Query 029030
Match_columns 200
No_of_seqs 110 out of 187
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 100.0 3.2E-35 1.1E-39 227.4 6.3 88 113-200 18-105 (108)
2 3dgp_A RNA polymerase II trans 100.0 4.1E-33 1.4E-37 205.7 7.0 76 125-200 2-77 (80)
3 1b0n_B Protein (SINI protein); 71.2 3.6 0.00012 27.9 3.2 24 91-114 19-42 (57)
4 3s4e_A Dual specificity protei 57.1 6.3 0.00022 29.2 2.6 49 86-140 92-144 (144)
5 3lab_A Putative KDPG (2-keto-3 54.5 15 0.0005 30.8 4.6 93 44-146 37-141 (217)
6 2gjf_A Designed protein; proca 47.0 39 0.0013 22.7 5.2 46 153-198 17-68 (78)
7 1zzw_A Dual specificity protei 43.8 46 0.0016 24.4 5.5 47 86-138 94-144 (149)
8 3ezz_A Dual specificity protei 43.3 28 0.00096 25.4 4.2 53 79-137 83-141 (144)
9 2kw0_A CCMH protein; oxidoredu 41.6 23 0.00077 26.0 3.3 25 88-112 46-70 (90)
10 2hl7_A Cytochrome C-type bioge 41.5 23 0.00079 25.5 3.3 24 88-111 49-72 (84)
11 3sr0_A Adenylate kinase; phosp 41.3 12 0.00041 30.1 2.0 78 75-170 23-102 (206)
12 1vjq_A Designed protein; struc 39.8 39 0.0013 22.7 4.2 46 153-198 9-60 (79)
13 3mhs_B Protein SUS1; multi-pro 39.5 14 0.0005 27.1 2.0 37 87-132 46-82 (96)
14 2e0t_A Dual specificity phosph 37.5 66 0.0023 23.5 5.5 52 78-137 86-144 (151)
15 2nt2_A Protein phosphatase sli 37.3 37 0.0013 24.8 4.1 46 86-137 92-141 (145)
16 1w8i_A Putative VAPC ribonucle 36.3 25 0.00085 26.3 3.0 110 47-176 3-121 (156)
17 2r0b_A Serine/threonine/tyrosi 31.9 87 0.003 22.9 5.4 45 86-137 101-150 (154)
18 3emu_A Leucine rich repeat and 30.1 51 0.0018 24.9 3.9 46 86-137 98-147 (161)
19 4dhx_B Enhancer of yellow 2 tr 28.6 28 0.00097 25.8 2.1 28 98-132 61-88 (101)
20 2hxp_A Dual specificity protei 28.5 1.2E+02 0.004 22.6 5.7 48 86-139 96-147 (155)
21 4e38_A Keto-hydroxyglutarate-a 27.7 43 0.0015 28.0 3.3 87 44-146 58-156 (232)
22 2d4z_A Chloride channel protei 26.7 55 0.0019 27.1 3.8 34 66-99 210-248 (250)
23 2oud_A Dual specificity protei 23.7 1.4E+02 0.0047 22.7 5.4 47 86-139 98-149 (177)
24 2pq5_A Dual specificity protei 22.5 1.7E+02 0.0059 22.9 5.9 46 86-138 142-191 (205)
25 2hcm_A Dual specificity protei 22.4 1.1E+02 0.0036 22.8 4.4 45 86-137 100-149 (164)
26 1yz4_A DUSP15, dual specificit 21.5 1.2E+02 0.0041 22.4 4.5 55 78-138 85-145 (160)
27 3sdo_A Nitrilotriacetate monoo 21.0 1.4E+02 0.0049 27.1 5.7 68 94-169 344-420 (453)
28 1tue_B Regulatory protein E2; 20.9 1.1E+02 0.0039 25.7 4.6 26 102-139 20-45 (218)
29 2g6z_A Dual specificity protei 20.7 91 0.0031 25.2 3.9 48 86-139 94-145 (211)
30 2nnu_A Regulatory protein E2; 20.6 1.2E+02 0.004 25.3 4.6 26 102-139 17-42 (205)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-35 Score=227.37 Aligned_cols=88 Identities=30% Similarity=0.591 Sum_probs=72.3
Q ss_pred CccccccCCCCCccHHHHHHHHHHhcCceEecceeeeccCCCHHHHHHHHHHHHHcCeEeeecCCcceEEEeccccHHHH
Q 029030 113 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMR 192 (200)
Q Consensus 113 Hp~m~~~~~~iP~tV~dQI~lWe~Er~R~~~~~g~L~~~f~s~~~f~~v~~ya~~~g~llw~~~~~r~~~V~~~~~~~v~ 192 (200)
.|+++...|+|||||+|||||||.||||+++++|+||++|.|+++|+++++||+++|+|||+++.+|+|||+.+||++|+
T Consensus 18 ~~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~vk 97 (108)
T 3dom_A 18 DPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVL 97 (108)
T ss_dssp --------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHHH
T ss_pred CcccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHH
Confidence 34555567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC
Q 029030 193 EFLRGQNK 200 (200)
Q Consensus 193 ~f~k~~~~ 200 (200)
+|||++++
T Consensus 98 ~f~Kr~~~ 105 (108)
T 3dom_A 98 DFAKRKLK 105 (108)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99999874
