Query 029029
Match_columns 200
No_of_seqs 147 out of 1781
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 10:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.3E-43 4.4E-48 260.0 20.2 172 5-176 8-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 9.6E-37 3.3E-41 222.2 23.4 170 6-175 4-173 (206)
3 2efe_B Small GTP-binding prote 100.0 1.9E-35 6.5E-40 210.8 24.2 176 1-176 3-178 (181)
4 1vg8_A RAS-related protein RAB 100.0 2.3E-36 8E-41 220.1 18.5 193 6-200 4-207 (207)
5 1r2q_A RAS-related protein RAB 100.0 7.5E-35 2.6E-39 205.4 23.2 168 6-173 2-169 (170)
6 2bov_A RAla, RAS-related prote 100.0 2.4E-35 8.3E-40 214.4 19.4 193 7-200 11-205 (206)
7 1z0j_A RAB-22, RAS-related pro 100.0 2.5E-34 8.4E-39 202.9 23.8 168 6-173 2-169 (170)
8 2ew1_A RAS-related protein RAB 100.0 8.8E-35 3E-39 211.3 21.2 170 6-175 22-191 (201)
9 3tkl_A RAS-related protein RAB 100.0 3E-34 1E-38 207.1 23.8 173 7-179 13-185 (196)
10 2gf0_A GTP-binding protein DI- 100.0 5.2E-35 1.8E-39 211.6 19.4 176 4-181 2-179 (199)
11 1z0f_A RAB14, member RAS oncog 100.0 2.4E-34 8.2E-39 204.5 22.5 168 6-173 11-178 (179)
12 2hup_A RAS-related protein RAB 100.0 8.9E-35 3.1E-39 211.2 20.6 171 6-176 25-196 (201)
13 1ek0_A Protein (GTP-binding pr 100.0 3.4E-34 1.2E-38 202.0 22.9 165 9-173 2-169 (170)
14 2a5j_A RAS-related protein RAB 100.0 2.5E-34 8.6E-39 207.1 22.5 170 5-174 16-185 (191)
15 3cpj_B GTP-binding protein YPT 100.0 1.9E-34 6.3E-39 212.7 22.1 169 7-175 10-178 (223)
16 2fg5_A RAB-22B, RAS-related pr 100.0 1.9E-34 6.4E-39 208.0 21.6 169 7-175 20-188 (192)
17 1z08_A RAS-related protein RAB 100.0 1.1E-34 3.9E-39 204.7 19.8 168 6-173 2-169 (170)
18 2gf9_A RAS-related protein RAB 100.0 4.7E-34 1.6E-38 205.3 23.0 168 7-174 19-186 (189)
19 2y8e_A RAB-protein 6, GH09086P 100.0 3.2E-34 1.1E-38 203.9 21.4 170 5-174 9-178 (179)
20 2fu5_C RAS-related protein RAB 100.0 9.8E-35 3.3E-39 207.6 18.8 169 7-175 5-173 (183)
21 2g6b_A RAS-related protein RAB 100.0 6.9E-34 2.4E-38 202.5 22.8 172 4-175 4-176 (180)
22 2bme_A RAB4A, RAS-related prot 100.0 5.5E-34 1.9E-38 204.2 21.7 169 7-175 7-175 (186)
23 2fn4_A P23, RAS-related protei 100.0 7.1E-34 2.4E-38 202.4 22.0 173 6-179 5-178 (181)
24 3t5g_A GTP-binding protein RHE 100.0 6.2E-34 2.1E-38 203.1 21.4 170 7-177 3-173 (181)
25 2oil_A CATX-8, RAS-related pro 100.0 8.4E-34 2.9E-38 204.6 22.2 169 6-174 21-189 (193)
26 1zbd_A Rabphilin-3A; G protein 100.0 1.1E-33 3.9E-38 205.4 22.3 169 6-174 4-172 (203)
27 3kkq_A RAS-related protein M-R 100.0 1.4E-33 4.7E-38 201.7 22.3 168 5-173 13-182 (183)
28 1z2a_A RAS-related protein RAB 100.0 6.5E-34 2.2E-38 200.3 20.2 165 8-173 3-167 (168)
29 2hxs_A RAB-26, RAS-related pro 100.0 5.1E-34 1.8E-38 202.8 19.8 170 6-175 2-175 (178)
30 1g16_A RAS-related protein SEC 100.0 8.1E-34 2.8E-38 200.2 20.4 165 9-174 2-166 (170)
31 3dz8_A RAS-related protein RAB 100.0 5.1E-35 1.8E-39 210.7 14.4 170 7-176 20-189 (191)
32 3tw8_B RAS-related protein RAB 100.0 1.6E-33 5.5E-38 200.6 22.0 170 6-176 5-174 (181)
33 2p5s_A RAS and EF-hand domain 100.0 4.6E-34 1.6E-38 207.1 19.3 169 5-173 23-197 (199)
34 2o52_A RAS-related protein RAB 100.0 6.3E-34 2.2E-38 206.5 19.9 169 7-175 22-190 (200)
35 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.2E-33 7.7E-38 199.4 22.0 169 5-174 2-175 (177)
36 2il1_A RAB12; G-protein, GDP, 100.0 5.6E-34 1.9E-38 205.6 18.9 168 6-173 22-190 (192)
37 1z06_A RAS-related protein RAB 100.0 1.5E-33 5.1E-38 202.7 20.7 168 6-173 16-188 (189)
38 3reg_A RHO-like small GTPase; 100.0 4.5E-33 1.5E-37 200.9 22.9 171 5-177 18-192 (194)
39 3c5c_A RAS-like protein 12; GD 100.0 1.3E-33 4.6E-38 202.8 19.8 167 5-173 16-186 (187)
40 3cbq_A GTP-binding protein REM 100.0 1E-33 3.4E-38 204.8 19.1 171 6-176 19-191 (195)
41 2j0v_A RAC-like GTP-binding pr 100.0 9.6E-34 3.3E-38 207.2 18.7 172 5-178 4-185 (212)
42 3bc1_A RAS-related protein RAB 100.0 1.8E-33 6.2E-38 202.5 19.7 170 6-175 7-187 (195)
43 2nzj_A GTP-binding protein REM 100.0 2.6E-33 8.9E-38 198.6 20.2 168 8-176 2-172 (175)
44 4dsu_A GTPase KRAS, isoform 2B 100.0 2.2E-33 7.6E-38 201.3 19.8 168 8-177 2-170 (189)
45 3q85_A GTP-binding protein REM 100.0 2.3E-33 8E-38 197.8 19.4 165 10-174 2-168 (169)
46 3q3j_B RHO-related GTP-binding 100.0 2.1E-33 7.2E-38 205.9 19.8 171 6-178 23-208 (214)
47 1u8z_A RAS-related protein RAL 100.0 5.5E-33 1.9E-37 195.3 20.6 164 9-173 3-167 (168)
48 1x3s_A RAS-related protein RAB 100.0 8.8E-33 3E-37 199.2 22.1 168 8-176 13-181 (195)
49 1c1y_A RAS-related protein RAP 100.0 5.7E-33 1.9E-37 195.3 20.3 163 9-172 2-166 (167)
50 3ihw_A Centg3; RAS, centaurin, 100.0 8.8E-33 3E-37 198.1 20.9 164 5-175 15-182 (184)
51 3clv_A RAB5 protein, putative; 100.0 1.9E-32 6.6E-37 198.6 22.9 165 7-174 4-205 (208)
52 3q72_A GTP-binding protein RAD 100.0 5.4E-33 1.8E-37 195.4 19.2 163 10-174 2-165 (166)
53 3oes_A GTPase rhebl1; small GT 100.0 2E-33 6.9E-38 204.0 17.5 170 7-177 21-191 (201)
54 1kao_A RAP2A; GTP-binding prot 100.0 6.9E-33 2.4E-37 194.6 19.1 164 9-173 2-166 (167)
55 3cph_A RAS-related protein SEC 100.0 1.9E-32 6.4E-37 200.2 21.8 166 8-174 18-183 (213)
56 2a9k_A RAS-related protein RAL 100.0 1.3E-32 4.3E-37 196.9 20.4 169 5-174 13-182 (187)
57 1ky3_A GTP-binding protein YPT 100.0 4.1E-33 1.4E-37 198.7 17.2 170 6-175 4-180 (182)
58 2atv_A RERG, RAS-like estrogen 100.0 1.1E-32 3.6E-37 199.4 19.6 168 7-176 25-194 (196)
59 2iwr_A Centaurin gamma 1; ANK 100.0 1.7E-32 5.9E-37 195.1 20.2 162 6-174 3-170 (178)
60 2f7s_A C25KG, RAS-related prot 100.0 3.4E-33 1.2E-37 204.9 16.8 170 6-175 21-201 (217)
61 4djt_A GTP-binding nuclear pro 100.0 5.9E-33 2E-37 203.8 17.4 177 3-179 4-181 (218)
62 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.7E-32 2E-36 193.4 21.8 166 8-175 3-182 (186)
63 2atx_A Small GTP binding prote 100.0 5.5E-32 1.9E-36 195.2 21.6 165 7-173 15-193 (194)
64 2erx_A GTP-binding protein DI- 100.0 3.1E-32 1.1E-36 192.3 19.5 165 9-174 2-168 (172)
65 2q3h_A RAS homolog gene family 100.0 4.4E-32 1.5E-36 196.7 20.7 169 6-176 16-198 (201)
66 2yc2_C IFT27, small RAB-relate 100.0 2.8E-33 9.6E-38 203.7 13.9 168 8-175 18-194 (208)
67 1m7b_A RND3/RHOE small GTP-bin 100.0 4.3E-32 1.5E-36 194.3 19.2 165 7-173 4-183 (184)
68 3con_A GTPase NRAS; structural 100.0 1.4E-31 5E-36 192.3 22.0 169 6-176 17-186 (190)
69 2g3y_A GTP-binding protein GEM 100.0 4.7E-32 1.6E-36 198.0 19.3 170 6-175 33-205 (211)
70 2gco_A H9, RHO-related GTP-bin 100.0 2E-31 6.8E-36 193.5 21.9 165 6-172 21-199 (201)
71 2j1l_A RHO-related GTP-binding 100.0 5.7E-32 1.9E-36 198.2 18.9 168 7-176 31-212 (214)
72 4gzl_A RAS-related C3 botulinu 100.0 8.9E-32 3.1E-36 195.8 19.5 167 3-171 23-203 (204)
73 3l0i_B RAS-related protein RAB 100.0 1.8E-34 6.2E-39 209.2 5.1 168 7-174 30-197 (199)
74 2ce2_X GTPase HRAS; signaling 100.0 3.6E-31 1.2E-35 185.6 21.5 163 9-173 2-165 (166)
75 2fv8_A H6, RHO-related GTP-bin 100.0 3.1E-31 1.1E-35 193.3 21.7 165 8-174 23-201 (207)
76 1gwn_A RHO-related GTP-binding 100.0 9.8E-32 3.4E-36 195.8 18.8 165 7-173 25-204 (205)
77 3bwd_D RAC-like GTP-binding pr 100.0 2.1E-32 7.3E-37 195.1 13.8 166 6-173 4-181 (182)
78 3gj0_A GTP-binding nuclear pro 100.0 4.1E-32 1.4E-36 199.8 15.1 169 5-176 10-178 (221)
79 3t1o_A Gliding protein MGLA; G 100.0 2.7E-32 9.3E-37 196.9 13.5 169 4-176 8-195 (198)
80 2cjw_A GTP-binding protein GEM 100.0 9.9E-31 3.4E-35 188.6 20.7 167 8-174 4-173 (192)
81 2f9l_A RAB11B, member RAS onco 100.0 7.8E-30 2.7E-34 184.8 22.6 167 8-174 3-169 (199)
82 4bas_A ADP-ribosylation factor 100.0 3.9E-31 1.3E-35 191.2 13.5 166 5-176 12-192 (199)
83 1upt_A ARL1, ADP-ribosylation 100.0 9.5E-31 3.3E-35 184.7 13.8 160 8-174 5-170 (171)
84 1oix_A RAS-related protein RAB 100.0 3.9E-29 1.3E-33 180.1 22.5 164 8-171 27-190 (191)
85 1zd9_A ADP-ribosylation factor 100.0 4.3E-31 1.5E-35 189.8 11.5 162 7-174 19-186 (188)
86 1f6b_A SAR1; gtpases, N-termin 100.0 3.6E-30 1.2E-34 186.5 16.5 157 8-171 23-197 (198)
87 2h57_A ADP-ribosylation factor 100.0 9.1E-30 3.1E-34 183.0 18.3 163 6-174 17-188 (190)
88 1m2o_B GTP-binding protein SAR 100.0 1.1E-29 3.8E-34 182.7 18.7 157 8-171 21-190 (190)
89 1zj6_A ADP-ribosylation factor 100.0 4.7E-30 1.6E-34 184.1 16.2 165 8-179 14-184 (187)
90 1ksh_A ARF-like protein 2; sma 100.0 9.8E-30 3.4E-34 182.1 17.2 160 8-174 16-181 (186)
91 1r8s_A ADP-ribosylation factor 100.0 5.9E-31 2E-35 184.6 10.5 157 11-174 1-163 (164)
92 2h17_A ADP-ribosylation factor 100.0 5.4E-30 1.8E-34 182.9 14.5 160 5-171 16-181 (181)
93 2b6h_A ADP-ribosylation factor 100.0 2.2E-30 7.7E-35 186.7 11.1 160 7-173 26-191 (192)
94 1fzq_A ADP-ribosylation factor 100.0 2.2E-29 7.5E-34 179.9 15.4 160 8-174 14-179 (181)
95 2wkq_A NPH1-1, RAS-related C3 100.0 1.7E-28 5.8E-33 190.5 21.0 163 9-173 154-330 (332)
96 3llu_A RAS-related GTP-binding 100.0 1.2E-29 4.2E-34 183.3 13.6 162 5-171 15-195 (196)
97 2zej_A Dardarin, leucine-rich 100.0 3.7E-30 1.3E-34 184.3 10.0 165 10-175 2-180 (184)
98 3th5_A RAS-related C3 botulinu 99.9 5.9E-32 2E-36 196.6 0.0 163 7-171 27-203 (204)
99 2x77_A ADP-ribosylation factor 100.0 3.5E-30 1.2E-34 185.0 9.1 160 8-174 20-185 (189)
100 1moz_A ARL1, ADP-ribosylation 100.0 6.3E-29 2.2E-33 177.3 13.5 160 8-174 16-181 (183)
101 2wji_A Ferrous iron transport 100.0 4.4E-28 1.5E-32 170.6 15.0 155 9-172 2-164 (165)
102 2fh5_B SR-beta, signal recogni 100.0 1E-27 3.6E-32 175.3 16.7 163 6-171 3-214 (214)
103 2lkc_A Translation initiation 100.0 1.2E-27 4E-32 169.9 14.5 160 5-176 3-174 (178)
104 3c5h_A Glucocorticoid receptor 100.0 5.5E-29 1.9E-33 187.0 7.2 166 5-172 14-254 (255)
105 3r7w_A Gtpase1, GTP-binding pr 100.0 4.3E-27 1.5E-31 181.0 16.0 161 9-173 2-181 (307)
106 2qu8_A Putative nucleolar GTP- 100.0 7E-27 2.4E-31 172.7 16.6 165 8-175 27-207 (228)
107 3lvq_E ARF-GAP with SH3 domain 99.9 1.6E-26 5.3E-31 188.8 19.2 167 8-181 320-492 (497)
108 2wjg_A FEOB, ferrous iron tran 99.9 6.1E-27 2.1E-31 167.7 14.0 159 8-175 5-171 (188)
109 3o47_A ADP-ribosylation factor 99.9 5.9E-28 2E-32 187.4 9.2 160 8-174 163-328 (329)
110 1svi_A GTP-binding protein YSX 99.9 3E-27 1E-31 170.2 11.5 158 8-172 21-194 (195)
111 3iev_A GTP-binding protein ERA 99.9 1.3E-26 4.4E-31 178.4 15.5 180 4-189 4-196 (308)
112 3r7w_B Gtpase2, GTP-binding pr 99.9 9.9E-28 3.4E-32 183.7 8.7 157 12-175 1-176 (331)
113 3a1s_A Iron(II) transport prot 99.9 1.5E-26 5E-31 173.8 12.6 156 8-172 3-166 (258)
114 2cxx_A Probable GTP-binding pr 99.9 7.5E-27 2.5E-31 167.4 10.4 157 11-176 2-187 (190)
115 3b1v_A Ferrous iron uptake tra 99.9 1.4E-26 4.8E-31 175.0 12.1 156 9-174 2-165 (272)
116 2gj8_A MNME, tRNA modification 99.9 1.2E-26 4E-31 164.4 10.8 156 9-174 3-167 (172)
117 3dpu_A RAB family protein; roc 99.9 5.4E-27 1.9E-31 192.9 9.3 166 6-175 37-210 (535)
118 2dyk_A GTP-binding protein; GT 99.9 2.9E-26 1E-30 160.0 11.6 150 11-171 2-160 (161)
119 3iby_A Ferrous iron transport 99.9 5.7E-26 2E-30 170.4 12.6 151 11-170 2-164 (256)
120 3pqc_A Probable GTP-binding pr 99.9 1.6E-25 5.6E-30 160.9 14.0 156 8-173 21-194 (195)
121 3i8s_A Ferrous iron transport 99.9 2.8E-26 9.5E-31 173.9 9.6 157 9-174 2-170 (274)
122 4dhe_A Probable GTP-binding pr 99.9 5.9E-26 2E-30 166.9 8.7 165 8-176 27-214 (223)
123 3k53_A Ferrous iron transport 99.9 8.3E-25 2.8E-29 165.6 14.2 159 9-175 2-168 (271)
124 1wf3_A GTP-binding protein; GT 99.9 2.5E-25 8.5E-30 170.5 11.4 167 7-182 4-181 (301)
125 1nrj_B SR-beta, signal recogni 99.9 2.4E-25 8.1E-30 163.2 6.0 144 7-159 9-170 (218)
126 3qq5_A Small GTP-binding prote 99.9 8.4E-25 2.9E-29 174.0 9.4 182 7-197 31-226 (423)
127 3gee_A MNME, tRNA modification 99.9 3.2E-24 1.1E-28 173.3 10.5 156 9-172 232-397 (476)
128 2e87_A Hypothetical protein PH 99.9 5.9E-23 2E-27 161.1 16.0 162 8-174 165-337 (357)
129 2hjg_A GTP-binding protein ENG 99.9 5E-24 1.7E-28 171.3 9.8 161 8-175 173-351 (436)
130 4dcu_A GTP-binding protein ENG 99.9 8.5E-24 2.9E-28 170.8 10.3 162 8-176 193-372 (456)
131 1lnz_A SPO0B-associated GTP-bi 99.9 1.2E-23 4E-28 163.5 10.2 161 11-176 159-333 (342)
132 3sjy_A Translation initiation 99.9 2.6E-22 8.7E-27 159.8 18.0 168 5-175 3-194 (403)
133 3lxw_A GTPase IMAP family memb 99.9 2.3E-23 7.9E-28 155.6 11.1 178 7-184 18-219 (247)
134 1ega_A Protein (GTP-binding pr 99.9 4.3E-23 1.5E-27 158.3 12.7 174 8-189 6-189 (301)
135 3lxx_A GTPase IMAP family memb 99.9 8.6E-23 3E-27 151.8 12.5 172 7-182 26-223 (239)
136 1s0u_A EIF-2-gamma, translatio 99.9 7.3E-22 2.5E-26 157.4 18.0 167 6-174 4-199 (408)
137 1mky_A Probable GTP-binding pr 99.9 6.6E-23 2.2E-27 164.9 9.2 153 11-174 2-167 (439)
138 1xzp_A Probable tRNA modificat 99.9 4.8E-23 1.6E-27 166.5 8.0 153 10-173 243-405 (482)
139 1kk1_A EIF2gamma; initiation o 99.9 1.6E-21 5.6E-26 155.5 16.3 167 6-174 6-201 (410)
140 2xtp_A GTPase IMAP family memb 99.9 1.6E-22 5.6E-27 152.1 9.8 179 7-190 19-224 (260)
141 2hjg_A GTP-binding protein ENG 99.9 8.5E-23 2.9E-27 164.1 8.4 155 10-174 3-166 (436)
142 3t5d_A Septin-7; GTP-binding p 99.9 1.2E-22 4.2E-27 153.9 8.3 165 6-174 4-205 (274)
143 2qtf_A Protein HFLX, GTP-bindi 99.9 1.9E-21 6.5E-26 152.4 15.1 164 10-176 178-357 (364)
144 3cb4_D GTP-binding protein LEP 99.9 1.4E-21 4.7E-26 161.5 14.9 162 9-176 3-185 (599)
145 1wb1_A Translation elongation 99.9 9.9E-22 3.4E-26 159.4 13.6 157 7-172 16-188 (482)
146 3p26_A Elongation factor 1 alp 99.9 7.1E-22 2.4E-26 160.5 11.6 153 8-162 31-227 (483)
147 3geh_A MNME, tRNA modification 99.9 3.1E-22 1.1E-26 161.1 9.1 155 9-175 223-386 (462)
148 1cip_A Protein (guanine nucleo 99.9 4.8E-22 1.6E-26 154.9 9.3 118 58-175 192-346 (353)
149 2ywe_A GTP-binding protein LEP 99.9 8.8E-21 3E-25 156.5 16.7 163 8-176 4-187 (600)
150 4dcu_A GTP-binding protein ENG 99.9 3.8E-22 1.3E-26 161.1 7.7 158 7-174 20-186 (456)
151 3izy_P Translation initiation 99.9 3.3E-23 1.1E-27 168.9 1.1 163 9-176 3-171 (537)
152 1mky_A Probable GTP-binding pr 99.9 7.1E-21 2.4E-25 153.0 14.7 160 9-175 179-357 (439)
153 3j2k_7 ERF3, eukaryotic polype 99.9 8.8E-21 3E-25 152.3 15.0 156 7-165 14-217 (439)
154 2xtz_A Guanine nucleotide-bind 99.9 3.1E-21 1E-25 150.4 12.0 118 57-174 181-346 (354)
155 2c78_A Elongation factor TU-A; 99.9 5.9E-22 2E-26 157.8 7.7 164 6-173 7-212 (405)
156 1d2e_A Elongation factor TU (E 99.9 2.2E-21 7.4E-26 154.1 10.5 161 9-173 2-195 (397)
157 2ged_A SR-beta, signal recogni 99.9 2.4E-21 8.1E-26 139.1 9.3 116 7-131 45-172 (193)
158 2qag_A Septin-2, protein NEDD5 99.8 3.7E-22 1.3E-26 156.5 5.0 162 8-175 35-235 (361)
159 3tr5_A RF-3, peptide chain rel 99.8 1.9E-21 6.5E-26 158.9 9.2 118 8-129 11-148 (528)
160 3ohm_A Guanine nucleotide-bind 99.8 8E-21 2.7E-25 146.2 11.5 119 57-175 165-320 (327)
161 2elf_A Protein translation elo 99.8 2.3E-21 7.9E-26 152.3 8.3 146 12-173 23-180 (370)
162 1g7s_A Translation initiation 99.8 2.2E-20 7.6E-25 154.4 14.4 159 8-173 3-218 (594)
163 1jny_A EF-1-alpha, elongation 99.8 1.2E-21 4.1E-26 157.3 6.7 154 8-164 4-204 (435)
164 1zun_B Sulfate adenylate trans 99.8 1.3E-20 4.4E-25 151.3 11.9 153 8-163 22-214 (434)
165 3izq_1 HBS1P, elongation facto 99.8 4.3E-21 1.5E-25 159.4 9.3 155 7-163 164-362 (611)
166 1f60_A Elongation factor EEF1A 99.8 8.3E-21 2.8E-25 153.2 8.3 155 6-163 3-202 (458)
167 3avx_A Elongation factor TS, e 99.8 2.2E-20 7.5E-25 161.6 9.6 164 6-173 292-486 (1289)
168 1zo1_I IF2, translation initia 99.8 2.2E-21 7.4E-26 157.0 2.9 154 8-170 2-164 (501)
169 1pui_A ENGB, probable GTP-bind 99.8 5E-20 1.7E-24 133.9 9.3 157 8-173 24-199 (210)
170 1r5b_A Eukaryotic peptide chai 99.8 5E-21 1.7E-25 154.8 3.0 154 8-164 41-243 (467)
171 4fid_A G protein alpha subunit 99.8 4E-20 1.4E-24 142.8 7.9 117 57-173 159-328 (340)
172 2aka_B Dynamin-1; fusion prote 99.8 2.3E-20 7.8E-25 142.9 5.0 161 8-171 24-251 (299)
173 3def_A T7I23.11 protein; chlor 99.8 3.2E-19 1.1E-23 134.2 10.9 126 8-135 34-171 (262)
174 3mca_A HBS1, elongation factor 99.8 1.5E-20 5.1E-25 155.7 2.3 163 7-172 174-396 (592)
175 2dy1_A Elongation factor G; tr 99.8 1.2E-18 4.2E-23 146.2 13.3 117 8-128 7-139 (665)
176 1udx_A The GTP-binding protein 99.8 2.1E-18 7.3E-23 136.9 13.6 162 11-176 158-328 (416)
177 1dar_A EF-G, elongation factor 99.8 2.6E-18 9E-23 144.7 13.1 120 6-129 8-143 (691)
178 2qnr_A Septin-2, protein NEDD5 99.8 1E-19 3.5E-24 139.4 3.7 164 7-175 15-216 (301)
179 2h5e_A Peptide chain release f 99.8 6.6E-18 2.2E-22 138.2 14.4 118 8-129 11-148 (529)
180 1h65_A Chloroplast outer envel 99.8 2.1E-18 7.2E-23 130.3 10.6 126 8-135 37-174 (270)
181 3t34_A Dynamin-related protein 99.8 3E-19 1E-23 140.2 5.7 106 60-167 137-255 (360)
182 2j69_A Bacterial dynamin-like 99.8 6.8E-18 2.3E-22 142.3 12.6 111 60-173 175-325 (695)
183 2qag_C Septin-7; cell cycle, c 99.8 2.1E-18 7E-23 137.1 8.5 163 7-173 28-227 (418)
184 2xex_A Elongation factor G; GT 99.8 1.1E-17 3.7E-22 141.0 13.3 125 1-129 1-141 (693)
185 1jwy_B Dynamin A GTPase domain 99.7 5.1E-18 1.7E-22 130.8 9.6 113 59-174 131-263 (315)
186 1u0l_A Probable GTPase ENGC; p 99.7 1.6E-18 5.6E-23 132.8 5.8 137 25-172 32-172 (301)
187 2rdo_7 EF-G, elongation factor 99.7 1.1E-16 3.7E-21 135.1 17.0 120 6-129 6-148 (704)
188 1wxq_A GTP-binding protein; st 99.7 8.3E-19 2.8E-23 138.9 3.1 83 11-95 1-114 (397)
189 1zcb_A G alpha I/13; GTP-bindi 99.7 1.1E-17 3.8E-22 130.8 8.8 117 58-174 200-354 (362)
190 1azs_C GS-alpha; complex (lyas 99.7 3.7E-17 1.3E-21 128.9 10.2 122 51-174 211-386 (402)
191 2wsm_A Hydrogenase expression/ 99.7 6.5E-17 2.2E-21 118.4 7.0 156 9-175 29-216 (221)
192 3p32_A Probable GTPase RV1496/ 99.7 5.1E-17 1.8E-21 127.2 4.8 105 58-173 171-284 (355)
193 1jal_A YCHF protein; nucleotid 99.6 6.2E-15 2.1E-19 114.8 15.6 162 11-172 3-278 (363)
194 3vqt_A RF-3, peptide chain rel 99.6 2E-15 7E-20 124.0 12.5 118 8-129 29-166 (548)
195 2x2e_A Dynamin-1; nitration, h 99.6 7.5E-17 2.6E-21 126.2 3.3 158 9-169 30-254 (353)
196 2hf9_A Probable hydrogenase ni 99.6 1.8E-15 6.1E-20 111.1 8.4 154 9-173 37-224 (226)
197 1n0u_A EF-2, elongation factor 99.6 2.8E-15 9.6E-20 128.7 9.7 118 7-128 16-163 (842)
198 2qpt_A EH domain-containing pr 99.6 3.6E-15 1.2E-19 122.6 9.3 120 8-130 63-233 (550)
199 2www_A Methylmalonic aciduria 99.6 1.1E-14 3.8E-19 113.6 11.6 103 58-172 166-278 (349)
200 2dby_A GTP-binding protein; GD 99.6 3.1E-14 1.1E-18 111.4 12.9 78 11-94 2-111 (368)
201 2p67_A LAO/AO transport system 99.5 4.6E-15 1.6E-19 115.5 5.5 104 58-172 148-260 (341)
202 1yrb_A ATP(GTP)binding protein 99.5 7.8E-14 2.7E-18 104.5 12.1 110 59-173 109-257 (262)
203 4a9a_A Ribosome-interacting GT 99.5 5.5E-14 1.9E-18 110.1 11.4 156 8-166 70-241 (376)
204 4fn5_A EF-G 1, elongation fact 99.5 5.6E-13 1.9E-17 112.9 16.7 117 8-128 11-150 (709)
205 3j25_A Tetracycline resistance 99.5 8.4E-15 2.9E-19 122.5 4.6 162 11-176 3-242 (638)
206 2yv5_A YJEQ protein; hydrolase 99.5 1.4E-13 4.9E-18 105.3 8.7 112 56-170 47-166 (302)
207 3zvr_A Dynamin-1; hydrolase, D 99.5 1.7E-13 5.7E-18 115.5 9.3 157 8-170 49-275 (772)
208 2qm8_A GTPase/ATPase; G protei 99.5 1.4E-13 4.9E-18 106.8 7.6 104 58-172 147-260 (337)
209 3l82_B F-box only protein 4; T 99.4 2.7E-13 9.2E-18 96.9 6.0 106 67-175 110-225 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 5.4E-11 1.8E-15 93.7 15.5 88 6-93 16-126 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 3.1E-12 1E-16 100.6 6.7 89 7-95 19-129 (396)
212 3l2o_B F-box only protein 4; s 99.3 5.1E-12 1.7E-16 94.5 7.4 108 66-175 194-310 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 1.1E-11 3.6E-16 97.4 0.8 143 10-160 162-318 (369)
214 3h2y_A GTPase family protein; 99.0 6.4E-12 2.2E-16 98.6 -2.6 137 10-154 160-311 (368)
215 3sop_A Neuronal-specific septi 99.0 7.9E-10 2.7E-14 83.2 7.1 137 10-152 2-179 (270)
216 2j37_W Signal recognition part 99.0 2.9E-10 1E-14 92.2 4.6 152 8-170 99-310 (504)
217 2qag_B Septin-6, protein NEDD5 99.0 1.8E-09 6.1E-14 85.7 8.4 141 10-155 42-218 (427)
218 1tq4_A IIGP1, interferon-induc 99.0 2.9E-08 9.9E-13 78.7 14.8 159 10-175 69-255 (413)
219 3h2y_A GTPase family protein; 98.9 3.7E-09 1.3E-13 82.9 9.0 97 68-171 55-158 (368)
220 1puj_A YLQF, conserved hypothe 98.8 8.8E-09 3E-13 77.9 5.5 59 8-70 118-176 (282)
221 1puj_A YLQF, conserved hypothe 98.8 1.2E-08 4E-13 77.3 6.1 100 63-172 3-105 (282)
222 3ec1_A YQEH GTPase; atnos1, at 98.8 1.4E-08 4.9E-13 79.7 6.7 97 68-171 57-160 (369)
223 3cnl_A YLQF, putative uncharac 98.7 6.4E-09 2.2E-13 77.9 2.7 58 11-72 100-157 (262)
224 3dm5_A SRP54, signal recogniti 98.5 5.2E-07 1.8E-11 72.0 8.6 140 9-160 99-278 (443)
225 2v3c_C SRP54, signal recogniti 98.4 1.3E-07 4.4E-12 75.6 3.4 133 9-152 98-271 (432)
226 3cnl_A YLQF, putative uncharac 98.4 1.3E-07 4.3E-12 70.8 2.6 94 66-170 4-98 (262)
227 1f5n_A Interferon-induced guan 98.3 5.5E-07 1.9E-11 74.4 5.1 65 7-71 35-103 (592)
228 3kl4_A SRP54, signal recogniti 98.3 6.4E-07 2.2E-11 71.4 4.9 136 9-154 96-273 (433)
229 1t9h_A YLOQ, probable GTPase E 98.2 5E-07 1.7E-11 68.9 2.8 89 73-164 77-168 (307)
230 3szr_A Interferon-induced GTP- 98.2 3.6E-06 1.2E-10 70.2 7.3 23 12-34 47-69 (608)
231 1j8m_F SRP54, signal recogniti 98.2 6.5E-06 2.2E-10 62.6 7.7 91 58-161 180-279 (297)
232 1bif_A 6-phosphofructo-2-kinas 98.1 2.3E-07 7.8E-12 75.1 -1.8 102 8-111 37-148 (469)
233 3e70_C DPA, signal recognition 98.0 1.2E-05 4.2E-10 61.9 6.7 141 8-160 127-307 (328)
234 2rcn_A Probable GTPase ENGC; Y 98.0 2.4E-05 8.2E-10 60.9 8.3 85 79-167 127-213 (358)
235 3q5d_A Atlastin-1; G protein, 97.8 3E-05 1E-09 62.1 5.8 27 7-33 64-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.7 2E-05 6.8E-10 55.4 3.5 23 11-33 1-23 (178)
237 1kgd_A CASK, peripheral plasma 97.6 3.4E-05 1.1E-09 54.2 3.3 21 12-32 7-27 (180)
238 1lvg_A Guanylate kinase, GMP k 97.6 3.5E-05 1.2E-09 55.0 3.3 22 11-32 5-26 (198)
239 4dzz_A Plasmid partitioning pr 97.6 0.0001 3.4E-09 52.5 5.2 85 59-150 76-162 (206)
240 4eun_A Thermoresistant glucoki 97.5 6.3E-05 2.2E-09 53.6 3.5 25 8-32 27-51 (200)
241 3a00_A Guanylate kinase, GMP k 97.5 5.7E-05 2E-09 53.2 3.2 21 13-33 4-24 (186)
242 3tr0_A Guanylate kinase, GMP k 97.5 6E-05 2E-09 53.7 3.3 22 12-33 9-30 (205)
243 1znw_A Guanylate kinase, GMP k 97.5 5.9E-05 2E-09 54.1 3.3 22 12-33 22-43 (207)
244 1zp6_A Hypothetical protein AT 97.5 7.3E-05 2.5E-09 52.7 3.5 24 10-33 9-32 (191)
245 1s96_A Guanylate kinase, GMP k 97.5 7E-05 2.4E-09 54.4 3.3 23 11-33 17-39 (219)
246 1ex7_A Guanylate kinase; subst 97.5 1.4E-05 4.8E-10 56.5 -0.4 21 13-33 4-24 (186)
247 1z6g_A Guanylate kinase; struc 97.5 7E-05 2.4E-09 54.3 3.3 22 11-32 24-45 (218)
248 1t9h_A YLOQ, probable GTPase E 97.5 3.9E-05 1.3E-09 58.5 1.9 23 11-33 174-196 (307)
249 3asz_A Uridine kinase; cytidin 97.4 7.8E-05 2.7E-09 53.4 3.3 25 8-32 4-28 (211)
