Query 029035
Match_columns 200
No_of_seqs 110 out of 215
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akr_A F-actin-capping protein 100.0 4.5E-74 1.5E-78 504.5 11.1 183 10-194 5-281 (281)
2 3aa0_A F-actin-capping protein 100.0 1.2E-65 4.1E-70 451.9 13.1 194 1-194 1-285 (286)
3 3aa0_B F-actin-capping protein 93.5 0.92 3.2E-05 38.8 11.4 66 10-83 3-69 (244)
4 3lk4_B F-actin-capping protein 92.8 0.67 2.3E-05 40.3 9.6 159 11-177 4-253 (277)
5 4akr_B F-actin-capping protein 91.1 1.9 6.6E-05 37.6 10.6 159 10-176 21-272 (290)
6 2nl9_A Fusion protein consisti 38.2 12 0.0004 29.1 1.4 27 150-176 44-70 (157)
7 2qkl_B SPAC19A8.12 protein, SP 35.8 13 0.00043 27.2 1.2 31 1-31 1-31 (95)
8 4akr_A F-actin-capping protein 30.6 24 0.00082 30.4 2.3 55 43-98 112-174 (281)
9 4hw4_A Induced myeloid leukemi 27.8 9.2 0.00032 30.0 -0.8 51 134-192 36-104 (157)
10 3pk1_A Induced myeloid leukemi 27.2 13 0.00043 30.3 -0.1 34 160-193 87-138 (189)
11 3sp7_A BCL-2-like protein 1; a 26.7 13 0.00045 29.6 -0.1 25 161-185 65-105 (172)
12 3mb2_B 4-oxalocrotonate tautom 24.4 62 0.0021 22.5 3.0 32 4-35 10-47 (72)
13 4aq3_A Apoptosis regulator BCL 23.5 24 0.00083 27.9 0.9 10 176-185 102-111 (169)
14 1vq8_G Acidic ribosomal protei 22.5 30 0.001 30.6 1.5 38 135-172 17-54 (348)
15 2zkr_g 60S acidic ribosomal pr 21.9 19 0.00065 31.4 0.0 37 136-172 12-48 (317)
No 1
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=100.00 E-value=4.5e-74 Score=504.50 Aligned_cols=183 Identities=36% Similarity=0.617 Sum_probs=168.5
Q ss_pred hhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEcCCCCCeEEEccccccCCCeeecC
Q 029035 10 KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDP 89 (200)
Q Consensus 10 ~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~~g~~~~viis~~n~l~~~~y~Dp 89 (200)
+||++||++||++||||||++|++|||.|++||.++++++++||++||++||+||++||.+ ||||+||+++++|||||
T Consensus 5 ~ek~~i~~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~~~~a~~~Yn~~q~~~v~~~g~~--viis~~n~l~~~ry~Dp 82 (281)
T 4akr_A 5 QELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGS--ALITKEGEISNNEYLDP 82 (281)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHTTCSCTTTTTTTHHHHHHHHHHHHTCEEEETTEE--EECCSTTEEETTEEEEG
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHccEEEEeCCCc--EEEeeccccCCCeEEcc
Confidence 7899999999999999999999999999999999999999999999999999999999953 99999999999999999
Q ss_pred CCCeEEEEecccc-------------------------------------------------------------------
Q 029035 90 RTAQVAIVDHVKQ------------------------------------------------------------------- 102 (200)
Q Consensus 90 ~~k~~f~~Dhl~~------------------------------------------------------------------- 102 (200)
+++++|.|||+++
T Consensus 83 ~~k~sF~~DHl~~~a~d~~~~~~~~~~~~e~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~NF 162 (281)
T 4akr_A 83 KNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAF 162 (281)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSCSCGGGHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEEEGGGT
T ss_pred CCCeEEEEeccCCEEcCcccccccCccchHHHHHHHHHHHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCccCcccc