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.1e-33 Score=205.66 Aligned_cols=76 Identities=32% Similarity=0.593 Sum_probs=61.6
Q ss_pred ccHHHHHHHHHHhcCceEecceeeeccCCCHHHHHHHHHHHHHcCeEeeecCCcceEEEeccccHHHHHHHhhccC
Q 029030 125 ENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 200 (200)
Q Consensus 125 ~tV~dQI~lWe~Er~R~~~~~g~L~~~f~s~~~f~~v~~ya~~~g~llw~~~~~r~~~V~~~~~~~v~~f~k~~~~ 200 (200)
|||+|||||||.|||||++++|+||++|.|+++|+++++||+++|+|||+|+.+|+|||+.+||++|++|||++++
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999874
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=71.17 E-value=3.6 Score=27.92 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCc
Q 029030 91 LYNAFENGITAEQIISFLQQNAHP 114 (200)
Q Consensus 91 v~~Al~~GITA~QII~fL~~haHp 114 (200)
|++|-+.|+|.++|..||..+-.+
T Consensus 19 I~~Ak~lGlsleEIrefL~l~~~~ 42 (57)
T 1b0n_B 19 MVEAKEANISPEEIRKYLLLNKKS 42 (57)
T ss_dssp HHHHHHTTCCHHHHHHHHHHC---
T ss_pred HHHHHHcCCCHHHHHHHHHHhccC
Confidence 689999999999999999987543
No 4
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=57.08 E-value=6.3 Score=29.23 Aligned_cols=49 Identities=8% Similarity=0.224 Sum_probs=35.5
Q ss_pred eCHHHHH-HH---HHcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhcCc
Q 029030 86 ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 140 (200)
Q Consensus 86 lTR~Sv~-~A---l~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er~R 140 (200)
++|...- -| ...|.+.++.+.++++. +|.+ ...+....|++.||.+++|
T Consensus 92 ~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 92 VSRAAAIVIGFLMNSEQTSFTSAFSLVKNA-RPSI-----CPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-STTC-----CCCHHHHHHHHHTTHHHHC
T ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHhccC
Confidence 6786443 33 25899999999999983 4432 2345799999999987653
No 5
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=54.48 E-value=15 Score=30.84 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=63.6
Q ss_pred cceEEEeeCceEEEecCCHhHHHHHHHhhhhhhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHhhcCC
Q 029030 44 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAH 113 (200)
Q Consensus 44 ~g~IIvETNFrvYAYT~s~l~iaiL~lF~~l~~r~Pnlvvg---~lTR~Sv~~Al~~GI-------TA~QII~fL~~haH 113 (200)
.|.=.+|..|| +|-....+ ..+..++|+++|| ++|.+.++.|.+.|- +-.+++.+-+.+--
T Consensus 37 gGi~~iEvt~~------t~~a~~~I---~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v 107 (217)
T 3lab_A 37 GGVHLLEVTLR------TEAGLAAI---SAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL 107 (217)
T ss_dssp TTCCEEEEETT------STTHHHHH---HHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC------CccHHHHH---HHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC
Confidence 36667888776 45444443 4456678999999 899999999999983 34577777766533
Q ss_pred ccccccCCCCCc--cHHHHHHHHHHhcCceEecce
Q 029030 114 PRVADRIPSVPE--NVCDQIRLWESDLNRVEMTPA 146 (200)
Q Consensus 114 p~m~~~~~~iP~--tV~dQI~lWe~Er~R~~~~~g 146 (200)
.-.-++|.+|- |..+=.+.|+.--+-+++.++
T Consensus 108 -~~~~~~~~~PG~~TptE~~~A~~~Gad~vK~FPa 141 (217)
T 3lab_A 108 -DGQWQGVFLPGVATASEVMIAAQAGITQLKCFPA 141 (217)
T ss_dssp -HCSCCCEEEEEECSHHHHHHHHHTTCCEEEETTT
T ss_pred -CccCCCeEeCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 00001134453 777778889988888888774
No 6
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=47.00 E-value=39 Score=22.73 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHH--HcCeEeeecCC----cceEEEeccccHHHHHHHhhc
Q 029030 153 PSRDVFEAACDYAR--DRSGLLWEDSK----KMRLVVNAEIHMHMREFLRGQ 198 (200)
Q Consensus 153 ~s~~~f~~v~~ya~--~~g~llw~~~~----~r~~~V~~~~~~~v~~f~k~~ 198 (200)
.+.++.+.+.+..+ ..++-.|..+. .-.++|+++..+.+.+++++.