250 4gp7_A Metallophosphoesterase; 97.4 6.1E-05 2.1E-09 52.4 2.5 20 12-31 11-30 (171)
251 3ney_A 55 kDa erythrocyte memb 97.4 9.7E-05 3.3E-09 52.6 3.3 25 9-33 18-42 (197)
252 3tif_A Uncharacterized ABC tra 97.4 8E-05 2.7E-09 54.6 2.9 21 12-32 33-53 (235)
253 3c8u_A Fructokinase; YP_612366 97.4 9.5E-05 3.3E-09 53.0 3.2 25 8-32 20-44 (208)
254 1htw_A HI0065; nucleotide-bind 97.4 0.00011 3.7E-09 50.6 3.3 23 12-34 35-57 (158)
255 2xxa_A Signal recognition part 97.4 7.4E-05 2.5E-09 59.7 2.6 81 58-149 183-270 (433)
256 3tau_A Guanylate kinase, GMP k 97.3 0.00012 4.1E-09 52.6 3.3 24 10-33 8-31 (208)
257 2onk_A Molybdate/tungstate ABC 97.3 0.00013 4.3E-09 53.8 3.3 21 12-32 26-46 (240)
258 2pcj_A ABC transporter, lipopr 97.3 9.8E-05 3.3E-09 53.8 2.6 21 12-32 32-52 (224)
259 1knq_A Gluconate kinase; ALFA/ 97.3 0.0002 6.8E-09 49.7 4.1 23 10-32 8-30 (175)
260 2i3b_A HCR-ntpase, human cance 97.3 0.00015 5.2E-09 51.3 3.3 22 12-33 3-24 (189)
261 1sgw_A Putative ABC transporte 97.3 0.00013 4.4E-09 52.7 3.0 21 12-32 37-57 (214)
262 3gfo_A Cobalt import ATP-bindi 97.3 0.00013 4.3E-09 54.8 3.0 21 12-32 36-56 (275)
263 3cwq_A Para family chromosome 97.3 0.0033 1.1E-07 45.0 10.3 86 58-150 67-153 (209)
264 2cbz_A Multidrug resistance-as 97.3 0.00013 4.4E-09 53.6 2.9 21 12-32 33-53 (237)
265 1b0u_A Histidine permease; ABC 97.3 0.00013 4.5E-09 54.4 3.0 21 12-32 34-54 (262)
266 2bdt_A BH3686; alpha-beta prot 97.3 0.00016 5.4E-09 50.9 3.3 21 12-32 4-24 (189)
267 2j41_A Guanylate kinase; GMP, 97.3 0.00016 5.3E-09 51.5 3.2 25 10-34 6-30 (207)
268 1kag_A SKI, shikimate kinase I 97.3 0.00017 6E-09 49.8 3.3 22 11-32 5-26 (173)
269 2eyu_A Twitching motility prot 97.3 0.00016 5.6E-09 53.8 3.3 22 11-32 26-47 (261)
270 1g6h_A High-affinity branched- 97.3 0.00014 4.8E-09 54.0 2.9 21 12-32 35-55 (257)
271 2qor_A Guanylate kinase; phosp 97.3 0.00017 5.8E-09 51.5 3.2 23 10-32 12-34 (204)
272 4g1u_C Hemin import ATP-bindin 97.3 0.00014 4.7E-09 54.4 2.8 21 12-32 39-59 (266)
273 2pze_A Cystic fibrosis transme 97.2 0.00016 5.3E-09 52.9 3.0 21 12-32 36-56 (229)
274 2olj_A Amino acid ABC transpor 97.2 0.00015 5.2E-09 54.0 3.0 21 12-32 52-72 (263)
275 1mv5_A LMRA, multidrug resista 97.2 0.00017 5.8E-09 53.2 3.1 21 12-32 30-50 (243)
276 2rcn_A Probable GTPase ENGC; Y 97.2 0.00018 6.1E-09 56.0 3.3 23 12-34 217-239 (358)
277 1ji0_A ABC transporter; ATP bi 97.2 0.00016 5.4E-09 53.2 2.9 21 12-32 34-54 (240)
278 2bbw_A Adenylate kinase 4, AK4 97.2 0.0002 6.9E-09 52.7 3.5 22 10-31 27-48 (246)
279 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00018 6.2E-09 53.2 3.2 22 12-33 31-52 (250)
280 2ff7_A Alpha-hemolysin translo 97.2 0.00017 5.9E-09 53.3 3.1 21 12-32 37-57 (247)
281 1vpl_A ABC transporter, ATP-bi 97.2 0.00017 5.7E-09 53.6 3.0 21 12-32 43-63 (256)
282 2v9p_A Replication protein E1; 97.2 0.0002 6.7E-09 54.6 3.4 22 11-32 127-148 (305)
283 3lw7_A Adenylate kinase relate 97.2 0.0002 7E-09 49.3 3.3 20 11-30 2-21 (179)
284 2zu0_C Probable ATP-dependent 97.2 0.00019 6.6E-09 53.6 3.3 22 12-33 48-69 (267)
285 2qi9_C Vitamin B12 import ATP- 97.2 0.00017 5.9E-09 53.3 3.0 21 12-32 28-48 (249)
286 1ly1_A Polynucleotide kinase; 97.2 0.00025 8.5E-09 49.3 3.6 22 11-32 3-24 (181)
287 3b85_A Phosphate starvation-in 97.2 0.00014 4.9E-09 52.3 2.3 22 12-33 24-45 (208)
288 2ghi_A Transport protein; mult 97.2 0.0002 6.8E-09 53.3 3.1 21 12-32 48-68 (260)
289 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.2E-09 49.3 3.0 21 12-32 3-23 (173)
290 2ihy_A ABC transporter, ATP-bi 97.2 0.00021 7.2E-09 53.8 3.1 21 12-32 49-69 (279)
291 2ixe_A Antigen peptide transpo 97.2 0.0002 6.7E-09 53.7 2.9 21 12-32 47-67 (271)
292 2nq2_C Hypothetical ABC transp 97.2 0.00021 7E-09 53.0 2.9 21 12-32 33-53 (253)
293 3fb4_A Adenylate kinase; psych 97.2 0.00024 8.3E-09 51.0 3.2 21 11-31 1-21 (216)
294 2yz2_A Putative ABC transporte 97.2 0.00021 7.2E-09 53.4 2.9 21 12-32 35-55 (266)
295 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 50.9 3.2 22 11-32 1-22 (216)
296 2cdn_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 49.6 3.7 26 7-32 17-42 (201)
297 1np6_A Molybdopterin-guanine d 97.1 0.00031 1.1E-08 49.0 3.3 22 11-32 7-28 (174)
298 3ec2_A DNA replication protein 97.1 0.00024 8.3E-09 49.6 2.8 23 10-32 38-60 (180)
299 3aez_A Pantothenate kinase; tr 97.1 0.00028 9.6E-09 54.0 3.3 26 7-32 87-112 (312)
300 1qhx_A CPT, protein (chloramph 97.1 0.00029 9.8E-09 49.0 3.1 22 11-32 4-25 (178)
301 1y63_A LMAJ004144AAA protein; 97.1 0.00036 1.2E-08 48.9 3.6 25 9-33 9-33 (184)
302 3uie_A Adenylyl-sulfate kinase 97.1 0.00031 1.1E-08 50.0 3.3 24 9-32 24-47 (200)
303 1cke_A CK, MSSA, protein (cyti 97.1 0.00034 1.2E-08 50.6 3.5 22 11-32 6-27 (227)
304 2pjz_A Hypothetical protein ST 97.1 0.00029 9.8E-09 52.6 3.1 22 12-33 32-53 (263)
305 3lnc_A Guanylate kinase, GMP k 97.1 0.00018 6E-09 52.5 1.9 22 12-33 29-51 (231)
306 3t61_A Gluconokinase; PSI-biol 97.1 0.00032 1.1E-08 49.9 3.2 23 10-32 18-40 (202)
307 2ehv_A Hypothetical protein PH 97.1 0.00032 1.1E-08 51.4 3.2 20 12-31 32-51 (251)
308 2if2_A Dephospho-COA kinase; a 97.1 0.00034 1.2E-08 49.8 3.2 22 11-32 2-23 (204)
309 3vaa_A Shikimate kinase, SK; s 97.1 0.00037 1.3E-08 49.5 3.4 22 11-32 26-47 (199)
310 4a74_A DNA repair and recombin 97.1 0.00031 1E-08 50.8 3.0 21 12-32 27-47 (231)
311 2jaq_A Deoxyguanosine kinase; 97.1 0.00036 1.2E-08 49.5 3.3 21 12-32 2-22 (205)
312 1kht_A Adenylate kinase; phosp 97.1 0.00037 1.3E-08 48.8 3.3 22 11-32 4-25 (192)
313 2yv5_A YJEQ protein; hydrolase 97.1 0.00033 1.1E-08 53.3 3.2 21 11-31 166-186 (302)
314 1u0l_A Probable GTPase ENGC; p 97.1 0.00035 1.2E-08 53.1 3.3 24 11-34 170-193 (301)
315 2rhm_A Putative kinase; P-loop 97.0 0.00037 1.3E-08 49.0 3.2 23 10-32 5-27 (193)
316 3cm0_A Adenylate kinase; ATP-b 97.0 0.00041 1.4E-08 48.5 3.4 22 10-31 4-25 (186)
317 1aky_A Adenylate kinase; ATP:A 97.0 0.00039 1.3E-08 50.2 3.3 24 9-32 3-26 (220)
318 3jvv_A Twitching mobility prot 97.0 0.00035 1.2E-08 54.4 3.2 21 12-32 125-145 (356)
319 2f1r_A Molybdopterin-guanine d 97.0 0.00016 5.6E-09 50.3 1.2 21 12-32 4-24 (171)
320 3nh6_A ATP-binding cassette SU 97.0 0.00021 7.1E-09 54.5 1.8 21 12-32 82-102 (306)
321 3tlx_A Adenylate kinase 2; str 97.0 0.00047 1.6E-08 50.7 3.7 24 9-32 28-51 (243)
322 3tui_C Methionine import ATP-b 97.0 0.00038 1.3E-08 54.3 3.3 21 12-32 56-76 (366)
323 2qt1_A Nicotinamide riboside k 97.0 0.00052 1.8E-08 49.0 3.8 25 8-32 19-43 (207)
324 1lw7_A Transcriptional regulat 97.0 0.00032 1.1E-08 54.8 2.9 24 10-33 170-193 (365)
325 1tev_A UMP-CMP kinase; ploop, 97.0 0.00045 1.5E-08 48.6 3.4 22 10-31 3-24 (196)
326 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00034 1.1E-08 54.5 2.9 22 12-33 32-53 (359)
327 1zd8_A GTP:AMP phosphotransfer 97.0 0.00037 1.3E-08 50.6 3.0 22 10-31 7-28 (227)
328 3iij_A Coilin-interacting nucl 97.0 0.00051 1.7E-08 47.9 3.6 23 9-31 10-32 (180)
329 1nks_A Adenylate kinase; therm 97.0 0.0004 1.4E-08 48.7 3.1 21 12-32 3-23 (194)
330 2wwf_A Thymidilate kinase, put 97.0 0.0005 1.7E-08 49.1 3.6 23 10-32 10-32 (212)
331 2jeo_A Uridine-cytidine kinase 97.0 0.00051 1.7E-08 50.5 3.7 23 10-32 25-47 (245)
332 3sr0_A Adenylate kinase; phosp 97.0 0.00047 1.6E-08 49.5 3.4 22 11-32 1-22 (206)
333 2bbs_A Cystic fibrosis transme 97.0 0.00032 1.1E-08 53.1 2.6 21 12-32 66-86 (290)
334 1jjv_A Dephospho-COA kinase; P 97.0 0.00049 1.7E-08 49.0 3.5 22 11-32 3-24 (206)
335 1z47_A CYSA, putative ABC-tran 97.0 0.00041 1.4E-08 53.9 3.2 22 12-33 43-64 (355)
336 3trf_A Shikimate kinase, SK; a 97.0 0.00046 1.6E-08 48.2 3.3 23 10-32 5-27 (185)
337 2plr_A DTMP kinase, probable t 97.0 0.00051 1.7E-08 49.0 3.5 23 10-32 4-26 (213)
338 2yvu_A Probable adenylyl-sulfa 97.0 0.00063 2.2E-08 47.7 4.0 25 8-32 11-35 (186)
339 1ukz_A Uridylate kinase; trans 97.0 0.00073 2.5E-08 48.0 4.2 23 9-31 14-36 (203)
340 1e4v_A Adenylate kinase; trans 97.0 0.00042 1.4E-08 49.8 2.9 22 11-32 1-22 (214)
341 2yyz_A Sugar ABC transporter, 97.0 0.00044 1.5E-08 53.9 3.2 22 12-33 31-52 (359)
342 3rlf_A Maltose/maltodextrin im 97.0 0.00045 1.5E-08 54.2 3.3 22 12-33 31-52 (381)
343 2it1_A 362AA long hypothetical 97.0 0.00046 1.6E-08 53.8 3.3 22 12-33 31-52 (362)
344 3tqc_A Pantothenate kinase; bi 97.0 0.00064 2.2E-08 52.1 4.0 26 7-32 89-114 (321)
345 1odf_A YGR205W, hypothetical 3 97.0 0.00069 2.3E-08 51.2 4.1 26 7-32 28-53 (290)
346 2pt5_A Shikimate kinase, SK; a 96.9 0.00056 1.9E-08 47.0 3.3 22 11-32 1-22 (168)
347 3b9q_A Chloroplast SRP recepto 96.9 0.00052 1.8E-08 52.2 3.3 23 10-32 100-122 (302)
348 1g29_1 MALK, maltose transport 96.9 0.0005 1.7E-08 53.9 3.2 22 12-33 31-52 (372)
349 2ewv_A Twitching motility prot 96.9 0.00049 1.7E-08 53.9 3.2 23 10-32 136-158 (372)
350 1v43_A Sugar-binding transport 96.9 0.00051 1.8E-08 53.7 3.3 22 12-33 39-60 (372)
351 1via_A Shikimate kinase; struc 96.9 0.00054 1.8E-08 47.5 3.1 21 12-32 6-26 (175)
352 1gvn_B Zeta; postsegregational 96.9 0.00061 2.1E-08 51.4 3.6 25 8-32 31-55 (287)
353 2v54_A DTMP kinase, thymidylat 96.9 0.00062 2.1E-08 48.3 3.4 23 10-32 4-26 (204)
354 2x8a_A Nuclear valosin-contain 96.9 0.00055 1.9E-08 51.3 3.3 20 13-32 47-66 (274)
355 3foz_A TRNA delta(2)-isopenten 96.9 0.00071 2.4E-08 51.5 3.8 32 1-32 1-32 (316)
356 2gza_A Type IV secretion syste 96.9 0.00046 1.6E-08 53.8 2.9 22 11-32 176-197 (361)
357 1rj9_A FTSY, signal recognitio 96.9 0.00078 2.7E-08 51.3 4.0 23 10-32 102-124 (304)
358 1zak_A Adenylate kinase; ATP:A 96.9 0.00054 1.8E-08 49.5 2.9 23 10-32 5-27 (222)
359 1p9r_A General secretion pathw 96.9 0.00057 1.9E-08 54.3 3.2 22 11-32 168-189 (418)
360 2kjq_A DNAA-related protein; s 96.9 0.00039 1.3E-08 47.2 2.0 22 11-32 37-58 (149)
361 3be4_A Adenylate kinase; malar 96.9 0.0006 2.1E-08 49.1 3.1 23 9-31 4-26 (217)
362 3co5_A Putative two-component 96.9 0.0015 5E-08 43.9 4.8 22 10-31 27-48 (143)
363 3umf_A Adenylate kinase; rossm 96.9 0.00095 3.3E-08 48.2 4.1 20 13-32 32-51 (217)
364 2xb4_A Adenylate kinase; ATP-b 96.9 0.00066 2.3E-08 49.2 3.3 22 11-32 1-22 (223)
365 1ak2_A Adenylate kinase isoenz 96.9 0.00071 2.4E-08 49.3 3.4 25 8-32 14-38 (233)
366 3kta_A Chromosome segregation 96.9 0.00062 2.1E-08 47.5 3.0 21 12-32 28-48 (182)
367 1sq5_A Pantothenate kinase; P- 96.9 0.00078 2.7E-08 51.4 3.7 25 8-32 78-102 (308)
368 3end_A Light-independent proto 96.9 0.038 1.3E-06 41.7 13.2 85 58-151 156-242 (307)
369 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00046 1.6E-08 53.2 2.4 22 11-32 172-193 (330)
370 1rz3_A Hypothetical protein rb 96.8 0.00087 3E-08 47.7 3.7 25 8-32 20-44 (201)
371 1ixz_A ATP-dependent metallopr 96.8 0.0007 2.4E-08 49.9 3.3 21 12-32 51-71 (254)
372 2c95_A Adenylate kinase 1; tra 96.8 0.00068 2.3E-08 47.7 3.1 22 10-31 9-30 (196)
373 1xjc_A MOBB protein homolog; s 96.8 0.00078 2.7E-08 46.7 3.3 22 11-32 5-26 (169)
374 3d31_A Sulfate/molybdate ABC t 96.8 0.00041 1.4E-08 53.8 2.0 22 12-33 28-49 (348)
375 1nn5_A Similar to deoxythymidy 96.8 0.00068 2.3E-08 48.5 3.1 24 9-32 8-31 (215)
376 1uf9_A TT1252 protein; P-loop, 96.8 0.00074 2.5E-08 47.8 3.2 25 9-33 7-31 (203)
377 4e22_A Cytidylate kinase; P-lo 96.8 0.00095 3.3E-08 49.3 3.8 22 10-31 27-48 (252)
378 1qf9_A UMP/CMP kinase, protein 96.8 0.00095 3.2E-08 46.7 3.6 22 11-32 7-28 (194)
379 1uj2_A Uridine-cytidine kinase 96.8 0.00084 2.9E-08 49.6 3.4 25 8-32 20-44 (252)
380 3gd7_A Fusion complex of cysti 96.8 0.00067 2.3E-08 53.4 2.9 21 12-32 49-69 (390)
381 2pbr_A DTMP kinase, thymidylat 96.8 0.00087 3E-08 47.0 3.2 21 12-32 2-22 (195)
382 2ze6_A Isopentenyl transferase 96.8 0.00088 3E-08 49.6 3.3 21 12-32 3-23 (253)
383 2p5t_B PEZT; postsegregational 96.8 0.00079 2.7E-08 49.8 3.0 26 7-32 29-54 (253)
384 2z0h_A DTMP kinase, thymidylat 96.8 0.00091 3.1E-08 47.1 3.2 21 12-32 2-22 (197)
385 2og2_A Putative signal recogni 96.8 0.00086 2.9E-08 52.2 3.3 23 10-32 157-179 (359)
386 2oap_1 GSPE-2, type II secreti 96.7 0.0007 2.4E-08 55.3 2.9 22 11-32 261-282 (511)
387 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.001 3.4E-08 45.1 3.2 20 13-32 26-45 (149)
388 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00074 2.5E-08 54.4 3.0 23 11-33 139-161 (460)
389 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0026 8.9E-08 50.9 6.0 65 8-72 65-153 (457)
390 2bwj_A Adenylate kinase 5; pho 96.7 0.0009 3.1E-08 47.2 3.0 23 10-32 12-34 (199)
391 2vli_A Antibiotic resistance p 96.7 0.00059 2E-08 47.5 2.0 22 10-31 5-26 (183)
392 1oxx_K GLCV, glucose, ABC tran 96.7 0.00041 1.4E-08 54.0 1.3 22 12-33 33-54 (353)
393 1e6c_A Shikimate kinase; phosp 96.7 0.001 3.4E-08 45.9 3.1 21 12-32 4-24 (173)
394 1jbk_A CLPB protein; beta barr 96.7 0.0011 3.7E-08 46.1 3.3 23 10-32 43-65 (195)
395 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.8E-08 49.2 3.4 22 11-32 5-26 (260)
396 1vht_A Dephospho-COA kinase; s 96.7 0.0012 4E-08 47.5 3.5 23 10-32 4-26 (218)
397 1in4_A RUVB, holliday junction 96.7 0.00098 3.4E-08 51.4 3.3 22 11-32 52-73 (334)
398 2pez_A Bifunctional 3'-phospho 96.7 0.0012 4.1E-08 45.9 3.4 23 10-32 5-27 (179)
399 2vp4_A Deoxynucleoside kinase; 96.7 0.00098 3.3E-08 48.5 3.1 25 8-32 18-42 (230)
400 1iy2_A ATP-dependent metallopr 96.7 0.001 3.6E-08 49.7 3.3 21 12-32 75-95 (278)
401 1gtv_A TMK, thymidylate kinase 96.7 0.00034 1.2E-08 50.1 0.6 21 12-32 2-22 (214)
402 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0011 3.7E-08 47.9 3.3 21 12-32 25-45 (235)
403 2iyv_A Shikimate kinase, SK; t 96.7 0.00099 3.4E-08 46.5 2.9 21 12-32 4-24 (184)
404 2yhs_A FTSY, cell division pro 96.7 0.001 3.5E-08 53.8 3.3 23 10-32 293-315 (503)
405 1nij_A Hypothetical protein YJ 96.7 0.00069 2.3E-08 51.9 2.1 23 12-34 6-28 (318)
406 3r20_A Cytidylate kinase; stru 96.6 0.0012 4.2E-08 48.2 3.3 23 9-31 8-30 (233)
407 2obl_A ESCN; ATPase, hydrolase 96.6 0.0012 4E-08 51.3 3.2 23 11-33 72-94 (347)
408 3d3q_A TRNA delta(2)-isopenten 96.6 0.0016 5.5E-08 50.2 3.8 22 11-32 8-29 (340)
409 1zuh_A Shikimate kinase; alpha 96.6 0.0015 5.3E-08 44.8 3.3 22 11-32 8-29 (168)
410 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0014 4.8E-08 53.9 3.5 22 12-33 49-70 (538)
411 3nwj_A ATSK2; P loop, shikimat 96.5 0.0015 5.2E-08 48.2 3.2 23 10-32 48-70 (250)
412 2f6r_A COA synthase, bifunctio 96.5 0.0018 6.2E-08 48.6 3.7 24 8-31 73-96 (281)
413 1lv7_A FTSH; alpha/beta domain 96.5 0.0018 6.2E-08 47.7 3.6 23 10-32 45-67 (257)
414 1cr0_A DNA primase/helicase; R 96.5 0.0014 4.7E-08 49.5 3.0 22 12-33 37-58 (296)
415 3euj_A Chromosome partition pr 96.5 0.0015 5.1E-08 52.8 3.3 21 12-32 31-51 (483)
416 1m7g_A Adenylylsulfate kinase; 96.5 0.002 6.7E-08 46.1 3.5 23 10-32 25-47 (211)
417 1n0w_A DNA repair protein RAD5 96.5 0.0018 6.1E-08 47.1 3.3 21 12-32 26-46 (243)
418 1zcb_A G alpha I/13; GTP-bindi 96.5 0.0018 6.3E-08 50.5 3.5 23 8-30 31-53 (362)
419 3ozx_A RNAse L inhibitor; ATP 96.5 0.0014 4.9E-08 53.8 3.0 22 12-33 27-48 (538)
420 2cvh_A DNA repair and recombin 96.5 0.0018 6.2E-08 46.3 3.3 21 12-32 22-42 (220)
421 4eaq_A DTMP kinase, thymidylat 96.5 0.0026 8.9E-08 46.3 4.0 24 9-32 25-48 (229)
422 2p65_A Hypothetical protein PF 96.4 0.0015 5E-08 45.3 2.5 23 10-32 43-65 (187)
423 3b5x_A Lipid A export ATP-bind 96.4 0.0017 5.8E-08 53.9 3.2 21 12-32 371-391 (582)
424 3b60_A Lipid A export ATP-bind 96.4 0.0015 5.1E-08 54.2 2.8 21 12-32 371-391 (582)
425 3j16_B RLI1P; ribosome recycli 96.4 0.0018 6.1E-08 54.0 3.3 22 12-33 105-126 (608)
426 3bos_A Putative DNA replicatio 96.4 0.0022 7.5E-08 46.4 3.4 23 10-32 52-74 (242)
427 2dpy_A FLII, flagellum-specifi 96.4 0.0018 6.2E-08 51.8 3.2 22 12-33 159-180 (438)
428 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.0019 6.5E-08 50.4 3.2 20 13-32 26-45 (365)
429 2w58_A DNAI, primosome compone 96.4 0.0022 7.4E-08 45.4 3.3 22 11-32 55-76 (202)
430 1svm_A Large T antigen; AAA+ f 96.4 0.002 6.9E-08 50.5 3.3 23 10-32 169-191 (377)
431 2grj_A Dephospho-COA kinase; T 96.4 0.0024 8.2E-08 45.2 3.4 25 8-32 10-34 (192)
432 1ltq_A Polynucleotide kinase; 96.4 0.0023 7.7E-08 48.4 3.4 22 11-32 3-24 (301)
433 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0025 8.4E-08 52.4 3.5 22 12-33 314-335 (538)
434 3bk7_A ABC transporter ATP-bin 96.3 0.0022 7.4E-08 53.5 3.1 22 12-33 119-140 (607)
435 3n70_A Transport activator; si 96.3 0.0029 9.8E-08 42.5 3.2 23 10-32 24-46 (145)
436 3bk7_A ABC transporter ATP-bin 96.3 0.0024 8.1E-08 53.3 3.3 22 12-33 384-405 (607)
437 3t15_A Ribulose bisphosphate c 96.3 0.0033 1.1E-07 47.5 3.8 25 8-32 34-58 (293)
438 3ozx_A RNAse L inhibitor; ATP 96.3 0.0022 7.7E-08 52.6 3.0 22 12-33 296-317 (538)
439 3pfi_A Holliday junction ATP-d 96.2 0.018 6.2E-07 44.1 7.9 23 10-32 55-77 (338)
440 2yl4_A ATP-binding cassette SU 96.2 0.0016 5.3E-08 54.3 1.9 21 12-32 372-392 (595)
441 3qf4_B Uncharacterized ABC tra 96.2 0.0017 5.9E-08 54.0 2.1 22 11-32 382-403 (598)
442 3qks_A DNA double-strand break 96.2 0.0032 1.1E-07 44.9 3.2 20 12-31 25-44 (203)
443 3crm_A TRNA delta(2)-isopenten 96.2 0.0033 1.1E-07 48.1 3.4 22 11-32 6-27 (323)
444 3b9p_A CG5977-PA, isoform A; A 96.2 0.003 1E-07 47.6 3.2 23 10-32 54-76 (297)
445 4a82_A Cystic fibrosis transme 96.2 0.0014 4.9E-08 54.3 1.5 22 11-32 368-389 (578)
446 1njg_A DNA polymerase III subu 96.2 0.0032 1.1E-07 45.3 3.2 21 12-32 47-67 (250)
447 2px0_A Flagellar biosynthesis 96.2 0.0028 9.6E-08 48.0 3.0 134 10-153 105-273 (296)
448 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0039 1.3E-07 45.9 3.7 23 10-32 39-61 (262)
449 1nlf_A Regulatory protein REPA 96.2 0.0028 9.7E-08 47.4 3.0 21 12-32 32-52 (279)
450 1tue_A Replication protein E1; 96.2 0.0027 9.2E-08 45.4 2.6 21 12-32 60-80 (212)
451 3h4m_A Proteasome-activating n 96.2 0.0037 1.3E-07 46.7 3.5 23 10-32 51-73 (285)
452 1q3t_A Cytidylate kinase; nucl 96.1 0.004 1.4E-07 45.3 3.6 25 8-32 14-38 (236)
453 3j16_B RLI1P; ribosome recycli 96.1 0.0031 1.1E-07 52.5 3.3 22 13-34 381-402 (608)
454 2chg_A Replication factor C sm 96.1 0.0035 1.2E-07 44.5 3.2 21 12-32 40-60 (226)
455 3cf0_A Transitional endoplasmi 96.1 0.0033 1.1E-07 47.6 3.2 23 10-32 49-71 (301)
456 3gmt_A Adenylate kinase; ssgci 96.1 0.0037 1.3E-07 45.5 3.3 25 8-32 6-30 (230)
457 1vma_A Cell division protein F 96.1 0.0036 1.2E-07 47.6 3.3 86 59-154 187-284 (306)
458 3syl_A Protein CBBX; photosynt 96.1 0.0048 1.6E-07 46.6 4.0 25 8-32 65-89 (309)
459 3qf4_A ABC transporter, ATP-bi 96.1 0.002 6.8E-08 53.5 2.0 21 12-32 371-391 (587)
460 1d2n_A N-ethylmaleimide-sensit 96.1 0.0053 1.8E-07 45.7 4.1 25 8-32 62-86 (272)
461 1l8q_A Chromosomal replication 96.0 0.0039 1.3E-07 47.6 3.2 22 11-32 38-59 (324)
462 4b4t_M 26S protease regulatory 96.0 0.0047 1.6E-07 49.3 3.7 24 9-32 214-237 (434)
463 1qhl_A Protein (cell division 96.0 0.00052 1.8E-08 50.0 -1.7 21 13-33 30-50 (227)
464 2iw3_A Elongation factor 3A; a 96.0 0.0043 1.5E-07 54.3 3.7 24 12-35 463-486 (986)
465 3ake_A Cytidylate kinase; CMP 96.0 0.004 1.4E-07 44.1 3.0 21 12-32 4-24 (208)
466 3zvl_A Bifunctional polynucleo 96.0 0.0059 2E-07 48.5 4.2 24 9-32 257-280 (416)
467 1sxj_E Activator 1 40 kDa subu 96.0 0.0035 1.2E-07 48.4 2.7 20 13-32 39-58 (354)
468 2qmh_A HPR kinase/phosphorylas 96.0 0.004 1.4E-07 44.3 2.8 24 10-33 34-57 (205)
469 1p5z_B DCK, deoxycytidine kina 96.0 0.0025 8.7E-08 47.2 1.8 24 8-31 22-45 (263)
470 4b4t_K 26S protease regulatory 96.0 0.0053 1.8E-07 48.9 3.7 24 9-32 205-228 (428)
471 1pzn_A RAD51, DNA repair and r 95.9 0.0041 1.4E-07 48.3 3.0 22 12-33 133-154 (349)
472 1a7j_A Phosphoribulokinase; tr 95.9 0.0021 7.1E-08 48.6 1.2 24 9-32 4-27 (290)
473 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0069 2.4E-07 46.9 4.0 24 9-32 23-46 (359)
474 4b4t_L 26S protease subunit RP 95.9 0.0059 2E-07 48.8 3.7 24 9-32 214-237 (437)
475 2o5v_A DNA replication and rep 95.9 0.038 1.3E-06 42.9 8.2 21 12-32 28-48 (359)
476 2dr3_A UPF0273 protein PH0284; 95.9 0.0047 1.6E-07 44.9 3.0 21 12-32 25-45 (247)
477 3qkt_A DNA double-strand break 95.9 0.0051 1.7E-07 47.4 3.2 20 13-32 26-45 (339)
478 2qby_A CDC6 homolog 1, cell di 95.9 0.0046 1.6E-07 48.0 3.0 23 10-32 45-67 (386)
479 2ocp_A DGK, deoxyguanosine kin 95.9 0.0053 1.8E-07 44.8 3.2 23 10-32 2-24 (241)
480 1sxj_C Activator 1 40 kDa subu 95.9 0.0051 1.7E-07 47.3 3.2 21 13-33 49-69 (340)
481 3eie_A Vacuolar protein sortin 95.9 0.007 2.4E-07 46.3 3.9 24 9-32 50-73 (322)
482 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.007 2.4E-07 46.3 3.9 24 9-32 44-67 (322)
483 2h92_A Cytidylate kinase; ross 95.8 0.0055 1.9E-07 43.9 3.1 23 10-32 3-25 (219)
484 1fnn_A CDC6P, cell division co 95.8 0.0055 1.9E-07 47.7 3.3 21 12-32 46-66 (389)
485 4fcw_A Chaperone protein CLPB; 95.8 0.0085 2.9E-07 45.3 4.3 22 11-32 48-69 (311)
486 1ofh_A ATP-dependent HSL prote 95.8 0.0059 2E-07 46.0 3.2 23 10-32 50-72 (310)
487 4b4t_J 26S protease regulatory 95.8 0.0064 2.2E-07 48.0 3.4 24 9-32 181-204 (405)
488 3ld9_A DTMP kinase, thymidylat 95.8 0.0073 2.5E-07 43.8 3.5 26 6-31 17-42 (223)
489 2iw3_A Elongation factor 3A; a 95.7 0.0029 9.9E-08 55.3 1.5 22 12-33 701-722 (986)
490 3tqf_A HPR(Ser) kinase; transf 95.7 0.0075 2.6E-07 41.8 3.2 24 11-34 17-40 (181)
491 3exa_A TRNA delta(2)-isopenten 95.7 0.0067 2.3E-07 46.2 3.2 22 11-32 4-25 (322)
492 3a8t_A Adenylate isopentenyltr 95.7 0.0067 2.3E-07 46.7 3.2 22 11-32 41-62 (339)
493 3cr8_A Sulfate adenylyltranfer 95.7 0.0043 1.5E-07 51.1 2.1 24 9-32 368-391 (552)
494 4edh_A DTMP kinase, thymidylat 95.6 0.0083 2.9E-07 43.1 3.4 23 9-31 5-27 (213)
495 1e69_A Chromosome segregation 95.6 0.0046 1.6E-07 47.4 2.0 21 12-32 26-46 (322)
496 1w1w_A Structural maintenance 95.6 0.0072 2.5E-07 48.1 3.3 21 12-32 28-48 (430)
497 4f4c_A Multidrug resistance pr 95.6 0.0033 1.1E-07 57.1 1.3 21 12-32 1107-1127(1321)
498 2r62_A Cell division protease 95.6 0.0033 1.1E-07 46.5 1.2 22 11-32 45-66 (268)
499 1sxj_D Activator 1 41 kDa subu 95.6 0.0077 2.6E-07 46.3 3.3 21 12-32 60-80 (353)
500 2qgz_A Helicase loader, putati 95.6 0.0085 2.9E-07 45.6 3.4 23 10-32 152-174 (308)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.3e-43 Score=260.02 Aligned_cols=172 Identities=42% Similarity=0.740 Sum_probs=147.0
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
+++.+++||+|+|.+|+|||||+++|+.+.+...+.++.|.++.......++..+.+++|||+|++++..++..++++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
++++|||++++++|+.+..|+..+.....+++|+++|+||+|+.+.+.+..+++..+++.++++|++|||++|.||+++|
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence 99999999999999999999999988777889999999999999888999999999999999999999999999999999
Q ss_pred HHHHHhccccCC
Q 029029 165 YEIAKRLPRVQP 176 (200)
Q Consensus 165 ~~l~~~~~~~~~ 176 (200)
+.|++.+.....
