHHHHHH---cC-C-cEEEecCCCCCCHHHHHHHHHHhc
Q 029029 131 RK-------VT------------AEEAQAYAQE---NG-L-FFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 131 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
.. .+ ....+.++.. .+ + +++++|+.+++++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 20 00 0001111111 12 3 699999999999999999876643
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.35 E-value=2.6e-11 Score=103.94 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=77.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCccc-----------C---cceeeEEE----EEEEECCeEEEEEEEeCCCc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-----------S---TIGAAFFS----QTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~-----------~---~~~~~~~~----~~~~~~~~~~~~~i~D~~G~ 69 (200)
.+-.+|+++|+.++|||||+++|+...-..... + .-|.+... .....++.+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 445679999999999999999998632110000 0 00111111 11223445788999999999
Q ss_pred cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
.++.......+..+|++|+|+|....... .....+...... +.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc---CCCeEEEEECchhh
Confidence 98887778888999999999998864222 222223332222 45778999999975
No 298
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=8.5e-12 Score=97.53 Aligned_cols=159 Identities=17% Similarity=0.196 Sum_probs=80.7
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCccee---eEEEEEEEECCeEEEEEEEeCCCccccccchhhh-----
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA---AFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY----- 79 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----- 79 (200)
..+++|+|+|.+|+|||||||+|.|-..........|+ +........+ ..-++.+||.||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 45789999999999999999999753332222222221 1112222211 11249999999965433333333
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEeCcCcc--C-----CCCCC----HHHHHHHHHH---
Q 029029 80 YRGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLL--D-----ARKVT----AEEAQAYAQE--- 144 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ivv~nK~D~~--~-----~~~~~----~~~~~~~~~~--- 144 (200)
+..-|.+|++.+-. |..... +.+.+... ++|+++|-+|+|.. + ++... .+.+++.+..
T Consensus 112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 45678888876532 333332 33445444 78899999999961 1 11112 2233333322
Q ss_pred -cCC---cEEEecCCCC--CCHHHHHHHHHHhcccc
Q 029029 145 -NGL---FFMETSAKTA--TNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 145 -~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~~~~ 174 (200)
.++ ++|-+|..+- .++-.+.+.|.+.+...
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 344 5889998874 46777888887777654
No 299
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=6.5e-11 Score=90.21 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=100.7
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcc----c---CcccCcceeeEEEEEEE-------ECCeEEEEEEEeCCCccccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF----I---EFQESTIGAAFFSQTLA-------VNDATVKFEIWDTAGQERYH 73 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~----~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~G~~~~~ 73 (200)
..++++.++|+..||||||.++|..-.. + ......+..+..-.... -.+...++.+.|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 3459999999999999999999864221 1 11111111111111111 13456789999999997654
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--HH-HHHHHH---H--
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLLDARKVTA--EE-AQAYAQ---E-- 144 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~-~~~~~~---~-- 144 (200)
+.......-.|..++|+|......-...+- .+-++ .....++|+||+|...+++... ++ ..+..+ .
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 444444455789999999986422111111 11111 2234788899999865433221 11 112211 1
Q ss_pred --cCCcEEEecCCCC----CCHHHHHHHHHHhccccCCCCC
Q 029029 145 --NGLFFMETSAKTA----TNVNDIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 145 --~~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~~~~ 179 (200)
.+.|++++||..| ..+.++.+.|..++-+...+..
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~ 200 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE 200 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence 2368999999999 8899999998888877665544
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.33 E-value=2.4e-11 Score=86.07 Aligned_cols=62 Identities=21% Similarity=0.197 Sum_probs=42.8
Q ss_pred EEEEeCCCccc----cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCc
Q 029029 61 FEIWDTAGQER----YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125 (200)
Q Consensus 61 ~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~ 125 (200)
+.|+||||... ....+..++..+|++|+|.+.+..........+.+..... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 99999999642 3356677889999999999999865544444444444333 23388899985
No 301
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.32 E-value=3.9e-11 Score=94.03 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=83.3
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~ 125 (200)
....+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....++.+.... ..+.|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 345689999999999999999999999999999999963 23444445555555532 3679999999999
Q ss_pred CccCCC---------------CCCHHHHHHHHHH-----c------CCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 126 DLLDAR---------------KVTAEEAQAYAQE-----N------GLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 126 D~~~~~---------------~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
|+.... ..+.+.+..+... . .+..+.++|.+..++..+|+.+.+.+...
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 974310 1233333333321 1 13355788999999999998887766543
No 302
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.32 E-value=5.2e-12 Score=100.96 Aligned_cols=184 Identities=20% Similarity=0.348 Sum_probs=138.0
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
...-+++|+.|+|..++|||+|+++++.+.+.....+.-| .+..++..++....+.+.|.+|... ..|...+|
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvd 97 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVD 97 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhcc
Confidence 4556799999999999999999999999998876655544 5677777788888899999988432 34556799
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccC--CCCCCHHHHHHH-HHHcCCcEEEecCCCCCCH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLD--ARKVTAEEAQAY-AQENGLFFMETSAKTATNV 160 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i 160 (200)
++||||...+..+|+.+..+...+..+ ....+|+++++++.-... .+.+..+..+++ ++...+.+|++++.+|.++
T Consensus 98 avIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 98 AVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred ceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 999999999999998887766665543 346788888888765532 333444444444 4445678999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCCCceeccCCCCCCCC
Q 029029 161 NDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTAS 195 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (200)
...|..++.++............+..+.|...+++
T Consensus 178 ~rvf~~~~~k~i~~~~~qq~~~~~~~s~~~s~~~s 212 (749)
T KOG0705|consen 178 ERVFQEVAQKIVQLRKYQQLPASSSKSLPESPSHS 212 (749)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccCCccc
Confidence 99999999888877655555555555666655544
No 303
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.32 E-value=5.1e-11 Score=84.11 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=90.4
Q ss_pred Cccc-eeEEEECCCCCCHHHHHHHHHhCcccCcccCc------------------ceeeEEEEEE---------------
Q 029029 7 KNIN-AKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST------------------IGAAFFSQTL--------------- 52 (200)
Q Consensus 7 ~~~~-~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~------------------~~~~~~~~~~--------------- 52 (200)
.+++ ++|.|.|++|||||+|+.+++..... .+... .+........
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~-~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai 87 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKD-EYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAI 87 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHh-hCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHH
Confidence 3455 89999999999999999998742211 11100 0000000000
Q ss_pred ---EECCeEEEEEEEeCCCccccccchhhhhcCCc-EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 53 ---AVNDATVKFEIWDTAGQERYHSLAPMYYRGAA-AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 53 ---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
...+....+.|++..| .- ....-+.-.| .-|+|+|....+--. ++-...+ ...-++|+||.|+.
T Consensus 88 ~~l~~~~~~~Dll~iEs~G-NL---~~~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i------~~aDllVInK~DLa 155 (202)
T COG0378 88 EELVLDFPDLDLLFIESVG-NL---VCPFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGI------FKADLLVINKTDLA 155 (202)
T ss_pred HHHhhcCCcCCEEEEecCc-ce---ecccCcchhhceEEEEEECCCCCCCc--ccCCCce------eEeeEEEEehHHhH
Confidence 0011113566666666 11 1111122344 888889988653210 0000000 11357899999999
Q ss_pred CCCCCCHHHHHHHHHH--cCCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029 129 DARKVTAEEAQAYAQE--NGLFFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
..-..+.+...+.+++ .+.+++.+|+++|.|+++++.|+....
T Consensus 156 ~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 156 PYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 8777777777666665 457899999999999999999987654
No 304
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.31 E-value=3.1e-12 Score=96.47 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=100.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhhh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMYY 80 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 80 (200)
..-|++||.+++||||||++|++....++..-....+......+++. +..+.+.||.|.-. |+... .-.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATL-eeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATL-EEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHH-HHH
Confidence 45689999999999999999996655554444444443333444433 34588899999421 12111 124
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe----EEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV----MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 156 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (200)
..+|+++-|.|+++|..-.+....+..+....-+..| ++=|-||+|..+... . .+.++ -+.+||.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n~--~v~isalt 325 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKNL--DVGISALT 325 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccCC--cccccccc
Confidence 6799999999999997766656666666665443333 455678888644211 1 12233 47899999
Q ss_pred CCCHHHHHHHHHHhccc
Q 029029 157 ATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~ 173 (200)
|.|++++...+-.+...
T Consensus 326 gdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVAS 342 (410)
T ss_pred CccHHHHHHHHHHHhhh
Confidence 99999999988776654
No 305
>PTZ00416 elongation factor 2; Provisional
Probab=99.30 E-value=1.3e-11 Score=106.84 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=78.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccC--c------------ccCcceeeEEE--EEEEEC--------CeEEEEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE--F------------QESTIGAAFFS--QTLAVN--------DATVKFEI 63 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~--~------------~~~~~~~~~~~--~~~~~~--------~~~~~~~i 63 (200)
.+-.+|+|+|+.++|||||+++|+...-.- . ....-|.+... ...... +.++.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445699999999999999999998632110 0 00001112211 112221 22577999
Q ss_pred EeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 64 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
+||||+.++.......+..+|++|+|+|..+.-.. .....+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH---cCCCEEEEEEChhhh
Confidence 99999998877778888999999999999874222 22233444443 357999999999985
No 306
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.30 E-value=1.4e-11 Score=106.87 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=79.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCccc--C---------cc---cCcceeeEEE--EEEEE--------------C
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------FQ---ESTIGAAFFS--QTLAV--------------N 55 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~---------~~---~~~~~~~~~~--~~~~~--------------~ 55 (200)
+..+-.+|+|+|+.++|||||+++|+...-. . .. ...-|.+... ..... .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3455669999999999999999999864321 0 00 0001122221 11111 2
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
..++.+.++||||+.++.......+..+|++|+|+|..+.-.... +..+..... .++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence 236789999999999988888888899999999999987533222 233333333 468999999999986
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.29 E-value=4.1e-11 Score=91.35 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=76.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcc----------cCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---ccc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---HSL 75 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~~~ 75 (200)
..++|+|+|.+|+|||||||.|++....... ..+..+.........++....+.++||||.... ...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4789999999999999999999975443321 112223333445555778899999999993211 000
Q ss_pred hhh------------------------hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 76 APM------------------------YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 76 ~~~------------------------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
+.. .=...|+++|.++++...--..-...++.+. ..+++|.|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 000 0124789999999865211111123344443 347799999999975433
Q ss_pred CCC--HHHHHHHHHHcCCcEEEecC
Q 029029 132 KVT--AEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~~Sa 154 (200)
++. ...+....+.+++++|....
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHcCceeecccc
Confidence 221 23344455667887665443
No 308
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.28 E-value=2.1e-10 Score=89.76 Aligned_cols=81 Identities=21% Similarity=0.139 Sum_probs=51.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEE--EEEECCe---------------EEEEEEEeCCCccccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ--TLAVNDA---------------TVKFEIWDTAGQERYH 73 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~i~D~~G~~~~~ 73 (200)
++|+++|.|++|||||+|+|++.... ....++++..+. ...+.+. ...+.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 78999999999999999999976532 222222332222 2222221 1359999999954211
Q ss_pred ----cchhh---hhcCCcEEEEEEeCC
Q 029029 74 ----SLAPM---YYRGAAAAIIVYDIT 93 (200)
Q Consensus 74 ----~~~~~---~~~~~d~~i~v~d~~ 93 (200)
.+... .++.+|++++|+|..
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11112 357899999999974
No 309
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.28 E-value=2e-11 Score=89.48 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=107.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhhhcC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYYRG 82 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 82 (200)
..++.++|.|++||||++..|. +.+.+ .....+++............-++++.|.||.-+ .........+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~-g~~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLT-GTFSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhc-CCCCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 4589999999999999999998 44433 334444555555444555667899999999432 22334445678
Q ss_pred CcEEEEEEeCCCHHHHHHH-HHHHHHH-----------------------------------------------------
Q 029029 83 AAAAIIVYDITNQASFERA-KKWVQEL----------------------------------------------------- 108 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~-~~~~~~i----------------------------------------------------- 108 (200)
++++++|+|...|-+...+ +..++.+
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 9999999998877655443 2322200
Q ss_pred --------HHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHHHHHhccccCCCCC
Q 029029 109 --------QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 109 --------~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 179 (200)
...+...+|.+++.||+|...-++.+. .+.++ .+++||.+++|++++++.+.+.+.-.+....
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi--------i~~iphavpISA~~~wn~d~lL~~mweyL~LvriYtk 288 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI--------IYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTK 288 (358)
T ss_pred chhhhhhhhccCceeeeeeeeecccceeeeeccce--------eeeccceeecccccccchHHHHHHHhhcchheEEecC
Confidence 000112678888999998644332221 12333 5799999999999999999998776544444
Q ss_pred CC
Q 029029 180 PS 181 (200)
Q Consensus 180 ~~ 181 (200)
|.
T Consensus 289 PK 290 (358)
T KOG1487|consen 289 PK 290 (358)
T ss_pred CC
Confidence 43
No 310
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=7.6e-11 Score=95.08 Aligned_cols=154 Identities=22% Similarity=0.254 Sum_probs=106.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCccc-----------------------------CcccCcceeeEEEEEEEECCeE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-----------------------------EFQESTIGAAFFSQTLAVNDAT 58 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (200)
...+..+++|+..+|||||+.+|+...-. ......-|++.......++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 46789999999999999999998762111 1122234677777777888888
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~ 132 (200)
..++++|+||+..|-.-+..-...+|+.|+|+|.+..+ .|+ +.++....++..+ -..++|++||+|+.+-.+
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccH
Confidence 89999999998888777777778899999999998532 122 2234444444443 345888999999865332
Q ss_pred CCHHHH----HHHH-HHcC-----CcEEEecCCCCCCHHHH
Q 029029 133 VTAEEA----QAYA-QENG-----LFFMETSAKTATNVNDI 163 (200)
Q Consensus 133 ~~~~~~----~~~~-~~~~-----~~~~~~Sa~~~~~i~~~ 163 (200)
-..+++ ..+. +..| +.|+++|+.+|+|+-..