T Consensus 17 ~~~~q~~~L~~L~~~~~~~ldfW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~ 68 (78)
T 2gjf_A 17 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 68 (78)
T ss_dssp CSHHHHHHHHHHHTCTTTCCEESSCTTSTTCCEEEEECTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEeeCCCCCCCCeEEEEECHHHHHHHHHHHHHC
Confidence 45667777777776 67889998663 347899999999999999864
No 7
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=43.77 E-value=46 Score=24.38 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=34.1
Q ss_pred eCHHHHHHH----HHcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhc
Q 029030 86 ITKESLYNA----FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 138 (200)
Q Consensus 86 lTR~Sv~~A----l~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er 138 (200)
++|...--| ...|.+.++++.++++. +|.+ ..-+....|+..||.+.
T Consensus 94 ~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~l 144 (149)
T 1zzw_A 94 VSRSATIVIAYLMKHTRMTMTDAYKFVKGK-RPII-----SPNLNFMGQLLEFEEDL 144 (149)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCcc-----CCCHHHHHHHHHHHHHH
Confidence 588876433 24799999999999985 4432 12346899999999874
No 8
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=43.27 E-value=28 Score=25.45 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=36.7
Q ss_pred CceEEEE--eCHHHHHH-H---HHcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHh
Q 029030 79 PNLIVGA--ITKESLYN-A---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 137 (200)
Q Consensus 79 Pnlvvg~--lTR~Sv~~-A---l~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~E 137 (200)
|-+|=+. ++|...-- | ...|.+.++.+++++.. +|.+ ..-+....|++.||.+
T Consensus 83 ~VlVHC~~G~~RS~~~~~aylm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~ 141 (144)
T 3ezz_A 83 RVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQR-RSII-----SPNFSFMGQLLQFESQ 141 (144)
T ss_dssp CEEEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTT-CTTC-----CCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHH-CCcc-----CCCHhHHHHHHHHHHH
Confidence 4455553 67877433 3 25899999999999974 4432 2234789999999975
No 9
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=41.56 E-value=23 Score=26.01 Aligned_cols=25 Identities=12% Similarity=0.513 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcC
Q 029030 88 KESLYNAFENGITAEQIISFLQQNA 112 (200)
Q Consensus 88 R~Sv~~Al~~GITA~QII~fL~~ha 112 (200)
|.-|++-++.|=|-+||++||...-
T Consensus 46 R~~Vre~l~~G~Sd~eI~~~mv~RY 70 (90)
T 2kw0_A 46 RQKVYELMQEGKSKKEIVDYMVARY 70 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 7789999999999999999998753
No 10
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=41.46 E-value=23 Score=25.54 Aligned_cols=24 Identities=13% Similarity=0.556 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhc
Q 029030 88 KESLYNAFENGITAEQIISFLQQN 111 (200)
Q Consensus 88 R~Sv~~Al~~GITA~QII~fL~~h 111 (200)
|.-|++-+..|=|-+||++||...