T Consensus 168 ~~i~~~i~~~~~ 179 (216)
T 4dkx_A 168 RRVAAALPGMES 179 (216)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHhhhc
Confidence 999999876543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=9.6e-37 Score=222.21 Aligned_cols=170 Identities=41% Similarity=0.680 Sum_probs=156.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.....+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 34668999999999999999999999988887788888888888888889989999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999988777888889999999999999999999999999999
Q ss_pred HHHHhccccC
Q 029029 166 EIAKRLPRVQ 175 (200)
Q Consensus 166 ~l~~~~~~~~ 175 (200)
+|.+.+.+..
T Consensus 164 ~l~~~i~~~~ 173 (206)
T 2bcg_Y 164 TMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 3
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.9e-35 Score=210.80 Aligned_cols=176 Identities=93% Similarity=1.318 Sum_probs=154.1
Q ss_pred CCCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q 029029 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80 (200)
Q Consensus 1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 80 (200)
|+......+.+||+|+|++|+|||||+++|+++.+.....++.+.++......+++..+.+.+||+||++.+...+..++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 55666778899999999999999999999999888877778888888888888888899999999999999999999999
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
..+|++|+|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|.|+
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999999999999999999998876678999999999999877778888999999999999999999999999
Q ss_pred HHHHHHHHHhccccCC
Q 029029 161 NDIFYEIAKRLPRVQP 176 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~~ 176 (200)
+++|++|.+.+....+
T Consensus 163 ~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 163 KEIFYEIARRLPRVQP 178 (181)
T ss_dssp HHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999998876543
No 4
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.3e-36 Score=220.07 Aligned_cols=193 Identities=36% Similarity=0.638 Sum_probs=150.5
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 35678999999999999999999999988887788888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCCCCH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTATNV 160 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 160 (200)
+|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+....+++..++. ..+++++++||++|.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988776532 478999999999997 45567778888887 67889999999999999
Q ss_pred HHHHHHHHHhccccCCCC-----CCCCceeccCCCCC-CCCCCCCC
Q 029029 161 NDIFYEIAKRLPRVQPAP-----NPSGMVLMDRPGER-TASASCCS 200 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~c~~ 200 (200)
+++|++|.+.+.++.... .+..+. .+.+++. .++++|||
T Consensus 163 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEVELYNEFPEPIK-LDKNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCC------------------
T ss_pred HHHHHHHHHHHHHhccccccccCCCcccc-CCcccccccCCCCCCC
Confidence 999999999987754321 133333 3332333 67778877
No 5
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=7.5e-35 Score=205.38 Aligned_cols=168 Identities=71% Similarity=1.081 Sum_probs=154.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
++.+.+||+++|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 45678999999999999999999999988887778888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+++|+|++++.++..+..|+..+.....++.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998887667899999999999987777888889999999999999999999999999999
Q ss_pred HHHHhccc
Q 029029 166 EIAKRLPR 173 (200)
Q Consensus 166 ~l~~~~~~ 173 (200)
+|.+.+.+
T Consensus 162 ~i~~~~~~ 169 (170)
T 1r2q_A 162 AIAKKLPK 169 (170)
T ss_dssp HHHHTSCC
T ss_pred HHHHHHhh
Confidence 99998754
No 6
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=214.45 Aligned_cols=193 Identities=28% Similarity=0.489 Sum_probs=150.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....++|+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 45679999999999999999999998887777777766554 45566788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888764 35899999999999987777888899999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCC-CceeccCCCCCCCCCCCCC
Q 029029 166 EIAKRLPRVQPAPNPS-GMVLMDRPGERTASASCCS 200 (200)
Q Consensus 166 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~ 200 (200)
+|.+.+.++.....+. ......++.....+++||.
T Consensus 170 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Cc~ 205 (206)
T 2bov_A 170 DLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCCI 205 (206)
T ss_dssp HHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHccccccccccCcccccchhhccccceec
Confidence 9999987753222211 1112333445555667763
No 7
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.5e-34 Score=202.86 Aligned_cols=168 Identities=50% Similarity=0.841 Sum_probs=154.8
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+|+|++|+|||||+++|+++.+.....++.+.++........+....+.+|||||.+.+...+..++..+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 34678999999999999999999999998888888888888888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+++|+|++++.++..+..|+..+.....+..|+++|+||+|+.+.+++..++...+++..+++++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887778899999999999987777888889999999999999999999999999999
Q ss_pred HHHHhccc
Q 029029 166 EIAKRLPR 173 (200)
Q Consensus 166 ~l~~~~~~ 173 (200)
+|.+.+.+
T Consensus 162 ~i~~~i~~ 169 (170)
T 1z0j_A 162 EISRRIPS 169 (170)
T ss_dssp HHHHHCCC
T ss_pred HHHHHHhc
Confidence 99998753
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.8e-35 Score=211.30 Aligned_cols=170 Identities=39% Similarity=0.706 Sum_probs=155.8
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+++|||||++.+...+..++..+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 34567999999999999999999999988887788888888888888889989999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987777888889999999999999999999999999999
Q ss_pred HHHHhccccC
Q 029029 166 EIAKRLPRVQ 175 (200)
Q Consensus 166 ~l~~~~~~~~ 175 (200)
+|.+.+.+..
T Consensus 182 ~l~~~i~~~~ 191 (201)
T 2ew1_A 182 DLACRLISEA 191 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=207.15 Aligned_cols=173 Identities=41% Similarity=0.671 Sum_probs=158.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35679999999999999999999999888888888888888888888999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998887778999999999999888888889999999999999999999999999999999
Q ss_pred HHHhccccCCCCC
Q 029029 167 IAKRLPRVQPAPN 179 (200)
Q Consensus 167 l~~~~~~~~~~~~ 179 (200)
|.+.+.+..+...
T Consensus 173 l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 173 MAAEIKKRMGPGA 185 (196)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHhcccc
Confidence 9999988766443
No 10
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-35 Score=211.62 Aligned_cols=176 Identities=32% Similarity=0.429 Sum_probs=147.0
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 83 (200)
|+.....++|+|+|++|+|||||+++|+++.+...+.++.+.++ ......++..+.+.+|||||++.+...+..++..+
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 80 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence 45566789999999999999999999998887766666665444 34556788889999999999999998999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029 84 AAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161 (200)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (200)
|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +....++...++..++++++++||++|.|++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence 99999999999999998888887776643 24789999999999975 5567788888999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCC
Q 029029 162 DIFYEIAKRLPRVQPAPNPS 181 (200)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~ 181 (200)
++|++|.+.+..+.....+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~~ 179 (199)
T 2gf0_A 160 ELFQELLTLETRRNMSLNID 179 (199)
T ss_dssp HHHHHHHHHCSSSCEECC--
T ss_pred HHHHHHHHHHhhhhcccccc
Confidence 99999999988776544443
No 11
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.4e-34 Score=204.53 Aligned_cols=168 Identities=44% Similarity=0.755 Sum_probs=153.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+|||||++.+...+..++..+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 44668999999999999999999999988887778888888888888888899999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987777888899999999999999999999999999999
Q ss_pred HHHHhccc
Q 029029 166 EIAKRLPR 173 (200)
Q Consensus 166 ~l~~~~~~ 173 (200)
+|.+.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99998754
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=211.23 Aligned_cols=171 Identities=41% Similarity=0.662 Sum_probs=147.5
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 34567999999999999999999999888877777888877878888888888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIF 164 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~ 164 (200)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++ +++++||++|.|++++|
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887667899999999999987777888899999999999 99999999999999999
Q ss_pred HHHHHhccccCC
Q 029029 165 YEIAKRLPRVQP 176 (200)
Q Consensus 165 ~~l~~~~~~~~~ 176 (200)
++|.+.+.+...
T Consensus 185 ~~l~~~i~~~~~ 196 (201)
T 2hup_A 185 LRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 999999887654
No 13
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-34 Score=202.03 Aligned_cols=165 Identities=56% Similarity=0.920 Sum_probs=150.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+.+||+++|++|+|||||+++|+++.+.....++.+.++......+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 47899999999999999999999988887788888888888888888999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC---CCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA---RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+. +.+..++...+++..+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998876678999999999999765 56778888999999999999999999999999999
Q ss_pred HHHHhccc
Q 029029 166 EIAKRLPR 173 (200)
Q Consensus 166 ~l~~~~~~ 173 (200)
+|.+.+.+
T Consensus 162 ~l~~~i~~ 169 (170)
T 1ek0_A 162 GIGEKIPL 169 (170)
T ss_dssp HHHTTSCC
T ss_pred HHHHHHhh
Confidence 99987753
No 14
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.5e-34 Score=207.10 Aligned_cols=170 Identities=42% Similarity=0.740 Sum_probs=151.5
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+++|||||++.+...+..++..+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34467899999999999999999999998887777778888888888888888999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988766789999999999998777788888999999999999999999999999999
Q ss_pred HHHHHhcccc
Q 029029 165 YEIAKRLPRV 174 (200)
Q Consensus 165 ~~l~~~~~~~ 174 (200)
++|.+.+.++
T Consensus 176 ~~l~~~i~~~ 185 (191)
T 2a5j_A 176 INTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 15
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=212.71 Aligned_cols=169 Identities=43% Similarity=0.733 Sum_probs=146.2
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999888777778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||+++.|++++|++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877778888899999999999999999999999999999
Q ss_pred HHHhccccC
Q 029029 167 IAKRLPRVQ 175 (200)
Q Consensus 167 l~~~~~~~~ 175 (200)
|.+.+.+..
T Consensus 170 l~~~i~~~~ 178 (223)
T 3cpj_B 170 LINTIYQKV 178 (223)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHh
Confidence 999887653
No 16
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-34 Score=208.00 Aligned_cols=169 Identities=52% Similarity=0.841 Sum_probs=153.4
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++....+.+|||||++.+...+..++..+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 36689999999999999999999999888777888888888888888888899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|++++|++
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998876678999999999999876778888999999999999999999999999999999
Q ss_pred HHHhccccC
Q 029029 167 IAKRLPRVQ 175 (200)
Q Consensus 167 l~~~~~~~~ 175 (200)
|.+.+.+..
T Consensus 180 l~~~i~~~~ 188 (192)
T 2fg5_A 180 ISRQIPPLD 188 (192)
T ss_dssp HHHTCC---
T ss_pred HHHHHHhhC
Confidence 999886543
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.1e-34 Score=204.70 Aligned_cols=168 Identities=40% Similarity=0.743 Sum_probs=145.0
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 34678999999999999999999999988877777888888877788888889999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999888776556789999999999987777888899999999999999999999999999999
Q ss_pred HHHHhccc
Q 029029 166 EIAKRLPR 173 (200)
Q Consensus 166 ~l~~~~~~ 173 (200)
+|.+.+.+
T Consensus 162 ~l~~~~~~ 169 (170)
T 1z08_A 162 DLCKRMIE 169 (170)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988754
No 18
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=4.7e-34 Score=205.30 Aligned_cols=168 Identities=36% Similarity=0.628 Sum_probs=153.7
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 35679999999999999999999999888777778888888888888888899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877778888899999999999999999999999999999
Q ss_pred HHHhcccc
Q 029029 167 IAKRLPRV 174 (200)
Q Consensus 167 l~~~~~~~ 174 (200)
|.+.+.+.
T Consensus 179 l~~~i~~~ 186 (189)
T 2gf9_A 179 LVDVICEK 186 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 19
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=3.2e-34 Score=203.87 Aligned_cols=170 Identities=42% Similarity=0.746 Sum_probs=151.9
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
.+..+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+|||||++.+...+..++..+|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 34456799999999999999999999988888777888888888888888998999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887655789999999999998777788888999999999999999999999999999
Q ss_pred HHHHHhcccc
Q 029029 165 YEIAKRLPRV 174 (200)
Q Consensus 165 ~~l~~~~~~~ 174 (200)
++|.+.+...
T Consensus 169 ~~l~~~~~~~ 178 (179)
T 2y8e_A 169 RRVAAALPGM 178 (179)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHHhhc
Confidence 9999987653
No 20
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=9.8e-35 Score=207.63 Aligned_cols=169 Identities=37% Similarity=0.687 Sum_probs=125.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+|+|++|+|||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35689999999999999999999998877767777888777777888888899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877778888999999999999999999999999999999
Q ss_pred HHHhccccC
Q 029029 167 IAKRLPRVQ 175 (200)
Q Consensus 167 l~~~~~~~~ 175 (200)
|.+.+.+..
T Consensus 165 l~~~i~~~~ 173 (183)
T 2fu5_C 165 LARDIKAKM 173 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887653
No 21
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.9e-34 Score=202.52 Aligned_cols=172 Identities=41% Similarity=0.681 Sum_probs=145.5
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 82 (200)
.....+.+||+|+|++|+|||||+++|+++.+. ..+.++.+.++.......++..+.+++||+||++.+...+..++..
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 345577899999999999999999999988774 3566777778777777888989999999999999999999999999
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 162 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (200)
+|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++.++++++++||+++.|+++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999998887667899999999999988777888889999999999999999999999999
Q ss_pred HHHHHHHhccccC
Q 029029 163 IFYEIAKRLPRVQ 175 (200)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (200)
+|++|.+.+.+..
T Consensus 164 l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 164 AFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 22
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=5.5e-34 Score=204.16 Aligned_cols=169 Identities=40% Similarity=0.676 Sum_probs=154.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45689999999999999999999999888877778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999877778888899999999999999999999999999999
Q ss_pred HHHhccccC
Q 029029 167 IAKRLPRVQ 175 (200)
Q Consensus 167 l~~~~~~~~ 175 (200)
+.+.+.++.
T Consensus 167 l~~~~~~~~ 175 (186)
T 2bme_A 167 CARKILNKI 175 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887654
No 23
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.1e-34 Score=202.42 Aligned_cols=173 Identities=28% Similarity=0.489 Sum_probs=151.7
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.....+||+|+|++|+|||||+++|+++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3456899999999999999999999998887777777766654 566778888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
+++|+|++++.++..+..|+..+.. ....+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999999988844 345688999999999998777788888999999999999999999999999999
Q ss_pred HHHHHhccccCCCCC
Q 029029 165 YEIAKRLPRVQPAPN 179 (200)
Q Consensus 165 ~~l~~~~~~~~~~~~ 179 (200)
++|.+.+.+......
T Consensus 164 ~~l~~~~~~~~~~~~ 178 (181)
T 2fn4_A 164 EQLVRAVRKYQEQEL 178 (181)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhhccCC
Confidence 999999987665443
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=6.2e-34 Score=203.10 Aligned_cols=170 Identities=32% Similarity=0.463 Sum_probs=150.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++ ......++..+.+++||+||++.+...+..++..+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 45689999999999999999999998888888888887776 66777888899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999998886653 35789999999999988888899999999999999999999999999999999
Q ss_pred HHHHhccccCCC
Q 029029 166 EIAKRLPRVQPA 177 (200)
Q Consensus 166 ~l~~~~~~~~~~ 177 (200)
+|.+.+....+.
T Consensus 162 ~l~~~~~~~~~~ 173 (181)
T 3t5g_A 162 RIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHhcCC
Confidence 999999887653
No 25
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=204.56 Aligned_cols=169 Identities=40% Similarity=0.715 Sum_probs=154.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+..+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++....+.+|||||++.+...+..++..+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 44668999999999999999999999988877777888888888888888899999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877667899999999999987777888889999999999999999999999999999
Q ss_pred HHHHhcccc
Q 029029 166 EIAKRLPRV 174 (200)
Q Consensus 166 ~l~~~~~~~ 174 (200)
+|.+.+.+.
T Consensus 181 ~l~~~i~~~ 189 (193)
T 2oil_A 181 TVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 26
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=205.42 Aligned_cols=169 Identities=34% Similarity=0.593 Sum_probs=154.2
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+....+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34568999999999999999999999888877777888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999988777888899999999999999999999999999999
Q ss_pred HHHHhcccc
Q 029029 166 EIAKRLPRV 174 (200)
Q Consensus 166 ~l~~~~~~~ 174 (200)
+|.+.+.+.
T Consensus 164 ~l~~~i~~~ 172 (203)
T 1zbd_A 164 RLVDVICEK 172 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888664
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.4e-33 Score=201.65 Aligned_cols=168 Identities=30% Similarity=0.511 Sum_probs=150.9
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456789999999999999999999998888877777777666 667778888999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCC-CCCCHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK-TATNVND 162 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~ 162 (200)
++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..+++.++++++++||+ ++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 999999999999999999999888663 44688999999999998888899999999999999999999999 9999999
Q ss_pred HHHHHHHhccc
Q 029029 163 IFYEIAKRLPR 173 (200)
Q Consensus 163 ~~~~l~~~~~~ 173 (200)
+|++|.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=6.5e-34 Score=200.33 Aligned_cols=165 Identities=36% Similarity=0.631 Sum_probs=150.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|++|+|||||+++|+++.+...+.++.+.++.......++....+.+||+||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999998888777888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999998887764 678999999999998777788888999999999999999999999999999999
Q ss_pred HHhccc
Q 029029 168 AKRLPR 173 (200)
Q Consensus 168 ~~~~~~ 173 (200)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988754
No 29
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=5.1e-34 Score=202.84 Aligned_cols=170 Identities=32% Similarity=0.483 Sum_probs=148.7
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
...+.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++ ....+++|||||++.+...+..++.++|
T Consensus 2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 456789999999999999999999998887766677777777777887776 6789999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCe-EEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGN--PNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (200)
++|+|+|++++.+++.+..|+..+..... ...| +++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 99999999999999999999888876421 2344 89999999998777788888999999999999999999999999
Q ss_pred HHHHHHHHhccccC
Q 029029 162 DIFYEIAKRLPRVQ 175 (200)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (200)
++|++|.+.+.+..
T Consensus 162 ~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 162 LCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999886654
No 30
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=8.1e-34 Score=200.18 Aligned_cols=165 Identities=42% Similarity=0.746 Sum_probs=144.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
..+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999988877777888877877788888888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....++...+++.++++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998876678999999999999 4456778888999999999999999999999999999999
Q ss_pred Hhcccc
Q 029029 169 KRLPRV 174 (200)
Q Consensus 169 ~~~~~~ 174 (200)
+.+.++
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988764
No 31
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-35 Score=210.73 Aligned_cols=170 Identities=34% Similarity=0.587 Sum_probs=156.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 45689999999999999999999998888777778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999887888899999999999999999999999999999999
Q ss_pred HHHhccccCC
Q 029029 167 IAKRLPRVQP 176 (200)
Q Consensus 167 l~~~~~~~~~ 176 (200)
|.+.+.+..+
T Consensus 180 l~~~i~~~~~ 189 (191)
T 3dz8_A 180 LVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcc
Confidence 9998876644
No 32
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=200.58 Aligned_cols=170 Identities=38% Similarity=0.654 Sum_probs=152.2
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.....+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 34568999999999999999999999888877778888888888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
+|+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999987763 5799999999999988778888899999999999999999999999999999
Q ss_pred HHHHhccccCC
Q 029029 166 EIAKRLPRVQP 176 (200)
Q Consensus 166 ~l~~~~~~~~~ 176 (200)
+|.+.+.+...
T Consensus 164 ~l~~~~~~~~~ 174 (181)
T 3tw8_B 164 CITELVLRAKK 174 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99998876543
No 33
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=207.05 Aligned_cols=169 Identities=33% Similarity=0.577 Sum_probs=139.6
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+.+||+|+|++|+|||||+++|+++.+.....++.+.++......+++....+.+|||||++.+...+..++..+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34466899999999999999999999998887777788888888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc------CCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL------DARKVTAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
++|+|+|++++.++..+..|+..+......+.|+++|+||+|+. ..+.+..++...+++..+++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999999999888766789999999999996 345677888899999999999999999999
Q ss_pred CHHHHHHHHHHhccc
Q 029029 159 NVNDIFYEIAKRLPR 173 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~ 173 (200)
|++++|++|.+.+.+
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998764
No 34
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=206.54 Aligned_cols=169 Identities=41% Similarity=0.695 Sum_probs=144.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 46689999999999999999999998887777778888788888888888889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999877778888899999999999999999999999999999
Q ss_pred HHHhccccC
Q 029029 167 IAKRLPRVQ 175 (200)
Q Consensus 167 l~~~~~~~~ 175 (200)
|.+.+..+.
T Consensus 182 l~~~i~~~~ 190 (200)
T 2o52_A 182 CARTILNKI 190 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 35
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.2e-33 Score=199.36 Aligned_cols=169 Identities=37% Similarity=0.621 Sum_probs=147.4
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|
T Consensus 2 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T 1wms_A 2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 81 (177)
T ss_dssp CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred CCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence 45677899999999999999999999998887777888888888888888998999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCCCC
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTATN 159 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 159 (200)
++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+....+++..+++ ..+++++++||++|.|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 99999999999999999999988876533 678999999999997 45677888888887 5678999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 029029 160 VNDIFYEIAKRLPRV 174 (200)
Q Consensus 160 i~~~~~~l~~~~~~~ 174 (200)
++++|+++.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988653
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=205.56 Aligned_cols=168 Identities=34% Similarity=0.654 Sum_probs=145.6
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.....+||+|+|.+|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34668999999999999999999999888777777888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~ 164 (200)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++.. +++++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999988876678999999999999877778888888888874 7899999999999999999
Q ss_pred HHHHHhccc
Q 029029 165 YEIAKRLPR 173 (200)
Q Consensus 165 ~~l~~~~~~ 173 (200)
++|.+.+.+
T Consensus 182 ~~l~~~i~~ 190 (192)
T 2il1_A 182 LKLVDDILK 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.5e-33 Score=202.66 Aligned_cols=168 Identities=36% Similarity=0.638 Sum_probs=147.5
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAA 84 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d 84 (200)
...+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+.+|||||++.+. ..+..++..+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34568999999999999999999999988887788888888888888888889999999999999888 88888999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC---CCH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA---TNV 160 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i 160 (200)
++|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.+++.++++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999999887764 468999999999999877778888899999999999999999999 999
Q ss_pred HHHHHHHHHhccc
Q 029029 161 NDIFYEIAKRLPR 173 (200)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (200)
+++|++|.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 38
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.5e-33 Score=200.94 Aligned_cols=171 Identities=27% Similarity=0.479 Sum_probs=148.9
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+.+||+|+|++|+|||||+++|+++.+...+.++.+..+. .....++..+.+++|||||++.+...+..++.++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 34567899999999999999999999999887777777776654 45667888999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC--CCCCHHHHHHHHHHcCCc-EEEecCCCCCCH
Q 029029 85 AAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA--RKVTAEEAQAYAQENGLF-FMETSAKTATNV 160 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 160 (200)
++|+|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+.+. +.+..+++..+++.+++. ++++||++|.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999997 7788888765 467999999999999753 567888999999999998 999999999999
Q ss_pred HHHHHHHHHhccccCCC
Q 029029 161 NDIFYEIAKRLPRVQPA 177 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~~~ 177 (200)
+++|++|.+.+....+.
T Consensus 176 ~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 176 NEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp HHHHHHHHHHHHCSCC-
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999998877653
No 39
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=202.77 Aligned_cols=167 Identities=28% Similarity=0.434 Sum_probs=142.4
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
.+..+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+++|||+|++.+... ..++..+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 4456789999999999999999999999888877778877655 455677888999999999999988775 67889999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC-CCCCCH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA-KTATNV 160 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i 160 (200)
++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++|| ++|.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 9999999999999999999998887753 257899999999999877788889999999999999999999 899999
Q ss_pred HHHHHHHHHhccc
Q 029029 161 NDIFYEIAKRLPR 173 (200)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (200)
+++|++|++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 40
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=204.78 Aligned_cols=171 Identities=25% Similarity=0.305 Sum_probs=144.1
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAA 84 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d 84 (200)
.....+||+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..++..+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345689999999999999999999975443333445556666677778889999999999999987664 6777889999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI 163 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (200)
++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998877543 57999999999999877778888899999999999999999999999999
Q ss_pred HHHHHHhccccCC
Q 029029 164 FYEIAKRLPRVQP 176 (200)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (200)
|+++++.+.....
T Consensus 179 f~~l~~~i~~~~~ 191 (195)
T 3cbq_A 179 FEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999998876544
No 41
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=9.6e-34 Score=207.18 Aligned_cols=172 Identities=30% Similarity=0.508 Sum_probs=144.5
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
+...+.+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 3445789999999999999999999999888777777776554 445667788899999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCC--------CCHHHHHHHHHHcCC-cEEEecC
Q 029029 85 AAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK--------VTAEEAQAYAQENGL-FFMETSA 154 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa 154 (200)
++|+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++||
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999986 8998887763 5799999999999976543 367888889988886 8999999
Q ss_pred CCCCCHHHHHHHHHHhccccCCCC
Q 029029 155 KTATNVNDIFYEIAKRLPRVQPAP 178 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~~~~~~ 178 (200)
++|.|++++|++|.+.+.......
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC----
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999988765443
No 42
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.8e-33 Score=202.47 Aligned_cols=170 Identities=31% Similarity=0.571 Sum_probs=150.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF-SQTLAVNDA---------TVKFEIWDTAGQERYHSL 75 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~ 75 (200)
...+.+||+|+|++|+|||||+++|+++.+.....++.+.++. ......++. ...+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999998887777788877776 555555655 789999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
+..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999887654 68999999999999877778888899999999999999999
Q ss_pred CCCCCHHHHHHHHHHhccccC
Q 029029 155 KTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+++.|++++|++|.+.+.++.
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=198.57 Aligned_cols=168 Identities=31% Similarity=0.411 Sum_probs=137.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--cccchhhhhcCCcE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPMYYRGAAA 85 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 85 (200)
.+.+||+|+|++|+|||||+++|.++.+.. ..++.+.+.....+.+++..+.+.+||+||++. +......++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 457999999999999999999999766543 345677777778888889899999999999987 55666778899999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887753 3578999999999998777788888889999999999999999999999999
Q ss_pred HHHHHhccccCC
Q 029029 165 YEIAKRLPRVQP 176 (200)
Q Consensus 165 ~~l~~~~~~~~~ 176 (200)
++|.+.+...+.
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999998876543
No 44
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.2e-33 Score=201.29 Aligned_cols=168 Identities=32% Similarity=0.562 Sum_probs=144.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
..++||+|+|++|+|||||+++|+++.+...+.++.+ +........++..+.+.+|||||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4689999999999999999999998887766666653 444566677888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ +....+.+..++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887743 46899999999999974 556788899999999999999999999999999999
Q ss_pred HHHhccccCCC
Q 029029 167 IAKRLPRVQPA 177 (200)
Q Consensus 167 l~~~~~~~~~~ 177 (200)
|.+.+......
T Consensus 160 l~~~~~~~~~~ 170 (189)
T 4dsu_A 160 LVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99999876543
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.3e-33 Score=197.85 Aligned_cols=165 Identities=25% Similarity=0.315 Sum_probs=133.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCcEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAAAAII 88 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 88 (200)
.+||+++|++|+|||||+++|.+........++.+.+.....+..++..+.+.+||+||++.+.. .+..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999997666655556666777778888899999999999999988765 67777899999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877643 489999999999998778889999999999999999999999999999999999
Q ss_pred HHhcccc
Q 029029 168 AKRLPRV 174 (200)
Q Consensus 168 ~~~~~~~ 174 (200)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9987654
No 46
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.1e-33 Score=205.90 Aligned_cols=171 Identities=26% Similarity=0.442 Sum_probs=145.4
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
.....+||+|+|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..++..+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345689999999999999999999999988887788887665 4556677788999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEE
Q 029029 86 AIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFME 151 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 151 (200)
+|+|||+++++++.. +..|+..+.... ++.|+++|+||+|+.+. +.+..+++..+++.+++ ++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 689999988874 68999999999999753 56888999999999999 9999
Q ss_pred ecCCCCCC-HHHHHHHHHHhccccCCCC
Q 029029 152 TSAKTATN-VNDIFYEIAKRLPRVQPAP 178 (200)
Q Consensus 152 ~Sa~~~~~-i~~~~~~l~~~~~~~~~~~ 178 (200)
+||++|.| ++++|+++.+.+.......
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred eccCCCcccHHHHHHHHHHHHhccCcCC
Confidence 99999998 9999999999987765533
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=5.5e-33 Score=195.32 Aligned_cols=164 Identities=32% Similarity=0.558 Sum_probs=142.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+.+||+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 579999999999999999999998887766666665544 3455678888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877543 589999999999998777788889999999999999999999999999999999
Q ss_pred HHhccc
Q 029029 168 AKRLPR 173 (200)
Q Consensus 168 ~~~~~~ 173 (200)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998754
No 48
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.8e-33 Score=199.17 Aligned_cols=168 Identities=38% Similarity=0.669 Sum_probs=151.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999998888778888888888888888999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+. .+.+..++...+++.++++++++||+++.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999998887653 3578999999999994 3557788889999999999999999999999999999
Q ss_pred HHHhccccCC
Q 029029 167 IAKRLPRVQP 176 (200)
Q Consensus 167 l~~~~~~~~~ 176 (200)
|.+.+.....
T Consensus 172 l~~~~~~~~~ 181 (195)
T 1x3s_A 172 LVEKIIQTPG 181 (195)
T ss_dssp HHHHHHTSGG
T ss_pred HHHHHHhhhh
Confidence 9999876543
No 49
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=5.7e-33 Score=195.30 Aligned_cols=163 Identities=34% Similarity=0.581 Sum_probs=143.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+++||+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 478999999999999999999999888777777776554 3556667788999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..+++.+ +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 99999999999999998887764 3468999999999999877778888899998887 789999999999999999999
Q ss_pred HHHhcc
Q 029029 167 IAKRLP 172 (200)
Q Consensus 167 l~~~~~ 172 (200)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 50
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=8.8e-33 Score=198.08 Aligned_cols=164 Identities=20% Similarity=0.382 Sum_probs=142.4
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
+.+.+.+||+|+|++|+|||||+++|+++.+...+.++.+ .+...+.+++..+.+++|||+|++.+. ++..+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 4557799999999999999999999999888776666632 345777888999999999999998766 778899
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCcc--CCCCCCHHHHHHHHHHcC-CcEEEecCCCCCCH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLL--DARKVTAEEAQAYAQENG-LFFMETSAKTATNV 160 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 160 (200)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..+++.++ ++++++||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987643 678999999999994 456788889999999987 89999999999999
Q ss_pred HHHHHHHHHhccccC
Q 029029 161 NDIFYEIAKRLPRVQ 175 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~ 175 (200)
+++|++|.+.+...+
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 51
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-32 Score=198.59 Aligned_cols=165 Identities=48% Similarity=0.811 Sum_probs=145.6
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeE----------------------------
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT---------------------------- 58 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 58 (200)
..+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4568999999999999999999999998887777888877777777666554
Q ss_pred ---------EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 59 ---------VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 59 ---------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
..+.+|||||++.+...+..++..+|++|+|+|++++.++..+..|+..+.... +.|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence 899999999999999999999999999999999999999999999999988763 389999999999 55
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
.+....+++..+++.++++++++||++|.|++++|++|.+.+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 567788899999999999999999999999999999999987654
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=5.4e-33 Score=195.43 Aligned_cols=163 Identities=27% Similarity=0.378 Sum_probs=123.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 89 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 89 (200)
.+||+++|++|+|||||+++|.+... ....++.+.++ .....+++..+.+.+||++|++.+...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999985443 33445555555 45667789999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029 90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999887753 46899999999999988888899999999999999999999999999999999999
Q ss_pred Hhcccc
Q 029029 169 KRLPRV 174 (200)
Q Consensus 169 ~~~~~~ 174 (200)
+.+...
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987654
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=203.97 Aligned_cols=170 Identities=31% Similarity=0.464 Sum_probs=144.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++..+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 35689999999999999999999999888877777776665 55566667788999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (200)
|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+...+...+++..+++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999887653 35789999999999988888899999999999999999999999999999999
Q ss_pred HHHHhccccCCC
Q 029029 166 EIAKRLPRVQPA 177 (200)
Q Consensus 166 ~l~~~~~~~~~~ 177 (200)
+|.+.+.+....
T Consensus 180 ~l~~~i~~~~~~ 191 (201)
T 3oes_A 180 KVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhh
Confidence 999998876543
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.9e-33 Score=194.63 Aligned_cols=164 Identities=37% Similarity=0.567 Sum_probs=145.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+++||+++|++|+|||||+++|+++.+.....++.+.. .......++....+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888877666666543 36667778888999999999999999899999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...+++..+++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988887653 3689999999999998777788888999999999999999999999999999999
Q ss_pred HHhccc
Q 029029 168 AKRLPR 173 (200)
Q Consensus 168 ~~~~~~ 173 (200)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987753
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-32 Score=200.23 Aligned_cols=166 Identities=41% Similarity=0.742 Sum_probs=149.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...++|+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988887777788888888888888888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....++...++..++++++++||+++.|++++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999988876668999999999999 445677888889999999999999999999999999999
Q ss_pred HHhcccc
Q 029029 168 AKRLPRV 174 (200)
Q Consensus 168 ~~~~~~~ 174 (200)
.+.+.+.
T Consensus 177 ~~~~~~~ 183 (213)
T 3cph_A 177 AKLIQEK 183 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.3e-32 Score=196.90 Aligned_cols=169 Identities=31% Similarity=0.539 Sum_probs=146.5
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3446689999999999999999999998887766666665444 445667888899999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI 163 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (200)
++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 99999999999999999999988877543 57999999999999877778888999999999999999999999999999
Q ss_pred HHHHHHhcccc
Q 029029 164 FYEIAKRLPRV 174 (200)
Q Consensus 164 ~~~l~~~~~~~ 174 (200)
|++|.+.+.+.