Confidence 9999999999987
Q ss_pred ---------------------------eeeEEEeeceEEEeecccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 029035 103 ---------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVS 155 (200)
Q Consensus 103 ---------------------------v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~ 155 (200)
|+|||||||||||+++|+++.+++++++.++|++||+.|+++|++||++|+++
T Consensus 163 wnGrWrS~w~~~~~~~~~~l~~~G~I~V~vHYyEDGNVqL~s~k~~~~s~~~~~~~~~a~~iv~~I~~~E~~~q~~l~~~ 242 (281)
T 4akr_A 163 YSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNN 242 (281)
T ss_dssp EEEEEEEEEEEEECTTSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEEecCCCCeEEECCEEEEEEEEeecceEEEEeccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999
Q ss_pred hccCChhhhhhhhccCCCCCCcccCCccccchhhHHHhh
Q 029035 156 YSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK 194 (200)
Q Consensus 156 ~~~Lse~~FK~LRR~LPvTRsKi~W~ki~~yrlg~d~~~ 194 (200)
|++||+++||+||||||||||||||+||++||||+|+++
T Consensus 243 ~~~ls~~tfK~LRR~LPvTRtKidW~ki~~yrlg~d~~~ 281 (281)
T 4akr_A 243 YSTMGDTTFKALRRALPINRTKINWQKVKNFKIANELNK 281 (281)
T ss_dssp HHHHHHTTTTTTSCSSCTTSCCCCTTCC-----------
T ss_pred HHHhCHHHHHHhhccCCCCCCcccccccccchhhhhhcC
Confidence 999999999999999999999999999999999999964
No 2
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=100.00 E-value=1.2e-65 Score=451.90 Aligned_cols=194 Identities=33% Similarity=0.608 Sum_probs=175.6
Q ss_pred Ccc-cccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEcCCCCCeEEEcccc
Q 029035 1 MAE-EVELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFG 79 (200)
Q Consensus 1 m~~-~~~~s~~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~~g~~~~viis~~n 79 (200)
||+ +++||+++|++||.+||.+|||||+++|++||+.|++|+.++++.+++||++||++||+|+++||.+++||||+||
T Consensus 1 m~~~~~~ms~~~k~~ia~~ll~~aPPge~~~v~~Dl~~L~~dd~ll~~~l~~a~~~yn~dq~~pl~v~~~~~~~li~~yn 80 (286)
T 3aa0_A 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHG 80 (286)
T ss_dssp ------CCCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHTTCEECCTTSSSCEECCGGG
T ss_pred CCccccccChHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcceeEEecCCCCcEEEEecc
Confidence 888 6789999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred ccCCCeeecCCCCeEEEEecccc---------------------------------------------------------
Q 029035 80 ELGENEYLDPRTAQVAIVDHVKQ--------------------------------------------------------- 102 (200)
Q Consensus 80 ~l~~~~y~Dp~~k~~f~~Dhl~~--------------------------------------------------------- 102 (200)
++++++|+||+++++|+|||+++
T Consensus 81 ~~~~~~Y~dp~s~~~f~~Dh~~~~~~d~~~~~ps~~l~~~r~~~~~~l~~Y~~~~Y~~g~~sVY~~d~e~~~~~a~~I~~ 160 (286)
T 3aa0_A 81 DLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIES 160 (286)
T ss_dssp EEETTEEEETTTTEEEEEETTTTEEEEEEECCCCCTTHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCceeCcccCceEEeecccceeccCCCCCCchhhHHHHHHHHHHHHHHHHHHcCCCceEEEecccCCCceEEEEEEE
Confidence 99999999999999999999976
Q ss_pred ---------------------------------eeeEEEeeceEEEeecccccccccccCCcccHHHHHHHHHHHHHHHH