T Consensus 49 R~~V~~~l~~G~sd~eI~~~~v~R 72 (84)
T 2hl7_A 49 RKQIYGQLQQGKSDGEIVDYMVAR 72 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 778999999999999999999874
No 11
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=41.33 E-value=12 Score=30.15 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=49.2
Q ss_pred hhccCceEEEEeCHHHHHHHHHcCCCH-HHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhcCceEecceeeeccCC
Q 029030 75 EYQLPNLIVGAITKESLYNAFENGITA-EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 153 (200)
Q Consensus 75 ~~r~Pnlvvg~lTR~Sv~~Al~~GITA-~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er~R~~~~~g~L~~~f~ 153 (200)
.+.+|.+.+|-|=|+.+ +.|-.- .++-.++.+ +..+|..++.++-. +|+.-.+|++++.|+
T Consensus 23 ~~g~~~istGdllR~~i----~~~t~lg~~~~~~~~~---------G~lvpd~iv~~lv~-----~~l~~~~~~ilDGfP 84 (206)
T 3sr0_A 23 EKGFVHISTGDILREAV----QKGTPLGKKAKEYMER---------GELVPDDLIIALIE-----EVFPKHGNVIFDGFP 84 (206)
T ss_dssp HHCCEEEEHHHHHHHHH----HHTCHHHHHHHHHHHH---------TCCCCHHHHHHHHH-----HHCCSSSCEEEESCC
T ss_pred HHCCeEEcHHHHHHHHH----HhcChhhhhHHHHHhc---------CCcCCHHHHHHHHH-----HhhccCCceEecCCc
Confidence 45688888886655544 444322 334444444 45899998877642 344556899999998
Q ss_pred CH-HHHHHHHHHHHHcCe
Q 029030 154 SR-DVFEAACDYARDRSG 170 (200)
Q Consensus 154 s~-~~f~~v~~ya~~~g~ 170 (200)
-. ++.+.+-+...+.|.
T Consensus 85 Rt~~Qa~~l~~~l~~~~~ 102 (206)
T 3sr0_A 85 RTVKQAEALDEMLEKKGL 102 (206)
T ss_dssp CSHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhhHHHhcc
Confidence 75 555666666666553
No 12
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=39.82 E-value=39 Score=22.72 Aligned_cols=46 Identities=9% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHcCeEe-eecCC-----cceEEEeccccHHHHHHHhhc
Q 029030 153 PSRDVFEAACDYARDRSGLL-WEDSK-----KMRLVVNAEIHMHMREFLRGQ 198 (200)
Q Consensus 153 ~s~~~f~~v~~ya~~~g~ll-w~~~~-----~r~~~V~~~~~~~v~~f~k~~ 198 (200)
.+.+..+.+.+.++..++-. |..+. .-.++|+++..+.+++++++.
T Consensus 9 ~~~~q~~~L~~L~~~~~~df~W~~~~~~~~~~~di~V~p~~~~~f~~~L~~~ 60 (79)
T 1vjq_A 9 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 60 (79)
T ss_dssp CSHHHHHHHHHHHTSCCTTCEESSCCCSTTCCEEEEECGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCceEEEcCCCCCCCCCcEEEEECHHHHHHHHHHHHHC
Confidence 45667777777777777778 98663 346899999999999999864
No 13
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=39.48 E-value=14 Score=27.11 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=29.1
Q ss_pred CHHHHHHHHHcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHH
Q 029030 87 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIR 132 (200)
Q Consensus 87 TR~Sv~~Al~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~ 132 (200)
.|+-+++. ..+|-+++++.+..+|+ ..||+.|...+.
T Consensus 46 ~r~~i~~~--~~vt~~~L~~~I~P~Ar-------~~VP~~VK~Ell 82 (96)
T 3mhs_B 46 TKSEMNIN--ESTNFTQILSTVEPKAL-------EMVSDSTRETVL 82 (96)
T ss_dssp HHHHHHHH--TCCCHHHHHHHHHHHHH-------HTSCHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHhHHHH-------HHCCHHHHHHHH
Confidence 34455444 79999999999999997 589999877653
No 14
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=37.48 E-value=66 Score=23.46 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=37.0
Q ss_pred cCceEEEE--eCHHH-HHHH---HHcCCCHHHHHHHHhhcCCccccccCCCCC-ccHHHHHHHHHHh
Q 029030 78 LPNLIVGA--ITKES-LYNA---FENGITAEQIISFLQQNAHPRVADRIPSVP-ENVCDQIRLWESD 137 (200)
Q Consensus 78 ~Pnlvvg~--lTR~S-v~~A---l~~GITA~QII~fL~~haHp~m~~~~~~iP-~tV~dQI~lWe~E 137 (200)
-|-+|=+. ++|.. +-.| ...|.+.++++.++++.- | +-| +....|+..||.+
T Consensus 86 ~~vlVHC~aG~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R-~-------i~pn~~f~~qL~~~e~~ 144 (151)
T 2e0t_A 86 GKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR-G-------IIPNRGFLRQLLALDRR 144 (151)
T ss_dssp CCEEEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTS-C-------SCCCHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHcC-C-------CCCCHHHHHHHHHHHHH
Confidence 34444432 58888 5555 357999999999999842 3 233 4789999999976
No 15
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=37.35 E-value=37 Score=24.83 Aligned_cols=46 Identities=9% Similarity=0.231 Sum_probs=31.9
Q ss_pred eCHHH-HHHHH---HcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHh
Q 029030 86 ITKES-LYNAF---ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 137 (200)
Q Consensus 86 lTR~S-v~~Al---~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~E 137 (200)
++|.. +--|. ..|.+.++.+.++++. +|.+ ..-+....|+..||..