T Consensus 172 ~~~l~~~i~~~ 182 (187)
T 2a9k_A 172 FFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 57
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=4.1e-33 Score=198.66 Aligned_cols=170 Identities=38% Similarity=0.644 Sum_probs=134.3
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
+..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+..+ +....+.+||+||++.+...+..++..+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34668999999999999999999999988877777888877777777776 56789999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCcCccC-CCCCCHHHHHHHHH-HcCCcEEEecCCCCC
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLD-ARKVTAEEAQAYAQ-ENGLFFMETSAKTAT 158 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 158 (200)
++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..+++ ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988876532 6789999999999953 34567788888887 567899999999999
Q ss_pred CHHHHHHHHHHhccccC
Q 029029 159 NVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~~~ 175 (200)
|++++|++|.+.+.+++
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 58
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=199.36 Aligned_cols=168 Identities=36% Similarity=0.525 Sum_probs=146.6
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45689999999999999999999999888777777776544 45567788899999999999988 77788889999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIF 164 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~ 164 (200)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999998887743 3689999999999998777788889999999999999999999999 999999
Q ss_pred HHHHHhccccCC
Q 029029 165 YEIAKRLPRVQP 176 (200)
Q Consensus 165 ~~l~~~~~~~~~ 176 (200)
++|.+.+.+..+
T Consensus 183 ~~l~~~i~~~~~ 194 (196)
T 2atv_A 183 YELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcc
Confidence 999998876543
No 59
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.7e-32 Score=195.10 Aligned_cols=162 Identities=26% Similarity=0.403 Sum_probs=136.8
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+++|++|+|||||+++|.++.+.. +.++.+..+ ...+.+++..+.+++|||+|++. ..+++++|+
T Consensus 3 ~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 34678999999999999999999999888765 666666443 56677788899999999999876 467889999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCcCcc--CCCCCCHHHHHHHHHHc-CCcEEEecCCCCCC
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQ---GNPNMVMALAGNKADLL--DARKVTAEEAQAYAQEN-GLFFMETSAKTATN 159 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 159 (200)
+|+|||+++++++..+..|+..+... ...+.|+++|+||+|+. ..+.+..+++..+++.. +++++++||++|.|
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN 155 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence 99999999999999998876665543 23689999999999994 45567888888888876 68999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 029029 160 VNDIFYEIAKRLPRV 174 (200)
Q Consensus 160 i~~~~~~l~~~~~~~ 174 (200)
++++|+++.+.+...
T Consensus 156 i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 156 VDRVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 60
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.4e-33 Score=204.93 Aligned_cols=170 Identities=34% Similarity=0.577 Sum_probs=148.7
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe----------EEEEEEEeCCCccccccc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSL 75 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~ 75 (200)
...+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++. .+.+++|||||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3466899999999999999999999988877666677777766666666655 789999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029 76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
+..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 99999999999999999999999999999887766543 68999999999999877778888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhccccC
Q 029029 155 KTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+++.|++++|++|.+.+.++.
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 61
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=5.9e-33 Score=203.81 Aligned_cols=177 Identities=28% Similarity=0.481 Sum_probs=148.6
Q ss_pred CCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhc
Q 029029 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYR 81 (200)
Q Consensus 3 ~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~ 81 (200)
++......+||+|+|.+|+|||||+++|+++.+...+.++.+.+......... +..+.+.+|||||++.+...+..++.
T Consensus 4 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (218)
T 4djt_A 4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYI 83 (218)
T ss_dssp ------CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred CcccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhh
Confidence 34566778999999999999999999999888777777787777766666554 34489999999999999999999999
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161 (200)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (200)
.+|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+....++...+++++++||++|.|++
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 84 GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 99999999999999999999999999888766678999999999998777788888889988899999999999999999
Q ss_pred HHHHHHHHhccccCCCCC
Q 029029 162 DIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~ 179 (200)
++|++|.+.+........
T Consensus 164 ~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 164 LPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp HHHHHHHHHHHCCTTCCB
T ss_pred HHHHHHHHHHhccccccc
Confidence 999999999987655443
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=5.7e-32 Score=193.43 Aligned_cols=166 Identities=30% Similarity=0.498 Sum_probs=144.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+++|||||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999998888776666665443 455677888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEec
Q 029029 88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETS 153 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (200)
+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+..++...+++..+. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999986 7888887763 48899999999999753 45677888889988887 899999
Q ss_pred CCCCCCHHHHHHHHHHhccccC
Q 029029 154 AKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~ 175 (200)
|++|.|++++|+++.+.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999887554
No 63
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.5e-32 Score=195.16 Aligned_cols=165 Identities=30% Similarity=0.495 Sum_probs=144.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35689999999999999999999999888777777776554 44566677789999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEe
Q 029029 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMET 152 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 152 (200)
|+|||+++++++..+. .|+..+.... ++.|+++|+||+|+.+. +.+..+++..+++.+++ +++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999986 7888888763 57899999999999753 35778889999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHHhccc
Q 029029 153 SAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
||++|.|++++|++|.+.+..
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987753
No 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-32 Score=192.27 Aligned_cols=165 Identities=33% Similarity=0.462 Sum_probs=142.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
..+||+++|++|+|||||+++|+++.+...+.++.+.++ ......++....+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999998877666666665444 3445667888999999999999999889999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999998888888777643 257899999999999877778888888999999999999999999999999999
Q ss_pred HHHhcccc
Q 029029 167 IAKRLPRV 174 (200)
Q Consensus 167 l~~~~~~~ 174 (200)
|.+.+..+
T Consensus 161 l~~~~~~~ 168 (172)
T 2erx_A 161 LLNLEKRR 168 (172)
T ss_dssp HHHTCCSS
T ss_pred HHHHHhhh
Confidence 99987654
No 65
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.4e-32 Score=196.72 Aligned_cols=169 Identities=27% Similarity=0.455 Sum_probs=138.2
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 346789999999999999999999998877766666665443 4566778888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEE
Q 029029 86 AIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFME 151 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 151 (200)
+|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+ .+.+..+++..+++.++. ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 7988887763 5899999999999975 245778888999988887 8999
Q ss_pred ecCCCCCCHHHHHHHHHHhccccCC
Q 029029 152 TSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
+||++|.|++++|++|.+.+.+...
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999998876543
No 66
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.8e-33 Score=203.73 Aligned_cols=168 Identities=28% Similarity=0.467 Sum_probs=112.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhC--cccCcccCcceeeEEEEEEEECCe--EEEEEEEeCCCccccccchhhhhcCC
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDA--TVKFEIWDTAGQERYHSLAPMYYRGA 83 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 83 (200)
...+||+|+|++|+|||||+++|+++ .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45789999999999999999999987 666666777776677777777776 89999999999999999999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCcCccC-CCCCCHHHHHHHHHHcCCcEEEecCCC-CC
Q 029029 84 AAAIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLD-ARKVTAEEAQAYAQENGLFFMETSAKT-AT 158 (200)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 158 (200)
|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..+++.++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988755 6899999999999987 677888899999999999999999999 99
Q ss_pred CHHHHHHHHHHhccccC
Q 029029 159 NVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~~~ 175 (200)
|++++|++|.+.+.+..
T Consensus 178 gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNY 194 (208)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999876543
No 67
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=4.3e-32 Score=194.30 Aligned_cols=165 Identities=28% Similarity=0.519 Sum_probs=142.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+|+|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 46689999999999999999999999888777777776555 34566778889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEe
Q 029029 87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMET 152 (200)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 152 (200)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..+++..+++.++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78888887753 57999999999999742 4577888999998887 689999
Q ss_pred cCC-CCCCHHHHHHHHHHhccc
Q 029029 153 SAK-TATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 153 Sa~-~~~~i~~~~~~l~~~~~~ 173 (200)
||+ ++.|++++|+++.+.+..
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999987653
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.4e-31 Score=192.29 Aligned_cols=169 Identities=30% Similarity=0.537 Sum_probs=134.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+..+.+||+++|.+|+|||||+++|+++.+.....++.+..+ ......++..+.+.+||+||++.+...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 346789999999999999999999998877666666554433 4566778888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ +....+++.++++..+++++++||+++.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999998887653 25789999999999876 5567888999999999999999999999999999
Q ss_pred HHHHHhccccCC
Q 029029 165 YEIAKRLPRVQP 176 (200)
Q Consensus 165 ~~l~~~~~~~~~ 176 (200)
++|.+.+.+.+.
T Consensus 175 ~~l~~~~~~~~~ 186 (190)
T 3con_A 175 YTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999998876554
No 69
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-32 Score=198.05 Aligned_cols=170 Identities=28% Similarity=0.396 Sum_probs=139.4
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCC
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGA 83 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~ 83 (200)
.....+||+|+|.+|+|||||+++|++... .....++.|.++....+.+++..+.+.+|||+|.+. +......++..+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 345679999999999999999999995432 122234466677777788899999999999999876 445566678899
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029 84 AAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 162 (200)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (200)
|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988876542 35799999999999987777888888888889999999999999999999
Q ss_pred HHHHHHHhccccC
Q 029029 163 IFYEIAKRLPRVQ 175 (200)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (200)
+|++|++.+....
T Consensus 193 lf~~l~~~i~~~~ 205 (211)
T 2g3y_A 193 LFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886543
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2e-31 Score=193.47 Aligned_cols=165 Identities=32% Similarity=0.530 Sum_probs=143.4
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
+....+||+|+|.+|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+|||||++.+...+..++..+|+
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 3467899999999999999999999998887777777766654 346678888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEE
Q 029029 86 AIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFME 151 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 151 (200)
+|+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+. +.+..++...+++..+. ++++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999999999998 67888877753 57899999999999764 45777888899999888 8999
Q ss_pred ecCCCCCCHHHHHHHHHHhcc
Q 029029 152 TSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
+||++|.|++++|++|.+.+.
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=5.7e-32 Score=198.24 Aligned_cols=168 Identities=32% Similarity=0.530 Sum_probs=124.4
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+...+.++.+.. ......+++..+.+.+|||||++.+...+..++..+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 3567999999999999999999999877766666666443 345567788889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcCC-cEEEe
Q 029029 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENGL-FFMET 152 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 152 (200)
|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..+++..++ +++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999986 7888887753 678999999999997642 5677888999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHHhccccCC
Q 029029 153 SAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
||++|.|++++|++|.+.+.+...
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC--
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999998876543
No 72
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=8.9e-32 Score=195.80 Aligned_cols=167 Identities=29% Similarity=0.483 Sum_probs=138.6
Q ss_pred CCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 029029 3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82 (200)
Q Consensus 3 ~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 82 (200)
......+.+||+++|++|+|||||+++|+++.+...+.++.+ .........++..+.+.+|||||++.+...+..++..
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 101 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc
Confidence 344557789999999999999999999998888776666664 3345566677888999999999999999999999999
Q ss_pred CcEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcCC-c
Q 029029 83 AAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENGL-F 148 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~ 148 (200)
+|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...+++..+. +
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 99999999999999999986 7888888764 689999999999997643 2677888899998887 5
Q ss_pred EEEecCCCCCCHHHHHHHHHHhc
Q 029029 149 FMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
++++||++|.|++++|++|.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999865
No 73
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=209.18 Aligned_cols=168 Identities=42% Similarity=0.699 Sum_probs=142.3
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+.+|||||++.+...+..++..+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35679999999999999999999998877777777888888888888899999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (200)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998776678999999999999877777767788889999999999999999999999999
Q ss_pred HHHhcccc
Q 029029 167 IAKRLPRV 174 (200)
Q Consensus 167 l~~~~~~~ 174 (200)
|.+.+.+.
T Consensus 190 l~~~l~~~ 197 (199)
T 3l0i_B 190 MAAEIKKR 197 (199)
T ss_dssp HTTTTTTT
T ss_pred HHHHHHHh
Confidence 99887654
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3.6e-31 Score=185.56 Aligned_cols=163 Identities=32% Similarity=0.580 Sum_probs=141.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+.+||+++|++|+|||||+++|.++.+.....++.+.. .......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 46899999999999999999999887766666665433 34556678888999999999999999899999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ +....++...+++.++++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887753 34799999999999876 4567788899999999999999999999999999999
Q ss_pred HHhccc
Q 029029 168 AKRLPR 173 (200)
Q Consensus 168 ~~~~~~ 173 (200)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-31 Score=193.26 Aligned_cols=165 Identities=30% Similarity=0.522 Sum_probs=138.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
..++||+|+|.+|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+|||||++.+...+..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 56889999999999999999999998887666666665543 34667888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEec
Q 029029 88 IVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETS 153 (200)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (200)
+|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+. +.+..++...++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 67888877753 57899999999999754 45677888888888888 899999
Q ss_pred CCCCCCHHHHHHHHHHhcccc
Q 029029 154 AKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~ 174 (200)
|++|.|++++|++|.+.+...
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 76
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-32 Score=195.78 Aligned_cols=165 Identities=28% Similarity=0.519 Sum_probs=141.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
....+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 45689999999999999999999999888777777776655 34566678889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEe
Q 029029 87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMET 152 (200)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 152 (200)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..+++.++ ++++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 78988887753 57999999999999742 4577888999998887 689999
Q ss_pred cCC-CCCCHHHHHHHHHHhccc
Q 029029 153 SAK-TATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 153 Sa~-~~~~i~~~~~~l~~~~~~ 173 (200)
||+ ++.|++++|+++.+.+..
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999987653
No 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=2.1e-32 Score=195.13 Aligned_cols=166 Identities=31% Similarity=0.546 Sum_probs=126.8
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 85 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 85 (200)
...+.+||+++|++|+|||||++++.++.+...+.++.+..+. .....++..+.+++|||||++.+...+..++.++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 3456899999999999999999999988876666666543332 223445667788999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCC----------CCHHHHHHHHHHcCC-cEEEec
Q 029029 86 AIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK----------VTAEEAQAYAQENGL-FFMETS 153 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 153 (200)
+++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+. +..+++..+++.++. +++++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 161 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS 161 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence 99999999999999986 7888887763 4789999999999976543 467788889988886 899999
Q ss_pred CCCCCCHHHHHHHHHHhccc
Q 029029 154 AKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~ 173 (200)
|++|.|++++|++|.+.+.+
T Consensus 162 a~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 162 SKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987753
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=4.1e-32 Score=199.80 Aligned_cols=169 Identities=31% Similarity=0.564 Sum_probs=149.8
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
......+||+|+|.+|+|||||+++|+.+.+...+.++.+.+........++..+.+.+|||||++.+...+..++.++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 44567899999999999999999997778877778889999998989999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.... .+...+++..+++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999998864 57899999999999764332 24666778889999999999999999999
Q ss_pred HHHHHhccccCC
Q 029029 165 YEIAKRLPRVQP 176 (200)
Q Consensus 165 ~~l~~~~~~~~~ 176 (200)
++|.+.+.....
T Consensus 167 ~~l~~~l~~~~~ 178 (221)
T 3gj0_A 167 LWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHTCTT
T ss_pred HHHHHHHHhCcc
Confidence 999999877644
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2.7e-32 Score=196.86 Aligned_cols=169 Identities=22% Similarity=0.286 Sum_probs=137.6
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcc-----------cCcceeeEEEEEE-EECCeEEEEEEEeCCCccc
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------ESTIGAAFFSQTL-AVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~ 71 (200)
.......+||+|+|++|+|||||++.+. +.+...+ .++.+.++..... ..++..+.+++|||||++.
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 3456778999999999999999997776 4444332 2344444433333 5567788999999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCC------CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc
Q 029029 72 YHSLAPMYYRGAAAAIIVYDIT------NQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN 145 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 145 (200)
+...+..++.++|++|+|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.+. ...+++..+++.+
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE 163 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence 9999999999999999999999 5567777778887773 23478999999999998653 7788899999999
Q ss_pred CC-cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 146 GL-FFMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 146 ~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
++ +++++||++|.|++++|++|.+.+.+...
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99 99999999999999999999998876643
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=9.9e-31 Score=188.61 Aligned_cols=167 Identities=28% Similarity=0.396 Sum_probs=137.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCcE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAAA 85 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ 85 (200)
...+||+++|++|+|||||+++|.+... .....++.+.++....+.+++..+.+.+|||+|.+. .......++..+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 3568999999999999999999986332 122224466677777788899999999999999876 45566778889999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029 86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
+++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence 999999999999999999988877653 3578999999999998767778888888888889999999999999999999
Q ss_pred HHHHHhcccc
Q 029029 165 YEIAKRLPRV 174 (200)
Q Consensus 165 ~~l~~~~~~~ 174 (200)
+++.+.+...
T Consensus 164 ~~l~~~~~~~ 173 (192)
T 2cjw_A 164 EGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 81
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=7.8e-30 Score=184.78 Aligned_cols=167 Identities=43% Similarity=0.765 Sum_probs=148.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...++|+|+|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||++|++.++..+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999988887777788888877888888999999999999999999888889999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|+|..++.++..+..|+..+......+.|+++++||+|+.+.+....++++.++...++.++++||+++.+++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999888889888876655678999999999998777788888999999999999999999999999999999
Q ss_pred HHhcccc
Q 029029 168 AKRLPRV 174 (200)
Q Consensus 168 ~~~~~~~ 174 (200)
.+.+.+.
T Consensus 163 ~~~~~~~ 169 (199)
T 2f9l_A 163 LTEIYRI 169 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=3.9e-31 Score=191.18 Aligned_cols=166 Identities=19% Similarity=0.301 Sum_probs=129.6
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 83 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 83 (200)
+......||+|+|.+|+|||||+++|+++.+.. .+.++.+..... + +...+.+++|||||++.+...+..++..+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 445678999999999999999999999888776 667777744332 2 34567899999999999999999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--------CCCeEEEEEeCcCccCCCCCCHHHHHHH------HHHcCCcE
Q 029029 84 AAAIIVYDITNQASFERAKKWVQELQAQGN--------PNMVMALAGNKADLLDARKVTAEEAQAY------AQENGLFF 149 (200)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~~~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~ 149 (200)
|++|+|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.. ..+++... ++..++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999888888765411 378999999999997652 22222221 13467789
Q ss_pred EEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 150 METSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
+++||++|.|++++|++|.+.+.....
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887654
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=9.5e-31 Score=184.67 Aligned_cols=160 Identities=22% Similarity=0.357 Sum_probs=127.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+++|++|+|||||+++|.++.+.. ..++.+.. ...+..+ ...+.+|||||++.+...+..++..+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 457999999999999999999999877643 44555533 3334444 578999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999888887776542 2678999999999986542 223332222 2245679999999999999
Q ss_pred HHHHHHHHhcccc
Q 029029 162 DIFYEIAKRLPRV 174 (200)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (200)
++|++|.+.+.++
T Consensus 158 ~l~~~l~~~i~~~ 170 (171)
T 1upt_A 158 EAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988654
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=3.9e-29 Score=180.06 Aligned_cols=164 Identities=43% Similarity=0.768 Sum_probs=148.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+++||++|.+++...+..++..+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45689999999999999999999998887778888888888888889999999999999999998888889999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+|+|..+..+++.+..|+..+......+.|+++++||.|+.+.+....+.++.++...++.++++||+++.+++++|++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999888889888776555678999999999998777778888999999999999999999999999999999
Q ss_pred HHhc
Q 029029 168 AKRL 171 (200)
Q Consensus 168 ~~~~ 171 (200)
.+.+
T Consensus 187 ~~~i 190 (191)
T 1oix_A 187 LTEI 190 (191)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=4.3e-31 Score=189.76 Aligned_cols=162 Identities=23% Similarity=0.340 Sum_probs=129.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++.. + ....+.+.+||+||++.+...+..++..+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3568999999999999999999999888877777777766543 2 23457899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNV 160 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 160 (200)
|+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 99999999999999988888876532 367899999999998653 22332222211 23457999999999999
Q ss_pred HHHHHHHHHhcccc
Q 029029 161 NDIFYEIAKRLPRV 174 (200)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (200)
+++|++|.+.+..+
T Consensus 173 ~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 173 DITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988664
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=3.6e-30 Score=186.49 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=123.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+++|++|+|||||+++|.++.+. .+.++.+.+. ..+.+++ ..+++|||||++.++..+..++..+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 55789999999999999999999976653 3555655543 3444554 78999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----------------cCCcE
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----------------NGLFF 149 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 149 (200)
+|+|+++++++..+..|+..+... ...++|+++|+||+|+.+ .+..+++..++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999999888764 236799999999999865 4667777776542 34579
Q ss_pred EEecCCCCCCHHHHHHHHHHhc
Q 029029 150 METSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
+++||++|.|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998765
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=9.1e-30 Score=183.01 Aligned_cols=163 Identities=21% Similarity=0.311 Sum_probs=128.8
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCc-ccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ-FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
...+.+||+|+|.+|+|||||+++|.++. +...+.++.+ .....+..+ +..+.+|||||++.+...+..++..+|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34668999999999999999999999766 3555556655 333444444 378999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCC
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKT 156 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 156 (200)
++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...+++..... ..+++++++||++
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999999999999888877533 57899999999999653 44555665553 2356899999999
Q ss_pred CCCHHHHHHHHHHhcccc
Q 029029 157 ATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (200)
|.|++++|++|.+.+.+.
T Consensus 171 ~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp TBTHHHHHHHHHHHC---
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999999988653
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.1e-29 Score=182.74 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=127.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+++|++|+|||||+++|.++.+. .+.++.+.. ...+..++ ..+.+|||||++.++..+..++..+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 56789999999999999999999987754 355565543 34455554 78999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH------------cCCcEEEecC
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE------------NGLFFMETSA 154 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 154 (200)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+ ....+++.+.... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999999998887664 236789999999999865 4556666665432 3457999999
Q ss_pred CCCCCHHHHHHHHHHhc
Q 029029 155 KTATNVNDIFYEIAKRL 171 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~~ 171 (200)
++|.|++++|++|.+.+
T Consensus 174 ~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CcCCCHHHHHHHHHhhC
Confidence 99999999999998753
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.7e-30 Score=184.05 Aligned_cols=165 Identities=20% Similarity=0.324 Sum_probs=126.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+|+|++|+|||||+++|+++.+. .+.++.+.... .+..+ +..+++|||||++.+...+..++.++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999977765 45566654432 33333 378999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887642 367999999999998653 34444444432 235689999999999999
Q ss_pred HHHHHHHHhccccCCCCC
Q 029029 162 DIFYEIAKRLPRVQPAPN 179 (200)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~ 179 (200)
++|++|.+.+....+...
T Consensus 167 ~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp HHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 999999998877655443
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=9.8e-30 Score=182.11 Aligned_cols=160 Identities=21% Similarity=0.289 Sum_probs=129.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+++|++|+|||||+++|+++. ...+.++.+.. ...+..+ ...+++|||||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 568999999999999999999999777 65666666644 3334443 578999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999998888877664 2367999999999999654 23343333322 245679999999999999
Q ss_pred HHHHHHHHhcccc
Q 029029 162 DIFYEIAKRLPRV 174 (200)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (200)
++|++|.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=5.9e-31 Score=184.60 Aligned_cols=157 Identities=20% Similarity=0.377 Sum_probs=121.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY 90 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 90 (200)
+||+++|++|+|||||+++|+++.+.. ..++.+.. ...+ ......+.+|||||++.+...+..++.++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877654 44555532 2222 234578999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHHHH
Q 029029 91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 91 d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 164 (200)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+. ....+...... ..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888887663 2367899999999999653 22332322211 134569999999999999999
Q ss_pred HHHHHhcccc
Q 029029 165 YEIAKRLPRV 174 (200)
Q Consensus 165 ~~l~~~~~~~ 174 (200)
++|.+.+.++
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999988643
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=5.4e-30 Score=182.89 Aligned_cols=160 Identities=21% Similarity=0.338 Sum_probs=125.0
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
+...+.+||+|+|.+|+|||||+++|+++.+ ....++.+.... .+..++ ..+.+||+||++.+...+..++..+|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3446789999999999999999999998776 455566665443 333333 78999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCC
Q 029029 85 AAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTAT 158 (200)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 158 (200)
++|+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 9999999999999999988888876642 367999999999998653 33444444332 234579999999999
Q ss_pred CHHHHHHHHHHhc
Q 029029 159 NVNDIFYEIAKRL 171 (200)
Q Consensus 159 ~i~~~~~~l~~~~ 171 (200)
|++++|++|.+.+
T Consensus 169 gi~~l~~~l~~~l 181 (181)
T 2h17_A 169 GLCQGLEWMMSRL 181 (181)
T ss_dssp THHHHHHHHHTC-
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.2e-30 Score=186.70 Aligned_cols=160 Identities=20% Similarity=0.373 Sum_probs=120.4
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|++|+|||||+++|+++.+.. ..++.+ .....+.. ....+.+|||||++.+...+..++..+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3568999999999999999999998776543 344444 22333333 347899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCH
Q 029029 87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNV 160 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 160 (200)
|+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999988988876532 357999999999998653 22333222211 13356999999999999
Q ss_pred HHHHHHHHHhccc
Q 029029 161 NDIFYEIAKRLPR 173 (200)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (200)
+++|++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.2e-29 Score=179.86 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=124.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...++|+++|++|+|||||+++|.++.+ ..+.++.|.. ...+..+ ...+++|||||++.++..+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5689999999999999999999996543 3455666533 3334444 578999999999999988999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++..... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888776543 23678999999999987543 3333333221 234579999999999999
Q ss_pred HHHHHHHHhcccc
Q 029029 162 DIFYEIAKRLPRV 174 (200)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (200)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.7e-28 Score=190.50 Aligned_cols=163 Identities=29% Similarity=0.484 Sum_probs=142.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
..++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++..+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 468999999999999999999998888777777765444 4556778889999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecC
Q 029029 89 VYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSA 154 (200)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 154 (200)
|+|++++.++..+. .|+..+.... .++|+++|+||+|+.+. +.+..+++..+++..++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999886 7888887764 48999999999999653 56778889999999997 8999999
Q ss_pred CCCCCHHHHHHHHHHhccc
Q 029029 155 KTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~ 173 (200)
++|.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.2e-29 Score=183.30 Aligned_cols=162 Identities=23% Similarity=0.320 Sum_probs=122.6
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEE--EEE-CCeEEEEEEEeCCCccccccch---hh
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQT--LAV-NDATVKFEIWDTAGQERYHSLA---PM 78 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~D~~G~~~~~~~~---~~ 78 (200)
....+.+||+++|++|||||||++++.+ .+... ++.+.+..... ..+ ++..+.+++|||+|++.+.... ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 3456789999999999999999998885 33332 33333332222 223 2566889999999999987776 78
Q ss_pred hhcCCcEEEEEEeCCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC-------CCCCHHHHHHHHH----Hc
Q 029029 79 YYRGAAAAIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-------RKVTAEEAQAYAQ----EN 145 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~~ 145 (200)
++.++|++|+|||++++ +++..+..|+..+... ..+.|+++|+||+|+.+. +.+.......+++ ..
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999999997 6777777888777544 368999999999998652 3344455667777 67
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029 146 GLFFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 146 ~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
+++++++||++ .|++++|+.+++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 88999999999 99999999999876
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.7e-30 Score=184.31 Aligned_cols=165 Identities=20% Similarity=0.412 Sum_probs=122.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhC--cccCcccCcceeeEEEEEEEE---CCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
++||+|+|++|||||||+++|.+. .+...+.++.|.++....... ++..+.+.+|||+|++.+...+..++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999964 344445667776665555443 235678999999999999888899999999
Q ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC---HHHHHHHHHHcCCc----EEEecCCC
Q 029029 85 AAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT---AEEAQAYAQENGLF----FMETSAKT 156 (200)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 156 (200)
++++|+|++++ .+++.+..|+..+.... ++.|+++|+||+|+.+.+... .+....+++.++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57888899999887653 578999999999986543322 22334555556776 99999999
Q ss_pred CC-CHHHHHHHHHHhccccC
Q 029029 157 AT-NVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 157 ~~-~i~~~~~~l~~~~~~~~ 175 (200)
+. +++++++.+.+.+....
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC-
T ss_pred CchhHHHHHHHHHHHHhccc
Confidence 97 99999999998876643
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=5.9e-32 Score=196.61 Aligned_cols=163 Identities=31% Similarity=0.525 Sum_probs=135.4
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 86 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 86 (200)
..+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ......++..+.+++|||||++.+...+..++.++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 36789999999999999999999998777666555554333 34455567778899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcCC-cEEEe
Q 029029 87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENGL-FFMET 152 (200)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 152 (200)
|+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...+++..++ +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999886 7877776643 478999999999997543 4555667778888887 89999
Q ss_pred cCCCCCCHHHHHHHHHHhc
Q 029029 153 SAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~ 171 (200)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=3.5e-30 Score=184.97 Aligned_cols=160 Identities=24% Similarity=0.366 Sum_probs=126.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+++|++|+|||||+++|.++.+.. ..++.+... .....+ ...+.+|||||++.+...+..++..+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999998766543 445555332 333333 578999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999888888776642 3689999999999986542 222232221 2234579999999999999
Q ss_pred HHHHHHHHhcccc
Q 029029 162 DIFYEIAKRLPRV 174 (200)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (200)
++|++|.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=6.3e-29 Score=177.30 Aligned_cols=160 Identities=23% Similarity=0.338 Sum_probs=124.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+++|++|+|||||+++|+++.+ ....++.+... ..+..+ +..+.+||+||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999997666 45556666443 333343 378999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 161 (200)
+|+|.+++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++...... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888876643 468999999999998653 334444443322 23479999999999999
Q ss_pred HHHHHHHHhcccc
Q 029029 162 DIFYEIAKRLPRV 174 (200)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (200)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=4.4e-28 Score=170.59 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=113.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhhhc-
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYYR- 81 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 81 (200)
..++|+++|++|+|||||+++|.+..+.....+..+.+.....+..++ ..+.+|||||+..+.. ....++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 368999999999999999999997655433333333333333444443 5799999999887642 3344554
Q ss_pred -CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 82 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
.+|++++|+|.++.+. ...|+..+.. .+.|+++|+||+|+.+.+.+.. +...+++.++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999998543 3456666654 3689999999999865444332 367778888999999999999999
Q ss_pred HHHHHHHHHhcc
Q 029029 161 NDIFYEIAKRLP 172 (200)
Q Consensus 161 ~~~~~~l~~~~~ 172 (200)
+++|+++.+.+.
T Consensus 153 ~~l~~~l~~~~~ 164 (165)
T 2wji_A 153 EELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998763
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=1e-27 Score=175.30 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=113.3
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCcccccc-chhhhhcCC
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHS-LAPMYYRGA 83 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~ 83 (200)
...+.+||+|+|++|+|||||+++|+++.+...+.+ .+.... .+.+++. .+.+++|||||++.+.. .+..++..+
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 456789999999999999999999998887665543 333332 2444443 68899999999998887 788889999
Q ss_pred cEEEEEEeCCCHH-HHHHHHHHHH-HHHH--hCCCCCeEEEEEeCcCccCCCCCCH--HHHHHHHH--------------
Q 029029 84 AAAIIVYDITNQA-SFERAKKWVQ-ELQA--QGNPNMVMALAGNKADLLDARKVTA--EEAQAYAQ-------------- 143 (200)
Q Consensus 84 d~~i~v~d~~~~~-s~~~~~~~~~-~i~~--~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~-------------- 143 (200)
|++|+|+|+++.. ++.....++. .+.. ....+.|+++|+||+|+.+...... +.+.....
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence 9999999999854 4555544444 3433 2345789999999999975432111 11111111
Q ss_pred -------------------Hc--CCcEEEecCCCC------CCHHHHHHHHHHhc
Q 029029 144 -------------------EN--GLFFMETSAKTA------TNVNDIFYEIAKRL 171 (200)
Q Consensus 144 -------------------~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~~ 171 (200)
.. +++|++|||++| .|++++|++|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 567999999999 99999999998764
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.2e-27 Score=169.88 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=120.2
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 84 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 84 (200)
....+.++|+|+|++|+|||||+++|+++.+.....+..+.+.....+..++ ..+.+|||||++.+...+..++..+|
T Consensus 3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 80 (178)
T 2lkc_A 3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTD 80 (178)
T ss_dssp TTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred CcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence 3456789999999999999999999998877665555555444445555555 46789999999999999888999999
Q ss_pred EEEEEEeCCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC---------CcEEEe
Q 029029 85 AAIIVYDITNQ---ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG---------LFFMET 152 (200)
Q Consensus 85 ~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 152 (200)
++++|+|++++ .+++. +..+ ...+.|+++|+||+|+.+. ..+.........+ ++++++
T Consensus 81 ~~i~v~d~~~~~~~~~~~~----l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2lkc_A 81 IVILVVAADDGVMPQTVEA----INHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKL 150 (178)
T ss_dssp EEEEEEETTCCCCHHHHHH----HHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEEC
T ss_pred EEEEEEECCCCCcHHHHHH----HHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEE
Confidence 99999999883 33322 2222 2357899999999998653 2333333332221 479999
Q ss_pred cCCCCCCHHHHHHHHHHhccccCC
Q 029029 153 SAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
||++|.|++++|++|.+.+...+.