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 222222 2222 2333 46999999999987653
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.24 E-value=9.6e-11 Score=90.52 Aligned_cols=104 Identities=16% Similarity=0.043 Sum_probs=65.3
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA-- 135 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~-- 135 (200)
++.+.|+||+|..... ......+|.++++.+... .+++......+ ..+|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 5679999999854222 235667888888854432 33333333333 2466799999999865322110
Q ss_pred H----HHHHHHH---HcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 136 E----EAQAYAQ---ENGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 136 ~----~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
. ....+.. .+..+++.+||+++.|++++++++.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 0111111 12346899999999999999999998754
No 312
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.4e-11 Score=98.74 Aligned_cols=162 Identities=20% Similarity=0.221 Sum_probs=103.1
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCc----ccCcceeeEEEEEE------------EECCeEEEEEEEeCCCcccc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF----QESTIGAAFFSQTL------------AVNDATVKFEIWDTAGQERY 72 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~ 72 (200)
+..=+.|+|+..+|||-|+..+-+...... ....+|.++++..- .....--.+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 344578999999999999999975433221 12234444444320 00011123889999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----CCH---------HH--
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----VTA---------EE-- 137 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----~~~---------~~-- 137 (200)
..+.......+|++|+|+|+-+.-.... ++.+......+.|+||.+||+|..-... .+. +-
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqt----iESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQT----IESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcch----hHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 9999999999999999999986411111 2222222335789999999999632110 000 00
Q ss_pred ---------HHHHHHH-cC-------------CcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 138 ---------AQAYAQE-NG-------------LFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 138 ---------~~~~~~~-~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
+..++.. ++ +.++++||.+|.||-+++.+|++..+..
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 1111110 11 2477999999999999999999877654
No 313
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.20 E-value=3.5e-10 Score=85.71 Aligned_cols=81 Identities=20% Similarity=0.095 Sum_probs=49.4
Q ss_pred EEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCcccc----c
Q 029029 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY----H 73 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~----~ 73 (200)
|+++|.|++|||||+|+|++........+..+.+.......+.+. ...++++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999976552221122221222222222221 235999999995421 1
Q ss_pred cchhh---hhcCCcEEEEEEeCC
Q 029029 74 SLAPM---YYRGAAAAIIVYDIT 93 (200)
Q Consensus 74 ~~~~~---~~~~~d~~i~v~d~~ 93 (200)
.+... .++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11122 356899999999863
No 314
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=5.7e-11 Score=85.70 Aligned_cols=147 Identities=21% Similarity=0.319 Sum_probs=92.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCcccc-----ccchhhhhcC
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERY-----HSLAPMYYRG 82 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~-----~~~~~~~~~~ 82 (200)
...||++.|.+||||||+=..+. ..+........|.+..........- +..+.+||.+|++.+ .......+.+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF-~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIF-ANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhh-hhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 35689999999999999854444 2232222233333333333333222 367999999998732 2344557889
Q ss_pred CcEEEEEEeCCCHHHHHH---HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC------HHHHHHHHHHcCCcEEEec
Q 029029 83 AAAAIIVYDITNQASFER---AKKWVQELQAQGNPNMVMALAGNKADLLDARKVT------AEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~S 153 (200)
++++++|||++..+-... -+..++.+..+ .+...++....|.|+....... .++++.+....++.++++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999987643333 34555666655 4778899999999997533211 2223344444556778887
Q ss_pred CCCC
Q 029029 154 AKTA 157 (200)
Q Consensus 154 a~~~ 157 (200)
..+.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 7663
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.17 E-value=4.5e-10 Score=83.49 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=42.5
Q ss_pred EEEEEEeCCCcccc-------------ccchhhhhc-CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 029029 59 VKFEIWDTAGQERY-------------HSLAPMYYR-GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124 (200)
Q Consensus 59 ~~~~i~D~~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK 124 (200)
..+.++|+||.... ..+...|++ ..+++++|+|.+..-.-....+..+.+.. .+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 35999999996421 123444666 45689999987642221121223333333 46789999999
Q ss_pred cCccCC
Q 029029 125 ADLLDA 130 (200)
Q Consensus 125 ~D~~~~ 130 (200)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.6e-10 Score=94.59 Aligned_cols=123 Identities=19% Similarity=0.169 Sum_probs=87.3
Q ss_pred CCCCCccceeEEEECCCCCCHHHHHHHHHhCccc-Cc---------------ccCcceeeEEEEEEEECCe-EEEEEEEe
Q 029029 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EF---------------QESTIGAAFFSQTLAVNDA-TVKFEIWD 65 (200)
Q Consensus 3 ~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~i~D 65 (200)
.....++-.+|.++|+.++|||||..+|+...-. .. ....-|.+......+..-. ++.++++|
T Consensus 3 ~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlID 82 (697)
T COG0480 3 RLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLID 82 (697)
T ss_pred cccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeC
Confidence 3334667789999999999999999999863221 11 0111245555555555444 58999999
Q ss_pred CCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 66 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
|||+-++.......++-.|++|+|+|....-....-.-| +... ..++|.++++||+|...
T Consensus 83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~---~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQAD---KYGVPRILFVNKMDRLG 142 (697)
T ss_pred CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHh---hcCCCeEEEEECccccc
Confidence 999999999999999999999999999875322222223 2222 34789999999999754
No 317
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.11 E-value=1.3e-09 Score=90.24 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=69.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE-EEEEEECCeEEEEEEEeCCCccccc-------cc---h
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF-SQTLAVNDATVKFEIWDTAGQERYH-------SL---A 76 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~ 76 (200)
...++|+|+|.+|+||||++|.|++...........+++.. ...... .+..+.++||||..... .. .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i--dG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE--CCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 34679999999999999999999976543322212222222 122222 24679999999965421 11 1
Q ss_pred hhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccC
Q 029029 77 PMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLD 129 (200)
Q Consensus 77 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~ 129 (200)
..++. .+|++|+|..+.......+-..+++.+.... ..-..+||++|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11223 5899999987653211111112333332221 12345888999999875
No 318
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.11 E-value=2e-09 Score=82.96 Aligned_cols=140 Identities=14% Similarity=0.250 Sum_probs=88.4
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCc----------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---c
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---H 73 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~ 73 (200)
....++|+++|+.|+|||||+|.|++...... ..++.....+...+.-++....+.++||||-.+. .
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 46789999999999999999999998644322 1223334444445555677889999999993221 1
Q ss_pred cchhh-----------h------------h--cCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029 74 SLAPM-----------Y------------Y--RGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL 127 (200)
Q Consensus 74 ~~~~~-----------~------------~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~ 127 (200)
..|.. | + ..+|+++|.+.++.- .+..+ .+.++.+... +-+|-|+.|+|.
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~~----vNlIPVI~KaD~ 174 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSKR----VNLIPVIAKADT 174 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhcc----cCeeeeeecccc
Confidence 11111 1 1 236888888887642 22222 3444555443 447888999997
Q ss_pred cCCCCCC--HHHHHHHHHHcCCcEEE
Q 029029 128 LDARKVT--AEEAQAYAQENGLFFME 151 (200)
Q Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (200)
....++. .+.+++....+++++|.
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 6433221 24466667778888774
No 319
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=8.1e-10 Score=90.55 Aligned_cols=120 Identities=19% Similarity=0.287 Sum_probs=85.4
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCc---------------ceeeE--EEEEE---EECCeEEEEEEE
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST---------------IGAAF--FSQTL---AVNDATVKFEIW 64 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~---------------~~~~~--~~~~~---~~~~~~~~~~i~ 64 (200)
.+...-.+|+++|+-+.|||+|+..|....++...... -|.+. .+.+. ..++..+-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 44566788999999999999999999876664321111 01111 11122 225677889999
Q ss_pred eCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 65 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
||||+-.+.......++.+|++++++|..+.-.++. ...++.. ...+.|+++|+||+|..
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEehhHHH
Confidence 999999999888889999999999999988654433 2222222 23568999999999964
No 320
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.2e-09 Score=84.46 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=105.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCc-ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
-|+..|+-.-|||||+..+.+...... ....-|++........+..+....|+|.||++++-..+-..+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 477889999999999999986543211 1122234443444444455568999999999987777767777899999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH---HcCCcEEEecCCCCCCHHHHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ---ENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
|.++.-. .+..+.+..+...+ -...++|+||+|..+...+ .+...+..+ ..+.++|.+|+++|.||+++.+.|
T Consensus 82 ~~deGl~-~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 82 AADEGLM-AQTGEHLLILDLLG--IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred eCccCcc-hhhHHHHHHHHhcC--CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence 9965321 12223344444432 2236889999998764321 122222222 334678999999999999999999
Q ss_pred HHhcc
Q 029029 168 AKRLP 172 (200)
Q Consensus 168 ~~~~~ 172 (200)
.+...
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 99885
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.08 E-value=5.7e-10 Score=84.64 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=40.1
Q ss_pred CeEEEEEeCcCccCCCCCCHHHHHHHHHH--cCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 116 MVMALAGNKADLLDARKVTAEEAQAYAQE--NGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 116 ~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
.+-++|+||+|+........+......+. ...+++++||++|.|++++.+||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999975322233334443333 35789999999999999999999874
No 322
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=4.2e-09 Score=81.66 Aligned_cols=146 Identities=13% Similarity=0.185 Sum_probs=88.4
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCc---------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---c
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---H 73 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~ 73 (200)
++...++++++|.+|.|||||||.|+...+... ...+..+......+.-++-..+++++||||-.+. .
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 345679999999999999999999997644332 1112233334444444677889999999993211 1
Q ss_pred cch----------------------hhhhc--CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 74 SLA----------------------PMYYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 74 ~~~----------------------~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
..| +..+. .+|+++|.+.++.- .+..+ ...++.+. ..+.+|-|+.|+|..
T Consensus 97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTL 171 (366)
T ss_pred ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccC
Confidence 111 11122 47888888887642 12222 23333333 345688889999975
Q ss_pred CCCCC--CHHHHHHHHHHcCCcEEEecCCC
Q 029029 129 DARKV--TAEEAQAYAQENGLFFMETSAKT 156 (200)
Q Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~ 156 (200)
...++ -...+++....+++++|......
T Consensus 172 T~~El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 172 TKDELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred CHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 43322 22345666677888877665444
No 323
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.07 E-value=4.3e-09 Score=81.54 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=83.9
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH----------HHHHHHHHHHHHHhC-CCCCeEEEEEe
Q 029029 55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS----------FERAKKWVQELQAQG-NPNMVMALAGN 123 (200)
Q Consensus 55 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i~~~~-~~~~~~ivv~n 123 (200)
......+.++|++||...+.-|.+++.+++++|||+++++.+. +.+...+++.+.... ..+.++++++|
T Consensus 191 ~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLN 270 (354)
T KOG0082|consen 191 TIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLN 270 (354)
T ss_pred EeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEee
Confidence 3344779999999999999999999999999999999986321 122234445554443 36789999999
Q ss_pred CcCccCCC---------------CCCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 124 KADLLDAR---------------KVTAEEAQAYAQE----------NGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 124 K~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
|.|+-++. ....+++..+.+. ..+-.+.+.|.+..+|+.+|..+.+.+...
T Consensus 271 K~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 271 KKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred cHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 99985421 1233344433321 123355778999999999999988877654
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.06 E-value=1.2e-09 Score=82.06 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=93.6
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc----------cCcccCcceee----------------EEEEEEE------
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF----------IEFQESTIGAA----------------FFSQTLA------ 53 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~----------~~~~~~~~~~~----------------~~~~~~~------ 53 (200)
...+...|.|.|.||+|||||+..|..... ....++..|-. .+.....
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 345567899999999999999999864211 00011111100 0000000
Q ss_pred ------------ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 029029 54 ------------VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121 (200)
Q Consensus 54 ------------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv 121 (200)
.+..++.+.|++|.|-.+.. ......+|.++++.-+.-.+....+..-+.++ --++|
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~v 195 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIV 195 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheee
Confidence 11224558999998854433 33456799999988766554443333333332 23678
Q ss_pred EeCcCccCCCCCCHHHHHHHHH---------HcCCcEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 122 GNKADLLDARKVTAEEAQAYAQ---------ENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 122 ~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
+||.|....+ ....+.....+ .+.-+++.+||.+|.|++++++.+.+.......
T Consensus 196 INKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 196 INKADRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred EeccChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 9999954321 11111111111 133479999999999999999999988776544
No 325
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.5e-09 Score=77.95 Aligned_cols=163 Identities=20% Similarity=0.279 Sum_probs=99.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---chhhhhcCCcEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---LAPMYYRGAAAAI 87 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i 87 (200)
.+|++.|...|||||+-...... ..++..-....+.....-.+....+.+++||.||+-.+.. -....++++.++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 45999999999999997766533 2222111111111111122233567899999999865432 2345688999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEeCcCccCCCCCCHHHHHHH------------HHHcCCcEEEec
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ--GNPNMVMALAGNKADLLDARKVTAEEAQAY------------AQENGLFFMETS 153 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~------------~~~~~~~~~~~S 153 (200)
+|+|..+. -.+.+.++...+.+. ..+++-+-|++.|.|...+.. ..+-.+.+ .....+.|+-+|
T Consensus 107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~-kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF-KIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh-hhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99998764 233343333333332 247788889999999764321 11111111 112234588888
Q ss_pred CCCCCCHHHHHHHHHHhccccCCC
Q 029029 154 AKTATNVNDIFYEIAKRLPRVQPA 177 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~~ 177 (200)
..+ .+|-|.|..+.+++..+.|-
T Consensus 185 IyD-HSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred ecc-hHHHHHHHHHHHHHhhhchh
Confidence 887 46899999999888877653
No 326
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.3e-09 Score=80.25 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=108.1
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcc----------cC----cccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQF----------IE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
......++|..+|+.+-|||||-.++..--. .+ .....-|++......-++-....+...|+||+.
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 4456789999999999999999887754111 00 011223555656666666666778999999998
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEeCcCccCCCCC---CHHHHHHHHHHcC
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM-VMALAGNKADLLDARKV---TAEEAQAYAQENG 146 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 146 (200)
+|-..+..-..+.|+.|+|+...+. .+.+.++.+...+. -+. .+++++||+|+.+++++ ...+.+.+...++
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 8877666667789999999999873 12222333333333 344 47788999999875432 3355777777877
Q ss_pred C-----cEEEecCCCC--------CCHHHHHHHHHHhcccc
Q 029029 147 L-----FFMETSAKTA--------TNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 147 ~-----~~~~~Sa~~~--------~~i~~~~~~l~~~~~~~ 174 (200)
+ |++.-||..- ..|.++++.+.+.+...
T Consensus 163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 6 4666665432 23566666666555443
No 327
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.01 E-value=2.8e-10 Score=84.20 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=85.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccC----------cccCcce----------------eeEEEEEEEEC------
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQESTIG----------------AAFFSQTLAVN------ 55 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~~~~~~----------------~~~~~~~~~~~------ 55 (200)
.+...|.|.|+||+|||||++.|....... ..+|..| ...+....--.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 457899999999999999999987411100 0011111 01111111101
Q ss_pred ------------CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEe
Q 029029 56 ------------DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123 (200)
Q Consensus 56 ------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~n 123 (200)
..++.+.|++|.|-.+.+ .....-+|.+++|.-+.-.+....+..-+.++ .-++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 113558888998743322 33456799999999887654443333333333 2368899
Q ss_pred CcCccCCCCCCHHHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 124 KADLLDARKVTAEEAQAYAQE-------NGLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 124 K~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
|.|..... ....+.+..... +..+++.+||.++.|++++++.|.+....