T Consensus 92 ~~RS~~~v~ayLm~~~~~~~~~A~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~ 141 (145)
T 2nt2_A 92 VSRSASTVIAYAMKEYGWNLDRAYDYVKER-RTVT-----KPNPSFMRQLEEYQGI 141 (145)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHH
Confidence 58885 33332 4799999999999984 3321 1233689999999975
No 16
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=36.29 E-value=25 Score=26.32 Aligned_cols=110 Identities=12% Similarity=0.034 Sum_probs=62.7
Q ss_pred EEEeeCceEEEecC-CHhHHHHHHHhh-hhhhccCceEEEEeCHHHHHHHHHc--CCCHHHHHHHHhhcCCccccccCCC
Q 029030 47 VVVETNFRMYAYST-SKLHCEILRLFS-KIEYQLPNLIVGAITKESLYNAFEN--GITAEQIISFLQQNAHPRVADRIPS 122 (200)
Q Consensus 47 IIvETNFrvYAYT~-s~l~iaiL~lF~-~l~~r~Pnlvvg~lTR~Sv~~Al~~--GITA~QII~fL~~haHp~m~~~~~~ 122 (200)
++|.||.=|+.+.. .+.+-...+++. .+...-..+++..++-..+...+.+ | .+.+.+..|..... ..+
T Consensus 3 i~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~-~~~~~l~~l~~~~~------~~v 75 (156)
T 1w8i_A 3 ALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKL-PADKFLEGFVESGV------LNI 75 (156)
T ss_dssp EEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTC-CHHHHHHHHTTTSS------SEE
T ss_pred EEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHH-HHHHHHHHHhhCCC------eEE
Confidence 68999998888876 566666667666 5543234567777777777666654 4 56666666532111 135
Q ss_pred CCccHHHHHHHHHHhc-C-c---eEecceeeeccCCCHHHHHHHHHHHHHcCeEeeecC
Q 029030 123 VPENVCDQIRLWESDL-N-R---VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS 176 (200)
Q Consensus 123 iP~tV~dQI~lWe~Er-~-R---~~~~~g~L~~~f~s~~~f~~v~~ya~~~g~llw~~~ 176 (200)
+|.+-.+-.+-|+.-. . + +.+.|+ .++..|+..|+.++..+
T Consensus 76 ~~~~~~~~~~A~~l~~~~~~~~~l~~~Da-------------li~A~A~~~g~~l~T~D 121 (156)
T 1w8i_A 76 IYTDDEVERKALEVFKARVYEKGFSYTDA-------------ISEVVAEELKLKLISYD 121 (156)
T ss_dssp ECCCHHHHHHHHHHHHHTTTSTTCCHHHH-------------HHHHHHHHHTCEEECSC
T ss_pred EeCCHHHHHHHHHHHHHHhccCCCCHhHH-------------HHHHHHHHcCCEEEEeC
Confidence 5554333333333322 1 1 222221 12466777888888765
No 17
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=31.92 E-value=87 Score=22.88 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=33.0
Q ss_pred eCHHHHHH-H-H--HcCCCHHHHHHHHhhcCCccccccCCCCC-ccHHHHHHHHHHh
Q 029030 86 ITKESLYN-A-F--ENGITAEQIISFLQQNAHPRVADRIPSVP-ENVCDQIRLWESD 137 (200)
Q Consensus 86 lTR~Sv~~-A-l--~~GITA~QII~fL~~haHp~m~~~~~~iP-~tV~dQI~lWe~E 137 (200)
++|...-- | + ..|.+.++++.++++. +|. +.| +....|+..||..