T Consensus 151 Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 151 SAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred ecCCCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999999998876554
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.5e-29 Score=186.96 Aligned_cols=166 Identities=22% Similarity=0.264 Sum_probs=121.4
Q ss_pred CCCccceeEEEECCC---------CCCHHHHHHHHHh---CcccCcccCcc-eeeEEEEE--------------EEECCe
Q 029029 5 GNKNINAKLVLLGDV---------GAGKSSLVLRFVK---GQFIEFQESTI-GAAFFSQT--------------LAVNDA 57 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 57 (200)
......+||+|+|.+ |+|||||+++|++ +.+...+.++. +.++.... ..+++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345678999999999 9999999999997 34444444433 22221111 123566
Q ss_pred EEEEEEEe-----------------------CCCccccccchhhhhc---------------------CCcEEEEEEeCC
Q 029029 58 TVKFEIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAIIVYDIT 93 (200)
Q Consensus 58 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 93 (200)
.+.+++|| ++|++.+...+..++. ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6666666666767766 799999999999
Q ss_pred CH--HHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-cCCcEEEecCCCCCCHHHHHHHHHH
Q 029029 94 NQ--ASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 94 ~~--~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
++ .+++.+..|+..+... ...++|+++|+||+|+.+.+.+ ++...++.. .+++++++||++|.|++++|++|.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 8999999999888764 3357899999999998654433 567777766 4889999999999999999999998
Q ss_pred hcc
Q 029029 170 RLP 172 (200)
Q Consensus 170 ~~~ 172 (200)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=4.3e-27 Score=181.05 Aligned_cols=161 Identities=20% Similarity=0.301 Sum_probs=126.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCccc---CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYY 80 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 80 (200)
..+||+++|++|+|||||+++|+++... ..+.++.+..+. ...+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999976322 134445544433 333334 688999999999988 77888899
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEeCcCccC--CCC----CCHHHHHHHHHHcC---CcE
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQ--GNPNMVMALAGNKADLLD--ARK----VTAEEAQAYAQENG---LFF 149 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 149 (200)
.++|++|+|+|++++++++.+..|...+... ..+++|+++|+||+|+.+ .+. ...+++.++++.++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999999999887665544332 146899999999999976 333 45577888888887 789
Q ss_pred EEecCCCCCCHHHHHHHHHHhccc
Q 029029 150 METSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
+++||++ .++.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999998887654
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=7e-27 Score=172.70 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=115.7
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc------cc---ccchhh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE------RY---HSLAPM 78 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~---~~~~~~ 78 (200)
...++|+|+|++|+|||||+++|+++.+.....+....+......... ...+.+|||||+. .. ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 567999999999999999999999776542221211122222222222 3679999999983 21 112234
Q ss_pred hhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH---HHHHHHHHcC--CcEEE
Q 029029 79 YYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE---EAQAYAQENG--LFFME 151 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 151 (200)
++..+|++|+|+|++++.++. ....|+..+... ..+.|+++|+||+|+.+.+.+... ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 578899999999999987664 224555555543 247899999999999876666554 4566666676 88999
Q ss_pred ecCCCCCCHHHHHHHHHHhccccC
Q 029029 152 TSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+||++|.|++++|++|.+.+....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999886553
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.6e-26 Score=188.78 Aligned_cols=167 Identities=22% Similarity=0.363 Sum_probs=126.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
...+||+|+|.+|+|||||+++|+++.+. ...++.+..+.. +...++.+.+|||+|++.+...+..++..+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999988754 344555544332 3334578999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (200)
+|||+++++++..+..|+..+.... ..++|+++|+||+|+.+. ....++..... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999998888876642 368999999999998653 23333332221 123459999999999999
Q ss_pred HHHHHHHHhccccCCCCCCC
Q 029029 162 DIFYEIAKRLPRVQPAPNPS 181 (200)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~ 181 (200)
++|++|.+.+....+...+.
T Consensus 473 ~l~~~l~~~~~~~~~~~~~~ 492 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAALEH 492 (497)
T ss_dssp HHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHhcCCCCCcc
Confidence 99999999998877665543
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=6.1e-27 Score=167.72 Aligned_cols=159 Identities=17% Similarity=0.153 Sum_probs=120.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR 81 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 81 (200)
.+.++|+++|++|+|||||+++|.+........+..+.+.....+..+ +..+.+|||||++.+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 467999999999999999999999766544444444444444445544 3789999999998764 23445553
Q ss_pred --CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029 82 --GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159 (200)
Q Consensus 82 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (200)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+.+.+. .....+++..+++++++||+++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5999999999876 4455667766654 468999999999986544443 346777888899999999999999
Q ss_pred HHHHHHHHHHhccccC
Q 029029 160 VNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 160 i~~~~~~l~~~~~~~~ 175 (200)
++++|+++.+.+....
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887654
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.9e-28 Score=187.43 Aligned_cols=160 Identities=20% Similarity=0.352 Sum_probs=119.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+.+||+|+|.+|+|||||+++|.++.+... .++.+..+ ..+. ...+.+++|||||++.+...+..++..+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999997765433 24444332 2232 34578999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029 88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN 161 (200)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 161 (200)
+|||++++.++..+..|+..+... ...++|+++|+||+|+.+.. ..+++...... .+++++++||++|.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 999999999999988877776553 23689999999999987543 23333332211 23469999999999999
Q ss_pred HHHHHHHHhcccc
Q 029029 162 DIFYEIAKRLPRV 174 (200)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (200)
++|++|.+.+.++
T Consensus 316 el~~~l~~~l~~~ 328 (329)
T 3o47_A 316 EGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=3e-27 Score=170.25 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=108.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC----------ccccccchh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLAP 77 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 77 (200)
...++|+|+|++|+|||||+++|+++.+.....++.+.+........++ .+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999998776666666666555555544443 599999999 666666677
Q ss_pred hhhcCC---cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--HHHHH-HHHHcCCcEEE
Q 029029 78 MYYRGA---AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA--EEAQA-YAQENGLFFME 151 (200)
Q Consensus 78 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~~ 151 (200)
.++..+ |++++|+|.+++.++.... ++..+.. .+.|+++|+||+|+.+.+.+.. +++.+ +....+.++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 777766 9999999999876655432 2222222 5689999999999976543322 22222 22224678999
Q ss_pred ecCCCCCCHHHHHHHHHHhcc
Q 029029 152 TSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
+||++|.|++++|++|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998764
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=1.3e-26 Score=178.41 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=132.8
Q ss_pred CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccccc---------
Q 029029 4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYH--------- 73 (200)
Q Consensus 4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~--------- 73 (200)
.+...+...|+++|.+|+|||||+|+|++..+. ...+..+++........... ...+.+|||||.....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 456677899999999999999999999976653 23334444433333333233 6789999999986544
Q ss_pred -cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEE
Q 029029 74 -SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFM 150 (200)
Q Consensus 74 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~ 150 (200)
.....++..+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+.............+.+..+ .+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 4556678899999999999988777776666777665 368999999999997444555666777777765 7899
Q ss_pred EecCCCCCCHHHHHHHHHHhccccCCCCCCCCceeccCC
Q 029029 151 ETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRP 189 (200)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (200)
++||++|.|++++|+++.+.+.+... .++.+.+ +++|
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~~-~~~~~~~-td~~ 196 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGEP-LFPEDMI-TDLP 196 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCCC-SSCTTCC-BCCC
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCCC-CCCcccc-cCCC
Confidence 99999999999999999999876544 4555443 3443
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=9.9e-28 Score=183.68 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=119.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccC---cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---chhhhhcCCcE
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---LAPMYYRGAAA 85 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 85 (200)
||+++|..|+|||||++++.++.... ...++.|..+.. ++ ..+++++|||+|+++++. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999887543322 245667666543 22 347899999999999964 36889999999
Q ss_pred EEEEEeCCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC-------CCCCHHHHHHHHHH----cCCcEEEe
Q 029029 86 AIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-------RKVTAEEAQAYAQE----NGLFFMET 152 (200)
Q Consensus 86 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 152 (200)
+|+|||++++ +....+..|+..+... .+++|+++++||+|+... +++..++.+++++. ++++|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3333444445555443 468999999999999754 23455556666664 67899999
Q ss_pred cCCCCCCHHHHHHHHHHhccccC
Q 029029 153 SAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
||++ .+|.++|..+++.+.++.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhH
Confidence 9998 589999999999887643
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.5e-26 Score=173.85 Aligned_cols=156 Identities=16% Similarity=0.082 Sum_probs=118.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch------hhhh-
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA------PMYY- 80 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~- 80 (200)
.+.++|+++|++|+|||||+++|++....... ..|++.......+...+..+.+|||||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 45789999999999999999999976654322 23445544444444445789999999998776532 4454
Q ss_pred -cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029 81 -RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159 (200)
Q Consensus 81 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (200)
..+|++++|+|.++.+.. ..|+..+.. .+.|+++++||+|+.+.+.+.. +...+++.++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999986543 235555544 3689999999999876544443 36778888999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 029029 160 VNDIFYEIAKRLP 172 (200)
Q Consensus 160 i~~~~~~l~~~~~ 172 (200)
++++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999765
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=7.5e-27 Score=167.39 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=114.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSLAPMY 79 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 79 (200)
+||+++|++|+|||||+++|+++.+.....+.. +......... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999877655444433 3323333333 689999999 55666666667
Q ss_pred hcC-CcEEEEEEeCCCHHHHHHH-HHHHHH---------HHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc
Q 029029 80 YRG-AAAAIIVYDITNQASFERA-KKWVQE---------LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF 148 (200)
Q Consensus 80 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (200)
+.. ++++++++++.+..++..+ ..|... .......+.|+++|+||+|+.+.. .+....+++..+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 766 7766666666666667665 555432 122223578999999999987643 55677888888764
Q ss_pred -------EEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 149 -------FMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 149 -------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
++++||++|.|++++|++|.+.+.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876654
No 115
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=1.4e-26 Score=174.97 Aligned_cols=156 Identities=21% Similarity=0.184 Sum_probs=119.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc-
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR- 81 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 81 (200)
..++|+++|++|+|||||+++|++.... .....|++.......+.. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3579999999999999999999976532 223345565555555665 6789999999998765 34455554
Q ss_pred -CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 82 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
.+|++++|+|.++.+.. ..|...+.. .++|+++++||+|+.+.+.+. .+...+++.++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986543 345555544 478999999999986544443 3467788888999999999999999
Q ss_pred HHHHHHHHHhcccc
Q 029029 161 NDIFYEIAKRLPRV 174 (200)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (200)
+++|+++.+.+...
T Consensus 152 ~el~~~i~~~~~~~ 165 (272)
T 3b1v_A 152 DQVVKKAAHTTTST 165 (272)
T ss_dssp HHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876543
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=1.2e-26 Score=164.39 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=111.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch--------hhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY 79 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 79 (200)
...+|+|+|++|+|||||+++|.+.... ....+..+.++....+.+++ ..+.+|||||+....... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999976532 11222333344555566665 358999999986532211 135
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (200)
+..+|++++|+|.+++.+++ ...|+..+......++|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999887765 34677777666556799999999999854311 11223467899999999999
Q ss_pred HHHHHHHHHHhcccc
Q 029029 160 VNDIFYEIAKRLPRV 174 (200)
Q Consensus 160 i~~~~~~l~~~~~~~ 174 (200)
++++|++|.+.+...
T Consensus 153 v~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 153 VDVLRNHLKQSMGFD 167 (172)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999887543
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=5.4e-27 Score=192.91 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=126.9
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEE--------EECCeEEEEEEEeCCCccccccchh
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTL--------AVNDATVKFEIWDTAGQERYHSLAP 77 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~D~~G~~~~~~~~~ 77 (200)
.....+||+++|.+|+|||||+++|.++.+.....++.+.++..... ..++....+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 34668999999999999999999999888877777888777654421 1123467899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 157 (200)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (200)
.++..+|++|+|+|+++. +.+..|+..+.... .+.|+++|+||+|+.+.+.+..+.++..+...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999865 45567888887764 46899999999999887778888888888889999999999999
Q ss_pred CCHHHHHHHHHHhccccC
Q 029029 158 TNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~ 175 (200)
.|++++++++.+.+....
T Consensus 193 ~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp --CTTHHHHHHHHHTCTT
T ss_pred cCHHHHHHHHHHHHhccc
Confidence 999999999999887654
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=2.9e-26 Score=160.01 Aligned_cols=150 Identities=19% Similarity=0.149 Sum_probs=104.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhhhcC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HSLAPMYYRG 82 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 82 (200)
.||+++|++|+|||||+++|.++.... ...+..+.+........++ ..+.+|||||.... ...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 589999999999999999999776431 1222222333344444444 37899999998763 3445567889
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHH
Q 029029 83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVN 161 (200)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 161 (200)
+|++++|+|.+++.+.. ..++..+... .+.|+++|+||+|+.+.. ++...++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 99999999999853322 2223222222 468999999999986542 2233444 5677 79999999999999
Q ss_pred HHHHHHHHhc
Q 029029 162 DIFYEIAKRL 171 (200)
Q Consensus 162 ~~~~~l~~~~ 171 (200)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999876
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=5.7e-26 Score=170.39 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=112.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc----------chhhhh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LAPMYY 80 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 80 (200)
.+|+++|++|||||||+|+|++........+..+.+........++ ..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3899999999999999999997755433334444444444555554 4899999999877654 344566
Q ss_pred --cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 81 --RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
..+|++|+|+|.++.+....+..++. ..+.|+++|+||+|+.+.+.... ....+.+..+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 88999999999998765544333322 24789999999999865443322 2456777889999999999999
Q ss_pred CHHHHHHHHHHh
Q 029029 159 NVNDIFYEIAKR 170 (200)
Q Consensus 159 ~i~~~~~~l~~~ 170 (200)
|++++|+++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999987
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.6e-25 Score=160.91 Aligned_cols=156 Identities=19% Similarity=0.267 Sum_probs=113.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC----------ccccccchh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLAP 77 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 77 (200)
...+||+|+|++|+|||||+++|+++. .....++.+.+........+. .+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 557899999999999999999999766 444556666555444444433 588999999 555666666
Q ss_pred hhhcCC---cEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHH-cCCcE
Q 029029 78 MYYRGA---AAAIIVYDITNQASF--ERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQE-NGLFF 149 (200)
Q Consensus 78 ~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~~ 149 (200)
.++..+ |++++|+|.++..+. ..+..|+.. .+.|+++|+||+|+.+... ...+.+..++.. .++++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 676655 999999998875332 223334332 2689999999999975432 223445555555 34789
Q ss_pred EEecCCCCCCHHHHHHHHHHhccc
Q 029029 150 METSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
+++||++|.|++++|++|.+.+.+
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999998754
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=2.8e-26 Score=173.86 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=114.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc----------hhh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------APM 78 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 78 (200)
++++|+++|++|+|||||+|+|++...... ...|++.......+...+..+.+|||||...+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999997764322 33344444444444333457899999998776521 222
Q ss_pred hh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029 79 YY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 156 (200)
Q Consensus 79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (200)
++ ..+|++|+|+|.++.+....+..+ +... ++|+++|+||+|+.+.+.... ....+++..+++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCC
Confidence 32 799999999999986554443333 3333 689999999999865433221 25667778899999999999
Q ss_pred CCCHHHHHHHHHHhcccc
Q 029029 157 ATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (200)
|.|++++|+++.+.+...
T Consensus 153 g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GHHHHHHHHHHHTCCCCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999887654
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=5.9e-26 Score=166.88 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=112.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCc----------cccccch
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQ----------ERYHSLA 76 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~ 76 (200)
...++|+|+|.+|+|||||+++|++...........+++......... .....+.+|||||. +.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 457899999999999999999999776433444555555544444444 44567999999994 3334445
Q ss_pred hhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHHH-------
Q 029029 77 PMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQE------- 144 (200)
Q Consensus 77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~------- 144 (200)
..++.. +|++++|+|.+++.+. ....++..+.. .++|+++|+||+|+....... .+.+......
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 555554 7889999999875331 22334444443 468999999999987543221 1222222222
Q ss_pred cCCcEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 145 NGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
.+.+++++||++|.|++++|++|.+.+.....
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 45689999999999999999999998876644
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=8.3e-25 Score=165.59 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=118.1
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY-- 80 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 80 (200)
+.++|+++|++|+|||||+++|++........+..+.+.........+ ..+.+|||||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999997766433344444444444444444 4599999999887665 444555
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
..+|++++|+|.++.+ ....|+..+... ...|+++++||+|+.+.+....+ ...+.+..+++++++||++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 6899999999998863 233344444443 23899999999998654433332 67778888999999999999999
Q ss_pred HHHHHHHHHhccccC
Q 029029 161 NDIFYEIAKRLPRVQ 175 (200)
Q Consensus 161 ~~~~~~l~~~~~~~~ 175 (200)
+++|+++.+.+....
T Consensus 154 ~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 154 EELKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999876543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=2.5e-25 Score=170.52 Aligned_cols=167 Identities=16% Similarity=0.116 Sum_probs=112.5
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPM 78 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 78 (200)
..+..+|+++|.+|+|||||+|+|++..... ..+..+++.............++.+|||||... +......
T Consensus 4 ~~~~g~V~ivG~~nvGKSTLln~l~g~~~~i-vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 4 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCceee-ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 3567789999999999999999999766532 222222222221111223356899999999875 3344556
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHH-HHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc--CCcEEEecCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN--GLFFMETSAK 155 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 155 (200)
++..+|++++|+|.+++.+.. ..|+ ..+... ..+.|+++|+||+|+.+.... +....+.+ ..+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCC
Confidence 788999999999998763332 3444 344433 247899999999998653220 22222222 3468999999
Q ss_pred CCCCHHHHHHHHHHhccccCCCCCCCC
Q 029029 156 TATNVNDIFYEIAKRLPRVQPAPNPSG 182 (200)
Q Consensus 156 ~~~~i~~~~~~l~~~~~~~~~~~~~~~ 182 (200)
+|.|+++++++|.+.+.+... .++.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~~~~-~y~~~ 181 (301)
T 1wf3_A 156 DERQVAELKADLLALMPEGPF-FYPED 181 (301)
T ss_dssp CHHHHHHHHHHHHTTCCBCCC-SSCTT
T ss_pred CCCCHHHHHHHHHHhcccCCC-CCCcc
Confidence 999999999999998865433 34443
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2.4e-25 Score=163.19 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=105.6
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCc---ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG- 82 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 82 (200)
..+.++|+|+|++|+|||||+++|.+..+... ..++.+.. .....+.+|||||++.++..+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45689999999999999999999998775432 22222221 244579999999999998888888877
Q ss_pred ---CcEEEEEEeCC-CHHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCcCccCCCCCC------HHHHHHHHHHcCCc
Q 029029 83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDARKVT------AEEAQAYAQENGLF 148 (200)
Q Consensus 83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 148 (200)
+|++|+|+|.+ ++.++..+..|+..+... ...++|+++|+||+|+.+...+. .+++..++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888888777654 34689999999999997655433 34466666777788
Q ss_pred EEEecCCCCCC
Q 029029 149 FMETSAKTATN 159 (200)
Q Consensus 149 ~~~~Sa~~~~~ 159 (200)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998764
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=8.4e-25 Score=174.02 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=126.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APM 78 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~ 78 (200)
....++|+|+|+.|+|||||+++|++..+. ....+..+.+.........+. ..+.+|||||+..+... ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 355789999999999999999999866542 112222223333344444433 37999999999876544 344
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
++..+|++|+|+|.+.. .....|+..+... ++|+++|+||+|+...+.. +....+.+.++++++++||++|.
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCC
Confidence 78899999999999433 2335666666654 6899999999999765543 55666666788999999999999
Q ss_pred CHHHHHHHHHHhccccCCCC------CCCCceeccCCCCCCCCCC
Q 029029 159 NVNDIFYEIAKRLPRVQPAP------NPSGMVLMDRPGERTASAS 197 (200)
Q Consensus 159 ~i~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 197 (200)
|++++|++|.+.+.+....+ .+.+.+....|.+..++++
T Consensus 182 gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkg 226 (423)
T 3qq5_A 182 GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKG 226 (423)
T ss_dssp STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTT
T ss_pred CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCC
Confidence 99999999999997662222 2445666666776666553
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=3.2e-24 Score=173.27 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=97.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLA--------PM 78 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~ 78 (200)
..++|+|+|++|+|||||+|+|++.... ...+..+++. ....+..++ ..+.+|||||...+...+ ..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERA-IVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 3588999999999999999999865421 1223333333 333444444 679999999987655333 33
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 158 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (200)
++..+|++++|+|.+++.++..+..+...+... .++|+++|+||+|+.+.... ....+.+....+++++||++|.
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~ 383 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGD 383 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCC
Confidence 678999999999999887665433333333333 26899999999998765432 2233444334789999999999
Q ss_pred CHHHHHHHHHHhcc
Q 029029 159 NVNDIFYEIAKRLP 172 (200)
Q Consensus 159 ~i~~~~~~l~~~~~ 172 (200)
|+++++++|.+.+.
T Consensus 384 GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 384 GIDTLKQHMGDLVK 397 (476)
T ss_dssp SHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999887
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=5.9e-23 Score=161.09 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=117.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc---------cchhh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPM 78 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 78 (200)
...++|+++|++|+|||||+++|.+........+..+........... ...+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 467899999999999999999999765321111222122222222222 4679999999975421 11223
Q ss_pred hhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029 79 YYRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 156 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (200)
+...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+..... .++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998876 56777788888877533 789999999999865432 2446666677889999999999
Q ss_pred CCCHHHHHHHHHHhcccc
Q 029029 157 ATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (200)
|.|++++++++.+.+...
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=5e-24 Score=171.27 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=111.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEE--EEEEECCeEEEEEEEeCCCcc----------ccccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQE----------RYHSL 75 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~----------~~~~~ 75 (200)
...+||+++|.+|+|||||+|+|++.... ...+..+++... ..+..++ ..+++|||||+. .+...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHH
Confidence 35689999999999999999999976542 122233333332 3344444 359999999973 33322
Q ss_pred hh-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH-HH----HcCCcE
Q 029029 76 AP-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY-AQ----ENGLFF 149 (200)
Q Consensus 76 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-~~----~~~~~~ 149 (200)
.. .++..+|++++|+|++++.++... .|+..+.. .++|+++|+||+|+.+.+....++..+. .+ ..++++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence 22 367889999999999987766554 46665554 4789999999999987655444333222 22 236789
Q ss_pred EEecCCCCCCHHHHHHHHHHhccccC
Q 029029 150 METSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+++||++|.|++++|+.+.+.+....
T Consensus 326 ~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 326 LFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEecccCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999988776543
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=8.5e-24 Score=170.78 Aligned_cols=162 Identities=21% Similarity=0.220 Sum_probs=115.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE--EEEEEECCeEEEEEEEeCCC----------ccccccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAG----------QERYHSL 75 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 75 (200)
...++|+++|.+|+|||||+++|++.... ...+..+++.. ...+..++ ..+++||||| ++.+...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcc-ccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence 45789999999999999999999965421 12223333322 23344444 3799999999 4555544
Q ss_pred hh-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-----CCcE
Q 029029 76 AP-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-----GLFF 149 (200)
Q Consensus 76 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~ 149 (200)
.. .++..+|++|+|+|.++... +....|+..+.. .++|+++|+||+|+.+.+....++..+.++.. .+++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 44 36789999999999987533 233445555544 46899999999999877666667777766654 5789
Q ss_pred EEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 150 METSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
+++||++|.|++++|+++.+.+.....
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988765543
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=1.2e-23 Score=163.47 Aligned_cols=161 Identities=18% Similarity=0.187 Sum_probs=116.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhhhh---cCC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMYY---RGA 83 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~ 83 (200)
.+|+|+|.+|+|||||+++|++........+..+.......+.+++ ...+.+|||||... ...+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 3689999999999999999986543211111111111122233332 25799999999643 333444444 459
Q ss_pred cEEEEEEeCCC---HHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEEEecCCC
Q 029029 84 AAAIIVYDITN---QASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFMETSAKT 156 (200)
Q Consensus 84 d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 156 (200)
|++|+|+|+++ +.+++.+..|+..+.... ...+|+++|+||+|+.... +....+.+.+. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 778888888998888764 2579999999999986432 34556666665 6899999999
Q ss_pred CCCHHHHHHHHHHhccccCC
Q 029029 157 ATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~~~ 176 (200)
+.|+++++++|.+.+.+...
T Consensus 314 g~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 314 REGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SSTTHHHHHHHHHHHTSCCC
T ss_pred CcCHHHHHHHHHHHHhhCcc
Confidence 99999999999999876554
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=2.6e-22 Score=159.81 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=118.7
Q ss_pred CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEE---------E----------EEECCeEEEEEEEe
Q 029029 5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ---------T----------LAVNDATVKFEIWD 65 (200)
Q Consensus 5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~---------~----------~~~~~~~~~~~i~D 65 (200)
+...+.++|+++|++++|||||+++|++....... .....+.... . .........+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 35567899999999999999999999964322111 0000000000 0 00012237899999
Q ss_pred CCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHHHHHHHH
Q 029029 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEEAQAYAQ 143 (200)
Q Consensus 66 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~ 143 (200)
|||++.+...+...+..+|++|+|+|.+++.++.+..+|+..+.... ..|+++++||+|+.+.... ..+++..+..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998766677777777766653 3589999999998754321 1122233322
Q ss_pred Hc---CCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 144 EN---GLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 144 ~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
.. +++++++||++|.|+++++++|.+.+....
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 22 568999999999999999999999776543
No 133
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=2.3e-23 Score=155.56 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=115.6
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPM 78 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 78 (200)
....+||+|+|.+|+|||||+|+|++...........+++...........+..+.+|||||.. .+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3568999999999999999999999776544333333333323222222334679999999962 22222222
Q ss_pred hh----cCCcEEEEEEeCCCHHHHH-HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC------CCHHHHHHHHHHcCC
Q 029029 79 YY----RGAAAAIIVYDITNQASFE-RAKKWVQELQAQGNPNMVMALAGNKADLLDARK------VTAEEAQAYAQENGL 147 (200)
Q Consensus 79 ~~----~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~ 147 (200)
++ ..+|++|+|+|++.....+ .+..++..+......+.|+++++||.|+.+... ...+.++.+.+..+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC
Confidence 33 8999999999998532211 223344443322224689999999999865321 111346777778888
Q ss_pred cEEEecCCC-----CCCHHHHHHHHHHhccccCCCCCCCCce
Q 029029 148 FFMETSAKT-----ATNVNDIFYEIAKRLPRVQPAPNPSGMV 184 (200)
Q Consensus 148 ~~~~~Sa~~-----~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 184 (200)
.++.+++.. +.+++++++.+.+.+.+..+.+++.++.
T Consensus 178 ~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~ 219 (247)
T 3lxw_A 178 RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY 219 (247)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH
T ss_pred eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 888776655 5899999999999999888888887654
No 134
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=4.3e-23 Score=158.25 Aligned_cols=174 Identities=18% Similarity=0.164 Sum_probs=114.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccchhh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPM 78 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 78 (200)
.+..+|+|+|++|+|||||+++|++..... ..+..+++.......+......+.+|||||.. .+......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i-~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc-cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 455689999999999999999999765421 12222222211111122234679999999987 23344456
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTA 157 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (200)
++..+|++++|+|.++ +.....|+..... ..+.|+++++||+|+........+.+..+.+..+. .++++||+++
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 6789999999999976 2222233333222 24689999999999865222222334555555665 6899999999
Q ss_pred CCHHHHHHHHHHhccccCCCCCCCCceeccCC
Q 029029 158 TNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRP 189 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (200)
.|++++++++.+.+.+... .++.+.+ ++.|
T Consensus 160 ~~v~~l~~~i~~~l~~~~~-~~~~~~~-~d~~ 189 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEATH-HFPEDYI-TDRS 189 (301)
T ss_dssp TTHHHHHHHHHTTCCBCCC-SSCTTCC-SCCS
T ss_pred CCHHHHHHHHHHhCCcCCC-CCCcccc-CCCC
Confidence 9999999999998875433 4444433 4444
No 135
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=8.6e-23 Score=151.76 Aligned_cols=172 Identities=15% Similarity=0.166 Sum_probs=110.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCc--ceeeEEEEEEEECCeEEEEEEEeCCCcc-----------ccc
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--IGAAFFSQTLAVNDATVKFEIWDTAGQE-----------RYH 73 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~ 73 (200)
....++|+|+|++|+|||||+++|++........+. .+..........++ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 356799999999999999999999987765444332 22233333344443 578999999943 233
Q ss_pred cchhhhhcCCcEEEEEEeCCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC------HHHHHHHHHHc
Q 029029 74 SLAPMYYRGAAAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT------AEEAQAYAQEN 145 (200)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~ 145 (200)
.....++..+|++|+|+|.+.... ...+..+...+... ...|+++|+||+|+.+...+. .+.++.+.+..
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 334445668899999999875322 22222232222222 346899999999986654333 23577788888
Q ss_pred CCcEEEecCCCC-----CCHHHHHHHHHHhccccCCCCCCCC
Q 029029 146 GLFFMETSAKTA-----TNVNDIFYEIAKRLPRVQPAPNPSG 182 (200)
Q Consensus 146 ~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~~~~~~~~~~ 182 (200)
+..++.++...+ .++.+++..+.+.+.+..+.++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~ 223 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNR 223 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC---
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 888888877644 6899999999888877666555544
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=7.3e-22 Score=157.42 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=107.0
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc---cCcccC--cceeeEEEEEEEE-------------C--C----eEEEE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQES--TIGAAFFSQTLAV-------------N--D----ATVKF 61 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 61 (200)
.+...++|+++|+.++|||||+++|++... .....+ +....+....... + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 446789999999999999999999984322 222222 3333333322211 1 1 13789
Q ss_pred EEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHH
Q 029029 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQ 139 (200)
Q Consensus 62 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~ 139 (200)
.+|||||++.+...+...+..+|++|+|+|.+++....+..+.+..+... ...|+++++||+|+.+... ...+++.
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 99999999988777777778899999999999532112222223333333 2347999999999976443 2345566
Q ss_pred HHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 140 AYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 140 ~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
++++. .+++++++||++|.|+++++++|.+.+...
T Consensus 162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 66654 367899999999999999999999877654
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=6.6e-23 Score=164.88 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=99.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE--EEEEEECCeEEEEEEEeCCCccc---------cccchhhh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQER---------YHSLAPMY 79 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 79 (200)
.+|+++|.+|+|||||+|+|++... .......|++.. .......+ ..+++|||||.+. +......+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 3799999999999999999996553 223344454433 33344444 4689999999764 23345567
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH-HHHHHHcCC-cEEEecCCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA-QAYAQENGL-FFMETSAKTA 157 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~ 157 (200)
+..+|++++|+|..++.+... .++..+... .++|+++|+||+|+.+. . .... ..+. ..++ .++++||++|
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHN 150 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCC
Confidence 899999999999987543322 222222222 36899999999997432 0 1222 3333 4566 6899999999
Q ss_pred CCHHHHHHHHHHhcccc
Q 029029 158 TNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~ 174 (200)
.|++++++++.+.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 151 INLDTMLETIIKKLEEK 167 (439)
T ss_dssp BSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcccc
Confidence 99999999999988643
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=4.8e-23 Score=166.52 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=109.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhhh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-RYHS--------LAPMY 79 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~ 79 (200)
.++|+|+|.+|+|||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999976532 22222223333344455544 569999999987 5432 12356
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (200)
+..+|++|+|+|.+++.+++.. .+++.+ .++|+++|+||+|+.+. ...+++..+. ..+.+++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 7899999999999987666543 223332 36799999999999653 3445554443 2447899999999999
Q ss_pred HHHHHHHHHHhccc
Q 029029 160 VNDIFYEIAKRLPR 173 (200)
Q Consensus 160 i~~~~~~l~~~~~~ 173 (200)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998763
No 139
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=1.6e-21 Score=155.50 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=113.0
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc---cCcccC--cceeeEEEEEEEE-------------C--C----eEEEE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQES--TIGAAFFSQTLAV-------------N--D----ATVKF 61 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 61 (200)
.+...++|+++|+.++|||||+++|++... .....+ +....+....... + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 456789999999999999999999985322 222222 3333333322211 1 1 13789
Q ss_pred EEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHH
Q 029029 62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQ 139 (200)
Q Consensus 62 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~ 139 (200)
.+|||||++.+...+...+..+|++|+|+|.++.....+..+.+..+.... ..|+++++||+|+.+... ...+++.
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 999999999887777777788999999999985321112222233333332 257999999999876432 1233445
Q ss_pred HHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 140 AYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 140 ~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
.+++. .+++++++||++|.|+++++++|.+.+...
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 55443 467899999999999999999999877654
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=1.6e-22 Score=152.05 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=112.6
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCc-ceeeEEEEEEEECCeEEEEEEEeCCCccccccch--------
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQEST-IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------- 76 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------- 76 (200)
....++|+|+|++|+|||||+++|++... .....+. .+........... +..+.+|||||........
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34579999999999999999999997663 3333332 2233333333333 3579999999986543222
Q ss_pred ---hhhhcCCcEEEEEEeCCCHHHHH-HHHHHHHHHHHhCCCCCeEEEEEe-CcCccCCCCCCH-------HHHHHHHHH
Q 029029 77 ---PMYYRGAAAAIIVYDITNQASFE-RAKKWVQELQAQGNPNMVMALAGN-KADLLDARKVTA-------EEAQAYAQE 144 (200)
Q Consensus 77 ---~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~ 144 (200)
..++..+|++|+|+|++...... .+..++..+... ....|.++++| |+|+... .... +.+..+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 22568899999999998622221 223344433222 12356666666 9998743 1111 224445555
Q ss_pred cCCcE-----EEecCCCCCCHHHHHHHHHHhccccCCCCCCCCceeccCCC
Q 029029 145 NGLFF-----METSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPG 190 (200)
Q Consensus 145 ~~~~~-----~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (200)
.+..+ +++||+++.|++++|++|.+.+....+..++.+.. .+.|.
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~ 224 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLY-SLIQR 224 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH-HHC--
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHH-HHHHH
Confidence 55432 68999999999999999999988776556665533 34443
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=8.5e-23 Score=164.09 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=101.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhhhc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYR 81 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 81 (200)
..+|+++|.+|+|||||+|+|++... ....++.|++...........+..+++|||||++ .+...+..++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999996543 3455667777666666665556789999999985 45566677889
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCH
Q 029029 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNV 160 (200)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 160 (200)
.+|++|+|+|..++.+... .++..+.. ..++|+++|+||+|+.+.... ..++. ..++ .++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence 9999999999988654332 33333332 257899999999998643211 11122 3455 6899999999999
Q ss_pred HHHHHHHHHhcccc
Q 029029 161 NDIFYEIAKRLPRV 174 (200)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (200)
+++++++.+.+.+.
T Consensus 153 ~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 153 GDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999988753
No 142
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.2e-22 Score=153.87 Aligned_cols=165 Identities=16% Similarity=0.196 Sum_probs=94.8
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcccCc-c-------cCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-----
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-Q-------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----- 72 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----- 72 (200)
++...++|+|+|.+|+|||||+|+|++...... + .++.+.+........++....+.+|||||....
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 456689999999999999999999886554322 2 344444444444444555579999999997321
Q ss_pred --ccch-------hhhhc-------------CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 73 --HSLA-------PMYYR-------------GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 73 --~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
.... ..++. .+|+++++++.+..........+++.+.. ++|+++|+||+|+...
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 1111 22222 37799999977652211222334444432 7899999999998643
Q ss_pred CCCC--HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 131 RKVT--AEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
.+.. .+.+.+.....+++++++||.++.++++++++|.+.+...