T Consensus 176 KaD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 176 KADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp --SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 99954321 112222222221 23479999999999999999998876543
No 328
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.6e-09 Score=83.42 Aligned_cols=117 Identities=15% Similarity=0.278 Sum_probs=78.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcc-cCcceeeEEEEEEEECCe------E-------------------------
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDA------T------------------------- 58 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~------------------------- 58 (200)
-=|+++|.-+.||||+|+.|+...++... .+.++++++.....-+.. .
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 35899999999999999999988886532 334444444443322111 0
Q ss_pred --------EEEEEEeCCCcc-----------ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE
Q 029029 59 --------VKFEIWDTAGQE-----------RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA 119 (200)
Q Consensus 59 --------~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i 119 (200)
-.+.++||||.- .+....+-+...+|.++++||....+--++..+.+..++.+. -.+-
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E---dkiR 215 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE---DKIR 215 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc---ceeE
Confidence 119999999932 123334446789999999999876554455555666666552 2367
Q ss_pred EEEeCcCccCC
Q 029029 120 LAGNKADLLDA 130 (200)
Q Consensus 120 vv~nK~D~~~~ 130 (200)
||+||+|..+.
T Consensus 216 VVLNKADqVdt 226 (532)
T KOG1954|consen 216 VVLNKADQVDT 226 (532)
T ss_pred EEeccccccCH
Confidence 78999997654
No 329
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.7e-08 Score=73.61 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=91.6
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCccc------Cc-ceeeEEEE--EEEECCeEEEEEEEeCCCccc---cc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE------ST-IGAAFFSQ--TLAVNDATVKFEIWDTAGQER---YH 73 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~------~~-~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~---~~ 73 (200)
+....++|.|||.+|.|||||+|.|.......... +. ..+..... .+...+-..+++++||||..+ ..
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 44668999999999999999999998644422111 11 11222223 333356677899999999321 11
Q ss_pred cchhh-----------------------hhc--CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029 74 SLAPM-----------------------YYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL 127 (200)
Q Consensus 74 ~~~~~-----------------------~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~ 127 (200)
..|.. .+. .+++++|.+..+.- ++..+ .++++++.+. .-++-|+.|+|-
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDt 196 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADT 196 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeeccc
Confidence 22221 122 35677777776642 33333 3555555553 336778899995
Q ss_pred cCCC--CCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 128 LDAR--KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 128 ~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
...+ ..-.+.+++....+++.+++-.+.+...-+..++.
T Consensus 197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~ 237 (336)
T KOG1547|consen 197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND 237 (336)
T ss_pred ccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence 4321 11223455566778888887776665544444443
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.94 E-value=5.3e-09 Score=75.64 Aligned_cols=94 Identities=23% Similarity=0.203 Sum_probs=65.4
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcC
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENG 146 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 146 (200)
+...+..++..+|++++|+|.+++.. .|...+... ..++|+++|+||+|+.... ...+....+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 46677778899999999999987531 122222222 2468999999999986532 2233333333 2233
Q ss_pred C---cEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 147 L---FFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 147 ~---~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
. .++.+||+++.|+++++++|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 5899999999999999999998764
No 331
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.94 E-value=2.7e-09 Score=73.46 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=41.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
+++++|.+|+|||||+|+|++.... ......|.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999976543 3444555555555555544 5899999995
No 332
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.93 E-value=3.9e-09 Score=73.98 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=41.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
..++|+++|.+|+|||||+|+|.+.. .....+..|++.....+..+. .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 46789999999999999999999543 334456666665555444432 3789999993
No 333
>PRK12289 GTPase RsgA; Reviewed
Probab=98.92 E-value=5.4e-09 Score=82.07 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=68.6
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEE
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFME 151 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (200)
..+....+.++|.+++|+|+.++. ....+.+|+..... .++|+++|+||+|+..... ..........++++++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence 344455688999999999998765 34455677765532 5789999999999864322 12223334567889999
Q ss_pred ecCCCCCCHHHHHHHHHHhc
Q 029029 152 TSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~ 171 (200)
+||.++.|++++++.+...+
T Consensus 155 iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EEcCCCCCHHHHhhhhccce
Confidence 99999999999999987654
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.92 E-value=3.9e-09 Score=74.92 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=43.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
...++++++|.+|+|||||+|+|.+... ...++..|++.....+..+ ..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 3458999999999999999999996443 3445666777665555543 25899999983
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.90 E-value=3.8e-09 Score=73.94 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=64.0
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEe
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMET 152 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
+.+.+....++|++++|+|.+++..... ..+...+. ..++|+++|+||+|+.+... ......+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEE
Confidence 3456677888999999999987543221 12222222 23689999999999853211 111223334456789999
Q ss_pred cCCCCCCHHHHHHHHHHhcc
Q 029029 153 SAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~ 172 (200)
||+++.|++++++.+.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999999988765
No 336
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.90 E-value=6.8e-09 Score=79.74 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=68.3
Q ss_pred hhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCC
Q 029029 77 PMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 155 (200)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (200)
+..+.++|.+++|+|..++. ++..+.+|+..+.. .++|+++|+||+|+.+.. ............+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 34588999999999999887 77788888876654 368899999999986531 1122233344578899999999
Q ss_pred CCCCHHHHHHHHHHh
Q 029029 156 TATNVNDIFYEIAKR 170 (200)
Q Consensus 156 ~~~~i~~~~~~l~~~ 170 (200)
++.|+++++.+|...
T Consensus 148 ~g~gi~~L~~~L~~k 162 (287)
T cd01854 148 TGEGLDELREYLKGK 162 (287)
T ss_pred CCccHHHHHhhhccc
Confidence 999999999887753
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.2e-08 Score=80.10 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=68.7
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC-CHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV-TAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
..++|.+++|++.....++..+..|+..... .++|.++|+||+|+...... ............+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 5779999999999877788888999875543 46889999999999653211 1122333345678899999999999
Q ss_pred CHHHHHHHHHHhcc
Q 029029 159 NVNDIFYEIAKRLP 172 (200)
Q Consensus 159 ~i~~~~~~l~~~~~ 172 (200)
|+++++++|...+.
T Consensus 195 GideL~~~L~~ki~ 208 (347)
T PRK12288 195 GLEELEAALTGRIS 208 (347)
T ss_pred CHHHHHHHHhhCCE
Confidence 99999999987553
No 338
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=6e-08 Score=75.33 Aligned_cols=84 Identities=20% Similarity=0.168 Sum_probs=51.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCc------ceeeEEEEE--------EE--ECCeEEEEEEEeCCCcc---
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST------IGAAFFSQT--------LA--VNDATVKFEIWDTAGQE--- 70 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~------~~~~~~~~~--------~~--~~~~~~~~~i~D~~G~~--- 70 (200)
.+++.|||.|++|||||.|+++.........|. .|+.+.+.. .. -.-....+.|+|++|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999976543222222 222111110 00 01124569999999842
Q ss_pred -ccccchhh---hhcCCcEEEEEEeCC
Q 029029 71 -RYHSLAPM---YYRGAAAAIIVYDIT 93 (200)
Q Consensus 71 -~~~~~~~~---~~~~~d~~i~v~d~~ 93 (200)
.-+.+-.. -++.+|+++.|+|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22223333 357899999999865
No 339
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.5e-09 Score=80.47 Aligned_cols=188 Identities=14% Similarity=0.148 Sum_probs=117.4
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc---cCcccCcce--eeEEEEEE---------------------------E
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQESTIG--AAFFSQTL---------------------------A 53 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~---~~~~~~~~~--~~~~~~~~---------------------------~ 53 (200)
+++..++|.-+|+.--||||++.++.+-.. ..+....+. ..|....+ .
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 457789999999999999999998875221 111111100 00000000 0
Q ss_pred ECCe------EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029 54 VNDA------TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (200)
Q Consensus 54 ~~~~------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~ 127 (200)
..+. -..+.|.|+||++.+...+-.-..-.|++++.+..++.-...+..+.+..+... .-+.++++-||+|+
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDL 191 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhh
Confidence 0000 123889999999876554443344457777777766532222333333333332 22458899999999
Q ss_pred cCCCCC--CHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhccccCCCCCCCCceeccCCCCCCCC
Q 029029 128 LDARKV--TAEEAQAYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTAS 195 (200)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (200)
..+++. ..+.+.++.+. .+.|++++||.-..|++-+.+++.+++.....+.....-.+..|+.+-+++
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkP 264 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKP 264 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCC
Confidence 765432 23445566554 456899999999999999999999999998877776655556676665554
No 340
>PRK00098 GTPase RsgA; Reviewed
Probab=98.85 E-value=1.1e-08 Score=79.07 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=66.0
Q ss_pred hhcCCcEEEEEEeCCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 157 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (200)
.+.++|++++|+|..++..... +.+|+..+.. .++|+++|+||+|+.+... .........+..+.+++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988765444 4677766543 4689999999999863221 122334445567889999999999
Q ss_pred CCHHHHHHHHHHhc
Q 029029 158 TNVNDIFYEIAKRL 171 (200)
Q Consensus 158 ~~i~~~~~~l~~~~ 171 (200)
.|++++++.+..++
T Consensus 153 ~gi~~L~~~l~gk~ 166 (298)
T PRK00098 153 EGLDELKPLLAGKV 166 (298)
T ss_pred ccHHHHHhhccCce
Confidence 99999998875443
No 341
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.83 E-value=9e-09 Score=74.42 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=42.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCccc-------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
..+++++|.+|+|||||+|+|++.... ...+...|++.....+.+.. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 468999999999999999999975431 13345556777666666643 5899999993
No 342
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=79.49 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=48.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
.....+++|+|.|++|||||||+|.+... ...++.+|+|.....+..... +.++||||.-
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 45568899999999999999999995544 556777788887777777553 9999999953
No 343
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.79 E-value=2.4e-08 Score=69.86 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=41.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 68 (200)
....+++++|.+++|||||+++|.+.. .....++.|++........++ .+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 356789999999999999999998543 444556666554433333322 699999998
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.78 E-value=2.4e-08 Score=71.00 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=42.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
..++++++|.+|+|||||+++|.+.... ......+++........+ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999965543 344555566655555553 45899999994
No 345
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.75 E-value=3.2e-08 Score=75.65 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=43.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
...++++++|.+|+|||||+|+|.+.... ......|++.....+.... .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVA-KVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 45689999999999999999999965432 3345566666555555533 5799999997
No 346
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.75 E-value=4.3e-08 Score=75.39 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=44.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
...++++|+|.+|+|||||+|+|.+... ....+..|++.....+..+. .+.++||||.-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 3568999999999999999999996543 23455667776665555543 58899999963
No 347
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=6.9e-08 Score=74.75 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=97.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCccc-----------------------CcceeeEEEEEEEEC-------
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-----------------------STIGAAFFSQTLAVN------- 55 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~------- 55 (200)
+...+++++++|.-.+|||||+-.|..+....-.. ...|.+...+..++.
T Consensus 163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence 34568999999999999999998887655431110 011111111111111
Q ss_pred ---CeEEEEEEEeCCCccccccchhhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 56 ---DATVKFEIWDTAGQERYHSLAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 56 ---~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
...--++|+|.+|+.+|.......+. ..|...+++.....-.+. .++.+-.+... ++|++++++|+|+...
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDR 318 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccc
Confidence 11223999999999988766655443 478888888877543332 23444455444 7899999999999764
Q ss_pred CC------------------------CCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHH
Q 029029 131 RK------------------------VTAEEAQAYAQE----NGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 131 ~~------------------------~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
.- ...+++...++. .-+|+|.+|..+|+|++.+...
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 11 122233333333 2247999999999999865443
No 348
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.70 E-value=8.2e-08 Score=76.08 Aligned_cols=95 Identities=25% Similarity=0.293 Sum_probs=68.4
Q ss_pred ccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH----HHHHH
Q 029029 69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ----AYAQE 144 (200)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~----~~~~~ 144 (200)
.+.+......+...++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+... ....+.+. ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4567777777888999999999987643 12334443332 35789999999999653 23333443 34556
Q ss_pred cCC---cEEEecCCCCCCHHHHHHHHHHh
Q 029029 145 NGL---FFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 145 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998765
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.69 E-value=5.4e-08 Score=68.06 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=40.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
....+++++|.+|+|||||+|.|++.... ......+++......... ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL-KVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc-cccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 45688999999999999999999964422 233333444444444443 35899999983
No 350
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.68 E-value=5.8e-08 Score=72.28 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=90.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccC-cceeeEEEEEEEECCeEEEEEEEeCCCc----------cccccch
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLA 76 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 76 (200)
..+.++++.|.+++|||+||+.+........... ..|.+.......+ +-.+.+.|.||. ..+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhH
Confidence 4578999999999999999999986554433333 5555554455544 346889999992 1233344
Q ss_pred hhhhcCCc---EEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----CCHHHHHHHHH-----
Q 029029 77 PMYYRGAA---AAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----VTAEEAQAYAQ----- 143 (200)
Q Consensus 77 ~~~~~~~d---~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~----- 143 (200)
..|+..-+ -+.+.+|.+.+ ..-+. ..++. .+..++|+.+|.||+|...... -+...+.....
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~---~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAW---LGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHH---HhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 44443322 22334454432 11111 11222 2336899999999999743211 01111111111
Q ss_pred --HcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 144 --ENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 144 --~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
.-..+.+.+|+.++.|++++...+.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhh
Confidence 122356679999999999988776653
No 351
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=1.3e-06 Score=60.15 Aligned_cols=147 Identities=22% Similarity=0.295 Sum_probs=80.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCC-Cccc--------------c-
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA-GQER--------------Y- 72 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~--------------~- 72 (200)
-.+||.+.|+||+||||++.++.. .....--... .+....+...+.-..|.+.|+. |... |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e-~L~~~g~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE-KLREKGYKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH-HHHhcCceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 468999999999999999998873 2221111112 2444555566777778888876 3211 0
Q ss_pred ------c----cchhhhhcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH
Q 029029 73 ------H----SLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141 (200)
Q Consensus 73 ------~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~ 141 (200)
. ...+..+..||++|+ |=-.+ ++.. ..+.+.+...-..++|++..+.+.+. + + .++++
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr-~----P--~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR-H----P--LVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC-C----h--HHHHh
Confidence 0 011122345666554 43333 3332 34444444444467888777776653 1 1 12333
Q ss_pred HHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 142 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
-...++.+| .+..|-+.+++.+...+..