T Consensus 101 ~~RS~~~~~ayl~~~~~~~~~~a~~~v~~~-R~~------~~pn~~f~~qL~~~e~~ 150 (154)
T 2r0b_A 101 ISRSAAFVIAYIMETFGMKYRDAFAYVQER-RFC------INPNAGFVHQLQEYEAI 150 (154)
T ss_dssp SSHHHHHHHHHHHHHHTCCHHHHHHHHHHH-STT------CCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCc------cCCCHHHHHHHHHHHHH
Confidence 58988533 3 2 4799999999999985 332 233 4799999999964
No 18
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=30.12 E-value=51 Score=24.93 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=33.2
Q ss_pred eCHH-HHHHH---HHcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHh
Q 029030 86 ITKE-SLYNA---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 137 (200)
Q Consensus 86 lTR~-Sv~~A---l~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~E 137 (200)
++|. ++--| ...|.+.++.+.++++. +|.+ ..-+....|+..||.+
T Consensus 98 ~sRS~~vv~ayLm~~~~~s~~~A~~~v~~~-Rp~i-----~pn~~f~~qL~~~e~~ 147 (161)
T 3emu_A 98 VNKAPAIVIAFLMYYQRLSFINAFNKVQGL-YPLI-----DIESGFILQLKLFEKK 147 (161)
T ss_dssp SSHHHHHHHHHHHHHTTCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHH
Confidence 6885 34334 25899999999999984 4432 2235789999999976
No 19
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=28.60 E-value=28 Score=25.77 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHhhcCCccccccCCCCCccHHHHHH
Q 029030 98 GITAEQIISFLQQNAHPRVADRIPSVPENVCDQIR 132 (200)
Q Consensus 98 GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~ 132 (200)
.+|-+++++.+..+|+ ..||+.|...+.
T Consensus 61 ~vt~~~L~~~I~P~Ar-------~~VP~~VK~Ell 88 (101)
T 4dhx_B 61 HVTVDDLVAEITPKGR-------ALVPDSVKKELL 88 (101)
T ss_dssp TCCHHHHHHHHHHHHH-------HHSCHHHHHHHH
T ss_pred CCCHHHHHHHHhHHHH-------HHCCHHHHHHHH
Confidence 5999999999999997 579999876653
No 20
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=28.52 E-value=1.2e+02 Score=22.55 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=33.7
Q ss_pred eCHHHHH-HH-H--HcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhcC
Q 029030 86 ITKESLY-NA-F--ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLN 139 (200)
Q Consensus 86 lTR~Sv~-~A-l--~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er~ 139 (200)
++|...- -| + ..|.+.++++.++++. .|.+ ...+....|+..||.+..
T Consensus 96 ~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~~~ 147 (155)
T 2hxp_A 96 VSRSVTVTVAYLMQKLHLSLNDAYDLVKRK-KSNI-----SPNFNFMGQLLDFERSLR 147 (155)
T ss_dssp SSHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CSCC-----CCCHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHHhh
Confidence 5888743 23 2 4799999999999884 3321 123478999999998753
No 21
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=27.74 E-value=43 Score=28.04 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=61.8
Q ss_pred cceEEEeeCceEEEecCCHhHHHHHHHhhhhhhccCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHhhcCC
Q 029030 44 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAH 113 (200)
Q Consensus 44 ~g~IIvETNFrvYAYT~s~l~iaiL~lF~~l~~r~Pnlvvg---~lTR~Sv~~Al~~GI-------TA~QII~fL~~haH 113 (200)
.|.=.||--++ +|-.. ..+.++..++|++++| ++|.+.++.|++.|- +-.+++.+.+.+--
T Consensus 58 gGi~~iEvt~~------t~~a~---e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~~~gi 128 (232)
T 4e38_A 58 NGLPAAEITFR------SDAAV---EAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPGFNPNTVRACQEIGI 128 (232)
T ss_dssp TTCCEEEEETT------STTHH---HHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTC
T ss_pred CCCCEEEEeCC------CCCHH---HHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCC
Confidence 36667887666 34333 4445556678999999 899999999999984 34567777666533
Q ss_pred ccccccCCCCCc--cHHHHHHHHHHhcCceEecce
Q 029030 114 PRVADRIPSVPE--NVCDQIRLWESDLNRVEMTPA 146 (200)
Q Consensus 114 p~m~~~~~~iP~--tV~dQI~lWe~Er~R~~~~~g 146 (200)
|.+|- |..+=.+-|+.--+-+++.++
T Consensus 129 -------~~ipGv~TptEi~~A~~~Gad~vK~FPa 156 (232)
T 4e38_A 129 -------DIVPGVNNPSTVEAALEMGLTTLKFFPA 156 (232)
T ss_dssp -------EEECEECSHHHHHHHHHTTCCEEEECST
T ss_pred -------CEEcCCCCHHHHHHHHHcCCCEEEECcC
Confidence 33342 777778889988888988775
No 22
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=26.74 E-value=55 Score=27.13 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHHhhhhhhcc-----CceEEEEeCHHHHHHHHHcCC
Q 029030 66 EILRLFSKIEYQL-----PNLIVGAITKESLYNAFENGI 99 (200)
Q Consensus 66 aiL~lF~~l~~r~-----Pnlvvg~lTR~Sv~~Al~~GI 99 (200)
.+..+|.++--+- -+-.||+|||.-+.+|+..-.