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~ 205 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLA 205 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcE
Confidence 3221 1334555667889999999999999999999999877543
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=1.9e-21 Score=152.39 Aligned_cols=164 Identities=18% Similarity=0.106 Sum_probs=108.3
Q ss_pred cee-EEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhh
Q 029029 10 NAK-LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMY 79 (200)
Q Consensus 10 ~~~-i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 79 (200)
.++ |+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+.+|||+|... +.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 99999999999999999997654322222222233445566666 5689999999622 22222 24
Q ss_pred hcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC-HHHHHHHHHHc---CCcEEEec
Q 029029 80 YRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEEAQAYAQEN---GLFFMETS 153 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~S 153 (200)
+..+|++++|+|.+++. .......|...+......+.|+++|+||+|+.+..... .+.+..++... +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 67899999999999876 45555666666666555678999999999986532100 11222333444 33689999
Q ss_pred CCCCCCHHHHHHHHHHhccccCC
Q 029029 154 AKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
|+++.|+++++++|.+.+.....
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHhcccCC
Confidence 99999999999999987766543
No 144
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=1.4e-21 Score=161.48 Aligned_cols=162 Identities=18% Similarity=0.233 Sum_probs=112.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCc--ccC-----------cccCcceeeEEEEEEEE-----CCeEEEEEEEeCCCcc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQ--FIE-----------FQESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQE 70 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~--~~~-----------~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~ 70 (200)
+-.+|+|+|+.++|||||+++|+... ... ......|.+.......+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35789999999999999999998622 110 00112233433333222 4557899999999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC---
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL--- 147 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 147 (200)
++...+...+..+|++|+|+|.++..+......|..... .++|+++++||+|+.+.+ .......+....++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999888899999999999999998665555555654442 368999999999986532 23334556566666
Q ss_pred cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 148 FFMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 148 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
.++++||++|.|++++++++.+.+.....
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 48999999999999999999999876543
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=9.9e-22 Score=159.39 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=109.7
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCc----c---cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ----F---IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 79 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 79 (200)
..+.++|+++|+.++|||||+++|++.. . .....+..+.+........+ ...+.+|||||++.+...+...
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHH
Confidence 3568999999999999999999999765 1 11111111111111222223 3689999999999988888888
Q ss_pred hcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHHc----CCcEE
Q 029029 80 YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQEN----GLFFM 150 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~ 150 (200)
+..+|++|+|+|.++ +++.+. +..+.. .++|.++++||+|+.+... ...+++..+++.. +++++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~----l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEH----MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHH----HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHH----HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 999999999999987 444333 333333 3578899999999875321 1123455555555 57899
Q ss_pred EecCCCCCCHHHHHHHHHHhcc
Q 029029 151 ETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
++||++|.|+++++++|.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999999775
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=7.1e-22 Score=160.54 Aligned_cols=153 Identities=23% Similarity=0.199 Sum_probs=101.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcc--cC---------------------------cccCcceeeEEEEEEEECCeE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IE---------------------------FQESTIGAAFFSQTLAVNDAT 58 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 58 (200)
...+||+++|++++|||||+++|++... .. ......|++.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4569999999999999999999986411 00 001112334333344444556
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHH------HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE------RAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~ 132 (200)
..+.||||||++++...+..++..+|++|+|+|++++..+. ...+.+...... ...|+++++||+|+.+.++
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 78999999999999999999999999999999999864432 222223333333 2346999999999976433
Q ss_pred CCHHHH----HHHHHHc-----CCcEEEecCCCCCCHHH
Q 029029 133 VTAEEA----QAYAQEN-----GLFFMETSAKTATNVND 162 (200)
Q Consensus 133 ~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~i~~ 162 (200)
...+++ ..+.... +++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 333333 3333333 45799999999999875
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=3.1e-22 Score=161.10 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=101.1
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchh--------hh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP--------MY 79 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~ 79 (200)
..++|+++|++|+|||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||......... .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3678999999999999999999975432 12222222333333444554 5689999999765443322 35
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029 80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159 (200)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (200)
+..+|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998655433 34444442 36999999999997654432 111111 356899999999999
Q ss_pred HHHHHHHHHHhccccC
Q 029029 160 VNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 160 i~~~~~~l~~~~~~~~ 175 (200)
+++++++|.+.+....
T Consensus 371 i~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 371 IDSLETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999887654
No 148
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.86 E-value=4.8e-22 Score=154.95 Aligned_cols=118 Identities=21% Similarity=0.305 Sum_probs=100.1
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcC
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D 126 (200)
.+.+++||++|++.++..|..++.+++++|+|+|+++ ..++.+...|+..+.... ..+.|+++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999999998 456888888888887642 36799999999999
Q ss_pred ccCCC---------------CCCHHHHHHHHH-----------HcCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 127 LLDAR---------------KVTAEEAQAYAQ-----------ENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 127 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+.+.+ ....+++..++. ..++.+++|||+++.||+++|+++.+.+....
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 85322 356778888876 35677999999999999999999999887654
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=8.8e-21 Score=156.46 Aligned_cols=163 Identities=19% Similarity=0.244 Sum_probs=114.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCc--ccCc-----c------cCcceeeEE----EEEEEE-CCeEEEEEEEeCCCc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF-----Q------ESTIGAAFF----SQTLAV-NDATVKFEIWDTAGQ 69 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~--~~~~-----~------~~~~~~~~~----~~~~~~-~~~~~~~~i~D~~G~ 69 (200)
.+-.+|+++|+.++|||||+++|+... .... . ....|.+.. ...... ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999998631 1100 0 001122221 111111 455789999999999
Q ss_pred cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC--
Q 029029 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-- 147 (200)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 147 (200)
.++...+...+..+|++|+|+|.++..+......|..... .++|+++++||+|+.+.+ ......++....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9998888889999999999999998766666666654432 468999999999986532 22334555555666
Q ss_pred -cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029 148 -FFMETSAKTATNVNDIFYEIAKRLPRVQP 176 (200)
Q Consensus 148 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (200)
.++++||++|.|++++++++.+.+.....
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p~~ 187 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPPKG 187 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence 48999999999999999999999876543
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=3.8e-22 Score=161.13 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=104.2
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC--------ccccccchhh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG--------QERYHSLAPM 78 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~ 78 (200)
+....+|+|+|.+|||||||+|+|++.... ....+.|++...........+..+++||||| ++.+......
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 345679999999999999999999965543 4556677777777777766677899999999 5666677778
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029 79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTA 157 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (200)
++..+|++|+|+|..+..+ ....|+..+... .++|+++|+||+|+.+... ....+. ..+. ..+++||++|
T Consensus 99 ~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTC
T ss_pred hHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccc
Confidence 8899999999999876422 223344333332 5789999999999754321 111111 2233 4679999999
Q ss_pred CCHHHHHHHHHHhcccc
Q 029029 158 TNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 158 ~~i~~~~~~l~~~~~~~ 174 (200)
.|+.++++++.+.+...
T Consensus 170 ~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp TTHHHHHHHHHTTGGGS
T ss_pred cchHHHHHHHHhhcccc
Confidence 99999999999887654
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=3.3e-23 Score=168.89 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=112.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 88 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 88 (200)
+..+|+++|++++|||||+++|.+..+.....+..+.+........+ .+..++||||||++.+...+..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 56889999999999999999999766544333333222222222221 23479999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC-HHHHHHH---HHHc--CCcEEEecCCCCCCHHH
Q 029029 89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEEAQAY---AQEN--GLFFMETSAKTATNVND 162 (200)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 162 (200)
|+|.++...... ..++..+. ..++|+++++||+|+.+.+... ...+..+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt-~e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQT-VESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHH-HHHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHH-HHHHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999998543322 22333333 2468999999999986532211 1111111 1111 24799999999999999
Q ss_pred HHHHHHHhccccCC
Q 029029 163 IFYEIAKRLPRVQP 176 (200)
Q Consensus 163 ~~~~l~~~~~~~~~ 176 (200)
++++|...+....+
T Consensus 158 Lle~I~~l~~~~~~ 171 (537)
T 3izy_P 158 LAEATIALAEMLEL 171 (537)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHhhhcccc
Confidence 99999988765443
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=7.1e-21 Score=153.04 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=104.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE--EEEEEECCeEEEEEEEeCCCccccccc-----------
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQERYHSL----------- 75 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 75 (200)
..++|+|+|++|+|||||+++|++.... ...+..|++.. ...+.+++. .+.+|||+|.......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 4689999999999999999999965431 22333343332 234445554 6899999997432211
Q ss_pred -hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH-HH----HcCCcE
Q 029029 76 -APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY-AQ----ENGLFF 149 (200)
Q Consensus 76 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-~~----~~~~~~ 149 (200)
...++..+|++++++|.+++.+... ..+...+.. .++|+++++||.|+.+.+....++.... .. ....++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 1235678999999999987654433 122222322 4789999999999976544334333222 22 235789
Q ss_pred EEecCCCCCCHHHHHHHHHHhccccC
Q 029029 150 METSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+++||++|.|++++|+.+.+.+....
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999988766543
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=8.8e-21 Score=152.30 Aligned_cols=156 Identities=18% Similarity=0.196 Sum_probs=106.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCccc--C---------------------------cccCcceeeEEEEEEEECCe
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------------------------FQESTIGAAFFSQTLAVNDA 57 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~ 57 (200)
....++|+++|++++|||||+++|++.... . ......|.+.......+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 356799999999999999999999653210 0 00111244444444445555
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCC
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~ 130 (200)
...+.+|||||++++...+...+..+|++|+|+|.++... + .+..+.+..... .++| +++++||+|+...
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCccc
Confidence 6789999999999998888889999999999999987532 1 122333333333 3456 8999999998532
Q ss_pred C--C----CCHHHHHHHHHHcC------CcEEEecCCCCCCHHHHHH
Q 029029 131 R--K----VTAEEAQAYAQENG------LFFMETSAKTATNVNDIFY 165 (200)
Q Consensus 131 ~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 165 (200)
. + ...+++..+++..+ ++++++||++|.|++++++
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 1 11223444444444 5799999999999999654
No 154
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=3.1e-21 Score=150.37 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=93.6
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~ 125 (200)
..+.+++|||+|++.++..+..++++++++|+|+|++ +..++.+...|+..+.... ..+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 7788999999998887643 3679999999999
Q ss_pred CccCCCC--C-------------------CHHHHHHHHHH----------------cCCcEEEecCCCCCCHHHHHHHHH
Q 029029 126 DLLDARK--V-------------------TAEEAQAYAQE----------------NGLFFMETSAKTATNVNDIFYEIA 168 (200)
Q Consensus 126 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (200)
|+.+.+. + ..+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854221 1 14556666432 123468999999999999999999
Q ss_pred Hhcccc
Q 029029 169 KRLPRV 174 (200)
Q Consensus 169 ~~~~~~ 174 (200)
+.+...
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.86 E-value=5.9e-22 Score=157.83 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=115.7
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhC--------cccCc-------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKG--------QFIEF-------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
.....++|+++|++++|||||+++|++. .+... .....|.+.......++.....+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 4456799999999999999999999863 11100 00123333333444444455789999999999
Q ss_pred ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHcC
Q 029029 71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQENG 146 (200)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 146 (200)
++...+...+..+|++|+|+|.++... .+..+++..+... ++| +++++||+|+.+.... ..+++..+++..+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 988888888999999999999987542 3445566555543 567 8899999998742111 1234555666655
Q ss_pred -----CcEEEecCCCCCC------------------HHHHHHHHHHhccc
Q 029029 147 -----LFFMETSAKTATN------------------VNDIFYEIAKRLPR 173 (200)
Q Consensus 147 -----~~~~~~Sa~~~~~------------------i~~~~~~l~~~~~~ 173 (200)
++++++||++|.| +.++++.|.+.+..
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 6899999999987 78888888887754
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=2.2e-21 Score=154.14 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=112.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcc-------cC-------cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQF-------IE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 74 (200)
+.+||+++|+.++|||||+++|++... .. ......|.+.......+......+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 468999999999999999999986311 00 0011223343333444444557899999999999888
Q ss_pred chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCC---CCHHHHHHHHHHcC----
Q 029029 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARK---VTAEEAQAYAQENG---- 146 (200)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 146 (200)
.+...+..+|++|+|+|.++.... +..+++..+.. .++| +++++||+|+.+... ...++++.+++..+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999985322 22333344433 3577 789999999864211 11234566666665
Q ss_pred -CcEEEecCCCCCC----------HHHHHHHHHHhccc
Q 029029 147 -LFFMETSAKTATN----------VNDIFYEIAKRLPR 173 (200)
Q Consensus 147 -~~~~~~Sa~~~~~----------i~~~~~~l~~~~~~ 173 (200)
++++++||++|.| +.++++.|.+.+..
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999764 89999999887764
No 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.4e-21 Score=139.14 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=88.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCc---ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG- 82 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 82 (200)
....++|+|+|++|+|||||+++|.+..+... ..++. ..+.....+.+|||||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS---------AADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce---------eeeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999999999998765331 11111 112245679999999999888888887766
Q ss_pred ---CcEEEEEEeCC-CHHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCcCccCCC
Q 029029 83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~~~ivv~nK~D~~~~~ 131 (200)
+|++|+|+|.+ +++++..+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 889999888888776553 23589999999999997654
No 158
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.7e-22 Score=156.51 Aligned_cols=162 Identities=13% Similarity=0.212 Sum_probs=89.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccC-cc--------cCcceeeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-------ER 71 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 71 (200)
...++|+|+|++|+|||||+++|++..... .. .++.+...........+....+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987643321 11 123333333333344556678999999998 55
Q ss_pred cccchh-------hhhcCC-------------cEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 72 YHSLAP-------MYYRGA-------------AAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 72 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
+..++. .++..+ |+++|+++.. ..++..+. .|+..+ ..++|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 666654 444433 3455555542 22344432 344433 357899999999998765
Q ss_pred CCCCH--HHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 131 RKVTA--EEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 131 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+.+.. +.+..+++.++++++++||+++.+ ++.|.++.+.+....
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 44433 456666777889999999999998 888888777776544
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=1.9e-21 Score=158.91 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=82.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCc------------------ccCc--ccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQ------------------FIEF--QESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 67 (200)
.+..+|+|+|++|+|||||+++|+... .... .....|.+.......+...+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 356899999999999999999997211 0000 00012223223333333345789999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
|+..+...+..++..+|++|+|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 9999999999999999999999999986554443333 33333 4689999999999854
No 160
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=8e-21 Score=146.16 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=98.4
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~ 125 (200)
..+.+++||++|++.++..|..++++++++|+|+|++ +..++.+...|+..+.... ..+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 3478999999999999999999999999999999664 5667888888888876643 3679999999999
Q ss_pred CccCCC----------------CCCHHHHHHHHH----------HcCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 126 DLLDAR----------------KVTAEEAQAYAQ----------ENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 126 D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
|+.+.+ ..+.+++.+++. ..++.+++|||+++.||+.+|..+.+.+....
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 986533 467777877743 34567889999999999999999999887654
No 161
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=2.3e-21 Score=152.30 Aligned_cols=146 Identities=8% Similarity=0.064 Sum_probs=105.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD 91 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 91 (200)
+|+++|++++|||||+++|+ ....+... ....+......+.+|||||++++.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~----~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDI----TMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSS----EEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEe----eEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999997 11122221 222334445679999999999988777788899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEe-CcCccCCCCCCH--HHHHHHHHHc---CCcEEE--ecCCC---CCC
Q 029029 92 ITNQASFERAKKWVQELQAQGNPNMVM-ALAGN-KADLLDARKVTA--EEAQAYAQEN---GLFFME--TSAKT---ATN 159 (200)
Q Consensus 92 ~~~~~s~~~~~~~~~~i~~~~~~~~~~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~ 159 (200)
++ ..+.+..+++..+... ++|. ++++| |+|+ +.+.... ++++.+++.. .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 3455556666665554 4566 88899 9998 4322111 3444444443 368999 99999 999
Q ss_pred HHHHHHHHHHhccc
Q 029029 160 VNDIFYEIAKRLPR 173 (200)
Q Consensus 160 i~~~~~~l~~~~~~ 173 (200)
++++++.|.+.+..
T Consensus 167 i~~L~~~l~~~~~~ 180 (370)
T 2elf_A 167 VDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 99999999988754
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=2.2e-20 Score=154.35 Aligned_cols=159 Identities=20% Similarity=0.227 Sum_probs=107.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcc----cCcceeeEEEEEE------------EECCeEEEEEEEeCCCccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTL------------AVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~ 71 (200)
.+..+|+++|++++|||||+++|++....... .++.+..+..... ..+.....++||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999965443211 1222222211100 0001122599999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC----H--------H
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT----A--------E 136 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~----~--------~ 136 (200)
+...+...+..+|++|+|+|+++ +++++.+. .+.. .++|+++++||+|+....... . +
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99998888999999999999998 66655433 2222 468999999999986421110 0 0
Q ss_pred -----------HHHHHHHHcC---------------CcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 137 -----------EAQAYAQENG---------------LFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 137 -----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
+........+ ++++++||++|.|+++++++|...+..
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1111111222 379999999999999999999987653
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=1.2e-21 Score=157.27 Aligned_cols=154 Identities=21% Similarity=0.239 Sum_probs=103.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhC--cccCcc---------------------------cCcceeeEEEEEEEECCeE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQ---------------------------ESTIGAAFFSQTLAVNDAT 58 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 58 (200)
...++|+++|+.++|||||+++|++. .+.... ....|.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45789999999999999999999864 221100 0012233333333344455
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHH-------HHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-------VQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-------~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
..+.+|||||++++...+..++..+|++|+|+|.++ .+|+....| +...... .-.++++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 789999999999998888889999999999999998 566644332 2222222 123589999999987521
Q ss_pred ------CCCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHH
Q 029029 132 ------KVTAEEAQAYAQENG-----LFFMETSAKTATNVNDIF 164 (200)
Q Consensus 132 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 164 (200)
....++++.+++..+ ++++++||++|.|+.+++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 111344666666665 679999999999998544
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=1.3e-20 Score=151.32 Aligned_cols=153 Identities=22% Similarity=0.184 Sum_probs=103.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcc--cCcc----------cCc-------------------ceeeEEEEEEEECC
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IEFQ----------EST-------------------IGAAFFSQTLAVND 56 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~~~----------~~~-------------------~~~~~~~~~~~~~~ 56 (200)
...++|+++|+.++|||||+++|++... .... ..+ .|.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4568999999999999999999986531 0000 001 11121112222333
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC---
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--- 133 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--- 133 (200)
....+.+|||||++++...+..++..+|++|+|+|.++.. +.+..+++..+... ...|+++++||+|+.+....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence 4567999999999999888888899999999999998853 23334455444443 22369999999998653211
Q ss_pred -CHHHHHHHHHHcC-----CcEEEecCCCCCCHHHH
Q 029029 134 -TAEEAQAYAQENG-----LFFMETSAKTATNVNDI 163 (200)
Q Consensus 134 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 163 (200)
..++...+++..+ ++++++||++|.|++++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1234556666676 67999999999999874
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.3e-21 Score=159.38 Aligned_cols=155 Identities=24% Similarity=0.221 Sum_probs=103.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcc-----------------------------cCcceeeEEEEEEEECCe
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------------------------ESTIGAAFFSQTLAVNDA 57 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 57 (200)
....+||+++|++++|||||+++|++....-.. ....|++.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356899999999999999999999865221100 001233333333333445
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
...++||||||++.+...+..++..+|++|+|+|++++.. + ......+...... ...|+++|+||+|+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchh
Confidence 5689999999999998888888999999999999987521 0 1222222222222 224599999999987632
Q ss_pred CCCH----HHHHHHHHHc-----CCcEEEecCCCCCCHHHH
Q 029029 132 KVTA----EEAQAYAQEN-----GLFFMETSAKTATNVNDI 163 (200)
Q Consensus 132 ~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 163 (200)
.... +++..++... +++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222 2233444443 358999999999999865
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=8.3e-21 Score=153.20 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=103.4
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCc--ccCc---------------------------ccCcceeeEEEEEEEECC
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF---------------------------QESTIGAAFFSQTLAVND 56 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~ 56 (200)
.....++|+++|++++|||||+++|++.. +... .....|.+.......+..
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 34568999999999999999999998641 1100 000112222222223334
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEeCcCccC
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNMV-MALAGNKADLLD 129 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~ 129 (200)
....+.+|||||++++...+..++..+|++|+|+|.++.. +|+ +..+++..... .++| +++++||+|+.+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 4578999999999998888888899999999999998753 121 23333333333 2454 899999999873
Q ss_pred CCC----CCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHH
Q 029029 130 ARK----VTAEEAQAYAQENG-----LFFMETSAKTATNVNDI 163 (200)
Q Consensus 130 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 163 (200)
... ...+++..+++..+ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 11234555555555 68999999999998743
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=2.2e-20 Score=161.57 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=113.0
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc-------cC-------cccCcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF-------IE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
.....++|+++|++++|||||+++|++... .. ......|.+.......++.....+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 345679999999999999999999986311 00 0112333333333334444567899999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHcC-
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQENG- 146 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~- 146 (200)
+...+...+..+|++|+|+|.++... .+..+++..+... ++| +++++||+|+.+.... ..+++..+++..+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 88888888999999999999987532 2334455544443 567 7899999998752211 1234566666665
Q ss_pred ----CcEEEecCCCC--------CCHHHHHHHHHHhccc
Q 029029 147 ----LFFMETSAKTA--------TNVNDIFYEIAKRLPR 173 (200)
Q Consensus 147 ----~~~~~~Sa~~~--------~~i~~~~~~l~~~~~~ 173 (200)
++++++||++| .|+.++++.|.+.+..
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 68999999999 4689999999887753
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=2.2e-21 Score=157.02 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=104.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 87 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 87 (200)
.+..+|+++|+.++|||||+++|.+..+.....+..+.+... ..+...+..+.||||||++.+...+...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~--~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA--YHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSC--CCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEE--EEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 467899999999999999999998755433222111111111 122222357899999999999999888899999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC--CCCHH--HHHHHHHHc--CCcEEEecCCCCC
Q 029029 88 IVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR--KVTAE--EAQAYAQEN--GLFFMETSAKTAT 158 (200)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~Sa~~~~ 158 (200)
+|+|.++ +++.+. +..... .+.|+++++||+|+.+.+ .+..+ ....+...+ .++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~----l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEA----IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHH----HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHH----HHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 9999987 333322 233332 468899999999986421 11100 000011122 2689999999999
Q ss_pred CHHHHHHHHHHh
Q 029029 159 NVNDIFYEIAKR 170 (200)
Q Consensus 159 ~i~~~~~~l~~~ 170 (200)
|+++++++|...
T Consensus 153 gI~eLle~I~~~ 164 (501)
T 1zo1_I 153 GIDELLDAILLQ 164 (501)
T ss_dssp TCTTHHHHTTTT
T ss_pred Ccchhhhhhhhh
Confidence 999999998764
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=5e-20 Score=133.93 Aligned_cols=157 Identities=15% Similarity=0.176 Sum_probs=99.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccchh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAP 77 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 77 (200)
....+|+++|++|||||||+++|++..+.....++.|.+........++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3467899999999999999999986654444556666555433333332 588999999742 222223
Q ss_pred hhh---cCCcEEEEEEeCCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHHcC--Cc
Q 029029 78 MYY---RGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQENG--LF 148 (200)
Q Consensus 78 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 148 (200)
.++ ..++++++++|++++.+... +..|+ . . .+.|++++.||+|+....+ ...+.++.++...+ +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~-~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V-D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H-H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---H-H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 344 47899999999987544322 22232 2 2 4678999999999865321 12344555555554 46
Q ss_pred EEEecCCCCCCHHHHHHHHHHhccc
Q 029029 149 FMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
++++||+++.++++++++|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999987654
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=5e-21 Score=154.84 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=89.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhC--cccCc---------------------c------cCcceeeEEEEEEEECCeE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF---------------------Q------ESTIGAAFFSQTLAVNDAT 58 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~---------------------~------~~~~~~~~~~~~~~~~~~~ 58 (200)
...++|+++|+.++|||||+++|+.. .+... . ....|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999752 11100 0 0011222222111222234
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCC
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNMV-MALAGNKADLLDAR 131 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~ 131 (200)
..+.+|||||+++|...+...+..+|++|+|+|.++.. +|+ +..+.+..... .++| +++++||+|+.+..
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTCS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCEEEEEEECccCCCcc
Confidence 68999999999999888888899999999999999852 222 12222222222 4566 99999999985421
Q ss_pred ------CCCHHHHHHHHHHc-------CCcEEEecCCCCCCHHHHH
Q 029029 132 ------KVTAEEAQAYAQEN-------GLFFMETSAKTATNVNDIF 164 (200)
Q Consensus 132 ------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~ 164 (200)
....+++..+++.. +++++++||++|.|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 01123455666555 4569999999999998754
No 171
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=4e-20 Score=142.76 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=95.5
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA 125 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~ 125 (200)
..+.+++||++|++.++..|..++++++++|+|+|++ +..++.+...|+..+.... ..+.|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 6778888888888887653 3689999999999
Q ss_pred CccCCC---------------CCCHHHHHHHHHHc---------------------------CCcEEEecCCCCCCHHHH
Q 029029 126 DLLDAR---------------KVTAEEAQAYAQEN---------------------------GLFFMETSAKTATNVNDI 163 (200)
Q Consensus 126 D~~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~Sa~~~~~i~~~ 163 (200)
|+.+.+ ....+++.+++... .+.+++|||+++.+|+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 985421 12455665554332 366889999999999999
Q ss_pred HHHHHHhccc
Q 029029 164 FYEIAKRLPR 173 (200)
Q Consensus 164 ~~~l~~~~~~ 173 (200)
|..+.+.+..
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=2.3e-20 Score=142.90 Aligned_cols=161 Identities=18% Similarity=0.163 Sum_probs=100.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcc----cCccee----------------------eEE-------------
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGA----------------------AFF------------- 48 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~----------------------~~~------------- 48 (200)
....+|+|+|.+|+|||||+++|++..+.+.. ...++. +..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999987653211 111110 000
Q ss_pred ----------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhhhcCCcEEE-EEEeCCCHHHHHHHHH
Q 029029 49 ----------SQTLAVN-DATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAI-IVYDITNQASFERAKK 103 (200)
Q Consensus 49 ----------~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 103 (200)
.....+. .....+.+|||||... +......++..++.+| +|+|.++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000000 0125799999999642 3345556777888666 7999987544333223
Q ss_pred HHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH--cC-CcEEEecCCCCCCHHHHHHHHHHhc
Q 029029 104 WVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE--NG-LFFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 104 ~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
++..+. ..+.|+++|+||+|+.+......+.+...... .+ .+++++||++|.|++++++++.+..
T Consensus 184 ~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 444332 35789999999999976543222222211001 12 3577899999999999999988743
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=3.2e-19 Score=134.22 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=83.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc------
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR------ 81 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------ 81 (200)
...++|+++|.+|+|||||+++|++..... ..+..+++.......+...+..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 467999999999999999999999766422 2222222222222222223458999999999877665555443
Q ss_pred ---CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCC--CCeEEEEEeCcCccCCCCCCH
Q 029029 82 ---GAAAAIIVYDITNQASFERA-KKWVQELQAQGNP--NMVMALAGNKADLLDARKVTA 135 (200)
Q Consensus 82 ---~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~--~~~~ivv~nK~D~~~~~~~~~ 135 (200)
.+|++++|++++... +... ..|++.+...... ..|+++|+||+|+...+....
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 789999999987643 3332 4666666554222 348999999999865444443
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=1.5e-20 Score=155.72 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=90.3
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccC--c---------------------------ccCcceeeEEEEEEEECCe
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE--F---------------------------QESTIGAAFFSQTLAVNDA 57 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~ 57 (200)
....++|+++|++++|||||+++|++....- . .....|++.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3457899999999999999999997421100 0 0012234444444444445
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH---HH---HHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCC
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SF---ERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~ 130 (200)
...+.||||||++.+...+...+..+|++|+|+|.+++. .+ ......+..+... ++| +++|+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccc
Confidence 678999999999999888888899999999999998532 11 1122223333333 455 8999999998652
Q ss_pred CCCCH----HHHHHHH-HHcCC-----cEEEecCCCCCCHH--------------HHHHHHHHhcc
Q 029029 131 RKVTA----EEAQAYA-QENGL-----FFMETSAKTATNVN--------------DIFYEIAKRLP 172 (200)
Q Consensus 131 ~~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~--------------~~~~~l~~~~~ 172 (200)
..... .++..+. +..++ +++++||++|.|+. .+++.|.+.+.
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 21111 2233333 33344 69999999999998 68888776554
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=1.2e-18 Score=146.22 Aligned_cols=117 Identities=11% Similarity=0.057 Sum_probs=82.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCccc-------------C---cceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-------------S---TIGAAFFSQTLAVNDATVKFEIWDTAGQER 71 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 71 (200)
.+..+|+|+|+.|+|||||+++|++........ + ..+.++......+....+.+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 446789999999999999999998532210000 0 112333333333333457899999999999
Q ss_pred cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
+...+..++..+|++++|+|..+.... ....++..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHH---ccCCEEEEecCCchh
Confidence 888888899999999999998764322 22344444444 368999999999986
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=2.1e-18 Score=136.91 Aligned_cols=162 Identities=19% Similarity=0.151 Sum_probs=108.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhh---hhcCC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPM---YYRGA 83 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~ 83 (200)
..|+|+|++|||||||++.|.+........+..+.......+..++ ...+.+||+||... ...+... .+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999986532111111111111122222222 35689999999742 2222222 24579
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029 84 AAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161 (200)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (200)
+.++.++|++ ...+..+..+.+++..... ...|.++++||+|+... ...+.+....+..+.+++.+||+++.|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999997 4456666666666555421 35789999999998653 22344455555567899999999999999
Q ss_pred HHHHHHHHhccccCC
Q 029029 162 DIFYEIAKRLPRVQP 176 (200)
Q Consensus 162 ~~~~~l~~~~~~~~~ 176 (200)
+++++|.+.+.....
T Consensus 314 eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 314 ALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999887654
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=2.6e-18 Score=144.68 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=82.5
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCccc--C--cc------------cCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E--FQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 69 (200)
...+..+|+|+|+.|+|||||+++|+..... . .. ....+.+.......+....+.+.+|||||+
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 3466899999999999999999999842110 0 00 001122222222222223578999999999
Q ss_pred cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
..+...+..++..+|++|+|+|.++..++.....|.. +.. .++|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9988888889999999999999998766555444433 333 3689999999999864
No 178
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=1e-19 Score=139.37 Aligned_cols=164 Identities=15% Similarity=0.206 Sum_probs=86.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhC-cccCcc--------cCcceeeEEEEEEEECCeEEEEEEEeCCCc-------c
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKG-QFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-------E 70 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~ 70 (200)
....++|+|+|++|+|||||+++|.+. .++... .++.............+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 356789999999999999999998864 332221 111111111122222344568999999997 4
Q ss_pred ccccchh-------hhhcC-------------CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 71 RYHSLAP-------MYYRG-------------AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 71 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
.+..... .++.. ++++++..+++. .+++... .+.+.... ...++++|+||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 4444443 33222 344555555432 1122222 12233322 45789999999998764
Q ss_pred CCC--CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 131 RKV--TAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
+++ ..+++..+++.++++++++||+++ +++++|.++.+.+....
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 332 235678888889999999999999 99999999999886543
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=6.6e-18 Score=138.19 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=79.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcc-cCc-------------------ccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 67 (200)
.+..+|+|+|++|+|||||+++|+.... ... .....|.+.......+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4578999999999999999999986311 100 00112222222222333345789999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
|+..+...+..++..+|++|+|+|.++.... ....++... ...++|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 9999888888899999999999999875321 122222322 235789999999999864
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=2.1e-18 Score=130.32 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=83.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhh-------h-
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM-------Y- 79 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~- 79 (200)
...++|+++|.+|+|||||+++|++..... ..+..+++..............+.+|||||...+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 357999999999999999999999765421 2233333333333333334568999999998765433221 1
Q ss_pred -hcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCC--CCeEEEEEeCcCccCCCCCCH
Q 029029 80 -YRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNP--NMVMALAGNKADLLDARKVTA 135 (200)
Q Consensus 80 -~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~--~~~~ivv~nK~D~~~~~~~~~ 135 (200)
...+|++++|+|++.. ++... ..|+..+...... ..|+++|+||+|+........
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 2469999999998653 23332 4666666554222 268999999999876544444
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=3e-19 Score=140.18 Aligned_cols=106 Identities=12% Similarity=0.096 Sum_probs=76.0
Q ss_pred EEEEEeCCCcccc-------------ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029 60 KFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (200)
Q Consensus 60 ~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D 126 (200)
.+++|||||...+ ......++..+|++|+++|..+..... ..|+..+......+.|+++|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5899999998765 455667889999999999876432221 2444555554456789999999999
Q ss_pred ccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167 (200)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (200)
+.+......+.+.......+.+|+++++.++.++++.+...
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 98655555544544445567789999999988887765543
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.75 E-value=6.8e-18 Score=142.28 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=77.3
Q ss_pred EEEEEeCCCccc---cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029 60 KFEIWDTAGQER---YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (200)
Q Consensus 60 ~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 136 (200)
.+.+|||||... .......++..+|++|+|+|.+++.+......|...+.. .+.|+++|+||+|+......+.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 599999999654 334555678999999999999987666665555444322 36789999999998654311111
Q ss_pred ----------HHHH-----HHHH--------cCCcEEEecCC--------------CCCCHHHHHHHHHHhccc
Q 029029 137 ----------EAQA-----YAQE--------NGLFFMETSAK--------------TATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 137 ----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~i~~~~~~l~~~~~~ 173 (200)
.+.. +... ...+++++||+ ++.|+++++.+|.+.+..
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 1111 12369999999 999999999999887654
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=137.07 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=82.7
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcc--------cCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-----
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH----- 73 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----- 73 (200)
....++|+|+|++|+|||||++.|++....... .++.+.......+...+....+++||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 355788999999999999999999976542111 1111111111122223334579999999976431
Q ss_pred --c------------------chhhhhcCCcEEEEEEeCCCH-HHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029 74 --S------------------LAPMYYRGAAAAIIVYDITNQ-ASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDAR 131 (200)
Q Consensus 74 --~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~ 131 (200)
. +...++.++++.+++|+.... .+++.. ..|+..+. .++|+|+|+||+|+...+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 1 112234455544444443321 233333 25665553 368999999999987654
Q ss_pred CCCH--HHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 132 KVTA--EEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
++.. ..+...+..++++++++|++++.++.++|..+.+.+..