Q 029035 103 ---------------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYL 149 (200)
Q Consensus 103 ---------------------------------v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~a~~ivk~I~~~E~~~q 149 (200)
|++||||||||||+++|+++.++.++++.+.|++|++.|+++|++||
T Consensus 161 ~k~~~~nfw~G~W~Si~~~~v~~~~~~l~G~i~v~vHY~EdGNV~L~~~k~~~~~~~~~~~~~~a~~i~~~Ie~~E~~~~ 240 (286)
T 3aa0_A 161 HQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQ 240 (286)
T ss_dssp EEEEGGGTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCccccCceeeeEEEEEeccccceEEEEEEEEEEEecCceEEEeeccccccccccCChHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999888878899999999999999999
Q ss_pred HHHHHHhccCChhhhhhhhccCCCCCCcccCCccccchhhHHHhh
Q 029035 150 ASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK 194 (200)
Q Consensus 150 ~~L~e~~~~Lse~~FK~LRR~LPvTRsKi~W~ki~~yrlg~d~~~ 194 (200)
.+|++.|.+|++++||+|||+|||||+||+|+||++||||+||++
T Consensus 241 ~~L~e~y~~ls~~~fk~LRR~LPvtr~ki~W~ki~~y~lg~d~~~ 285 (286)
T 3aa0_A 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQN 285 (286)
T ss_dssp HHHHHHHHHHHHTHHHHHCCSSCTTSSCCCHHHHTC---------
T ss_pred HHHHHHHHHhhHHHHHHHhccCCccccccchhhhcceehhhhhcc
Confidence 999999999999999999999999999999999999999999975
No 3
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=93.48 E-value=0.92 Score=38.76 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEc-CCCCCeEEEccccccCC
Q 029035 10 KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELGE 83 (200)
Q Consensus 10 ~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~-~g~~~~viis~~n~l~~ 83 (200)
+++.+-+-.|+..=||-++..-+++|..|+++ +.+.+.. ..+|-..|.- +.....+|.|.||+.++
T Consensus 3 ~~~~d~aLdL~RRLpP~~ie~nl~~l~~L~Pd---l~edLLs-----sVDqPLki~~d~~~~k~yL~CdYNRDgD 69 (244)
T 3aa0_B 3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPS---LCEDLLS-----SVDQPLKIARDKVVGKDYLLCDYNRDGD 69 (244)
T ss_dssp HHHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG---GHHHHHH-----HSCCCCEEEEETTTTEEEEECGGGEETT
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHhChH---HHHHHHh-----ccCCcceEeeccccCCeeeeecccCCCc
Confidence 67789999999999999999999999999974 3333332 2344443333 33347799999999643
No 4
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=92.83 E-value=0.67 Score=40.29 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=95.9
Q ss_pred hHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEc-CCCCCeEEEccccccCC------
Q 029035 11 QKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELGE------ 83 (200)
Q Consensus 11 ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~-~g~~~~viis~~n~l~~------ 83 (200)
++.+-+=.|+..=||-.+.+=+++|..|+++ +.+.+..+ .+|-.-|.- +.....+|.|.||+.++
T Consensus 4 ~~~daaLdLlRRLpP~~ie~nl~~l~~L~P~---L~edLLss-----VDqPLki~~d~~~~k~yL~CDYNRDgDSYRSPw 75 (277)
T 3lk4_B 4 QQLDCALDLMRRLPPQQIEKNLSDLIDLVPS---LCEDLLSS-----VDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPW 75 (277)
T ss_dssp CHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG---GHHHHHHH-----SCCCCEEEEETTTTEEEEECGGGEETTEEECTT
T ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHhhChH---hHHHHHHh-----CCcCceEeEccccCCeeEeecccCCCccccCCC