T Consensus 210 ~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~~~~ 248 (250)
T 2d4z_A 210 KTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIEGSY 248 (250)
T ss_dssp HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC--
T ss_pred HHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence 5667888776433 356899999999999998543
No 23
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=23.65 E-value=1.4e+02 Score=22.72 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=34.8
Q ss_pred eCHHHHHHH---H-HcCCCHHHHHHHHhhcCCccccccCCCCC-ccHHHHHHHHHHhcC
Q 029030 86 ITKESLYNA---F-ENGITAEQIISFLQQNAHPRVADRIPSVP-ENVCDQIRLWESDLN 139 (200)
Q Consensus 86 lTR~Sv~~A---l-~~GITA~QII~fL~~haHp~m~~~~~~iP-~tV~dQI~lWe~Er~ 139 (200)
++|...--| + ..|.+.+++++++++. +|. +.| +....|+..||.+..
T Consensus 98 ~~RSg~~v~ayLm~~~~~~~~~A~~~v~~~-Rp~------~~pn~~f~~qL~~~e~~l~ 149 (177)
T 2oud_A 98 VSRSATIVIAYLMKHTRMTMTDAYKFVKGK-RPI------ISPNLNFMGQLLEFEEDLN 149 (177)
T ss_dssp SSHHHHHHHHHHHHTSCCCHHHHHHHHHHH-CTT------CCCCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCCHHHHHHHHHHH-CCC------cCCCHHHHHHHHHHHHHHh
Confidence 688877533 1 4799999999999984 332 334 478999999998743
No 24
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Probab=22.50 E-value=1.7e+02 Score=22.89 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=32.8
Q ss_pred eCHHHHH-HH---HHcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhc
Q 029030 86 ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 138 (200)
Q Consensus 86 lTR~Sv~-~A---l~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er 138 (200)
++|...- -| ...|.+.++.+.++++. .| + ..-+....|+..||.+.
T Consensus 142 ~sRS~tvv~aYLm~~~~~s~~~A~~~vr~~-R~-i-----~pn~gf~~qL~~~e~~l 191 (205)
T 2pq5_A 142 VSRSATLVLAFLMIYENMTLVEAIQTVQAH-RN-I-----CPNSGFLRQLQVLDNRL 191 (205)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHTTT-SC-C-----CCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHc-CC-C-----CCCHHHHHHHHHHHHHH
Confidence 5888743 33 25799999999999874 23 1 12246899999999763
No 25
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=22.35 E-value=1.1e+02 Score=22.84 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=32.9
Q ss_pred eCHHHHH-HH---HHcCCCHHHHHHHHhhcCCccccccCCCCC-ccHHHHHHHHHHh
Q 029030 86 ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRIPSVP-ENVCDQIRLWESD 137 (200)
Q Consensus 86 lTR~Sv~-~A---l~~GITA~QII~fL~~haHp~m~~~~~~iP-~tV~dQI~lWe~E 137 (200)
++|...- .| ...|.+.++.+.++++. +|. ..| +....|+..||.+
T Consensus 100 ~~RSg~~~~ayLm~~~~~~~~~A~~~v~~~-R~~------~~pn~~f~~qL~~~e~~ 149 (164)
T 2hcm_A 100 RSRSAAVCTAYLMRHRGHSLDRAFQMVKSA-RPV------AEPNLGFWAQLQKYEQT 149 (164)
T ss_dssp SHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-CTT------CCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCHHHHHHHHHHH-CCC------cCCCHHHHHHHHHHHHH
Confidence 5788743 23 25799999999999984 332 233 4799999999976
No 26
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=21.53 E-value=1.2e+02 Score=22.44 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=37.1
Q ss_pred cCceEEEE--eCHHHH-HHHH---HcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhc
Q 029030 78 LPNLIVGA--ITKESL-YNAF---ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 138 (200)
Q Consensus 78 ~Pnlvvg~--lTR~Sv-~~Al---~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er 138 (200)
-|-+|=+. ++|... --|+ ..|.+.++++.++++. +|.+ ...+...+|+..||.+.