T Consensus 150 k~~~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 150 KKLGGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hhcCCEEEE----EccchhhHHHHHHHHHhcc
Confidence 333333333 5556666888888776643
No 352
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.67 E-value=7.7e-08 Score=67.39 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=57.6
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
.+..+|++++|+|.+++... ......+.+... ..++|+++|+||+|+...... ......+.+.+....+.+||+++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 45789999999999986321 112222223222 345899999999998643211 111222222222335789999999
Q ss_pred CHHHHHHHHHHhcc
Q 029029 159 NVNDIFYEIAKRLP 172 (200)
Q Consensus 159 ~i~~~~~~l~~~~~ 172 (200)
|++++++.+.+.+.
T Consensus 82 ~~~~L~~~l~~~~~ 95 (157)
T cd01858 82 GKGSLIQLLRQFSK 95 (157)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999987643
No 353
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.64 E-value=5.1e-07 Score=70.28 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=96.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCc--------------ceeeEEEEEEEECC----------------
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--------------IGAAFFSQTLAVND---------------- 56 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---------------- 56 (200)
....+.|++.|+.+.|||||.-.|..+....-...+ ...+.....+.+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 456889999999999999998888765553211110 00111111111111
Q ss_pred -----eEEEEEEEeCCCccccccch-h-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 57 -----ATVKFEIWDTAGQERYHSLA-P-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 57 -----~~~~~~i~D~~G~~~~~~~~-~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
.+.-+.|.||.|++.+-... . .+-...|..++++..++.-+ ....+.+-.... -..|+++++||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-~~tkEHLgi~~a---~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-KMTKEHLGIALA---MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-hhhhHhhhhhhh---hcCCEEEEEEecccCc
Confidence 12348999999998764332 2 23457899999998887522 122333333333 3689999999999975
Q ss_pred CCCCC--HHHHHHHH----------------------HH-c--CCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 130 ARKVT--AEEAQAYA----------------------QE-N--GLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 130 ~~~~~--~~~~~~~~----------------------~~-~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
+.... .+++.... -+ . -+|+|.+|+.+|+|++-+.+. ...+...
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~-f~~Lp~r 340 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF-FLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH-HHhCCcc
Confidence 42111 11111111 11 1 248999999999999865554 4445554
No 354
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=4.2e-07 Score=69.66 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=98.3
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHh---Cc-------ccC----cccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVK---GQ-------FIE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~---~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
....+.++|.-+|+..-|||||-.+++. .. +.+ .....-|.+.....+.++.....+-=.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 3456789999999999999999777653 11 110 011223555555666666566667778999998
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC---CCHHHHHHHHHHcCC
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK---VTAEEAQAYAQENGL 147 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 147 (200)
+|-..+..-..+.|+.|+|+..+|. .+.+.++.+..-+...- ..+++++||.|+.++.+ +..-+++++...++.
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 8776666666788999999999984 23444444444444322 34888899999985432 234557777777664
Q ss_pred -----cEEEec---CCCC
Q 029029 148 -----FFMETS---AKTA 157 (200)
Q Consensus 148 -----~~~~~S---a~~~ 157 (200)
|++.=| |.+|
T Consensus 206 ~Gd~~PvI~GSAL~ALeg 223 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEG 223 (449)
T ss_pred CCCCCCeeecchhhhhcC
Confidence 677544 4555
No 355
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.6e-06 Score=70.66 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=79.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCc-ccCcce-------eeE---------------------------------
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIG-------AAF--------------------------------- 47 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-~~~~~~-------~~~--------------------------------- 47 (200)
...||+|.|..++||||++|+++....-+. ..+++. .+-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 468999999999999999999987544221 111110 000
Q ss_pred --EEEEEEECCe-----EEEEEEEeCCCcc---ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe
Q 029029 48 --FSQTLAVNDA-----TVKFEIWDTAGQE---RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV 117 (200)
Q Consensus 48 --~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 117 (200)
....+..+.. .-.+.++|.||.+ ........+...+|++|+|.+..+..+..+ ..++..... ...-
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCCc
Confidence 0000011111 0138889999954 344445556789999999999877533322 222333322 2333
Q ss_pred EEEEEeCcCccCCCCCCHHHHHHHHHHcCC--------cEEEecCCC
Q 029029 118 MALAGNKADLLDARKVTAEEAQAYAQENGL--------FFMETSAKT 156 (200)
Q Consensus 118 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~ 156 (200)
++++.||-|.....+.-.+++.+-...+.+ .+|.+||+.
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 666677779754432222333333223322 477888765
No 356
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.2e-06 Score=71.40 Aligned_cols=139 Identities=15% Similarity=0.147 Sum_probs=82.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
.++++=++|+||+|+||||||+.|.............| +. ..+.+....++|+++|.. .. .+....+-+|++
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D--l~-~miDvaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD--LH-QMIDVAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH--HH-HHHhHHHhhhee
Confidence 35678888999999999999999874322211111111 11 223577788999999943 22 223456789999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH-----HHHHHHH-cCCcEEEecCCC
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE-----AQAYAQE-NGLFFMETSAKT 156 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~-----~~~~~~~-~~~~~~~~Sa~~ 156 (200)
++.+|.+-...++ ..+++..+..++.+ .++-|+|+.|+.......-.. .+.|... .|+++|.+|-..
T Consensus 138 lLlIdgnfGfEME-TmEFLnil~~HGmP--rvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 138 LLLIDGNFGFEME-TMEFLNILISHGMP--RVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEEeccccCceeh-HHHHHHHHhhcCCC--ceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999987542222 23445555555333 366789999986432111111 1122222 256788887554
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.54 E-value=3.7e-07 Score=63.82 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=55.0
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029 84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI 163 (200)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (200)
|++++|+|..++.+... .++.. ......++|+++|+||+|+.....+ ......+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988754332 23331 1222356899999999998543211 11112232334556889999999999999
Q ss_pred HHHHHHhc
Q 029029 164 FYEIAKRL 171 (200)
Q Consensus 164 ~~~l~~~~ 171 (200)
++.+.+..
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99987653
No 358
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.54 E-value=8.1e-07 Score=65.87 Aligned_cols=86 Identities=19% Similarity=0.094 Sum_probs=51.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhC--cccCc---ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc------ch
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LA 76 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~ 76 (200)
.+-.-|+|+|++++|||+|+|.|++. .+.-. ...+.|+-....... .+....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhhH
Confidence 34566899999999999999999976 33211 111222111111111 12457899999999654322 11
Q ss_pred hhhhc--CCcEEEEEEeCCC
Q 029029 77 PMYYR--GAAAAIIVYDITN 94 (200)
Q Consensus 77 ~~~~~--~~d~~i~v~d~~~ 94 (200)
...+. -++++||..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 22233 3888888877764
No 359
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.52 E-value=5.5e-07 Score=69.96 Aligned_cols=162 Identities=18% Similarity=0.187 Sum_probs=90.3
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCc------------------ccCcceee-----EEEEEEE---------
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF------------------QESTIGAA-----FFSQTLA--------- 53 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~-----~~~~~~~--------- 53 (200)
+.-.+++|+++|+..+|||||+-.|..+....- ..+..|.+ ...+...
T Consensus 129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 334589999999999999999988876544211 11111111 1111111
Q ss_pred -----ECCeEEEEEEEeCCCccccccchhhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029 54 -----VNDATVKFEIWDTAGQERYHSLAPMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (200)
Q Consensus 54 -----~~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D 126 (200)
.+...--++|+|.+|++.|-.....- -...|.-++++-.+..- .-...+.+..-.. -.+|+++|++|+|
T Consensus 209 dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa---L~VPVfvVVTKID 284 (641)
T KOG0463|consen 209 DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA---LHVPVFVVVTKID 284 (641)
T ss_pred cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh---hcCcEEEEEEeec
Confidence 11222348999999999876544332 23467777777665421 0111122222122 3678999999999
Q ss_pred ccCCCCCC--HHHHHHHHH--------------------------HcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 127 LLDARKVT--AEEAQAYAQ--------------------------ENGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 127 ~~~~~~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
+...+.+. ...+.++.+ +.-||+|.+|-.+|.|+..+... ++.+.
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF-LNlls 357 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF-LNLLS 357 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH-HhhcC
Confidence 85432111 111222221 12257999999999999865543 44443
No 360
>PRK12288 GTPase RsgA; Reviewed
Probab=98.49 E-value=3e-07 Score=72.30 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=36.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccC--cccCcc----eeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTI----GAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 73 (200)
.++|+|.+|+|||||||+|++..... ..+... .++....-+.+++. ..++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 47999999999999999999643321 111111 13333344444332 3589999986654
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.49 E-value=1.5e-06 Score=67.57 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=79.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcc---------------------cCcceeeEEEEEEE-------------E
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ---------------------ESTIGAAFFSQTLA-------------V 54 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~ 54 (200)
+.--|+++|++|+||||++..|.+....... ....+..+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999988652111000 00011111111000 0
Q ss_pred CCeEEEEEEEeCCCccccccc----hhhh--------hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Q 029029 55 NDATVKFEIWDTAGQERYHSL----APMY--------YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAG 122 (200)
Q Consensus 55 ~~~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~ 122 (200)
....+.+.++||||....... ...+ -...+..++|+|.+.. .+.+.. ...+... -.+.-+|+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~---~~~~giIl 266 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA---VGLTGIIL 266 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh---CCCCEEEE
Confidence 123467999999996432111 1111 1246788999999853 222221 1222211 12346789
Q ss_pred eCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029 123 NKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI 163 (200)
Q Consensus 123 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (200)
||.|.... .-.+...+...++|+..++ +|.+++++
T Consensus 267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 99995322 3335566677799988887 66767654
No 362
>PRK12289 GTPase RsgA; Reviewed
Probab=98.48 E-value=3e-07 Score=72.36 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=36.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcce-------eeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG-------AAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
.++|+|++|+|||||||.|++.... ......+ ++.....+..++. ..++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~-~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVEL-RVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccc-ccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 4799999999999999999954321 1222222 3444444444332 26899999754
No 363
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.46 E-value=2.1e-07 Score=64.89 Aligned_cols=60 Identities=25% Similarity=0.251 Sum_probs=33.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccC--cccCc----ceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE--FQEST----IGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 73 (200)
-.++++|++|+|||||+|.|++..... ..+.. -.++.....+..+. ...++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCccc
Confidence 578999999999999999999653211 11111 11222233333333 25788999976543
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.46 E-value=4.6e-07 Score=64.39 Aligned_cols=89 Identities=22% Similarity=0.144 Sum_probs=59.2
Q ss_pred chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
.....+.++|++++|+|.+++..... ..++..+ .++|.++|+||+|+.+... .....++.+..+..++.+||
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~iSa 83 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFVNA 83 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEEEC
Confidence 33456789999999999987643211 1112211 3468999999999853311 11122222334456889999
Q ss_pred CCCCCHHHHHHHHHHhc
Q 029029 155 KTATNVNDIFYEIAKRL 171 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~~ 171 (200)
+++.|++++.+.+...+
T Consensus 84 ~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 84 KSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCcccHHHHHHHHHHHH
Confidence 99999999999998875
No 365
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.45 E-value=1.8e-05 Score=62.88 Aligned_cols=159 Identities=16% Similarity=0.261 Sum_probs=96.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeE----------EEEEEEE-CCeEEEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAF----------FSQTLAV-NDATVKFE 62 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~----------~~~~~~~-~~~~~~~~ 62 (200)
...+=|.||||..+||||||.+|-..... +..++..|.+. ....+.+ ++..+++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 45678999999999999999998652221 11122222221 2233444 46788999
Q ss_pred EEeCCCcc-------------c------cccc----------hhhhhc--CCcEEEEEEeCC----CHHHHHHH-HHHHH
Q 029029 63 IWDTAGQE-------------R------YHSL----------APMYYR--GAAAAIIVYDIT----NQASFERA-KKWVQ 106 (200)
Q Consensus 63 i~D~~G~~-------------~------~~~~----------~~~~~~--~~d~~i~v~d~~----~~~s~~~~-~~~~~ 106 (200)
++|+.|.- + +..- ++..+. ..-++++.-|-+ .++.+... .+.+.
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999821 0 0000 000111 233667776655 24455444 34555
Q ss_pred HHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC--CCCHHHHHHHHHHhc
Q 029029 107 ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT--ATNVNDIFYEIAKRL 171 (200)
Q Consensus 107 ~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~~ 171 (200)
+++.. ++|+++++|-.+-.. .-..+...++..+++++++++++.. ...|..+++.++-..
T Consensus 175 ELk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 175 ELKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF 236 (492)
T ss_pred HHHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence 66554 789999999998432 2345567778888999999887654 446666666555443
No 366
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.44 E-value=1.1e-06 Score=69.05 Aligned_cols=83 Identities=14% Similarity=-0.054 Sum_probs=52.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECC---------------eEEEEEEEeCCCccc---
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVND---------------ATVKFEIWDTAGQER--- 71 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~--- 71 (200)
+++.|+|.|++|||||.+.|++... .....|..+.........+++ ....+.+.|.||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997654 222212221111122222222 124689999999532
Q ss_pred ----cccchhhhhcCCcEEEEEEeCC
Q 029029 72 ----YHSLAPMYYRGAAAAIIVYDIT 93 (200)
Q Consensus 72 ----~~~~~~~~~~~~d~~i~v~d~~ 93 (200)
.....-..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1112223567899999999974
No 367
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.43 E-value=6.9e-06 Score=66.89 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=62.4
Q ss_pred EEEEEeCCCc-------------cccccchhhhhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCc
Q 029029 60 KFEIWDTAGQ-------------ERYHSLAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKA 125 (200)
Q Consensus 60 ~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~ 125 (200)
...+.|.||- +....+.+++..+.+++|+|+--..-+. -..+..+...+. -.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~D---P~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD---PHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcC---CCCCeeEEEEeec
Confidence 4788899993 2234456678899999999986543221 112223222222 2466789999999
Q ss_pred CccCCCCCCHHHHHHHHHHcCC-----cEEEecCCCC
Q 029029 126 DLLDARKVTAEEAQAYAQENGL-----FFMETSAKTA 157 (200)
Q Consensus 126 D~~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~ 157 (200)
|+.+.+..+++.++++....-. .||.+..-.|
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 9999888899988888765333 3776654443
No 368
>PRK13796 GTPase YqeH; Provisional
Probab=98.42 E-value=5e-07 Score=71.75 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=41.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcc----cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQF----IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
..++.|+|.+|+|||||||+|+.... ....++..|+|.....+.+++. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 35799999999999999999985321 1123455666766666655432 4799999964
No 369
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.41 E-value=7.4e-07 Score=70.68 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=41.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcc----cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQF----IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
.+++++|.+|+|||||+|+|++... ....+...|++.....+..+. .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 5899999999999999999996432 123445566666555555422 367999999653
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.41 E-value=9.3e-07 Score=60.77 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=51.0
Q ss_pred hhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCC
Q 029029 78 MYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 155 (200)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (200)
..+..+|++++|+|..++.+.. .+.+++... ..++|+++++||+|+.+... ........+..+..++.+||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 4568899999999998875432 333443322 24689999999999854321 223445555667789999998
Q ss_pred CCC
Q 029029 156 TAT 158 (200)
Q Consensus 156 ~~~ 158 (200)
++.
