BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029030
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 121/200 (60%), Gaps = 4/200 (2%)
Query: 2 IKDFADLGLVKLQQVGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAYS 59
++ + GLV Q RK + PT+LA NLS ++ + + GF+VVETN+R+YAY+
Sbjct: 262 LQHLREFGLVF--QRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 319
Query: 60 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 119
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 320 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 379
Query: 120 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 179
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 380 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 439
Query: 180 RLVVNAEIHMHMREFLRGQN 199
+VV H ++ F + Q
Sbjct: 440 LMVVTPAGHSDVKRFWKRQK 459
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 121/200 (60%), Gaps = 4/200 (2%)
Query: 2 IKDFADLGLVKLQQVGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAYS 59
++ + GLV Q RK + PT+LA NLS ++ + + GF+VVETN+R+YAY+
Sbjct: 262 LQHLREFGLVF--QRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 319
Query: 60 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 119
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 320 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 379
Query: 120 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 179
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 380 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 439
Query: 180 RLVVNAEIHMHMREFLRGQN 199
+VV H ++ F + Q
Sbjct: 440 LMVVTPAGHSDVKRFWKRQK 459
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 121/200 (60%), Gaps = 4/200 (2%)
Query: 2 IKDFADLGLVKLQQVGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAYS 59
++ + GLV Q RK + PT+LA NLS ++ + + GF+VVETN+R+YAY+
Sbjct: 263 LQHLREFGLVF--QRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 320
Query: 60 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 119
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 120 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 179
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 NPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 180 RLVVNAEIHMHMREFLRGQN 199
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 118/202 (58%), Gaps = 8/202 (3%)
Query: 1 MIKDFADLGLVKLQQVGRKESWFIPTKLATNLSMSLTDSSARK------EGFVVVETNFR 54
M++D + GLV +++ K F PT+LAT L+ ++ +GF++VETN+R
Sbjct: 243 MLEDLREYGLVYQRKITSKR--FYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYR 300
Query: 55 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 114
+YAY++S L I+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP
Sbjct: 301 LYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHP 360
Query: 115 RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 174
++ +P +P + DQI LWE + NR+ TP + +F + F+ A +YA++ L+W+
Sbjct: 361 QMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDFLTDSGFDQAVEYAKELGVLVWD 420
Query: 175 DSKKMRLVVNAEIHMHMREFLR 196
S K + M +L+
Sbjct: 421 SSLKRMFFITTTGAQPMIAYLK 442
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 20/218 (9%)
Query: 1 MIKDFADLGLVKLQQVGRKESWFIPTKLATNLSM------------------SLTDSSAR 42
M++D D G+V ++ + F PT+LAT L+ +++ S A
Sbjct: 245 MLEDLRDYGIVYQRKASSRR--FYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAA 302
Query: 43 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 102
GF+++ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAE
Sbjct: 303 DSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAE 362
Query: 103 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 162
QII++L +AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++
Sbjct: 363 QIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKDVS 422
Query: 163 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 200
YA++ LL+E+ K + V + EF++ +N+
Sbjct: 423 TYAKELGVLLYENPGKRKFVSTLAGSQQIVEFVKRRNQ 460
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 114/185 (61%), Gaps = 11/185 (5%)
Query: 23 FIPTKLATNLS----MSLTDS-------SARKEGFVVVETNFRMYAYSTSKLHCEILRLF 71
F PT+L +L+ +SL S + +++G++V+ETN+R+YAY++S L +L LF
Sbjct: 295 FYPTRLIISLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLF 354
Query: 72 SKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQI 131
K+ Y+LPNL VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI
Sbjct: 355 VKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQI 414
Query: 132 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 191
LWE++ NR+ T + Y FP+ D + A +A+++ +W LVV E + +
Sbjct: 415 LLWEAERNRITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKTLVVKEEGNDPI 474
Query: 192 REFLR 196
R F++
Sbjct: 475 RNFIK 479
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 50/244 (20%)
Query: 1 MIKDFADLGLVKLQQVGRKESWFIPTKLAT-----------------------NLSMSLT 37
M++D D GL+ Q + F PT+LAT N + ++
Sbjct: 250 MLQDMRDYGLIYQNQSDYAK--FYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAVE 307
Query: 38 DSSARKE-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 90
S + E G +++ETNF++Y+YS S L IL LF ++ + N++ G +T+ES
Sbjct: 308 GDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRES 367
Query: 91 LYNAFENGITAEQIISFLQQNAHPR------------------VADRIPSVPENVCDQIR 132
+ NA NGITAEQII++L+ +AHPR V + + +P V DQIR
Sbjct: 368 VRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIR 427
Query: 133 LWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMR 192
LW+ +L+R+ + Y +F S ++ DYA+D LLW++ KK V+ E + +
Sbjct: 428 LWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQVL 487
Query: 193 EFLR 196
+F R
Sbjct: 488 DFHR 491
