BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029035
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IZN|A Chain A, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|1IZN|C Chain C, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|3LK2|A Chain A, Crystal Structure Of Capz Bound To The Uncapping Motif
From Carmil
pdb|3LK3|A Chain A, Crystal Structure Of Capz Bound To The Cpi And Csi
Uncapping Motifs From Carmil
pdb|3LK4|A Chain A, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|D Chain D, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|G Chain G, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|J Chain J, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|M Chain M, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|P Chain P, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|S Chain S, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|V Chain V, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Y Chain Y, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|1 Chain 1, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|4 Chain 4, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|7 Chain 7, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|2KZ7|A Chain A, Solution Structure Of The Carmil Cah3aB DOMAIN BOUND TO
CAPPING Protein (Cp)
pdb|3AA0|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Carmil
pdb|3AA1|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Ckip-1
pdb|3AA6|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Cd2ap
pdb|3AA7|A Chain A, Crystal Structure Of Actin Capping Protein
pdb|3AAA|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
V-1
pdb|3AAE|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|E Chain E, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|G Chain G, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|I Chain I, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
Length = 286
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
+ P TAQVA V ++ HY+E+GNVQL + + DS S +A I+ + E
Sbjct: 181 ITPPTAQVAAV---LKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAEN 237
Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
EY ++ +Y + D TFK LRR+LPVTRT W+ + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 4 EVELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMIC 63
E ++ ++K IA F+ ++P GE V D+RL+LN++ + E + +F YN
Sbjct: 5 EDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTP 64
Query: 64 LQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
+++ VL+T G+LG +LDPR DH+++
Sbjct: 65 VKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRK 103
>pdb|2KXP|A Chain A, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 275
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
+ P TAQVA V ++ HY+E+GNVQL + + DS S +A I+ + E
Sbjct: 175 ITPPTAQVAAV---LKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAEN 231
Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTR 190
EY ++ +Y + D TFK LRR+LPVTRT W+ + + +
Sbjct: 232 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 275
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 7 LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM 66
++ ++K IA F+ ++P GE V D+RL+LN++ + E + +F YN +++
Sbjct: 2 VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI 61
Query: 67 PAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
VL+T G+LG +LDPR DH+++
Sbjct: 62 EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRK 97
>pdb|4AKR|A Chain A, Crystal Structure Of The Cytoplasmic Actin Capping Protein
Cap32_34 From Dictyostelium Discoideum
pdb|4AKR|C Chain C, Crystal Structure Of The Cytoplasmic Actin Capping Protein
Cap32_34 From Dictyostelium Discoideum
Length = 281
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 14 EIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDV 73
+IA FLLN+P E V D+R +L + + + +F YN S M+ +Q G+
Sbjct: 9 QIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGSA-- 66
Query: 74 LVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
L+T GE+ NEYLDP+ QV DH+KQ
Sbjct: 67 LITKEGEISNNEYLDPKNKQVITYDHIKQ 95
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
QV HYFE+GNVQL+ + ++ +A++ + E +L+ +YS + D
Sbjct: 189 QVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGD 248
Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK 194
TFK LRR LP+ RT W F + E+ K
Sbjct: 249 TTFKALRRALPINRTKINWQKVKNFKIANELNK 281
>pdb|2OKX|A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
pdb|2OKX|B Chain B, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
Length = 956
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 17 KWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVT 76
+++ LN AGE LVL D D S F I + L+ PAG V +
Sbjct: 288 RYYSLNLAAGE--------HLVLVDITSSDHGGSSHFAI-DSEAAFTLRSPAGDNGVPLA 338
Query: 77 SFGELGENEYLDPRTAQVAIVDH 99
+ G ++EY+D R + DH
Sbjct: 339 TIGTFDQSEYIDHRPGRRMQTDH 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,128,506
Number of Sequences: 62578
Number of extensions: 249774
Number of successful extensions: 715
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 9
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (23.5 bits)