T Consensus 81 ~~~ 83 (141)
T cd01857 81 KEN 83 (141)
T ss_pred CCC
Confidence 764
No 371
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=6.5e-06 Score=60.78 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=96.5
Q ss_pred ceeEEEECCCCC--CHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeE--EEEEEEeCCCccccccchhhhhcCCcE
Q 029029 10 NAKLVLLGDVGA--GKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT--VKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 10 ~~~i~vvG~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+..++|+|-+|+ ||.+|+++|....+.....+...+.++.+++.-.... +.+.+.-.- +.+............+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceee
Confidence 346899999998 9999999998776655444444455666655433222 223332221 1111111112234568
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC---------------------------------
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--------------------------------- 132 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--------------------------------- 132 (200)
++++||.+....+..++.|+........ -.++.++||.|.....-
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 8999999999889999999876544321 23566799998643100
Q ss_pred --------C---CHHHHHHHHHHcCCcEEEecCCC------------CCCHHHHHHHHHHh
Q 029029 133 --------V---TAEEAQAYAQENGLFFMETSAKT------------ATNVNDIFYEIAKR 170 (200)
Q Consensus 133 --------~---~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~l~~~ 170 (200)
. .-.....++..+++.+++.++.. ..|++.+|..|-..
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 0 00114566777888899888743 24788888877543
No 372
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.41 E-value=6.3e-07 Score=68.62 Aligned_cols=90 Identities=18% Similarity=0.118 Sum_probs=56.8
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC---------------CeEEEEEEEeCCC
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN---------------DATVKFEIWDTAG 68 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~G 68 (200)
++.....+++.|||.|++|||||.|.|+.........|..+.+-......+. -....++++|++|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 3455678899999999999999999999766654444443322222111111 1245699999998
Q ss_pred ccc----cccchhh---hhcCCcEEEEEEeCC
Q 029029 69 QER----YHSLAPM---YYRGAAAAIIVYDIT 93 (200)
Q Consensus 69 ~~~----~~~~~~~---~~~~~d~~i~v~d~~ 93 (200)
.-. -..+... .++.+|+++-|++..
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 421 2222233 356788888887753
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.39 E-value=2.9e-06 Score=64.70 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=56.0
Q ss_pred eEEEEEEEeCCCccccccch----hh---h-----hcCCcEEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEe
Q 029029 57 ATVKFEIWDTAGQERYHSLA----PM---Y-----YRGAAAAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGN 123 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~n 123 (200)
.++.+.++||||........ .. . -..+|..++|+|.+.. +.+... ..+.... .+.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEE
Confidence 34679999999965322111 11 1 1248999999999753 223222 2222211 13567899
Q ss_pred CcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 124 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
|.|.... .-.+.......++|+..++ +|.+++++.
T Consensus 226 KlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9996432 3335555667788888777 666666543
No 374
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.39 E-value=8.8e-07 Score=67.79 Aligned_cols=100 Identities=22% Similarity=0.197 Sum_probs=64.7
Q ss_pred CCcc-ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc
Q 029029 67 AGQE-RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN 145 (200)
Q Consensus 67 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 145 (200)
||+. .........+..+|++++|+|...+.+... .++.... .++|+++|+||+|+.+... ......+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 4543 222334556789999999999987643222 1122211 2578999999999854211 11112222334
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 146 GLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 146 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
+.+++.+||+++.|++++++.+.+.+.+.
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 56789999999999999999998877554
No 375
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.37 E-value=8.5e-07 Score=66.64 Aligned_cols=58 Identities=22% Similarity=0.156 Sum_probs=36.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccC--cccC----cceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE--FQES----TIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 72 (200)
..++++|++|+|||||+|+|++..... ..+. --.++.....+...+ ..++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 468999999999999999999643321 1111 111333333344432 379999997643
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=98.36 E-value=1.9e-06 Score=67.39 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=54.6
Q ss_pred EEEEEEeCCCcccccc-c---hhhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029 59 VKFEIWDTAGQERYHS-L---APMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~ 132 (200)
+.+.++||+|...... . ...+ ....|..++|+|...... . ......+... -.+--+|+||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~-~~~a~~f~~~---~~~~giIlTKlD~~~~-- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--A-VEQAREFNEA---VGIDGVILTKVDADAK-- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--H-HHHHHHHHhc---CCCCEEEEeeecCCCC--
Confidence 4699999999653211 1 1111 235789999999875421 1 1112222221 1124578999996432
Q ss_pred CCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 133 VTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
.-.+...+...+.|+..++ +|.+++++.
T Consensus 295 --~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 --GGAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 2234555556788888776 688887654
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=98.31 E-value=2.6e-06 Score=67.44 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=58.9
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTA 157 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 157 (200)
...++|.+++|++...+.....+.+++...... +++.++|+||+|+.+.. .+....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 367899999999997443344556666655554 56778899999997531 111222222 34678999999999
Q ss_pred CCHHHHHHHHH
Q 029029 158 TNVNDIFYEIA 168 (200)
Q Consensus 158 ~~i~~~~~~l~ 168 (200)
.|++++..++.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999988875
No 378
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.2e-06 Score=70.91 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=80.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 73 (200)
..--+|.++-+..-|||||+..|+...-. -....+-|.+.....+..-..++.+.++|+||+-++.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 44567889999999999999999763221 0112233555555556555678899999999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~ 127 (200)
........-+|++++.+|..+.-.-... ..+..... .+...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~---~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI---EGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH---ccCceEEEEehhhh
Confidence 9999999999999999999864222111 11111111 23457889999994
No 379
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.29 E-value=9.2e-06 Score=65.36 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=69.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCc-----cc----C-c-----------ccCcceeeEEEEEEEEC------------
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQ-----FI----E-F-----------QESTIGAAFFSQTLAVN------------ 55 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~-----~~----~-~-----------~~~~~~~~~~~~~~~~~------------ 55 (200)
++.-|+++|++||||||++..|.... .. . . +....++.++......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35679999999999999998886311 00 0 0 01111222221110000
Q ss_pred -CeEEEEEEEeCCCcccccc-chh---hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 56 -DATVKFEIWDTAGQERYHS-LAP---MY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 56 -~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
...+.+.|+||+|...... ... .+ ...++-+++|+|......-.. ..+.+... -.+--+|+||.|..
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCC
Confidence 1246899999999643221 111 11 235788999999875422211 12222221 12466789999964
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEe
Q 029029 129 DARKVTAEEAQAYAQENGLFFMET 152 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
.. .-.+.......+.|+..+
T Consensus 253 ar----gG~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 253 AK----GGGALSAVAATKSPIIFI 272 (429)
T ss_pred CC----ccHHhhhHHHHCCCeEEE
Confidence 32 222344444556664444
No 380
>PRK13695 putative NTPase; Provisional
Probab=98.27 E-value=4.4e-05 Score=54.37 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=32.4
Q ss_pred CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029 113 NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 113 ~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
..+.|++++.+|... ......+....+..++++ +.+|-+++.+.+.+.+
T Consensus 124 ~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 124 DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 356789999998542 123445555666777777 5566778888877755
No 381
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.27 E-value=5.4e-06 Score=58.14 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCccccccchhhh--------hcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029 58 TVKFEIWDTAGQERYHSLAPMY--------YRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADL 127 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~ 127 (200)
.....++|++|-.........+ .-..|.+++++|...... ......+...+... =++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 3567889999975433333221 234788999999765322 11112233333332 3568999995
No 382
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.26 E-value=1.7e-06 Score=66.60 Aligned_cols=101 Identities=22% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCCcc-ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH
Q 029029 66 TAGQE-RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE 144 (200)
Q Consensus 66 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 144 (200)
.||+. .-.......+..+|++++|+|..++.+... .++.... .++|+++|+||+|+.+... ......+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 45553 222334456789999999999987643221 1222221 2578999999999854211 1122222334
Q ss_pred cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 145 NGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
.+.+++.+||+++.|++++++.+.+.+...
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999999988876543
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.26 E-value=6.6e-06 Score=65.43 Aligned_cols=94 Identities=27% Similarity=0.298 Sum_probs=60.6
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH----HHHHHcC
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ----AYAQENG 146 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~----~~~~~~~ 146 (200)
.+...........+++++|+|+.+.. ..|...+.... .+.|+++|+||+|+... ....+.+. .+++..+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence 34443333333344999999987732 12334444332 26789999999999643 23333333 3355566
Q ss_pred C---cEEEecCCCCCCHHHHHHHHHHhc
Q 029029 147 L---FFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 147 ~---~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
+ .++.+||+++.|++++++.+.+..
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5 588999999999999999997753
No 384
>PRK00098 GTPase RsgA; Reviewed
Probab=98.24 E-value=2.5e-06 Score=65.95 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=35.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcc-------eeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI-------GAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
..++++|++|+|||||+|.|++..... ..... .++.....+..++. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~-~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELK-TGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCC-CcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 468999999999999999998543321 11111 12222333333322 47899999754
No 385
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.24 E-value=5.5e-06 Score=74.95 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=66.6
Q ss_pred EEEECCCCCCHHHHHHHHHhCcccCcc----cCcceeeEE-EEEEEECCeEEEEEEEeCCCcc--------ccccchhhh
Q 029029 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFF-SQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMY 79 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~ 79 (200)
.+|+|++|+||||+|..- +..++-.. ....++... .....+. -+..++||+|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~---~~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFT---DEAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEec---CCEEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999976 23332111 011111000 0111111 246699999932 122334444
Q ss_pred h---------cCCcEEEEEEeCCCH-----HHH----HHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 80 Y---------RGAAAAIIVYDITNQ-----ASF----ERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 80 ~---------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
+ +-.|++|+++|+.+- +.. ..++..+.++...-....|+.|++||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 3 248999999998642 211 233455666666556789999999999975
No 386
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.24 E-value=6.4e-07 Score=64.72 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHcCCcEE--EecCCCCCCHHHHHHHHHHhccc
Q 029029 134 TAEEAQAYAQENGLFFM--ETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
...-++.++-...+-+| +|||.+++-+.|+++.+.+...+
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 34445666666666677 89999999999999998886654
No 387
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.24 E-value=1.8e-05 Score=56.05 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=66.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeC-CCccc---------------c---
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT-AGQER---------------Y--- 72 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~~---------------~--- 72 (200)
+|++.|++|+|||||+++++. .......+..| +.......++....|.+.|. .|... |
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~-~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE-ELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH-HHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHH-HhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999884 32211112223 33344444555666777776 33110 0
Q ss_pred ----cc----chhhhhcCCcEEEEEEeCCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH
Q 029029 73 ----HS----LAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ 143 (200)
Q Consensus 73 ----~~----~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~ 143 (200)
.. .....+..+| ++++|=-.+ ++. ...|.+.+...-+.++|++.++-+... ...+..+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~-------~~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSD-------NPFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCC-------cHHHHHHHh
Confidence 00 0111123445 555663322 111 123444444433467888888777731 112566666
Q ss_pred HcCCcEEEecCCCCCCH
Q 029029 144 ENGLFFMETSAKTATNV 160 (200)
Q Consensus 144 ~~~~~~~~~Sa~~~~~i 160 (200)
..++.+++++..+...+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 77888888876665544
No 388
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.9e-06 Score=68.84 Aligned_cols=116 Identities=18% Similarity=0.146 Sum_probs=77.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccC----------------cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE----------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 72 (200)
+-.+|.+.-+-.+||||+-++.+.-.-.. .....-|++..+......-..+++.++||||+-.+
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 45678888889999999988876421110 01112233443433333334788999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
.-.....++--|+.|+++|....-.-....-| ..+.+ .++|.+.++||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r---y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR---YNVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh---cCCCeEEEEehhhhc
Confidence 88888889999999999998764222222233 33333 368899999999964
No 389
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=5e-07 Score=71.02 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=88.1
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhC--------cccC--------cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKG--------QFIE--------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 72 (200)
+-.+|.++..-.+||||.-.+++.- .... .....-|.+..+...+++-.++++.++||||+-.+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3457899999999999998888651 1110 01122456777777888888899999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+-....+++--|+++.|||.+..-....+.-| +.....++|-..++||+|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhh
Confidence 99999999999999999999865333343444 334456788999999999754
No 390
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.18 E-value=4.5e-06 Score=64.23 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=37.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCc--cc----CcceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF--QE----STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 73 (200)
..++++|++|+|||||+|.|++...... .. ...+++.....+..... ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 5799999999999999999996433211 11 11113333334444322 3689999986543
No 391
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.17 E-value=3.3e-06 Score=68.01 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=46.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
.+.|.+||.||+||||+||.|.|.+.. ..+.++|.+.+..++.+.. .+.+-|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 599999999999999999999966654 4778888888777776644 5889999995
No 392
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.11 E-value=0.00016 Score=51.63 Aligned_cols=86 Identities=23% Similarity=0.253 Sum_probs=59.6
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 136 (200)
..+.+.++|+|+... ......+..+|.++++...+.. +...+..+++.+... +.++.+|+|+.|... ....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 467899999997642 2334556889999999988753 455556666655543 456789999999643 2345
Q ss_pred HHHHHHHHcCCcEEE
Q 029029 137 EAQAYAQENGLFFME 151 (200)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (200)
+++++.+..+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677778888887653
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=2.9e-05 Score=61.52 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=72.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCc---c--------------------eeeEEEEEEE-------ECCeE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST---I--------------------GAAFFSQTLA-------VNDAT 58 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~---~--------------------~~~~~~~~~~-------~~~~~ 58 (200)
..-.++|+|++|+||||++..|............ . ++......-. ..-..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 3457899999999999999998753211100000 0 1111100000 01124
Q ss_pred EEEEEEeCCCccccccch----hhh--hcCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCC--CCeEEEEEeCcCccC
Q 029029 59 VKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNP--NMVMALAGNKADLLD 129 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~--~~~~ivv~nK~D~~~ 129 (200)
..+.++||+|........ ..+ .....-.++|++.+. .+...++...+......... ..+-=+|+||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 568999999965433221 111 123345678888775 44444443333333211000 012346789999532
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEec
Q 029029 130 ARKVTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S 153 (200)
..-.+..+....+.|+..++
T Consensus 296 ----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ----CccHHHHHHHHHCcCeEEEe
Confidence 34446667777788765554
No 394
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.09 E-value=1.2e-05 Score=58.34 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=69.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCc---------------------ccCcceeeEEEEEEE-------------ECC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF---------------------QESTIGAAFFSQTLA-------------VND 56 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~-------------~~~ 56 (200)
.-|+++|++|+||||.+-+|........ +....++.+...... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4589999999999999888764221110 000112222111100 001
Q ss_pred eEEEEEEEeCCCcccccc----chhhh--hcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 57 ATVKFEIWDTAGQERYHS----LAPMY--YRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
.++.+.++||+|...... ....+ ....+-+++|++.+... .......+++.+ . +--+|+||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~---~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----G---IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----S---TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----c---CceEEEEeecCCC
Confidence 125699999999543221 11111 12577888898887642 232222222211 1 1235789999532
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEec
Q 029029 130 ARKVTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S 153 (200)
..-.+..++...+.|+-.++
T Consensus 155 ----~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 ----RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ----TTHHHHHHHHHHTSEEEEEE
T ss_pred ----CcccceeHHHHhCCCeEEEE
Confidence 34446777777888866664
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.09 E-value=6.7e-06 Score=62.65 Aligned_cols=59 Identities=24% Similarity=0.182 Sum_probs=36.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCccc------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFI------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 73 (200)
..+++|.+|+|||||+|+|...... .....--.++....-+.+++. =.++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 5789999999999999999853221 111111123444444555322 3578999987654
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.08 E-value=3e-05 Score=55.09 Aligned_cols=83 Identities=13% Similarity=0.048 Sum_probs=45.1
Q ss_pred EEEEEEEeCCCcccccc----chhhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 58 TVKFEIWDTAGQERYHS----LAPMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
...+.++|++|...... ....+ ....+.+++|+|...... .+ .+...+.... + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~~- 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDAR- 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCCC-
Confidence 45588899999742211 11111 134899999999865422 22 2333333221 2 35677899996442
Q ss_pred CCCHHHHHHHHHHcCCcEE
Q 029029 132 KVTAEEAQAYAQENGLFFM 150 (200)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~ 150 (200)
...+...+...++|+.