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 4443 56777788889999999999999999999888876654
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=1.1e-17 Score=141.04 Aligned_cols=125 Identities=17% Similarity=0.163 Sum_probs=84.5
Q ss_pred CCCCCCCccceeEEEECCCCCCHHHHHHHHHhC--cccCc--c------cC------cceeeEEEEEEEECCeEEEEEEE
Q 029029 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF--Q------ES------TIGAAFFSQTLAVNDATVKFEIW 64 (200)
Q Consensus 1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~--~------~~------~~~~~~~~~~~~~~~~~~~~~i~ 64 (200)
|+......+..+|+|+|++|+|||||+++|+.. ..... . .. ..+.+.......+......+.+|
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~li 80 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII 80 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEE
Confidence 455555567899999999999999999999852 21100 0 00 11122211122222234789999
Q ss_pred eCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 65 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
||||+..+...+..++..+|++|+|+|.++..+......|. .+.. .++|+++|+||+|+..
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 99999998888888999999999999999865555444443 3333 3689999999999864
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.74 E-value=5.1e-18 Score=130.80 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=70.5
Q ss_pred EEEEEEeCCCccc-------------cccchhhhhcCCcEEEEEEeCCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeC
Q 029029 59 VKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNK 124 (200)
Q Consensus 59 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~ivv~nK 124 (200)
..+.+|||||... +......++..+|++++|+|..+.... .....++..+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4699999999753 334455678899999999997432211 1111222222 2357899999999
Q ss_pred cCccCCCCCCHHHHHHHHHHcCCcEEEecCC---C---CCCHHHHHHHHHHhcccc
Q 029029 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAK---T---ATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~l~~~~~~~ 174 (200)
+|+.+......+.+.......+..++++++. + +.|+.+++..+.+.+...
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 9997654322222221111122567777654 4 789999999988887654
No 186
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.6e-18 Score=132.78 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=109.4
Q ss_pred HHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH-HHHHHH
Q 029029 25 SLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAK 102 (200)
Q Consensus 25 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 102 (200)
+|+.++..+.+. ..+.++.|..+. .....++ .+++||+ +++++.++..+++++|++|+|+|++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577777777777 778888884443 3322222 7999999 8899999999999999999999999987 688889
Q ss_pred HHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 103 KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 103 ~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
.|+..+.. .++|+++|+||+|+.+.+. .++...+++.++ .+++++||++|.|++++|.++...+.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv 172 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKIS 172 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEE
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeE
Confidence 99987765 4789999999999975433 245667777777 89999999999999999998765443
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=1.1e-16 Score=135.09 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=82.3
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCc--ccCc--c------------cCcceeeEEEEEEEE-------CCeEEEEE
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF--Q------------ESTIGAAFFSQTLAV-------NDATVKFE 62 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~--~~~~--~------------~~~~~~~~~~~~~~~-------~~~~~~~~ 62 (200)
...+..+|+|+|+.|+|||||+++|+... .... . ....+.+.......+ ++..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 44567899999999999999999997531 1100 0 001122222222222 22348899
Q ss_pred EEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 63 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+|||||+.++...+..++..+|++|+|+|.++.........| ..... .++|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 999999999888888899999999999999986444333333 33322 4689999999999854
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=8.3e-19 Score=138.87 Aligned_cols=83 Identities=20% Similarity=0.107 Sum_probs=46.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEE----EE-------------------EECC-eEEEEEEEeC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ----TL-------------------AVND-ATVKFEIWDT 66 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~----~~-------------------~~~~-~~~~~~i~D~ 66 (200)
++|+|+|.+|+|||||+|+|++.... ....++++.... .. .+++ ....+++|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~--~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVE--IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 58999999999999999999976522 111111111111 11 1122 2578999999
Q ss_pred CCccc----cccchh---hhhcCCcEEEEEEeCCCH
Q 029029 67 AGQER----YHSLAP---MYYRGAAAAIIVYDITNQ 95 (200)
Q Consensus 67 ~G~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 95 (200)
||... ...+.. .+++.+|++++|+|.++.
T Consensus 79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99753 222222 346899999999999874
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.72 E-value=1.1e-17 Score=130.76 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=91.2
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcC
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKAD 126 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D 126 (200)
.+.+++|||+|++.++..|..++.+++++|+|+|+++ ..++.+...|+..+.... ..+.|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 678999888998887642 36799999999999
Q ss_pred ccCCC----------------CCCHHHHHHHHH-----------HcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029 127 LLDAR----------------KVTAEEAQAYAQ-----------ENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 127 ~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (200)
+.+.+ ..+.+++..++. ..++.+++|||+++.||+++|+++.+.+...
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 86322 256777777652 3457789999999999999999999988654
No 190
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.71 E-value=3.7e-17 Score=128.94 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=97.7
Q ss_pred EEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHHhC-CCCCeEE
Q 029029 51 TLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMA 119 (200)
Q Consensus 51 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~~~i 119 (200)
.+.++ .+.+++|||+|++.++..|..++.+++++|+|||+++ ..++.++..|+..+.... ..+.|++
T Consensus 211 ~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 34444 3889999999999999999999999999999999998 889999999999988753 4689999
Q ss_pred EEEeCcCccCCCC---C---------------------------CHHHHHHHH-----HH--------cCCcEEEecCCC
Q 029029 120 LAGNKADLLDARK---V---------------------------TAEEAQAYA-----QE--------NGLFFMETSAKT 156 (200)
Q Consensus 120 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~ 156 (200)
+|+||+|+.+.+. . ..+++..++ .. ..+.+++|||++
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d 368 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD 368 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence 9999999854221 1 134455553 22 245678999999
Q ss_pred CCCHHHHHHHHHHhcccc
Q 029029 157 ATNVNDIFYEIAKRLPRV 174 (200)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (200)
+.||+++|.++.+.+...
T Consensus 369 ~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 369 TENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999998877654
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=6.5e-17 Score=118.41 Aligned_cols=156 Identities=14% Similarity=0.126 Sum_probs=94.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccC----ccee----------eEEEEEEEE----------------CCeE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES----TIGA----------AFFSQTLAV----------------NDAT 58 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~----~~~~----------~~~~~~~~~----------------~~~~ 58 (200)
...+|+|+|.+|+|||||+++|+.......... ..+. ......... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 356899999999999999999986422110000 0000 000011100 1123
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA 138 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 138 (200)
..+.+|||+|+.... ..+....+.+++|+|..+... ....+... .+.|.++++||+|+.+......+..
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 568899999851110 011125788999999876432 11111111 1367899999999865433456666
Q ss_pred HHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 139 QAYAQEN--GLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 139 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
...+... +.+++++||++|.|+++++++|.+.+....
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 6666554 468999999999999999999999876543
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.66 E-value=5.1e-17 Score=127.20 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=70.2
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--H
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--A 135 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~ 135 (200)
++.+.||||||... .....+..+|++++|+|....+....+. . .....|.++|+||+|+.+..... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~-~~~~~p~ivVlNK~Dl~~~~~~~~~~ 239 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K-GVLELADIVVVNKADGEHHKEARLAA 239 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T-TSGGGCSEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H-hHhhcCCEEEEECCCCcChhHHHHHH
Confidence 46799999999533 2334568999999999987654332211 1 11245899999999985432111 1
Q ss_pred HHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 136 EEAQAYAQE-------NGLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
.+....... ++.+++++||++|.|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111111111 25789999999999999999999998765
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=6.2e-15 Score=114.83 Aligned_cols=162 Identities=15% Similarity=0.030 Sum_probs=97.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYH-- 73 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-- 73 (200)
++|+++|.+|+|||||+|+|++........+..+.........+++. +..+++|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999986532111111111111112223321 2579999999986532
Q ss_pred --cc---hhhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHH-------------------------------
Q 029029 74 --SL---APMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQE------------------------------- 107 (200)
Q Consensus 74 --~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------- 107 (200)
.+ ...+++.+|++++|+|.++. +++..+..+..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 12 22357899999999999751 122221110000
Q ss_pred ---------HHH-------------------h-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC--
Q 029029 108 ---------LQA-------------------Q-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT-- 156 (200)
Q Consensus 108 ---------i~~-------------------~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-- 156 (200)
+.. . ....+|+++++|+.|..-......+.++.++..++.+++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~ 242 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIES 242 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHH
Confidence 110 0 123599999999998532112234667778888899999999653
Q ss_pred --------------------CCCHHHHHHHHHHhcc
Q 029029 157 --------------------ATNVNDIFYEIAKRLP 172 (200)
Q Consensus 157 --------------------~~~i~~~~~~l~~~~~ 172 (200)
..|++.+.....+.+.
T Consensus 243 el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~ 278 (363)
T 1jal_A 243 EIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278 (363)
T ss_dssp HGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhC
Confidence 3677777777666554
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.64 E-value=2e-15 Score=123.99 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=80.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCccc--------------------CcccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 67 (200)
.+..+|+|+|+.++|||||..+|+...-. ......-|.+.......+...++.+.++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 35688999999999999999999742110 0001111222323333333455789999999
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
|+.+|..-....++-+|++|+|+|..+.-..... ..++.... .++|.++++||+|...
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCCEEEEEECTTSCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH---hCCceEEEEecccchh
Confidence 9999999999999999999999999875332222 33344444 3689999999999754
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=7.5e-17 Score=126.20 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=91.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCccc----CcceeeEE------------------------------------
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFF------------------------------------ 48 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~------------------------------------ 48 (200)
...+|+|+|.+|+|||||+++|++..+.+... ..++....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999766532111 11110000
Q ss_pred ---------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhhhcCCc-EEEEEEeCCCHHHHHHHHHH
Q 029029 49 ---------SQTLAVN-DATVKFEIWDTAGQER-------------YHSLAPMYYRGAA-AAIIVYDITNQASFERAKKW 104 (200)
Q Consensus 49 ---------~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 104 (200)
.....+. .....+.+|||||... +......++..++ +++++.|.+...... .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence 0000000 1135699999999642 3334555665555 555566655422211 12
Q ss_pred HHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH--HHHcC-CcEEEecCCCCCCHHHHHHHHHH
Q 029029 105 VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY--AQENG-LFFMETSAKTATNVNDIFYEIAK 169 (200)
Q Consensus 105 ~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~ 169 (200)
+..+......+.|+++|+||+|+.+......+..... ....+ .+++.+||+++.|++++++++.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2223333345789999999999975433222211100 00012 24678999999999999999877
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.61 E-value=1.8e-15 Score=111.08 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=89.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE------------EEEEEEC-Ce------------------
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF------------SQTLAVN-DA------------------ 57 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 57 (200)
+..+|+|+|.+|||||||+++|+...+.....++.+.++. .....++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999976543322222222111 0111111 10
Q ss_pred -EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029 58 -TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (200)
Q Consensus 58 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 136 (200)
...+.++|++|.-... ..+-...+..+.++|......... ..... ...|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 1135555555521100 011123345566666432111000 00011 13678999999998654445666
Q ss_pred HHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 137 EAQAYAQEN--GLFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
....+++.. +.+++++||++|.|++++|+++.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 677776654 5789999999999999999999987754
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=2.8e-15 Score=128.75 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=84.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccC----------------cc--cCcceeeEEEEEEE------------ECC
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE----------------FQ--ESTIGAAFFSQTLA------------VND 56 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------------~~--~~~~~~~~~~~~~~------------~~~ 56 (200)
.....||+|+|+.++|||||+++|+...... .. ..++.......... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4556899999999999999999998642100 00 01111111122222 234
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
..+.+++|||||+.++...+..+++.+|++|+|+|.++..++.....|.... . .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 5789999999999999999999999999999999999876666555454332 2 468999999999986
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.59 E-value=3.6e-15 Score=122.62 Aligned_cols=120 Identities=13% Similarity=0.199 Sum_probs=79.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECC------e----------------E------
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVND------A----------------T------ 58 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~------~----------------~------ 58 (200)
....+|+|+|.+|+|||||+|+|++..... ...+..+++........+. . +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 457899999999999999999999776531 1112221111111000000 0 0
Q ss_pred -----------EEEEEEeCCCccc-----------cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC
Q 029029 59 -----------VKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM 116 (200)
Q Consensus 59 -----------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 116 (200)
..+.+|||||... +......++..+|++|+|+|.++.........++..+.. .+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence 2589999999764 334555678899999999999875444455566655533 457
Q ss_pred eEEEEEeCcCccCC
Q 029029 117 VMALAGNKADLLDA 130 (200)
Q Consensus 117 ~~ivv~nK~D~~~~ 130 (200)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 89999999998653
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=113.61 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=63.2
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE 137 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~ 137 (200)
++.+.++||+|.... .......+|++++|+|.+.+.....+.. .+ ...|.++|+||+|+.+.... ...
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI 233 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence 356899999996422 2345678999999999987533221111 11 24578899999998532110 001
Q ss_pred HHHHHH----------HcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 138 AQAYAQ----------ENGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 138 ~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
...+.. .+..+++.+||++|.|+++++++|.+.+.
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 122211 12457899999999999999999988764
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.57 E-value=3.1e-14 Score=111.40 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=52.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccC-c-----ccCcceeeEEEEEEEECC-------------------eEEEEEEEe
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-F-----QESTIGAAFFSQTLAVND-------------------ATVKFEIWD 65 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~-----~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D 65 (200)
++|+++|.+|+|||||+++|++..... . ..+..+. ..+++ .+..+++||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~------~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV------VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE------EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee------EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 689999999999999999999754211 1 1122221 11211 245799999
Q ss_pred CCCccccc----cch---hhhhcCCcEEEEEEeCCC
Q 029029 66 TAGQERYH----SLA---PMYYRGAAAAIIVYDITN 94 (200)
Q Consensus 66 ~~G~~~~~----~~~---~~~~~~~d~~i~v~d~~~ 94 (200)
|||..... .+. ...++.+|++++|+|.++
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 99986532 122 234789999999999975
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.54 E-value=4.6e-15 Score=115.49 Aligned_cols=104 Identities=15% Similarity=0.043 Sum_probs=65.3
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA-- 135 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~-- 135 (200)
++.+.+|||||..... ......+|++++|+|.+.......+.. .. .+.|.++|+||+|+.+......
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 3579999999965433 224689999999999976533211111 11 1357899999999864311110
Q ss_pred HHHHHHHHHc-------CCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 136 EEAQAYAQEN-------GLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 136 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
++........ ..+++++||++|.|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122222221 356899999999999999999998765
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.54 E-value=7.8e-14 Score=104.54 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=68.0
Q ss_pred EEEEEEeCCCccccccchh------hhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029 59 VKFEIWDTAGQERYHSLAP------MYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~ 129 (200)
+.+.+|||||......... ..+.. +++|+++|... +..+.....+...... ..+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5799999999875432211 13455 88888998753 2222222111111111 13578999999999865
Q ss_pred CCCCCHHHHHHH----------------------------HHHcC--CcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029 130 ARKVTAEEAQAY----------------------------AQENG--LFFMETSAKTATNVNDIFYEIAKRLPR 173 (200)
Q Consensus 130 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (200)
.... +++..+ +...+ .+++++||+++.|+++++++|.+.+..
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 3211 111111 12323 479999999999999999999887653
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.54 E-value=5.5e-14 Score=110.07 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=95.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYY 80 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~ 80 (200)
....+|+++|.|++|||||+|+|++.... ....++++..+....+...+.+++++||||..... ...-..+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 44679999999999999999999965432 33344444445444444445689999999963211 1112245
Q ss_pred cCCcEEEEEEeCCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeCcCccC--------CCCCCHHHHHHHHHHcCCcEEE
Q 029029 81 RGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLD--------ARKVTAEEAQAYAQENGLFFME 151 (200)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~ 151 (200)
+.+|++++|+|.++|... +.+...+..... .....|.++++||.|... ......++.+.+...+.+..-+
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~-~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGI-RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTE-EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhH-hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 789999999999987432 222222222211 124567888999999643 1235566677766666653333
Q ss_pred ecCCCCCCHHHHHHH
Q 029029 152 TSAKTATNVNDIFYE 166 (200)
Q Consensus 152 ~Sa~~~~~i~~~~~~ 166 (200)
+....+...+++.+.
T Consensus 227 v~~~~nv~eddl~d~ 241 (376)
T 4a9a_A 227 IAFRCDATVDDLIDV 241 (376)
T ss_dssp EEECSCCCHHHHHHH
T ss_pred eeecccCCHHHHHHH
Confidence 333344555555543
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=5.6e-13 Score=112.87 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=78.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCccc--------C--------cccCcceeeEEEEE--EEEC-----CeEEEEEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------E--------FQESTIGAAFFSQT--LAVN-----DATVKFEIW 64 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------~--------~~~~~~~~~~~~~~--~~~~-----~~~~~~~i~ 64 (200)
.+-.+|+|+|+.++|||||..+|+...-. . .....-|.+..... ..+. ..++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 45578999999999999999999742210 0 00111122332222 2222 246899999
Q ss_pred eCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 65 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
||||+-+|.......++-+|++|+|+|..+.-.... ...++....+ ++|.++++||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH---TCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEcccccc
Confidence 999999999999999999999999999987532222 2333334443 68899999999974
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=8.4e-15 Score=122.50 Aligned_cols=162 Identities=16% Similarity=0.166 Sum_probs=108.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcc--cCc--------------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQF--IEF--------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 74 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 74 (200)
.||+|+|+.++|||||..+|+...- ... ....-|.+.......+...++.++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999974211 100 000113344444444555667899999999999999
Q ss_pred chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC---------------------
Q 029029 75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--------------------- 133 (200)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--------------------- 133 (200)
.....++-+|++|+|+|..+.-... ....++..... ++|.++++||+|....+..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 9999999999999999998742222 23334444444 5788999999997432100
Q ss_pred -----------CHHH-----------HHHH-------------------HHHcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 134 -----------TAEE-----------AQAY-------------------AQENGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 134 -----------~~~~-----------~~~~-------------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
..+. ...+ ....-.|++..||.++.|++.+++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence 0000 0000 1111246788899999999999999999887
Q ss_pred ccCC
Q 029029 173 RVQP 176 (200)
Q Consensus 173 ~~~~ 176 (200)
....
T Consensus 239 ~p~~ 242 (638)
T 3j25_A 239 SSTH 242 (638)
T ss_dssp CSGG
T ss_pred Cccc
Confidence 6543
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.47 E-value=1.4e-13 Score=105.34 Aligned_cols=112 Identities=18% Similarity=0.100 Sum_probs=85.8
Q ss_pred CeEEEEEEEe-CCC-----ccccccchhhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 56 DATVKFEIWD-TAG-----QERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 56 ~~~~~~~i~D-~~G-----~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
++.+.+..+| +.| ++++..+...++.++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL 123 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC
Confidence 3344555555 223 5677778888999999999999999886 78888899887665 478999999999997
Q ss_pred CCCCCC-HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 129 DARKVT-AEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 129 ~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
+...+. .+....+++..+++++++||++|.|++++++.+...
T Consensus 124 ~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 124 NEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred CccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCc
Confidence 543222 344556666778999999999999999998876544
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.46 E-value=1.7e-13 Score=115.54 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=94.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcc-cCcc-------------------------------------------
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTI------------------------------------------- 43 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-~~~~------------------------------------------- 43 (200)
....+|+|+|.+++|||||+|+|++..+.+.. ....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 34569999999999999999999986552111 0000
Q ss_pred -----eeeE--EEEEEEECCeEEEEEEEeCCCcccc-------------ccchhhhh-cCCcEEEEEEeCCCHHHHHHHH
Q 029029 44 -----GAAF--FSQTLAVNDATVKFEIWDTAGQERY-------------HSLAPMYY-RGAAAAIIVYDITNQASFERAK 102 (200)
Q Consensus 44 -----~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 102 (200)
+++. ....+..++ ...+.|+||||.... ......++ ..+|++++|+|.+.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0000 000111111 124889999996431 12233333 5789999999998643222221
Q ss_pred HHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH----cC-CcEEEecCCCCCCHHHHHHHHHHh
Q 029029 103 KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE----NG-LFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 103 ~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
.++..+ ...+.|+++|+||+|+......... ... .+. .+ .+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHH---CTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH---HhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 233333 2347899999999999765443322 111 011 12 246678999999999999998874
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.45 E-value=1.4e-13 Score=106.81 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=63.9
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE 137 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~ 137 (200)
+..+.|+||+|..... ......+|.+++++|....+....+... +. ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 4579999999975322 2345789999999998754322111111 11 13456778999974322111112
Q ss_pred HHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 138 AQAYAQE----------NGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 138 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
.+.+... +..+++.+||.++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233221 1457889999999999999999988765
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=96.88 Aligned_cols=106 Identities=8% Similarity=-0.029 Sum_probs=70.5
Q ss_pred CCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHH---HHhC--CCCCeEEEEEeCc-CccCCCCCCHHHHHH
Q 029029 67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL---QAQG--NPNMVMALAGNKA-DLLDARKVTAEEAQA 140 (200)
Q Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~~~~--~~~~~~ivv~nK~-D~~~~~~~~~~~~~~ 140 (200)
+|+..++.+|..|+.++|++|||+|++|++.++ ....+..+ .... ..+.|++|++||. |+. ..++..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence 378899999999999999999999999875433 33333222 2221 2578999999995 663 3456655544
Q ss_pred HHHH----cCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 141 YAQE----NGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 141 ~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
.... ....+..|||.+|+|+.+.++||.+.+....
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 4322 2334789999999999999999998886654
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=5.4e-11 Score=93.71 Aligned_cols=88 Identities=18% Similarity=0.103 Sum_probs=56.7
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCc
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQ 69 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~ 69 (200)
......+++|+|++|+|||||+|.|++... .....|..........+.+++. +..+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 335567999999999999999999998554 2222222222222223333331 146899999995
Q ss_pred cc-------cccchhhhhcCCcEEEEEEeCC
Q 029029 70 ER-------YHSLAPMYYRGAAAAIIVYDIT 93 (200)
Q Consensus 70 ~~-------~~~~~~~~~~~~d~~i~v~d~~ 93 (200)
.. +.......+..+|++++|+|..
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 42 2223334568899999999976
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=100.63 Aligned_cols=89 Identities=12% Similarity=0.012 Sum_probs=50.6
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCccc
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQER 71 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~ 71 (200)
.....+|+++|.+|+|||||+++|++........+..+.+.....+.+++. ...+++||+||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 345789999999999999999999976542222222222111222233321 23599999999765
Q ss_pred ccc-------chhhhhcCCcEEEEEEeCCCH
Q 029029 72 YHS-------LAPMYYRGAAAAIIVYDITNQ 95 (200)
Q Consensus 72 ~~~-------~~~~~~~~~d~~i~v~d~~~~ 95 (200)
... ....+++.+|++++|+|..+.
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 332 345567899999999998753
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.30 E-value=5.1e-12 Score=94.54 Aligned_cols=108 Identities=7% Similarity=-0.060 Sum_probs=74.5
Q ss_pred CCCccccccchhhhhcCCcEEEEEEeCCCHHHHH---HHHHHHHHHHHhC-CCCCeEEEEEeC-cCccCCCCCCHHHHHH
Q 029029 66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE---RAKKWVQELQAQG-NPNMVMALAGNK-ADLLDARKVTAEEAQA 140 (200)
Q Consensus 66 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~~~ivv~nK-~D~~~~~~~~~~~~~~ 140 (200)
.+|+...+.+|..|+.++|++|||+|++|++.++ ++.+....+.... ..+.|++|++|| .|+.. .++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3578899999999999999999999999876433 2222212222221 257899999996 57743 455555544
Q ss_pred HHHH----cCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029 141 YAQE----NGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 141 ~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (200)
.... ....+..|||.+|+|+.+.++||.+.+....
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 4322 2234789999999999999999999987654
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.10 E-value=1.1e-11 Score=97.45 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=86.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCc----ccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQ----FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------AP 77 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 77 (200)
..+|+++|.+|+|||||+|+|++.. .....+...|++.......... .+.++||||....... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 4689999999999999999999651 1122334445555555555443 2899999996432211 11
Q ss_pred hhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCC
Q 029029 78 MYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 155 (200)
Q Consensus 78 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (200)
.++ ...+.++++++....-.+..+ ..+......+.|+++++||.|..+..... .....+.+..+..+.+.++.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~~ 313 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGL----ARLDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSKR 313 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCGG
T ss_pred HHhcccccCceEEEEcCCceEEECCE----EEEEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCch
Confidence 122 568899999988432100010 11112223578999999999987544332 23445556667776666665
Q ss_pred CCCCH
Q 029029 156 TATNV 160 (200)
Q Consensus 156 ~~~~i 160 (200)
+..++
T Consensus 314 ~~~~~ 318 (369)
T 3ec1_A 314 YAAEF 318 (369)
T ss_dssp GTTTC
T ss_pred hhhhc
Confidence 54443
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=6.4e-12 Score=98.62 Aligned_cols=137 Identities=12% Similarity=0.181 Sum_probs=79.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcc-----cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch----h---
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQF-----IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----P--- 77 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~--- 77 (200)
..+|+++|.+|+|||||+|+|++... ....+...+++.......+... +.++||||........ .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 46899999999999999999997531 1123444555555555554432 8999999964322111 1
Q ss_pred -hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029 78 -MY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 78 -~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
.+ ....+..+++++.........+ ..+......+.|+++++||.|..+.... ......+.+..+..+.+.++
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred HHhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence 11 2567888888887421000010 1111122357899999999998754332 23344455556665555554
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.00 E-value=7.9e-10 Score=83.17 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=71.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcc---------cCcceeeEEEEEEEECCeEEEEEEEeCCCccccc---cch-
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ---------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---SLA- 76 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~~~- 76 (200)
.++++|+|++|+|||||++.|++...+..- ................+-...++++|++|..... ..+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 578999999999999999999974332110 0000000001111111122368999999843210 000
Q ss_pred --h----------------------hhhcCCcEEEEEEeCC-CH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029 77 --P----------------------MYYRGAAAAIIVYDIT-NQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130 (200)
Q Consensus 77 --~----------------------~~~~~~d~~i~v~d~~-~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~ 130 (200)
. ..+..+++.++++|.. .+ ...+ ...+..+.. . .++++|++|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---c-CcEEEEEeccccCCH
Confidence 0 0123468888999864 22 1111 233333332 2 789999999997653
Q ss_pred CCCC--HHHHHHHHHHcCCcEEEe
Q 029029 131 RKVT--AEEAQAYAQENGLFFMET 152 (200)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~~ 152 (200)
.+.. ...++.....+++.+|+.
T Consensus 156 ~e~~~~k~~i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 156 EEKSEFKQRVRKELEVNGIEFYPQ 179 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHcCccccCC
Confidence 3221 123344455677776643
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.98 E-value=2.9e-10 Score=92.24 Aligned_cols=152 Identities=12% Similarity=0.101 Sum_probs=85.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh------Cccc---C-cccC-----------cceeeEEEEEEE-------------
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK------GQFI---E-FQES-----------TIGAAFFSQTLA------------- 53 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~------~~~~---~-~~~~-----------~~~~~~~~~~~~------------- 53 (200)
.+...|+|+|.+||||||++++|.. ...- . .+.+ ..+..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999983 2110 0 0000 001221111000
Q ss_pred ECCeEEEEEEEeCCCccccc-cchhh---h--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEeCcC
Q 029029 54 VNDATVKFEIWDTAGQERYH-SLAPM---Y--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKAD 126 (200)
Q Consensus 54 ~~~~~~~~~i~D~~G~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-ivv~nK~D 126 (200)
.....+.+.|+||||..... ..+.. . +..+|.+++|+|........ .....+... .|+ .+|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCc
Confidence 00034579999999975322 11111 1 22789999999998643211 112222221 454 78999999
Q ss_pred ccCCCCCCHHHHHHHHHHcCCcE------------------EEecCCCCCC-HHHHHHHHHHh
Q 029029 127 LLDARKVTAEEAQAYAQENGLFF------------------METSAKTATN-VNDIFYEIAKR 170 (200)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~ 170 (200)
..... . .........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 75321 1 1222334445443 2368889999 99999998876
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=85.74 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=69.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCccc--CcceeeEEEEE--EEECCeEEEEEEEeCCCccccc------------
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE--STIGAAFFSQT--LAVNDATVKFEIWDTAGQERYH------------ 73 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~~~------------ 73 (200)
.++++|+|++|+|||||++.|.+..+..... ...+....... ....+....+.++|++|.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 3569999999999999999999754321111 01122221111 2222233478999999854210
Q ss_pred --cch----hhh---------hcCC--cE-EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH
Q 029029 74 --SLA----PMY---------YRGA--AA-AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135 (200)
Q Consensus 74 --~~~----~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~ 135 (200)
..+ ..+ ...+ |+ ++++.|...+-+ ... +..+.... .+.|+|+|+||+|.....++..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~D--ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLD--LVTMKKLD-SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHH--HHHHHHTC-SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHH--HHHHHHHh-hCCCEEEEEcchhccchHHHHH
Confidence 001 011 1122 33 455556554322 211 22223332 5789999999999765332211
Q ss_pred --HHHHHHHHHcCCcEEEecCC
Q 029029 136 --EEAQAYAQENGLFFMETSAK 155 (200)
Q Consensus 136 --~~~~~~~~~~~~~~~~~Sa~ 155 (200)
..++......+++++.+|..
T Consensus 197 l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHcCCcEEecCCC
Confidence 11222233456777777743
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.95 E-value=2.9e-08 Score=78.74 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=85.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcc-eeeE--EEEEEEECCeEEEEEEEeCCCccccccchhhh-----hc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI-GAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-----YR 81 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~ 81 (200)
...++|+|++|||||||+|.|.+...+..-.-.. +... ....... .....+.+||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4479999999999999999999633222111111 1110 0111111 111258999999864322111222 23
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc-------CCCCCCHH----HHHHHHH----HcC
Q 029029 82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL-------DARKVTAE----EAQAYAQ----ENG 146 (200)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~-------~~~~~~~~----~~~~~~~----~~~ 146 (200)
..+..++ ++....+. .-......+.. .+.|+++|.||.|+. ........ .++.+.. ..+
T Consensus 148 ~~~~~~~-lS~G~~~k--qrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK--NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCCH--HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCccH--HHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455554 77653111 11122222333 357999999999974 11111222 2333321 222
Q ss_pred ---CcEEEecC--CCCCCHHHHHHHHHHhccccC
Q 029029 147 ---LFFMETSA--KTATNVNDIFYEIAKRLPRVQ 175 (200)
Q Consensus 147 ---~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~~ 175 (200)
..++.+|+ .++.|++++.+.+.+.+.+..
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 35788999 556679999999998886654
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.93 E-value=3.7e-09 Score=82.94 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=73.1
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHH----HHH
Q 029029 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQA----YAQ 143 (200)
Q Consensus 68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~----~~~ 143 (200)
..+.+......+.+.++++++|+|++++. ..|...+.... .++|+++|+||+|+.... ...+.... +++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45678888888999999999999999863 34545555442 378999999999997533 33333333 356
Q ss_pred HcCC---cEEEecCCCCCCHHHHHHHHHHhc
Q 029029 144 ENGL---FFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
..+. .++.+||++|.|++++++++.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999999997754
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.76 E-value=8.8e-09 Score=77.92 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=36.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 70 (200)
...++|+++|.+|+|||||+|+|.+... .......|++.....+.... .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 4568999999999999999999996442 23444555554443333322 58999999964
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.76 E-value=1.2e-08 Score=77.26 Aligned_cols=100 Identities=15% Similarity=0.047 Sum_probs=69.0
Q ss_pred EEeCCCcc-ccccchhhhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH
Q 029029 63 IWDTAGQE-RYHSLAPMYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ 139 (200)
Q Consensus 63 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~ 139 (200)
+-..||+. .........+..+|+++.|+|..+|.+.. .+..++ .++|.++|+||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 34578875 34455566789999999999999986653 233332 4689999999999965311 22233
Q ss_pred HHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029 140 AYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172 (200)
Q Consensus 140 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (200)
.+.+..+++++.+||.++.|++++++.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 444456789999999999999999998887765
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.75 E-value=1.4e-08 Score=79.66 Aligned_cols=97 Identities=22% Similarity=0.248 Sum_probs=71.4
Q ss_pred CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH----HH
Q 029029 68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY----AQ 143 (200)
Q Consensus 68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~----~~ 143 (200)
.++.+......++..++++++|+|++++.+ .|...+.... .++|+++|+||+|+.... ...+....+ ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467888888888899999999999998753 3333333332 378999999999997542 333333333 45
Q ss_pred HcCC---cEEEecCCCCCCHHHHHHHHHHhc
Q 029029 144 ENGL---FFMETSAKTATNVNDIFYEIAKRL 171 (200)
Q Consensus 144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (200)
..+. .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666 689999999999999999987754
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.68 E-value=6.4e-09 Score=77.87 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=36.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 72 (200)
++++++|.+|+|||||+|+|.+.... ...+..|++.....+... ..+++|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence 69999999999999999999965442 334455554433333332 25899999997543
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.48 E-value=5.2e-07 Score=71.99 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=77.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccC----------cc-----------cCcceeeEEEEEEEEC------------
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQ-----------ESTIGAAFFSQTLAVN------------ 55 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~------------ 55 (200)
++..|+++|++|+||||++..|....... .+ ....+...+......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999887311000 00 0011221111000000
Q ss_pred -CeEEEEEEEeCCCcccccc-chh-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029 56 -DATVKFEIWDTAGQERYHS-LAP-----MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128 (200)
Q Consensus 56 -~~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~ 128 (200)
..++.+.++||+|...... ... .....+|.+++|+|........ .....+... -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCc
Confidence 0126799999999543211 111 1133689999999987643221 222333332 23467899999964
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
. ....+.......+.|+..++. |+++
T Consensus 253 ~----~gG~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 253 A----KGGGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp S----SHHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred c----cccHHHHHHHHHCCCEEEEEc--CCCh
Confidence 3 233455556677888776664 4444
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.40 E-value=1.3e-07 Score=75.60 Aligned_cols=133 Identities=16% Similarity=0.094 Sum_probs=71.1
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcc-----c---C-c-cc-----------CcceeeEEEEE--------E----EEC
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQF-----I---E-F-QE-----------STIGAAFFSQT--------L----AVN 55 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~-----~---~-~-~~-----------~~~~~~~~~~~--------~----~~~ 55 (200)
....|+++|++|+||||++..|..... . . . +. ...+....... + ...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 346799999999999999999875210 0 0 0 00 00011111000 0 000
Q ss_pred CeEEEEEEEeCCCcccccc-chh---h--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC-e-EEEEEeCcCc
Q 029029 56 DATVKFEIWDTAGQERYHS-LAP---M--YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM-V-MALAGNKADL 127 (200)
Q Consensus 56 ~~~~~~~i~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~-~ivv~nK~D~ 127 (200)
...+.+.++||||...... ... . .+..+|.+++|+|...... .......+. ... | ..+|+||.|.