Confidence 4688889999999999999999999999974 33344322 344443333 33346799999999643
Q ss_pred -CeeecCCCCeEEEEecccc------------------------------------------------------------
Q 029035 84 -NEYLDPRTAQVAIVDHVKQ------------------------------------------------------------ 102 (200)
Q Consensus 84 -~~y~Dp~~k~~f~~Dhl~~------------------------------------------------------------ 102 (200)
++|+-|-..-.|--++|++
T Consensus 76 SNkY~Ppl~dg~~PS~~LRkLEi~aN~aFd~Yr~lYYeGGvSSVYlWdld~gFagvvLiKK~~~~~~~~~G~WDSIHV~E 155 (277)
T 3lk4_B 76 SNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVE 155 (277)
T ss_dssp TCCEESCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTEEEEEEEEEEECCCGGGEEEEEEEEEEEE
T ss_pred cCCcCCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEecCCCeEEEEEEEecCCCccccccceeeeEEEE
Confidence 4555555544444444444
Q ss_pred ee-------eEEEeeceEE--Eeeccc--------------ccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHhccC
Q 029035 103 VG-------AHYFEEGNVQ--LDAKHE--------------CGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNL 159 (200)
Q Consensus 103 v~-------vHYyEdGNVq--L~s~k~--------------~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~~~~L 159 (200)
|. +||-=-.-|. |.+.++ .+.+..+.+...-...|=+.|++.|+.+-..|++-|=.=
T Consensus 156 v~~~~~~~~~~YklTSTVmL~l~~~~~~~g~~~LsGsltRq~e~~~~v~~~~~Hi~NiG~mVEdmE~~mRn~L~~VYFgK 235 (277)
T 3lk4_B 156 VQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGK 235 (277)
T ss_dssp EEC----CEEEEEEEEEEEEEEEECCSSSSEEEEEEEEEEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred EeeccCCceeEEEEeEEEEEEEEcCCCCcceEeeceeeeeeccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 11 3554333333 222221 112222333334566778999999999999999998765
Q ss_pred ChhhhhhhhccCCCCCCc
Q 029035 160 PDNTFKDLRRKLPVTRTL 177 (200)
Q Consensus 160 se~~FK~LRR~LPvTRsK 177 (200)
.......||..-|+.-.+
T Consensus 236 tkdIv~~lRs~~~~~~~~ 253 (277)
T 3lk4_B 236 TKDIVNGLRSIDAIPDNQ 253 (277)
T ss_dssp HHHHHHTTC---------
T ss_pred HHHHHHHhhcCCCchhhH
Confidence 566778999888887543
No 5
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=91.15 E-value=1.9 Score=37.61 Aligned_cols=159 Identities=15% Similarity=0.212 Sum_probs=98.5
Q ss_pred hhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEc-CCCCCeEEEccccccCC-----
Q 029035 10 KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELGE----- 83 (200)
Q Consensus 10 ~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~-~g~~~~viis~~n~l~~----- 83 (200)
+++..-+-.|+..=||-.+..-+++|..|.++ +.+.+... .+|-..|.- +.....+|.|.||+.++
T Consensus 21 ~~~~daaLdLlRRLpP~~ie~nL~~Li~L~Pd---l~edLLss-----VDqPLki~~d~~~~k~yL~CDYNRDGDSYRSP 92 (290)
T 4akr_B 21 EKQLSCCLDLMRRLPPSQIEDNLAGLLDLVPD---LTEDLLSS-----IDQPLKVAYDAVSKKDYLLCDYNRDADSYRSP 92 (290)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHCGG---GHHHHHHH-----CCCCCEEEEETTTTEEEEECGGGEETTEEECT
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHhhChH---hHHHHHHh-----CCCcceEeEccccCCeEEeecccCCCccccCC
Confidence 57788999999999999999999999999974 33333322 344443333 33346799999999643
Q ss_pred --CeeecCCCCeEEEEecccc-----------------------------------------------------------