T Consensus 155 ---~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 ---GGAALSIRAVTGKPIK 170 (173)
T ss_pred ---cchhhhhHHHHCcCeE
Confidence 2223335666666654
No 397
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.04 E-value=2.5e-05 Score=62.80 Aligned_cols=114 Identities=17% Similarity=0.248 Sum_probs=79.2
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH----------HHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA----------SFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~ 125 (200)
....+.++|++|+...+.-|..++.+++++|||+++++-. .+.+....++.+.... ..+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 4567999999999999999999999999999999987422 1333344455554432 2578999999999
Q ss_pred CccCC----------------C--CCCHHHHHHHHHH------------cCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 126 DLLDA----------------R--KVTAEEAQAYAQE------------NGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 126 D~~~~----------------~--~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
|+... . .-+.+.+..+... ..+.++.++|.+..+++.+|+.+.+.
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 97321 0 1234555555432 11235588999999999999888764
No 398
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.03 E-value=0.00014 Score=56.64 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=51.1
Q ss_pred EEEEEEeCCCccccccchhhhhc--------CCcEEEEEEeCCCHHH-HHHHHHH-HHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYR--------GAAAAIIVYDITNQAS-FERAKKW-VQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~~-~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
....++++.|..........+.. ..|.+|-|+|..+-.. ...+... ..++... =++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 44777888886544333333322 3577899999876422 2212222 2233222 36889999998
Q ss_pred CCCCCCHHHHHHHHHHc--CCcEEEecCCC
Q 029029 129 DARKVTAEEAQAYAQEN--GLFFMETSAKT 156 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 156 (200)
+... .+..+...+.. ..+++.++...
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~~ 186 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYGD 186 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccccC
Confidence 7653 34444444443 45788887633
No 399
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.02 E-value=4.8e-05 Score=52.69 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D 126 (200)
.+.+.++||+|..... ..++..+|.+|++..++-.+.+..+ + ...+.. --++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~-k-~~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI-K-AGIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh-h-hhHhhh------cCEEEEeCCC
Confidence 4679999998865322 3478899999998877633222111 1 122222 1367899987
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=4e-05 Score=58.51 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=71.7
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEe
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMET 152 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
.+.+.-..+.|-.++|+...+|+- ...+.+++-.... .++..++++||+|+.+......+.........+.+++.+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 344445567888888888888753 3444555544443 356677889999998765444345666777789999999
Q ss_pred cCCCCCCHHHHHHHHHHhccccCC
Q 029029 153 SAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
|++++.+++++.+++..++.---+
T Consensus 148 s~~~~~~~~~l~~~l~~~~svl~G 171 (301)
T COG1162 148 SAKNGDGLEELAELLAGKITVLLG 171 (301)
T ss_pred cCcCcccHHHHHHHhcCCeEEEEC
Confidence 999999999999998877655433
No 401
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.00024 Score=58.61 Aligned_cols=135 Identities=15% Similarity=0.157 Sum_probs=70.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccC----------ccc-------------CcceeeEEEEEEE------E-CCeE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQE-------------STIGAAFFSQTLA------V-NDAT 58 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~~-------------~~~~~~~~~~~~~------~-~~~~ 58 (200)
..-.|+|+|++|+||||++..|....... ... ...+..+...... + ....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35678999999999999998887421100 000 0001111100000 0 0124
Q ss_pred EEEEEEeCCCccccccch----hhhh-cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029 59 VKFEIWDTAGQERYHSLA----PMYY-RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~----~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (200)
+.+.|+||+|........ ..+. ......++|++.+.. ...+...++.+... .+.-+|+||.|.. .
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt----~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDET----G 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCc----c
Confidence 679999999964322110 0010 012234566666532 23333333333332 3466899999953 2
Q ss_pred CHHHHHHHHHHcCCcEEEec
Q 029029 134 TAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S 153 (200)
..-.+.......+.++..++
T Consensus 499 ~lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 499 RFGSALSVVVDHQMPITWVT 518 (559)
T ss_pred chhHHHHHHHHhCCCEEEEe
Confidence 34556777777888866664
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=3.6e-05 Score=61.15 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=71.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCc---------------------ccCcceeeEEEEEE--E----E---C-CeE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEF---------------------QESTIGAAFFSQTL--A----V---N-DAT 58 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~--~----~---~-~~~ 58 (200)
...|+|+|++|+||||++..|........ +....+.......- . + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 46899999999999999999864211000 00001111110000 0 0 0 013
Q ss_pred EEEEEEeCCCccccccc----hhhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029 59 VKFEIWDTAGQERYHSL----APMYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~ 132 (200)
+.+.|+||+|....... ...++ ...+.+++|+|.+-. ...+...+..+... .+--+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 57999999996432111 11222 245677888887532 12223333333322 12346889999543
Q ss_pred CCHHHHHHHHHHcCCcEEEec
Q 029029 133 VTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S 153 (200)
..-.+..++...++|+..++
T Consensus 392 -k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 34446667777788765554
No 403
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.91 E-value=0.00013 Score=53.62 Aligned_cols=74 Identities=30% Similarity=0.308 Sum_probs=43.6
Q ss_pred EEEEeC-CCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC-CeEEEEEeCcCccCCCCCCHHHH
Q 029029 61 FEIWDT-AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEA 138 (200)
Q Consensus 61 ~~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~ivv~nK~D~~~~~~~~~~~~ 138 (200)
+.+.|| +|.+.+. +...+++|.+|+|+|++-+ ++....+. ..+... -+ +++.+|+||.|-. ....
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~e--lg~k~i~~V~NKv~e~------e~~~ 202 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEE--LGIKRIFVVLNKVDEE------EELL 202 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHH--hCCceEEEEEeeccch------hHHH
Confidence 556665 3333332 3346789999999999864 34333332 333332 23 7899999999942 3334
Q ss_pred HHHHHHcCC
Q 029029 139 QAYAQENGL 147 (200)
Q Consensus 139 ~~~~~~~~~ 147 (200)
+..+...+.
T Consensus 203 ~~~~~~~~~ 211 (255)
T COG3640 203 RELAEELGL 211 (255)
T ss_pred HhhhhccCC
Confidence 455555554
No 404
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.91 E-value=5.2e-05 Score=42.95 Aligned_cols=47 Identities=23% Similarity=0.214 Sum_probs=32.0
Q ss_pred hhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029 79 YYRGAAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D 126 (200)
...-.++++|++|++. ..+.+.....++.++... .++|+++|+||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3446789999999996 456777778888888873 5899999999998
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=7.2e-05 Score=60.24 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=70.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCc-----------------------ceeeEEEEEEE-------ECCeE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-----------------------IGAAFFSQTLA-------VNDAT 58 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~~ 58 (200)
..-.|+++|++|+||||++..|.+.......... .|.......-. ..-.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 3458999999999999999988753110000000 01111000000 01123
Q ss_pred EEEEEEeCCCccccc----cchhhhh--cCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 59 VKFEIWDTAGQERYH----SLAPMYY--RGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
..+.++||+|..... .....+. ....-.++|++.+- .....+ ++...... -+-=+|+||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~---~~~~f~~~----~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE---VISAYQGH----GIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH---HHHHhcCC----CCCEEEEEeeeCCC--
Confidence 458999999954321 1122221 22445678888874 333333 22222221 12346889999533
Q ss_pred CCCHHHHHHHHHHcCCcEEEec
Q 029029 132 KVTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S 153 (200)
..-.+..+....++++..++
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt 360 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVT 360 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEE
Confidence 34446677777888866664
No 406
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=2.7e-05 Score=69.39 Aligned_cols=115 Identities=24% Similarity=0.183 Sum_probs=64.3
Q ss_pred EEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEE-CCeEEEEEEEeCCCcc--------ccccchhhh---
Q 029029 13 LVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE--------RYHSLAPMY--- 79 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~--------~~~~~~~~~--- 79 (200)
-+|+|++|+||||++...- ..++- ......+..... +... -.-.-.-.++||.|.. .....|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 3799999999999977532 22211 110011111000 0100 0112347788999932 223344433
Q ss_pred ------hcCCcEEEEEEeCCC-----HHHH----HHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 80 ------YRGAAAAIIVYDITN-----QASF----ERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 80 ------~~~~d~~i~v~d~~~-----~~s~----~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
.+-.|++|+.+|+.+ +..- ..++.-++++...-....|+++++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 235799999999864 2111 1233345566665567899999999999854
No 407
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.89 E-value=0.0002 Score=45.27 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=44.9
Q ss_pred EEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-hhhhhcCCcEEEEEEe
Q 029029 13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-APMYYRGAAAAIIVYD 91 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 91 (200)
+++.|..|+||||+...+...... .|. ....++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999998888732211 111 111111 7999999986533321 1345668899999988
Q ss_pred CCCH
Q 029029 92 ITNQ 95 (200)
Q Consensus 92 ~~~~ 95 (200)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7654
No 408
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.87 E-value=1.9e-05 Score=60.10 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=43.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCccc----CcccCcceeeEEEEE-EEECCeEEEEEEEeCCCc
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI----EFQESTIGAAFFSQT-LAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~ 69 (200)
.+.+.++.|+|-||+|||||||.+...... ......+|++..... +.+.. .-.+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence 356889999999999999999998754432 234455566655544 33322 234899999994
No 409
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.87 E-value=1.2e-05 Score=62.90 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=45.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
...+++.|+|.|++||||+||.|..... -.....+|++..-.....+ -.+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheecc---CCceeccCCce
Confidence 5679999999999999999999996554 4466777777665555543 36899999994
No 410
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.86 E-value=8.3e-05 Score=50.96 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=60.9
Q ss_pred EEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC
Q 029029 14 VLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT 93 (200)
Q Consensus 14 ~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (200)
+.-|..|+|||++.-.+.. .+........-.+. ........+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~-~~~~~~~~~~~vd~---D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLAL-ALAKLGKRVLLLDA---DLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHH-HHHHCCCcEEEEEC---CCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3456789999998666542 11111101110110 00111112789999999753 333356788999999999886
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029 94 NQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (200)
Q Consensus 94 ~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~ 127 (200)
.. ++......++.+.... ...++.+|+|+.+.
T Consensus 78 ~~-s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PT-SITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred hh-HHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 43 4444444555554432 34567889999974
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.86 E-value=0.00024 Score=56.35 Aligned_cols=155 Identities=13% Similarity=0.140 Sum_probs=79.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcc---eeeEEEE-----------------EEEE----------CCeEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI---GAAFFSQ-----------------TLAV----------NDATV 59 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~---~~~~~~~-----------------~~~~----------~~~~~ 59 (200)
.-.|++|||+|+||||-+-.|.....-....... +++.+.. .... .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 6678999999999999998887544311111111 1111111 0000 11244
Q ss_pred EEEEEeCCCccccccc----hhhhhcC--CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029 60 KFEIWDTAGQERYHSL----APMYYRG--AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (200)
Q Consensus 60 ~~~i~D~~G~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (200)
.+.+.||.|...+... ...++.- ..-.-+|++.+.. ...+.+.++.+....- -=+|+||.|-. .
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i----~~~I~TKlDET----~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI----DGLIFTKLDET----T 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc----ceeEEEccccc----C
Confidence 6999999996544322 2222222 2334445565543 3344444444433321 23578999943 3
Q ss_pred CHHHHHHHHHHcCCcEEEecC--CCCCCHHHH-HHHHHHhcccc
Q 029029 134 TAEEAQAYAQENGLFFMETSA--KTATNVNDI-FYEIAKRLPRV 174 (200)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~~-~~~l~~~~~~~ 174 (200)
..-.+.......+.|+..++. .=+.+|... -.||++.+..-
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence 455566777777777554442 223344332 22555555443
No 412
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=3.7e-05 Score=60.45 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=91.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc--c-----------------Ccc----------cCcceeeEEEEEEEECC
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF--I-----------------EFQ----------ESTIGAAFFSQTLAVND 56 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--~-----------------~~~----------~~~~~~~~~~~~~~~~~ 56 (200)
.....++++|+|...+||||+-..++...- . +.+ ...-|.+...-...++-
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 346689999999999999998666543111 0 000 00111222222333334
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH---HHHH---HHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FERA---KKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~---~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
....+.++|+||+..+-..+..-..+||+.++|+.....+- |+.- ++. ..+... ..-...|+++||+|-..-
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREh-a~Lakt-~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAKT-AGVKHLIVLINKMDDPTV 232 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHH-HHHHHh-hccceEEEEEEeccCCcc
Confidence 45679999999998887666666778999999988754221 2211 111 122221 134568999999995321
Q ss_pred CCCCH---HH----HHHHHHHcC------CcEEEecCCCCCCHHHHHH
Q 029029 131 RKVTA---EE----AQAYAQENG------LFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 131 ~~~~~---~~----~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 165 (200)
.++. ++ +..+....+ ..|+++|..+|.++++...