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 18/176 (10%)
Query: 43 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 102
++G +++ETNF++Y+Y S L IL LF ++ + N++ G IT+ES+ A NGITA+
Sbjct: 325 QDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRRALINGITAD 384
Query: 103 QIISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLNRVEMT 144
Q+I++L+ +AHP++ D + +P V DQI+LW+ +L+RV
Sbjct: 385 QVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQLELDRVLTY 444
Query: 145 PAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 200
Y +F + F C YA+D LLW+D +K +L V+ E + + E+ + + K
Sbjct: 445 EGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSREGNAQVLEYAKRKIK 500
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 62/254 (24%)
Query: 1 MIKDFADLGLVKLQQVGRKESWFIPTKLATNLS---MSLTDSSA--------RKEGF--- 46
M++D D GLV +Q S F PT+LAT L+ +S+ +S R EG
Sbjct: 260 MLQDLRDYGLVFQKQ--SNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAEGVDGK 317
Query: 47 -----------------------VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 83
++VETNF++Y+YS S L IL LF ++ + N++
Sbjct: 318 VLNGTALGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVT 377
Query: 84 GAITKESLYNAFENGITAEQIISFLQQNAHP---RVA---------------DRIPSVPE 125
G IT+ES+ A NGITA+QII++++ +AHP R+A D + +P
Sbjct: 378 GQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPP 437
Query: 126 NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNA 185
V DQI+LW+ +L+R+ + + +F + ++ YARD LLW D KK V+
Sbjct: 438 TVVDQIKLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLLWSDDKKKMFFVSK 497
Query: 186 E-----IHMHMREF 194
E I H R+F
Sbjct: 498 EGNAQVIDFHKRKF 511
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 73/254 (28%)
Query: 1 MIKDFADLGLVKLQQVGRKESWFIPTKLATNLSMSLTDSSARK----------------- 43
M+ D D GL+ Q F PT+LAT L+ +DS+A K
Sbjct: 252 MLADLRDYGLI--YQRSENSERFYPTRLATTLT---SDSAALKSPSMAMEQALESTTETE 306
Query: 44 ----------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 93
+G +++ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+ N
Sbjct: 307 EQQNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRN 366
Query: 94 AFENGITAEQIISFLQQNAHPRVA------------------------------------ 117
A NGITA+QII FL+ +AH ++
Sbjct: 367 ALYNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENG 426
Query: 118 -----DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 172
++ +P V DQI+LW+ +L+R++ + +++F S+ FEA +YA + LL
Sbjct: 427 TTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLL 486
Query: 173 WEDSKKMRLVVNAE 186
W + KM+ V +
Sbjct: 487 WSNKSKMKFFVTKD 500
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 97/171 (56%), Gaps = 18/171 (10%)
Query: 44 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 103
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A NGITA+Q
Sbjct: 336 DGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQ 395
Query: 104 IISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLNRVEMTP 145
II++L+ +AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 396 IIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYE 455
Query: 146 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 196
Y +F + + YA+D LLW+D KK + ++ E + + +F +
Sbjct: 456 GSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 506
>sp|Q2JTM9|Y1810_SYNJA UPF0182 protein CYA_1810 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=CYA_1810 PE=3 SV=1
Length = 851
Score = 34.3 bits (77), Expect = 0.59, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 97 NGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 156
N +TAE + F + PRV+ R P V + + RVE PA YY E + D
Sbjct: 426 NVVTAEGLPDFFLSDIPPRVSPRYPEVAQVL------------RVEQ-PALYYSELTTTD 472
Query: 157 VFEAA 161
VF A
Sbjct: 473 VFVGA 477
>sp|Q7U7I5|MEND_SYNPX 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Synechococcus sp. (strain WH8102) GN=menD
PE=3 SV=1
Length = 545
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 102 EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA 146
+ ++ +L ++ P +AD + ++P + Q+ WE L+R+++ P
Sbjct: 218 QALLQWLARSGWPLLADPLAAIPADCPGQLDGWELQLDRLQLAPG 262
>sp|Q0AGL4|GLNE_NITEC Glutamate-ammonia-ligase adenylyltransferase OS=Nitrosomonas
eutropha (strain C91) GN=glnE PE=3 SV=1
Length = 929
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 6 ADLGLVKLQQVGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHC 65
+DL +V L Q ++ I TKLA N+++ LT ++ V+ ET+ R+ TS L
Sbjct: 679 SDLDIVYLYQDNHPDAMEIYTKLAQNINLWLTSHTS---AGVLYETDLRLRPNGTSGLLV 735
Query: 66 EILRLFSKIEYQ 77
+ FS +++
Sbjct: 736 NSIEAFSLYQHE 747
>sp|Q8N4C6|NIN_HUMAN Ninein OS=Homo sapiens GN=NIN PE=1 SV=4
Length = 2090
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 62 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 116
K+ EI RL +++ P L++ + E F G TAEQ FLQQN +V
Sbjct: 1083 KMATEISRLQQRLQKLEPGLVMSSCLDEPATEFF--GNTAEQTEQFLQQNRTKQV 1135
>sp|Q81ZZ7|GLNE_NITEU Glutamate-ammonia-ligase adenylyltransferase OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=glnE PE=3
SV=1
Length = 929
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 6 ADLGLVKLQQVGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHC 65
+DL +V L + ++ I TKLA N+++ LT ++ ++ ET+ R+ TS L
Sbjct: 679 SDLDIVFLYRDDHPDAASIYTKLAQNINLWLTSHTS---AGILYETDLRLRPNGTSGLLV 735
Query: 66 EILRLFSKIEYQ 77
+ F++ +Y+
Sbjct: 736 NSIEAFTQYQYE 747
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,200,355
Number of Sequences: 539616
Number of extensions: 2683556
Number of successful extensions: 5953
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5932
Number of HSP's gapped (non-prelim): 23
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)