T Consensus 85 ~~VlVHC~aG~~RSg~~~~aylm~~~~~~~~~a~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~~ 145 (160)
T 1yz4_A 85 GNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKAT-RPIA-----NPNPGFRQQLEEFGWAS 145 (160)
T ss_dssp CCEEEEETTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHT-CTTC-----CCCHHHHHHHHHHHHTH
T ss_pred CeEEEECCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHHh
Confidence 34455442 589873 3332 4699999999999974 4432 22357999999999753
No 27
>3sdo_A Nitrilotriacetate monooxygenase; seattle structural genomics center for infectious disease, S oxidoreductase; 2.00A {Burkholderia pseudomallei} SCOP: c.1.16.0
Probab=21.03 E-value=1.4e+02 Score=27.09 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHcCCCHHHHHHHHhh-cC----CccccccCCCCCccHHHHHHHHHHhcCceEecceeeeccCCCHHHHHHHHHH----
Q 029030 94 AFENGITAEQIISFLQQ-NA----HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY---- 164 (200)
Q Consensus 94 Al~~GITA~QII~fL~~-ha----Hp~m~~~~~~iP~tV~dQI~lWe~Er~R~~~~~g~L~~~f~s~~~f~~v~~y---- 164 (200)
|-..|.|..|++..+.. .. |+.+. +=|++|.|||.-|-.+.. .+|+.+.--.....++..++.
T Consensus 344 ~~~~~~t~r~l~~~~~~~~~~~g~~~~~v----Gtp~~vAd~l~~w~~~~~----~DGf~l~~~~~p~~l~~f~~~vvP~ 415 (453)
T 3sdo_A 344 ARERKLTLREVAYEVSTRRSNIGTSEAFI----GTPEAVASEMIRWVDEGA----ADGFMLGLPVTGFGLDDFVDHVLPV 415 (453)
T ss_dssp HHHTTCBHHHHHHHHHHHHHCTTCCGGGE----ECHHHHHHHHHHHHHTTS----CSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHhcccCccCCCceEe----eCHHHHHHHHHHHHhccC----CCeEEEcCCCChhHHHHHHHhhhHH
Confidence 44568999999987652 22 65443 569999999999977665 688877433334555555544
Q ss_pred HHHcC
Q 029030 165 ARDRS 169 (200)
Q Consensus 165 a~~~g 169 (200)
-++.|
T Consensus 416 Lq~RG 420 (453)
T 3sdo_A 416 LSARG 420 (453)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 45666
No 28
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: b.91.1.1
Probab=20.95 E-value=1.1e+02 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhcC
Q 029030 102 EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLN 139 (200)
Q Consensus 102 ~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er~ 139 (200)
|||+...++.++ ++.|||.-|+.=|.
T Consensus 20 e~ll~lyE~dS~------------~L~dqI~yW~lvR~ 45 (218)
T 1tue_B 20 DKIIDHYENDSK------------DIDSQIQYWQLIRW 45 (218)
T ss_dssp HHHHHHHHHCCC------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc------------cHHHHHHHHHHHHH
Confidence 789999999875 79999999997664
No 29
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=20.74 E-value=91 Score=25.17 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=34.1
Q ss_pred eCHHHHH-HH---HHcCCCHHHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhcC
Q 029030 86 ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLN 139 (200)
Q Consensus 86 lTR~Sv~-~A---l~~GITA~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er~ 139 (200)
++|...- -| ...|.+.++.+.+++.. +|.+ ..-+....|+..||.+..
T Consensus 94 ~sRSgtvv~AYLm~~~g~s~~eAl~~vr~~-Rp~i-----~pN~~f~~qL~~~e~~l~ 145 (211)
T 2g6z_A 94 ISRSPTICMAYLMKTKQFRLKEAFDYIKQR-RSMV-----SPNFGFMGQLLQYESEIL 145 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHHHh
Confidence 5888642 22 24799999999999985 4321 123478999999998854
No 30
>2nnu_A Regulatory protein E2; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Human papillomavirus type 16} SCOP: b.91.1.1 PDB: 1dto_A
Probab=20.62 E-value=1.2e+02 Score=25.31 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCccccccCCCCCccHHHHHHHHHHhcC
Q 029030 102 EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLN 139 (200)
Q Consensus 102 ~QII~fL~~haHp~m~~~~~~iP~tV~dQI~lWe~Er~ 139 (200)
|||+...++.++ ++.|||.-|+.=|.
T Consensus 17 e~ll~lyE~ds~------------~L~dqI~~W~lvR~ 42 (205)
T 2nnu_A 17 DKILTHYENDST------------DLRDHIDYWKHMRL 42 (205)
T ss_dssp HHHHHHHHHCCC------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc------------cHHHHHHHHHHHHH
Confidence 789999999875 79999999997664
Done!