T Consensus 233 -nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 -NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred -CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1111 11 222222222 3589999999999988664
No 413
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.84 E-value=0.00014 Score=47.10 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=49.2
Q ss_pred EEEECC-CCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 13 LVLLGD-VGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 13 i~vvG~-~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
|+|.|. .|+||||+...|.. .+.....+.. . +..+ ..+.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~-~~~~~~~~vl-----~--~d~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAA-ALARRGKRVL-----L--IDLD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHH-HHHhCCCcEE-----E--EeCC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 567774 58999999777653 2211111111 1 1111 1267999999986532 22366778999999988
Q ss_pred CCCHHHHHHHHHHHH
Q 029029 92 ITNQASFERAKKWVQ 106 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~ 106 (200)
.+. .++..+..+++
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 754 35555555544
No 414
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.82 E-value=3.3e-05 Score=56.51 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=74.3
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcC
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D 126 (200)
...|.+.|.+|+...+.-|.+++.++..+++.+..++. ..+++...++.-+...- ..+.++|+++||-|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 34578999999988888899998888877776655432 12333333344333332 24678999999999
Q ss_pred ccCCC----------------CCCHHHHHHHHHH----cC-----C-cEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 127 LLDAR----------------KVTAEEAQAYAQE----NG-----L-FFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 127 ~~~~~----------------~~~~~~~~~~~~~----~~-----~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
+.++. +.+...++.+..+ .+ + --..+.|.+..||.-+|..+.+.+...
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 87642 2233334444322 11 1 123577888899999998887766543
No 415
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.81 E-value=1.9e-05 Score=56.92 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=61.8
Q ss_pred EEEEEeCCCccccccchh---hh---hcC---CcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 60 KFEIWDTAGQERYHSLAP---MY---YRG---AAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 60 ~~~i~D~~G~~~~~~~~~---~~---~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
.+.++|+|||.+.....+ .+ ++. -=++++++|..= -++...+...+..+...-.-..|-|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 488999999875433221 11 111 125566666541 22333444444444443334678888999999865
Q ss_pred CCCCCHHH------------------------HHHH-------HHHcCC-cEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 130 ARKVTAEE------------------------AQAY-------AQENGL-FFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 130 ~~~~~~~~------------------------~~~~-------~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
.. ..++ ..++ ...+++ .|++....+.++++.++..|-..++
T Consensus 179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 31 1111 1111 112333 5778888888888888887766554
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.81 E-value=0.00052 Score=55.77 Aligned_cols=136 Identities=17% Similarity=0.119 Sum_probs=71.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccC----------cccC-----------cceeeEEEEEEEE-----------C
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQES-----------TIGAAFFSQTLAV-----------N 55 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~~~-----------~~~~~~~~~~~~~-----------~ 55 (200)
.++..|+++|++|+||||++..|....... .+.+ ..+..++...... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999988875311100 0000 0111111110000 0
Q ss_pred CeEEEEEEEeCCCccccccc----hhh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 56 DATVKFEIWDTAGQERYHSL----APM--YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
.....+.++||+|....... ... .+..+|.+++|+|.+... ........+... . ...-+|+||.|...
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~--l-~i~gvIlTKlD~~a 246 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA--V-GIGGIIITKLDGTA 246 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc--C-CCCEEEEecccCCC
Confidence 01237999999996543211 111 134688999999987642 111222222221 1 12456789999532
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEec
Q 029029 130 ARKVTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S 153 (200)
..--+.......+.|+..++
T Consensus 247 ----~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 ----KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred ----cccHHHHHHHHHCcCEEEEe
Confidence 22335555666677755553
No 417
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.00017 Score=54.24 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=43.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcc--eeeE--EEEEEEECCeEEEEEEEeCCC
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI--GAAF--FSQTLAVNDATVKFEIWDTAG 68 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~i~D~~G 68 (200)
....++|+-||.+|.|||||++.|.+..+.....+.. ++.. ..+...-.+...++++.||.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 3568999999999999999999999776654433222 1222 222333355677899999999
No 418
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=5.6e-05 Score=60.60 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=73.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccC-c---------------------ccCcceeeEEEEE-E-----EECCeEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-F---------------------QESTIGAAFFSQT-L-----AVNDATVKF 61 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~-~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~ 61 (200)
..-++|+|++||||||++..|....... . +....+....... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4468899999999999999887422100 0 0001111111100 0 001135578
Q ss_pred EEEeCCCccccc-c---chhhhhc-----CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029 62 EIWDTAGQERYH-S---LAPMYYR-----GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (200)
Q Consensus 62 ~i~D~~G~~~~~-~---~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~ 132 (200)
.++||+|..... . .+..++. ...-.++|+|.+... +.+.......... -+--+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~--- 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD--- 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 999999964211 1 1111221 234677888887542 2222222222221 12346889999532
Q ss_pred CCHHHHHHHHHHcCCcEEEecC--CCCCCHHH
Q 029029 133 VTAEEAQAYAQENGLFFMETSA--KTATNVND 162 (200)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~ 162 (200)
..-.+...+...+.|+..++. .-+.++..
T Consensus 374 -~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~ 404 (432)
T PRK12724 374 -FLGSFLELADTYSKSFTYLSVGQEVPFDILN 404 (432)
T ss_pred -CccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence 333466667777887655543 22444444
No 419
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.77 E-value=0.00024 Score=46.26 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=59.5
Q ss_pred EEEEC-CCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 13 LVLLG-DVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 13 i~vvG-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
|+++| ..|+||||+...|-..-.... |............ ...+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence 34444 478999998776653211110 1111111111111 11799999998643 233456788999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEeC
Q 029029 92 ITNQASFERAKKWVQELQAQGNP-NMVMALAGNK 124 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~ivv~nK 124 (200)
.+.. +......+++.+.....+ ...+.+|+|+
T Consensus 74 ~~~~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QDLP-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CChH-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7654 566666777776665433 4456677774
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0005 Score=59.19 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=70.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCc-----------------------ceeeEEEEEE-------EECCeEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-----------------------IGAAFFSQTL-------AVNDATVK 60 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~~ 60 (200)
--|+|+|++|+||||++..|.+......-... .++......- ......+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46899999999999999998853211100000 0111100000 00112346
Q ss_pred EEEEeCCCccccc----cchhhh--hcCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029 61 FEIWDTAGQERYH----SLAPMY--YRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV 133 (200)
Q Consensus 61 ~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~ 133 (200)
+.|+||+|..... ...... ....+-.++|+|.+. .+.+.++...+...... .+-=+|+||.|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~----~i~glIlTKLDEt~---- 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE----DVDGCIITKLDEAT---- 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC----CCCEEEEeccCCCC----
Confidence 9999999943211 111111 224566788888874 33344333322221110 12346799999543
Q ss_pred CHHHHHHHHHHcCCcEEEec
Q 029029 134 TAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S 153 (200)
..-.+..+....++|+..++
T Consensus 338 ~~G~iL~i~~~~~lPI~yit 357 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS 357 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe
Confidence 34446667777788866654
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00014 Score=59.01 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=48.3
Q ss_pred EEEEEEEeCCCccccc----cchhhhhc---CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 58 TVKFEIWDTAGQERYH----SLAPMYYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
.+.+.++||+|..... .....++. ...-..+|++.+-. ...+...+..+... + +--+|+||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~- 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS- 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence 3579999999964332 12222333 23456677777542 12222222222221 1 2257899999532
Q ss_pred CCCCHHHHHHHHHHcCCcEEEecC
Q 029029 131 RKVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
..-.+..+....++|+..++.
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEeC
Confidence 344577777888888766653
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=97.76 E-value=0.00013 Score=59.08 Aligned_cols=86 Identities=15% Similarity=0.047 Sum_probs=47.0
Q ss_pred EEEEEEEeCCCcccccc-ch---hhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 58 TVKFEIWDTAGQERYHS-LA---PMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
.+.+.++||+|...... .. ..+ .-..+.+++|+|..... ........+... .+ ..-+|+||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~--~~-i~giIlTKlD~~~r- 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA--LG-LTGVILTKLDGDAR- 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh--CC-CCEEEEeCccCccc-
Confidence 35699999999543211 11 111 12577889999986532 222223333322 11 23567899995322
Q ss_pred CCCHHHHHHHHHHcCCcEEEec
Q 029029 132 KVTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S 153 (200)
.-.+.......++|+..+.
T Consensus 256 ---gG~alsi~~~~~~PI~fig 274 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIG 274 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEe
Confidence 2225666667778765554
No 423
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.75 E-value=0.00023 Score=57.69 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=48.8
Q ss_pred EEEEEEEeCCCcccccc-chh---hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 58 TVKFEIWDTAGQERYHS-LAP---MY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
.+.+.++||+|...... ... .+ .-..+.+++|+|..... ....+...+.... + ..-+|+||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~-- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDA-- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence 45699999999543211 111 11 23578899999987542 2222333333221 1 2356799999532
Q ss_pred CCCHHHHHHHHHHcCCcEEEecC
Q 029029 132 KVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
..-.+...+...++|+..+..
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 222366667777887665543
No 424
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.73 E-value=3.8e-05 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.+|.|++|||||||++++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998764
No 425
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.002 Score=53.02 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=67.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcc-----------------------eeeEEEEEEE-------ECCeEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI-----------------------GAAFFSQTLA-------VNDATVK 60 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~ 60 (200)
--++|+|++|+||||++..|.+......-.... +......... ..-.+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 468999999999999999988532111000000 0000000000 0011335
Q ss_pred EEEEeCCCccccccc---hhhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029 61 FEIWDTAGQERYHSL---APMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (200)
Q Consensus 61 ~~i~D~~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~ 134 (200)
+.++||+|....... ....+.. ..-.++|+|.+-. ...+......+... ..--+|+||.|.. ..
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~~----~~~g~IlTKlDet----~~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRGP----GLAGCILTKLDEA----AS 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhccC----CCCEEEEeCCCCc----cc
Confidence 889999994322211 1111111 2336788887643 12222222222221 2345678999943 23
Q ss_pred HHHHHHHHHHcCCcEEEec
Q 029029 135 AEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (200)
.-.+..+....++++..++
T Consensus 407 ~G~~l~i~~~~~lPI~yvt 425 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVS 425 (484)
T ss_pred chHHHHHHHHHCCCeEEEe
Confidence 4456777778888866664
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00048 Score=54.67 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=70.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCc----------c-----------cCcceeeEEEEEE--E-------EC-Ce
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------Q-----------ESTIGAAFFSQTL--A-------VN-DA 57 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~----------~-----------~~~~~~~~~~~~~--~-------~~-~~ 57 (200)
+.-.++++|++|+||||++..|........ + ....+..+....- . .. ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 345689999999999999998864211000 0 0001111111000 0 00 02
Q ss_pred EEEEEEEeCCCcccccc----chhhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 58 TVKFEIWDTAGQERYHS----LAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
.+.+.++||+|...... ....+.. ..+..++|.+.... ...+...+..+.. -.+--+|+||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~----l~i~glI~TKLDET~-- 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE----IPIDGFIITKMDETT-- 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc----CCCCEEEEEcccCCC--
Confidence 36799999999743221 1112222 34666777765332 2222233222211 123456899999532
Q ss_pred CCCHHHHHHHHHHcCCcEEEecC
Q 029029 132 KVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
..-.+...+...+.|+..++.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEec
Confidence 344466777778888666653
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.63 E-value=0.00056 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
...+++.|++|+|||+|++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999999853
No 428
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.63 E-value=0.0014 Score=51.16 Aligned_cols=95 Identities=7% Similarity=0.026 Sum_probs=50.0
Q ss_pred EEEEEEeCCCccccccchhhhhc--------CCcEEEEEEeCCCHHHHH-HHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYR--------GAAAAIIVYDITNQASFE-RAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
....++++.|..........+.. ..+.+|.|+|..+..... .......++... =++++||.|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 45678889887655444444322 247899999987532211 111111223222 367899999875
Q ss_pred CCCCCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHH
Q 029029 130 ARKVTAEEAQAYAQEN--GLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~ 164 (200)
.. +.++...+.. ..+++.++ ........++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 32 3444444443 34566554 2223444444
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.63 E-value=4.7e-05 Score=50.65 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 430
>PRK08118 topology modulation protein; Reviewed
Probab=97.61 E-value=5.3e-05 Score=53.60 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
||+|+|++|||||||...|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998874
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.60 E-value=0.00093 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++++|++|+|||||++.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 3689999999999999999885
No 432
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.60 E-value=0.0042 Score=43.66 Aligned_cols=144 Identities=10% Similarity=0.064 Sum_probs=99.1
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
....|+++|..+.++..|.+.+....- . +.-+...-.. .-.|. +.... -...|.++|
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~l~Vh~a~s-------LPLp~--e~~~l----RprIDlIVF 70 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDK------E----FKLKVHLAKS-------LPLPS--ENNNL----RPRIDLIVF 70 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhcc------c----eeEEEEEecc-------CCCcc--cccCC----CceeEEEEE
Confidence 478999999999999999999983110 0 1001110000 01111 11111 235799999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
++|.....++..++.-+..+.....-++ +.++++-....+...+..+++.+++..+++|++.+.-....+...+-+.|.