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCC
Confidence 1345789999999653211 111 1 1236899999999876431 111222222 223 4 7889999996
Q ss_pred cCCCCCCHHHHHHHHHHcCCcEEEe
Q 029029 128 LDARKVTAEEAQAYAQENGLFFMET 152 (200)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
... ...+.......+.++..+
T Consensus 251 ~~~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 251 SAK----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp CST----THHHHHHHHHSSCCEEEE
T ss_pred ccc----hHHHHHHHHHHCCCEEEe
Confidence 421 122344566667765544
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.38 E-value=1.3e-07 Score=70.80 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=62.3
Q ss_pred CCCccc-cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH
Q 029029 66 TAGQER-YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE 144 (200)
Q Consensus 66 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 144 (200)
.||+.. ........+.++|+++.|+|+.+|.+..... +. +. ++|.++|+||+|+.+... .+....+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 466542 2345556789999999999999886543210 11 11 689999999999975321 2223344455
Q ss_pred cCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029 145 NGLFFMETSAKTATNVNDIFYEIAKR 170 (200)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (200)
.+.++ .+||.++.|+++++..+.+.
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 67888 99999999999998877654
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.31 E-value=5.5e-07 Score=74.40 Aligned_cols=65 Identities=15% Similarity=-0.005 Sum_probs=39.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCc-ceeeEEEEEE--EE-CCeEEEEEEEeCCCccc
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-IGAAFFSQTL--AV-NDATVKFEIWDTAGQER 71 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~ 71 (200)
..+.++|+|+|.+|+|||||+|+|++....-....+ .+.+...+.. .. ...+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 355688999999999999999999976531111111 1111111111 11 12345799999999653
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.29 E-value=6.4e-07 Score=71.40 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=75.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhCcccC----------cc-----------cCcceeeEEEEEE-------------EE
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQ-----------ESTIGAAFFSQTL-------------AV 54 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~-----------~~~~~~~~~~~~~-------------~~ 54 (200)
+..-|+++|++|+||||++..|....... .+ ....+........ ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999887311000 00 0011111111000 00
Q ss_pred CCeEEEEEEEeCCCccc--ccc-chhh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029 55 NDATVKFEIWDTAGQER--YHS-LAPM-----YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (200)
Q Consensus 55 ~~~~~~~~i~D~~G~~~--~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D 126 (200)
....+.+.++||||... ... .... .....+.+++|+|........ .....+... -.+..+|+||.|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEeccc
Confidence 11245688999999543 111 1111 122568999999997643221 222333332 134678999999
Q ss_pred ccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029 127 LLDARKVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
... ....+.......+.|+..++.
T Consensus 250 ~~a----~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 250 GTA----KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp GCS----CHHHHHHHHHHHTCEEEEEEC
T ss_pred ccc----cchHHHHHHHHHCCCEEEEEC
Confidence 642 344456666678898777765
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.22 E-value=5e-07 Score=68.93 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=60.2
Q ss_pred ccchhhhhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHHHHHHHHHcCCcE
Q 029029 73 HSLAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEEAQAYAQENGLFF 149 (200)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 149 (200)
..+....+.++|.+++|+|..+|.. ...+.+++.... ..++|.++|+||+|+.+.... ..+...+.....+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3445557899999999999997654 333344443332 247889999999999764320 1233444445568899
Q ss_pred EEecCCCCCCHHHHH
Q 029029 150 METSAKTATNVNDIF 164 (200)
Q Consensus 150 ~~~Sa~~~~~i~~~~ 164 (200)
+.+||.++.|+++++
T Consensus 154 ~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 154 YLTSSKDQDSLADII 168 (307)
T ss_dssp EECCHHHHTTCTTTG
T ss_pred EEEecCCCCCHHHHH
Confidence 999999888877644
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.18 E-value=3.6e-06 Score=70.18 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
.|+|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999653
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.15 E-value=6.5e-06 Score=62.62 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCccc--ccc-chh-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCcc
Q 029029 58 TVKFEIWDTAGQER--YHS-LAP-----MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLL 128 (200)
Q Consensus 58 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~ 128 (200)
.+.+.++||||... ... ... .....+|.+++|+|..... ......+.+.. ..+ ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 45699999999765 211 111 1244789999999986432 11122233322 234 67889999964
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (200)
. ....+.......+.|+..++ .|.+++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 2 23445666777888877765 455544
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.08 E-value=2.3e-07 Score=75.11 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=57.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--cccch--------h
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLA--------P 77 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 77 (200)
..+..|+++|.+||||||+.++|....... ..++.+...........+......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987432211 111111000000000011112346788888632 22222 4
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 029029 78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111 (200)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 111 (200)
.++...++.++|+|.++. .......|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 456667888999999986 455556676666554
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=1.2e-05 Score=61.90 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=75.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHhCcccCccc---------------------CcceeeEEEEEEEEC-----------
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE---------------------STIGAAFFSQTLAVN----------- 55 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~----------- 55 (200)
.+.--++++|++||||||+++.|.+...+.... ...++.+........
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345678999999999999999987522110000 001111110000000
Q ss_pred --CeEEEEEEEeCCCccccccc-hhh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029 56 --DATVKFEIWDTAGQERYHSL-APM-----YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127 (200)
Q Consensus 56 --~~~~~~~i~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~ 127 (200)
.....+.++|++|....... ... ..-..|-.++++|..... .+......+.... ....+++||.|.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~ 280 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDA 280 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCC
Confidence 01234667999996432211 111 122478889999976542 2333334444321 124678999995
Q ss_pred cCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160 (200)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (200)
.. ....+.......+.|+..++ +|.++
T Consensus 281 ~a----~~G~~l~~~~~~~~pi~~i~--~Ge~v 307 (328)
T 3e70_C 281 DA----RGGAALSISYVIDAPILFVG--VGQGY 307 (328)
T ss_dssp CS----CCHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred cc----chhHHHHHHHHHCCCEEEEe--CCCCc
Confidence 32 22335566677788877666 44444
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.00 E-value=2.4e-05 Score=60.85 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=55.8
Q ss_pred hhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC-CHHHHHHHHHHcCCcEEEecCCC
Q 029029 79 YYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV-TAEEAQAYAQENGLFFMETSAKT 156 (200)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 156 (200)
...++|.+++|... .|.. ...+.+++...... ++|.++|+||+|+.+.... ..+.........+++++.+||.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46889999988654 4543 33344554443333 6788999999999764320 01223333445788999999999
Q ss_pred CCCHHHHHHHH
Q 029029 157 ATNVNDIFYEI 167 (200)
Q Consensus 157 ~~~i~~~~~~l 167 (200)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999876543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.80 E-value=3e-05 Score=62.06 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=22.8
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHhC
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
..+-.-|.|+|++++|||||+|.|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345567899999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.74 E-value=2e-05 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.718 Sum_probs=20.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998854
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.62 E-value=3.4e-05 Score=54.16 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|||||||++.|.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999985
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.61 E-value=3.5e-05 Score=54.98 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 239
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.56 E-value=0.0001 Score=52.51 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=56.1
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHH
Q 029029 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAE 136 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~ 136 (200)
+.+.++|+|+.. .......+..+|.+|++...+... ..+...++.+.... .++.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 678999999865 334455667799999999887653 55666666665543 345677999999984321 223
Q ss_pred HHHHHHHHcCCcEE
Q 029029 137 EAQAYAQENGLFFM 150 (200)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (200)
+..+..+..+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555555665544
No 240
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.51 E-value=6.3e-05 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=20.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...-.|+|+|++|||||||++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.51 E-value=5.7e-05 Score=53.22 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 029029 13 LVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~ 33 (200)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999853
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.50 E-value=6e-05 Score=53.71 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999853
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.50 E-value=5.9e-05 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999853
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.48 E-value=7.3e-05 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.-.|+|+|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 446899999999999999999853
No 245
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.47 E-value=7e-05 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
--++|+|++|||||||++.|.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999864
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.46 E-value=1.4e-05 Score=56.51 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 029029 13 LVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~ 33 (200)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999853
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.46 E-value=7e-05 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++|+|++|||||||++.|.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.46 E-value=3.9e-05 Score=58.52 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-.++|+|++|+|||||+|.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999853
No 249
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.45 E-value=7.8e-05 Score=53.45 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+...|+|+|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998875
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.43 E-value=6.1e-05 Score=52.41 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=17.6
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q 029029 12 KLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~ 31 (200)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999654
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.40 E-value=9.7e-05 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhC
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
..--|+|+|++|||||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3446899999999999999999853
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.40 E-value=8e-05 Score=54.64 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999874
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.39 E-value=9.5e-05 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....|+|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 254
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.39 E-value=0.00011 Score=50.56 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998644
No 255
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.37 E-value=7.4e-05 Score=59.73 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=44.4
Q ss_pred EEEEEEEeCCCcccccc-chh-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCC
Q 029029 58 TVKFEIWDTAGQERYHS-LAP-----MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~ 130 (200)
.+.+.++||||...... ... ..+..++.+++|+|....... ......+... .+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCcc
Confidence 45799999999643321 111 123478999999998753221 1222233222 22 3468999996432
Q ss_pred CCCCHHHHHHHHHHcCCcE
Q 029029 131 RKVTAEEAQAYAQENGLFF 149 (200)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (200)
. ..+.......+.|+
T Consensus 256 --~--g~~l~i~~~~~~Pi 270 (433)
T 2xxa_A 256 --G--GAALSIRHITGKPI 270 (433)
T ss_dssp --C--THHHHHHHHHCCCE
T ss_pred --H--HHHHHHHHHHCCCe
Confidence 1 23344555556653
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.35 E-value=0.00012 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.--|+|+|++|||||||++.|...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 345899999999999999999854
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.33 E-value=0.00013 Score=53.75 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999985
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.33 E-value=9.8e-05 Score=53.76 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999874
No 259
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.32 E-value=0.0002 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|+|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=0.00015 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998853
No 261
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.29 E-value=0.00013 Score=52.72 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999874
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.29 E-value=0.00013 Score=54.84 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999985
No 263
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.28 E-value=0.0033 Score=44.97 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred EEEEEEEeCCCc-cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029 58 TVKFEIWDTAGQ-ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE 136 (200)
Q Consensus 58 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 136 (200)
.+.+.++|+|+. .. ......+..+|.+|++...+. .+...+...++.+.... +.++.+|+|+.|.... ....
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence 356899999886 32 233456778999999988754 45566666666666632 4568899999985320 1234
Q ss_pred HHHHHHHHcCCcEE
Q 029029 137 EAQAYAQENGLFFM 150 (200)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (200)
+..+..+..+.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 45555555665544
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.28 E-value=0.00013 Score=53.57 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999984
No 265
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.28 E-value=0.00013 Score=54.38 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999885
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.28 E-value=0.00016 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.28 E-value=0.00016 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCc
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998543
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.27 E-value=0.00017 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..|+|+|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 269
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.26 E-value=0.00016 Score=53.81 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++|+|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999885
No 270
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.26 E-value=0.00014 Score=54.04 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999985
No 271
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.26 E-value=0.00017 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..-|+|+|++|||||||++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999974
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.26 E-value=0.00014 Score=54.38 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999985
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.25 E-value=0.00016 Score=52.87 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999985
No 274
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.25 E-value=0.00015 Score=54.04 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 478999999999999999874
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.24 E-value=0.00017 Score=53.16 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999885
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.24 E-value=0.00018 Score=55.99 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
.++|+|++|+|||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999543
No 277
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.24 E-value=0.00016 Score=53.23 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999885
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.23 E-value=0.0002 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
...|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999988
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.23 E-value=0.00018 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999853
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.23 E-value=0.00017 Score=53.27 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999875
No 281
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.22 E-value=0.00017 Score=53.63 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999985
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.22 E-value=0.0002 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
=.++|+|++|||||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999999885
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.22 E-value=0.0002 Score=49.32 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHH
Q 029029 11 AKLVLLGDVGAGKSSLVLRF 30 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l 30 (200)
.-|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 284
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.22 E-value=0.00019 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999853
No 285
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.22 E-value=0.00017 Score=53.31 Aligned_cols=21 Identities=48% Similarity=0.664 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999874
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.20 E-value=0.00025 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999974
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.20 E-value=0.00014 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++++|++|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.19 E-value=0.0002 Score=53.33 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999985
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.18 E-value=0.00021 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 290
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.18 E-value=0.00021 Score=53.77 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999885
No 291
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.17 E-value=0.0002 Score=53.70 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999885
No 292
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.16 E-value=0.00021 Score=53.03 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999885
No 293
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.16 E-value=0.00024 Score=51.03 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.1
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q 029029 11 AKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~ 31 (200)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 294
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.15 E-value=0.00021 Score=53.38 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999875
No 295
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00026 Score=50.90 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 296
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.12 E-value=0.00035 Score=49.64 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=22.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
....+.|+|+|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999998863
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.12 E-value=0.00031 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-++|+|++|||||||+++|+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999985
No 298
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.12 E-value=0.00024 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.++++|++|+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 299
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.11 E-value=0.00028 Score=53.95 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....-|+|+|++|||||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34566799999999999999999875
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.11 E-value=0.00029 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-|+++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 301
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00036 Score=48.94 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.4
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhC
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
+...|+|+|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988643
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.10 E-value=0.00031 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
....|+|+|++||||||+++.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 303
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.10 E-value=0.00034 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 304
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.00029 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++++|++|||||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999853
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.09 E-value=0.00018 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=14.8
Q ss_pred eEEEECCCCCCHHHHHHHHH-hC
Q 029029 12 KLVLLGDVGAGKSSLVLRFV-KG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~-~~ 33 (200)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.09 E-value=0.00032 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|+|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 307
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.08 E-value=0.00032 Score=51.41 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=18.5
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q 029029 12 KLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~ 31 (200)
-++|+|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.07 E-value=0.00034 Score=49.80 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.00037 Score=49.51 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 310
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.06 E-value=0.00031 Score=50.82 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|||||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999985
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.06 E-value=0.00036 Score=49.45 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.05 E-value=0.00037 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 313
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.05 E-value=0.00033 Score=53.27 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q 029029 11 AKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~ 31 (200)
-.++++|++|+|||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999998
No 314
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.05 E-value=0.00035 Score=53.13 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
-.++++|++|||||||++.|.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357999999999999999998543
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.05 E-value=0.00037 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.05 E-value=0.00041 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
...|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 317
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.04 E-value=0.00039 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+...|+|+|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 318
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.00035 Score=54.41 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999875
No 319
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.03 E-value=0.00016 Score=50.30 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999884
No 320
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.03 E-value=0.00021 Score=54.49 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.|.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999998874
No 321
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.02 E-value=0.00047 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+.++|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998863
No 322
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.02 E-value=0.00038 Score=54.26 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|||||||++.+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 468999999999999999985
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.02 E-value=0.00052 Score=48.96 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.7
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....|+|+|++||||||+++.|..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999875
No 324
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.02 E-value=0.00032 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998853
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00045 Score=48.56 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
...|+|+|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998875
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.02 E-value=0.00034 Score=54.46 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4689999999999999999853
No 327
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.01 E-value=0.00037 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
...|+|+|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.01 E-value=0.00051 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHH
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~ 31 (200)
....|+++|++||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999886
No 329
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.0004 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.00 E-value=0.0005 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56799999999999999998863
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.00 E-value=0.00051 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998875
No 332
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.00 E-value=0.00047 Score=49.47 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+.|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988863
No 333
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.00 E-value=0.00032 Score=53.06 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999875
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.00 E-value=0.00049 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 335
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.99 E-value=0.00041 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999853
No 336
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.99 E-value=0.00046 Score=48.24 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.9
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998863
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.99 E-value=0.00051 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.5
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.00063 Score=47.66 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....|+|+|.+||||||+++.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567799999999999999998863
No 339
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.97 E-value=0.00073 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHH
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~ 31 (200)
....|+|.|++||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998886
No 340
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.97 E-value=0.00042 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998863
No 341
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.97 E-value=0.00044 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999853
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.97 E-value=0.00045 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4689999999999999999853
No 343
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.00046 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4689999999999999999853
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.96 E-value=0.00064 Score=52.10 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.9
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...++-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988753
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.96 E-value=0.00069 Score=51.24 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.0
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..+...|+|+|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988763
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.94 E-value=0.00056 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998863
No 347
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00052 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.--++++|++||||||+++.|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 348
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.93 E-value=0.0005 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999999853
No 349
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.93 E-value=0.00049 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.++|+|++|||||||++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999985
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.93 E-value=0.00051 Score=53.74 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999999853
No 351
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.92 E-value=0.00054 Score=47.54 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988863
No 352
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.92 E-value=0.00061 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
....-|+|.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999999974
No 353
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.91 E-value=0.00062 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.91 E-value=0.00055 Score=51.33 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999985
No 355
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.91 E-value=0.00071 Score=51.47 Aligned_cols=32 Identities=22% Similarity=0.498 Sum_probs=21.8
Q ss_pred CCCCCCCccceeEEEECCCCCCHHHHHHHHHh
Q 029029 1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
|+.+.+...+.-|+|+|++|||||||...|..
T Consensus 1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 1 MSDISKASLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp ------CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCccccCCCCcEEEEECCCccCHHHHHHHHHH
Confidence 45555555455689999999999999999873
No 356
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.90 E-value=0.00046 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++|+|++|||||||++.|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999984
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.89 E-value=0.00078 Score=51.29 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.|+|+|++||||||+++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999875
No 358
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.88 E-value=0.00054 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 359
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.88 E-value=0.00057 Score=54.35 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
--++|+|++|||||||++.+++
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999985
No 360
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.87 E-value=0.00039 Score=47.21 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++++|++|+|||||++.+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999885
No 361
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.87 E-value=0.0006 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHH
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~ 31 (200)
+.+.|+|+|++||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999885
No 362
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.87 E-value=0.0015 Score=43.87 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
...|++.|++|+|||++.+.+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 4569999999999999988775
No 363
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.86 E-value=0.00095 Score=48.24 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999888863
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.86 E-value=0.00066 Score=49.16 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 365
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.86 E-value=0.00071 Score=49.30 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.2
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
....+|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998863
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.86 E-value=0.00062 Score=47.46 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.+|+|++|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999864
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.86 E-value=0.00078 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....|+|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998875
No 368
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.85 E-value=0.038 Score=41.71 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=54.0
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEE-EEEeCcCccCCCCCCH
Q 029029 58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMA-LAGNKADLLDARKVTA 135 (200)
Q Consensus 58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~i-vv~nK~D~~~~~~~~~ 135 (200)
.+.+.++|+|+.-... .....+..+|.+|++...+. .+...+...++.+.... ..+.+++ +|+|+.+..
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 4678999998754322 22345678999999987643 45666666666666532 2455654 899999831
Q ss_pred HHHHHHHHHcCCcEEE
Q 029029 136 EEAQAYAQENGLFFME 151 (200)
Q Consensus 136 ~~~~~~~~~~~~~~~~ 151 (200)
...+.+.+..+.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 3355566666766553
No 369
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.85 E-value=0.00046 Score=53.18 Aligned_cols=22 Identities=18% Similarity=0.567 Sum_probs=20.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++|+|++|||||||++.|.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999885
No 370
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.85 E-value=0.00087 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.3
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....|+|+|++|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998874
No 371
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.84 E-value=0.0007 Score=49.91 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|+|||||++.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999985
No 372
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.84 E-value=0.00068 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.7
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
...|+|+|++||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 373
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.84 E-value=0.00078 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..++|+|++|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999884
No 374
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.83 E-value=0.00041 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999999853
No 375
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.83 E-value=0.00068 Score=48.46 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=21.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+...|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998863
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.83 E-value=0.00074 Score=47.81 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.6
Q ss_pred cceeEEEECCCCCCHHHHHHHHHhC
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
+...|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999988753
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.81 E-value=0.00095 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 378
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.80 E-value=0.00095 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.79 E-value=0.00084 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.1
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988854
No 380
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.79 E-value=0.00067 Score=53.44 Aligned_cols=21 Identities=43% Similarity=0.814 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 479999999999999999985
No 381
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.77 E-value=0.00087 Score=47.04 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 382
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.76 E-value=0.00088 Score=49.56 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 383
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.76 E-value=0.00079 Score=49.75 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.1
Q ss_pred CccceeEEEECCCCCCHHHHHHHHHh
Q 029029 7 KNINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 7 ~~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
......|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.75 E-value=0.00091 Score=47.08 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 385
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.75 E-value=0.00086 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.--++++|++||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44689999999999999999875
No 386
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.75 E-value=0.0007 Score=55.25 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=20.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..++|+|++|||||||++.|++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999984
No 387
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.74 E-value=0.001 Score=45.13 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
.+|+|+.|+|||||+.++..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999753
No 388
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.00074 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-.++|+|++|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999999864
No 389
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.74 E-value=0.0026 Score=50.88 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=38.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh---C---------------ccc---CcccCcceeeEEEEEEEE---CCeEEEEEE
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK---G---------------QFI---EFQESTIGAAFFSQTLAV---NDATVKFEI 63 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~---~---------------~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~i 63 (200)
++-.=|.|+|+.++|||+|+|.|+. . .+. .....+.|+-.....+.+ ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3445566999999999999996652 1 110 111122332222222211 566788999
Q ss_pred EeCCCcccc
Q 029029 64 WDTAGQERY 72 (200)
Q Consensus 64 ~D~~G~~~~ 72 (200)
+||.|....
T Consensus 145 lDTEG~~d~ 153 (457)
T 4ido_A 145 MDTQGTFDS 153 (457)
T ss_dssp EEECCBTCT
T ss_pred EeccCCCCc
Confidence 999996543
No 390
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.72 E-value=0.0009 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|+|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988863
No 391
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.72 E-value=0.00059 Score=47.52 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=15.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHH
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~ 31 (200)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 392
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.72 E-value=0.00041 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999853
No 393
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.71 E-value=0.001 Score=45.86 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988863
No 394
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.0011 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998874
No 395
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.70 E-value=0.0011 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.70 E-value=0.0012 Score=47.52 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.6
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
++.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.70 E-value=0.00098 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999875
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.70 E-value=0.0012 Score=45.93 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|+|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 399
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.70 E-value=0.00098 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=21.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+..-|+|.|+.||||||+++.|.+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998874
No 400
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.69 E-value=0.001 Score=49.75 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|+|||||++.+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 399999999999999999985
No 401
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.69 E-value=0.00034 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999873
No 402
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.68 E-value=0.0011 Score=47.88 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|+|||||+..+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999884
No 403
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.68 E-value=0.00099 Score=46.49 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888753
No 404
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.68 E-value=0.001 Score=53.82 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.--++|+|++|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44689999999999999999875
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.66 E-value=0.00069 Score=51.91 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
-++|+|+.|||||||++.|++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999653
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.65 E-value=0.0012 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHH
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~ 31 (200)
.++.|+|.|++||||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999886
No 407
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.62 E-value=0.0012 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
=+++|+|++|+|||||++.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999864
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.59 E-value=0.0016 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988874
No 409
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.57 E-value=0.0015 Score=44.81 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=19.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999888753
No 410
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.56 E-value=0.0014 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++++|++|||||||++.|.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 411
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0015 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.|+|+|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.53 E-value=0.0018 Score=48.64 Aligned_cols=24 Identities=38% Similarity=0.306 Sum_probs=21.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHH
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~ 31 (200)
.....|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 413
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0018 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+..++++|++|+|||+|++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999874
No 414
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.52 E-value=0.0014 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 415
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.52 E-value=0.0015 Score=52.79 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999886
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.48 E-value=0.002 Score=46.14 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.0
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|+|++||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998863
No 417
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.48 E-value=0.0018 Score=47.12 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|+|||||+..+.+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 579999999999999999986
No 418
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.48 E-value=0.0018 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.8
Q ss_pred ccceeEEEECCCCCCHHHHHHHH
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRF 30 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l 30 (200)
.+..||+++|.+|||||||++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45799999999999999998886
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.47 E-value=0.0014 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-++++|++|||||||++.|.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999999853
No 420
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.47 E-value=0.0018 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++++|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999986
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.45 E-value=0.0026 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...-|+|.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 422
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.43 E-value=0.0015 Score=45.27 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998874
No 423
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.43 E-value=0.0017 Score=53.89 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 424
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.42 E-value=0.0015 Score=54.23 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999874
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0018 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.|.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5799999999999999999863
No 426
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.41 E-value=0.0022 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 427
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.41 E-value=0.0018 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
+++|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999864
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.41 E-value=0.0019 Score=50.43 Aligned_cols=20 Identities=45% Similarity=0.424 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
++|+|++|||||||++.+..
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999863
No 429
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.40 E-value=0.0022 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998874
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.39 E-value=0.002 Score=50.50 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.++++|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999874
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.39 E-value=0.0024 Score=45.22 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.9
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....|+++|..||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999988863
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.37 E-value=0.0023 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.30 E-value=0.0025 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|||||||++.|.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 434
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.30 E-value=0.0022 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.|.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999999853
No 435
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.28 E-value=0.0029 Score=42.49 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|++.|++|+|||++.+.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 436
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.28 E-value=0.0024 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|+|||||++.|.+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 437
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.27 E-value=0.0033 Score=47.47 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..+.-+++.|++|+|||+|++.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788889999999999999874
No 438
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.25 E-value=0.0022 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|||||||++.|.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999853
No 439
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.24 E-value=0.018 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|.|++|+|||+|++.+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 440
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.23 E-value=0.0016 Score=54.27 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999884
No 441
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.21 E-value=0.0017 Score=54.04 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
=.++++|++|||||||++.+.+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999874
No 442
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.20 E-value=0.0032 Score=44.90 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.4
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q 029029 12 KLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~ 31 (200)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35899999999999999874
No 443
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.19 E-value=0.0033 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998874
No 444
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.19 E-value=0.003 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...+++.|++|+|||+|++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 56799999999999999999874
No 445
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.19 E-value=0.0014 Score=54.27 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
=.++++|++|||||||++.+.+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3689999999999999998874
No 446
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.18 E-value=0.0032 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 447
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.18 E-value=0.0028 Score=48.01 Aligned_cols=134 Identities=16% Similarity=0.137 Sum_probs=68.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhCccc-Cc----------ccCc-----------ceeeEEEEE----E--EE-CCeEEE
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EF----------QEST-----------IGAAFFSQT----L--AV-NDATVK 60 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~~~~-~~----------~~~~-----------~~~~~~~~~----~--~~-~~~~~~ 60 (200)
.-.|+++|++|+||||++..|.+.... .- ..+. .+....... . .+ .-....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 457899999999999999988642110 00 0000 000000000 0 00 002356
Q ss_pred EEEEeCCCcccccc-ch---hhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029 61 FEIWDTAGQERYHS-LA---PMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT 134 (200)
Q Consensus 61 ~~i~D~~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~ 134 (200)
+.++||+|...... .. ...+. ..+..++|+|.+.. ...+..+...+.. -+ ..-+|+||.|... .
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~----~ 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT----S 254 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS----C
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc----c
Confidence 99999999654321 11 11222 36778888887653 2233333222221 11 2345679999643 2
Q ss_pred HHHHHHHHHHcCCcEEEec
Q 029029 135 AEEAQAYAQENGLFFMETS 153 (200)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (200)
...+.......++|+..+.
T Consensus 255 ~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp CHHHHHHHHTCSCCCSEEC
T ss_pred hhHHHHHHHHHCcCEEEEE
Confidence 2345666677787754443
No 448
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.17 E-value=0.0039 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...+++.|++|+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 449
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.17 E-value=0.0028 Score=47.38 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 450
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.16 E-value=0.0027 Score=45.39 Aligned_cols=21 Identities=33% Similarity=0.543 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+++.|++|+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888863
No 451
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.15 E-value=0.0037 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...++|.|++|+|||+|++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999999874
No 452
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.15 E-value=0.004 Score=45.34 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.4
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....|+|+|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998864
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0031 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHhCc
Q 029029 13 LVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~~ 34 (200)
++|+|++|||||||++.|.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998543
No 454
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.14 E-value=0.0035 Score=44.54 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998874
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.14 E-value=0.0033 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|++.|++|+|||+|++.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999999874
No 456
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.13 E-value=0.0037 Score=45.51 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=20.0
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...++++|+|++||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988753
No 457
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.11 E-value=0.0036 Score=47.63 Aligned_cols=86 Identities=20% Similarity=0.118 Sum_probs=47.5
Q ss_pred EEEEEEeCCCcccccc-ch------hhh-----hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029 59 VKFEIWDTAGQERYHS-LA------PMY-----YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126 (200)
Q Consensus 59 ~~~~i~D~~G~~~~~~-~~------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D 126 (200)
+.+.++||||...... .. ... -..++.+++|+|.... .+.+.. ...+... .+ ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VN-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SC-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CC-CCEEEEeCCC
Confidence 4589999999532111 00 001 1247888999998743 222221 2233322 12 2446789999
Q ss_pred ccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029 127 LLDARKVTAEEAQAYAQENGLFFMETSA 154 (200)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (200)
... ....+.......+.|+..+..
T Consensus 261 ~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence 532 223366777788888766643
No 458
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.11 E-value=0.0048 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=20.5
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....++|.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999987653
No 459
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.11 E-value=0.002 Score=53.53 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++++|++|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998874
No 460
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.09 E-value=0.0053 Score=45.65 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.7
Q ss_pred ccceeEEEECCCCCCHHHHHHHHHh
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.....+++.|++|+|||+|++.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4456899999999999999999874
No 461
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.03 E-value=0.0039 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++|.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999874
No 462
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0047 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+..|++.||||+|||+|++++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 463
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.03 E-value=0.00052 Score=49.98 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 029029 13 LVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~ 33 (200)
++|+|++|||||||++.+.+-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999998864
No 464
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.02 E-value=0.0043 Score=54.27 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCcc
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKGQF 35 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~~~ 35 (200)
.++|+|++|||||||++.|.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999997643
No 465
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.02 E-value=0.004 Score=44.11 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.01 E-value=0.0059 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.7
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...-|+++|++||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 355689999999999999999873
No 467
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.0035 Score=48.37 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
++|.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999875
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.98 E-value=0.004 Score=44.25 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.8
Q ss_pred ceeEEEECCCCCCHHHHHHHHHhC
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~~ 33 (200)
...|+|+|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999743
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.97 E-value=0.0025 Score=47.22 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.6
Q ss_pred ccceeEEEECCCCCCHHHHHHHHH
Q 029029 8 NINAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 8 ~~~~~i~vvG~~~sGKSsli~~l~ 31 (200)
.+...|+|.|..||||||+++.|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999998876
No 470
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0053 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+..|++.||||+|||+|++++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999874
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.95 E-value=0.0041 Score=48.26 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
-+.|+|++|+|||||+..+.+.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.91 E-value=0.0021 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=17.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+..-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 455699999999999999988764
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.90 E-value=0.0069 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...+|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999987654
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0059 Score=48.75 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
++-.|++.||||+|||+|++++.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999974
No 475
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.89 E-value=0.038 Score=42.95 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|+|||||++.+..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 568999999999999999874
No 476
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.0047 Score=44.92 Aligned_cols=21 Identities=29% Similarity=0.503 Sum_probs=18.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877754
No 477
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.88 E-value=0.0051 Score=47.45 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q 029029 13 LVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~ 32 (200)
.+|+|++|+|||||++++..
T Consensus 26 ~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37999999999999998754
No 478
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.87 E-value=0.0046 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999874
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.87 E-value=0.0053 Score=44.84 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 480
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.0051 Score=47.34 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q 029029 13 LVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 13 i~vvG~~~sGKSsli~~l~~~ 33 (200)
++|.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 481
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.85 E-value=0.007 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
....+++.|++|+|||+|++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999999874
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.85 E-value=0.007 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+...|++.|++|+|||+|++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 346799999999999999999874
No 483
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.84 E-value=0.0055 Score=43.89 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...|+|.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988764
No 484
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.83 E-value=0.0055 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.++|.|++|+|||||++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999874
No 485
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.83 E-value=0.0085 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.++|.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998874
No 486
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.79 E-value=0.0059 Score=45.99 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.3
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 487
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0064 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.3
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
++..|++.||||+|||.|++++.+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 488
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.77 E-value=0.0073 Score=43.75 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=21.3
Q ss_pred CCccceeEEEECCCCCCHHHHHHHHH
Q 029029 6 NKNINAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 6 ~~~~~~~i~vvG~~~sGKSsli~~l~ 31 (200)
+..+..-|+|.|.+||||||+++.|.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34556789999999999999999886
No 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.75 E-value=0.0029 Score=55.34 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q 029029 12 KLVLLGDVGAGKSSLVLRFVKG 33 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~~ 33 (200)
.++|+|++|||||||++.|.+-
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999853
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.72 E-value=0.0075 Score=41.85 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCc
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVKGQ 34 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~~~ 34 (200)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999988643
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.71 E-value=0.0067 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-|+|+|++|||||||...|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 3578999999999999999874
No 492
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.70 E-value=0.0067 Score=46.69 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-|+|+|++|||||||...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999873
No 493
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.65 E-value=0.0043 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred cceeEEEECCCCCCHHHHHHHHHh
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
+...|+|+|++|||||||++.|.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 346799999999999999999874
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.65 E-value=0.0083 Score=43.12 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=20.2
Q ss_pred cceeEEEECCCCCCHHHHHHHHH
Q 029029 9 INAKLVLLGDVGAGKSSLVLRFV 31 (200)
Q Consensus 9 ~~~~i~vvG~~~sGKSsli~~l~ 31 (200)
+..-|+|.|++||||||+++.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 45679999999999999999886
No 495
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.62 E-value=0.0046 Score=47.35 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-.+|+|++|+|||||++.+..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999873
No 496
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.62 E-value=0.0072 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
-++|+|++|+|||||++.+.+
T Consensus 28 ~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999875
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.61 E-value=0.0033 Score=57.06 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=0.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
+|+|||++|||||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
No 498
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.60 E-value=0.0033 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q 029029 11 AKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 11 ~~i~vvG~~~sGKSsli~~l~~ 32 (200)
..+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999999875
No 499
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.59 E-value=0.0077 Score=46.28 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q 029029 12 KLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 12 ~i~vvG~~~sGKSsli~~l~~ 32 (200)
.+++.|++|+|||++++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999874
No 500
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.59 E-value=0.0085 Score=45.59 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCCHHHHHHHHHh
Q 029029 10 NAKLVLLGDVGAGKSSLVLRFVK 32 (200)
Q Consensus 10 ~~~i~vvG~~~sGKSsli~~l~~ 32 (200)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
Done!