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL 149 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLL 149 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHH
Confidence 9999999999988887777765544454 445555565555567889999999999999999998888888888888888
Q ss_pred HhccccCC
Q 029029 169 KRLPRVQP 176 (200)
Q Consensus 169 ~~~~~~~~ 176 (200)
+.+..-.+
T Consensus 150 ~~lqi~aG 157 (176)
T PF11111_consen 150 RMLQICAG 157 (176)
T ss_pred HHHHHHcC
Confidence 77665444
No 433
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0018 Score=51.90 Aligned_cols=134 Identities=11% Similarity=0.050 Sum_probs=71.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccC------c-------------------ccCcceeeEEEEEEE-------ECCe
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE------F-------------------QESTIGAAFFSQTLA-------VNDA 57 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~------~-------------------~~~~~~~~~~~~~~~-------~~~~ 57 (200)
+..|+++|++|+||||.+..|....... . +....++.+...... ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4689999999999999988876421100 0 000011111111000 0113
Q ss_pred EEEEEEEeCCCcccccc----chhhhhcC--Cc-EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 58 TVKFEIWDTAGQERYHS----LAPMYYRG--AA-AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
.+.+.++||+|...... -...++.. .+ -.++|+|.+.. ...+.+.+...... .+--+|+||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence 46799999999653221 11122222 23 57888888764 23333333333221 12346889999532
Q ss_pred CCCCHHHHHHHHHHcCCcEEEec
Q 029029 131 RKVTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~S 153 (200)
..-.+..++...+.|+..++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit 346 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT 346 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe
Confidence 34446666777788765554
No 434
>PRK07261 topology modulation protein; Provisional
Probab=97.57 E-value=6.4e-05 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+|+|+|++|||||||.+.|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 435
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.56 E-value=6.5e-05 Score=54.09 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
..=|+|+|++|||||||++.|+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999854
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.56 E-value=7.2e-05 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.||+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999854
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.53 E-value=7.3e-05 Score=51.19 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 029029 13 LVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~ 31 (200)
|+++|++||||||+++.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
No 438
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.50 E-value=2.7e-05 Score=61.10 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=52.1
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc--ccchhhhhcC
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--HSLAPMYYRG 82 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~~~~~~ 82 (200)
......+-|.+||.|++||||+||+|-.... -...|.+|.+-.=..++ --..+.++|+||.--. .......+
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkV-CkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL-- 375 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKV-CKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL-- 375 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhccc-ccccCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh--
Confidence 3456789999999999999999999985443 34555555332111111 1235889999995321 12222222
Q ss_pred CcEEEEEEeCCCHHH
Q 029029 83 AAAAIIVYDITNQAS 97 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s 97 (200)
-+++=|-.+.+|+.
T Consensus 376 -kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 376 -KGVVRVENVKNPED 389 (572)
T ss_pred -hceeeeeecCCHHH
Confidence 35566667777654
No 439
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00058 Score=53.76 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcc---------------------cCcceeeEEEEEEE-----------
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ---------------------ESTIGAAFFSQTLA----------- 53 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~----------- 53 (200)
...++--|.++|..|+||||.+-.|..-....-+ ....++.++.....
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 3345566899999999999988777541110000 00112222221110
Q ss_pred --ECCeEEEEEEEeCCCcccccc-chhh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHH
Q 029029 54 --VNDATVKFEIWDTAGQERYHS-LAPM-----YYRGAAAAIIVYDITNQASFERAKKWVQE 107 (200)
Q Consensus 54 --~~~~~~~~~i~D~~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 107 (200)
+....+.+.|.||.|.+.... +... -.-+.|-+|+|.|.+-..+-+.....+++
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 123456799999999653221 1111 13368999999999976655554444443
No 440
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00074 Score=51.43 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=71.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccC--------c-------------ccCcceeeEEEEEEE---------E-CCeE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE--------F-------------QESTIGAAFFSQTLA---------V-NDAT 58 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~--------~-------------~~~~~~~~~~~~~~~---------~-~~~~ 58 (200)
.-+++++|++|+||||++..+....... . +....+.......-. . ....
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3589999999999999988876431100 0 000011111110000 0 0124
Q ss_pred EEEEEEeCCCccccc-cc---hhhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029 59 VKFEIWDTAGQERYH-SL---APMYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~-~~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~ 132 (200)
+.+.++||+|..... .. +..++ ...+-.++|+|.+.. .+.+..++..+... .+--+|+||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~----~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC----CCCEEEEEeecCCC---
Confidence 679999999965321 11 11122 245678889987642 12223333333221 23456899999543
Q ss_pred CCHHHHHHHHHHcCCcEEEec
Q 029029 133 VTAEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S 153 (200)
..-.+..++...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23346666777788766554
No 441
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.49 E-value=0.0002 Score=53.42 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=80.8
Q ss_pred ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH-------HHHHHHHHHHH---HHHHhC-CCCCeEEEEE
Q 029029 54 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ-------ASFERAKKWVQ---ELQAQG-NPNMVMALAG 122 (200)
Q Consensus 54 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~---~i~~~~-~~~~~~ivv~ 122 (200)
+.-...+|+++|.+|+...+.-|..++.+..++|+|...+.. .+.+.+++.+. .+.... -..+.+|+++
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL 276 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL 276 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence 334456799999999999999999999999999999887641 12334443333 332222 2456799999
Q ss_pred eCcCccCCC----------------------------CCCHHH--HHHH----HHH---------cCCcEEEecCCCCCC
Q 029029 123 NKADLLDAR----------------------------KVTAEE--AQAY----AQE---------NGLFFMETSAKTATN 159 (200)
Q Consensus 123 nK~D~~~~~----------------------------~~~~~~--~~~~----~~~---------~~~~~~~~Sa~~~~~ 159 (200)
||.|+.... ..+... +..+ +.+ +-+-+..+.|.+.++
T Consensus 277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen 356 (379)
T KOG0099|consen 277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN 356 (379)
T ss_pred cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence 999984321 000100 1111 111 113355778899999
Q ss_pred HHHHHHHHHHhccccCCC
Q 029029 160 VNDIFYEIAKRLPRVQPA 177 (200)
Q Consensus 160 i~~~~~~l~~~~~~~~~~ 177 (200)
|..+|+...+.++.++-.
T Consensus 357 IrrVFnDcrdiIqr~hlr 374 (379)
T KOG0099|consen 357 IRRVFNDCRDIIQRMHLR 374 (379)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998888776543
No 442
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.48 E-value=9.5e-05 Score=54.44 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-|+|+|++|||||||++-+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999998753
No 443
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.0001 Score=54.71 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
|.++|++|||||||++.+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999998875
No 444
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.46 E-value=0.00015 Score=49.54 Aligned_cols=20 Identities=45% Similarity=0.777 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
|+|+|++|||||||++.|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999984
No 445
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.45 E-value=0.0049 Score=43.72 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=51.7
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH
Q 029029 60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ 139 (200)
Q Consensus 60 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~ 139 (200)
.+.++|+|+.... .....+..+|.+|++.+.+.. +......+++.+... ......+++|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence 6999999986432 234556889999999887653 444555555555543 22356789999985432 1222234
Q ss_pred HHHHHcCCcEE
Q 029029 140 AYAQENGLFFM 150 (200)
Q Consensus 140 ~~~~~~~~~~~ 150 (200)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44455666654
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.44 E-value=0.00011 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.|.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999998853
No 447
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=9.3e-05 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=20.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
.=++|.||+|+|||||++.|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999654
No 448
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.43 E-value=0.002 Score=53.57 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 029029 13 LVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~ 33 (200)
+++.||+||||||.++.|...
T Consensus 48 LlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999998753
No 449
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0003 Score=57.10 Aligned_cols=136 Identities=19% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCc--------------ccCcceeeEEEEEEE----------------
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF--------------QESTIGAAFFSQTLA---------------- 53 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~---------------- 53 (200)
|++...-.++.++-+..-|||||-..|....-.-. ....-+++..+..+.
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 34555566788999999999999998864221100 011112332222221
Q ss_pred ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC-CCC
Q 029029 54 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-ARK 132 (200)
Q Consensus 54 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~-~~~ 132 (200)
-++.++-+.++|.||+-.+.......++-.|+.++|+|..+.-....-.-+.+.+.. .+.-++++||.|..- +.+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq 168 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQ 168 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhc
Confidence 134467799999999999999888999999999999998764322211111222322 244567899999642 234
Q ss_pred CCHHHHHHHHH
Q 029029 133 VTAEEAQAYAQ 143 (200)
Q Consensus 133 ~~~~~~~~~~~ 143 (200)
.+.+++-+-.+
T Consensus 169 ~~~EeLyqtf~ 179 (842)
T KOG0469|consen 169 LSQEELYQTFQ 179 (842)
T ss_pred CCHHHHHHHHH
Confidence 55555444433
No 450
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.40 E-value=0.0014 Score=53.79 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=46.3
Q ss_pred EEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029 85 AAIIVYDITNQA---SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161 (200)
Q Consensus 85 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (200)
.+|+|=|+-+.. ..+..+..+.....+ ...|+|++++-+-....+...-.....+....++..+........-++
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~--g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MK 273 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSI--GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMK 273 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhc--CCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHH
Confidence 357777765422 233344444433333 678899998877653322111112233335556666666655555566
Q ss_pred HHHHHHHHhcccc
Q 029029 162 DIFYEIAKRLPRV 174 (200)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (200)
..+..++......
T Consensus 274 K~L~ric~~e~~~ 286 (634)
T KOG1970|consen 274 KFLKRICRIEANK 286 (634)
T ss_pred HHHHHHHHHhccc
Confidence 6666666554443
No 451
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.40 E-value=0.00017 Score=43.06 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
|++.|++|+||||+.+.|..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.40 E-value=9.6e-05 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=17.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999743
No 453
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.39 E-value=0.00022 Score=52.34 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..+...|+|.|++|||||||.+.|..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999874
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00021 Score=52.35 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....-|+|+|++|||||||++.|..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 34566788999999999999999974
No 455
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00034 Score=49.56 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCcEE--EecCCCCCCHHHHHHHHHHhccc
Q 029029 135 AEEAQAYAQENGLFFM--ETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 135 ~~~~~~~~~~~~~~~~--~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
..-++.++-...+.+| ++||.+++-+-+++..+.+...+
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE 201 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE 201 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 4445556656666666 89999999999999888877655
No 456
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.34 E-value=0.00021 Score=51.00 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
.-.++|+|++|+|||||++.++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999886
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.33 E-value=0.0012 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-|+|+|++||||||+++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999998743
No 458
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.32 E-value=0.00028 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...-+.|+|++|||||||+++++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 344689999999999999999984
No 459
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.31 E-value=0.0002 Score=53.84 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
++++||+|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999985
No 460
>PRK01889 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.00033 Score=55.63 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
-+++|+|.+|+|||||++.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998643
No 461
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.31 E-value=0.00031 Score=50.15 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-|+|+|++|||||||++.|..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999985
No 462
>PRK06217 hypothetical protein; Validated
Probab=97.30 E-value=0.00023 Score=51.10 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=20.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+|+|+|.+|||||||...|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.29 E-value=0.00025 Score=48.62 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|+|+.|||||||+..|++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 464
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.28 E-value=0.00025 Score=46.07 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q 029029 11 AKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~ 31 (200)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999875
No 465
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.00023 Score=51.69 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q 029029 11 AKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~ 31 (200)
-=.+++||+|||||||++.|.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHH
Confidence 345999999999999999885
No 466
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.28 E-value=0.0022 Score=52.09 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=33.1
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D 126 (200)
...+..+.+++++|+= .++.--+..++++++..++.....++.+++|-.|.+
T Consensus 150 EIlKaLyr~a~iLILD-EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 150 EILKALYRGARLLILD-EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHhcCCCEEEEc-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 3455567888877761 112222345666777777766667888888888876
No 467
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.00027 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...++++|+|++|||||+|+..|+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999884
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.27 E-value=0.00024 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999643
No 469
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.27 E-value=0.0016 Score=49.96 Aligned_cols=109 Identities=12% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc------------
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER------------ 71 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------ 71 (200)
.+...+--+++++|++|-|||++++++....... .... .....+....+|....
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-------------AERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-------------CccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3555666789999999999999999999544322 1111 1123556666655211
Q ss_pred ------------cccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcC
Q 029029 72 ------------YHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (200)
Q Consensus 72 ------------~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D 126 (200)
........++...+=++++|=-+ ..+....+..+..++... .-++|+|.+++.--
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 11112234566777788888533 123334444455555432 36889999987654
No 470
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00024 Score=53.20 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+||.|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999996
No 471
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.26 E-value=0.00029 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=20.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
-.++|+|++|+||||++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 468999999999999999998543
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.26 E-value=0.00027 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998743
No 473
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.26 E-value=0.0019 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.8
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...+|+|.|++|||||||++.|++
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~ 184 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLIS 184 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHc
Confidence 467899999999999999999984
No 474
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.25 E-value=0.00029 Score=51.80 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.2
Q ss_pred eeEEEECCCCCCHHHHHHHH
Q 029029 11 AKLVLLGDVGAGKSSLVLRF 30 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l 30 (200)
+-.+|+|||||||||..+-.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred cceEEEcCCCCCccchhhhH
Confidence 44689999999999976654
No 475
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00026 Score=52.12 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 379999999999999999974
No 476
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.25 E-value=0.00039 Score=50.95 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...-|+|+|++|||||||++.|.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 346689999999999999999984
No 477
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.24 E-value=0.00031 Score=47.15 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999984
No 478
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.24 E-value=0.00026 Score=47.39 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 029029 13 LVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~ 33 (200)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998743
No 479
>PRK03839 putative kinase; Provisional
Probab=97.24 E-value=0.00029 Score=50.42 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.23 E-value=0.00032 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.++|+|++|||||||++.|++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999984
No 481
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.23 E-value=0.00032 Score=49.78 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
=.++|+|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3689999999999999998875
No 482
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.00027 Score=55.21 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 029029 13 LVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~ 33 (200)
++++||+|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999863
No 483
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0024 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=20.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-+|+||||.|+|||||+.-|++
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhc
Confidence 45899999999999999999885
No 484
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.22 E-value=0.00044 Score=49.25 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.7
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHh
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+..+..-|+++|++||||||+.+.|..
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445567899999999999999998863
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.22 E-value=0.00031 Score=51.00 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
|+|.|++|||||||++.|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 486
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.21 E-value=0.00038 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...++|+|+|+|||||||+...|..
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998864
No 487
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.20 E-value=0.00032 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5799999999999999999853
No 488
>PRK14530 adenylate kinase; Provisional
Probab=97.20 E-value=0.00035 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998863
No 489
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.19 E-value=0.0019 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..+|+|.|++|||||||++.|+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999985
No 490
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.18 E-value=0.00033 Score=50.54 Aligned_cols=21 Identities=52% Similarity=0.732 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|+|||||++.+.+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999885
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.18 E-value=0.00035 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
No 492
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00033 Score=51.39 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|+|||||++.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999985
No 493
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.18 E-value=0.00034 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999853
No 494
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.17 E-value=0.00037 Score=51.33 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999985
No 495
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.00037 Score=52.04 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999853
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.16 E-value=0.002 Score=43.65 Aligned_cols=24 Identities=42% Similarity=0.783 Sum_probs=20.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.--|++.|+.|+|||||++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999999854
No 497
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.15 E-value=0.0004 Score=51.05 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999853
No 498
>PRK13949 shikimate kinase; Provisional
Probab=97.15 E-value=0.00046 Score=48.94 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
+|+|+|++||||||+...|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 499
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.15 E-value=0.00039 Score=49.87 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.0
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q 029029 11 AKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~ 31 (200)
--|+|+|++||||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999987
No 500
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00041 Score=50.98 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|+|||||++.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999985
Done!