Q 029035 84 --NEYLDPRTAQVAIVDHVKQ----------------------------------------------------------- 102 (200)
Q Consensus 84 --~~y~Dp~~k~~f~~Dhl~~----------------------------------------------------------- 102 (200)
++|+-|-..-.|--+.|++
T Consensus 93 wSNkY~Ppl~dg~~PS~~LRkLEi~aN~aFd~Yr~lYYeGGvSSVYlWdld~gFagvvLiKK~~~~~~~g~~~~G~WDSI 172 (290)
T 4akr_B 93 WSNKYDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCWDLDDNFAAVVLMKKTQDQSKKGQPMRGTWDSI 172 (290)
T ss_dssp TTCCEESCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTEEEEEEEEEEEEC------CEEEEEEEE
T ss_pred CCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEEecCCCceEEEEEEeccCccccccCCCCceeee
Confidence 4555554443443333333
Q ss_pred ----e------eeEEEeeceEE--Eeeccc--------------ccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 029035 103 ----V------GAHYFEEGNVQ--LDAKHE--------------CGDSTLFQSPDDSAISISNILRHHETEYLASLEVSY 156 (200)
Q Consensus 103 ----v------~vHYyEdGNVq--L~s~k~--------------~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~~ 156 (200)
| ++||==-.-|. |.+.++ .+.+..+++...-...|=+.|++.|+.+-..|++-|
T Consensus 173 HV~Ev~~~~~~~a~YklTSTVmL~L~t~~~~~g~~~LsGslTRq~e~~~~v~d~~~HI~NiG~mVEdmE~kmRn~L~eVY 252 (290)
T 4akr_B 173 HVVEVKLGKKDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIY 252 (290)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCCCceEEEEeEEEEEEEecCCCCCceEeeeeeeeeecccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 24551111111 211121 112223333344566788999999999999999998
Q ss_pred ccCChhhhhhhhccCCCCCC
Q 029035 157 SNLPDNTFKDLRRKLPVTRT 176 (200)
Q Consensus 157 ~~Lse~~FK~LRR~LPvTRs 176 (200)
=.=.....-.||-.-|+.-.
T Consensus 253 FgKtkdIv~~lRs~~~~~~~ 272 (290)
T 4akr_B 253 FGKTKEVVNTLRNATGNSEL 272 (290)
T ss_dssp HTHHHHHHHHHSCTTCCC--
T ss_pred hHHHHHHHHhhccCCcchhh
Confidence 75555566689888777653
No 6
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=38.17 E-value=12 Score=29.10 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=18.2
Q ss_pred HHHHHHhccCChhhhhhhhccCCCCCC
Q 029035 150 ASLEVSYSNLPDNTFKDLRRKLPVTRT 176 (200)
Q Consensus 150 ~~L~e~~~~Lse~~FK~LRR~LPvTRs 176 (200)
..+-+.+..+.+..|++|-++|.+|..
T Consensus 44 r~i~dele~~~~~~f~~~~~~l~i~~~ 70 (157)
T 2nl9_A 44 RRVGDGVQRNHETAFQGMLRKLDIKNE 70 (157)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 345566666777777777777776653
No 7
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=35.83 E-value=13 Score=27.20 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=22.9
Q ss_pred CcccccCChhhHHHHHHHHhhcCCCCcHHHH
Q 029035 1 MAEEVELNPKQKKEIAKWFLLNSPAGEIQYV 31 (200)
Q Consensus 1 m~~~~~~s~~ek~~ii~~fl~~aPPGE~~eV 31 (200)
|+...+..++--.+++++||.+.|+-|++++
T Consensus 1 ~~~~~~~~~~iLdDL~~RFIiN~P~eel~s~ 31 (95)
T 2qkl_B 1 MSFTNATFSQVLDDLSARFILNLPAEEQSSV 31 (95)
T ss_dssp -CCTTCCHHHHHHHHHHHHTTTCCGGGSSCH
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCHHHhhhH
Confidence 5543444456667899999999999998876
No 8
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=30.60 E-value=24 Score=30.36 Aligned_cols=55 Identities=20% Similarity=0.142 Sum_probs=37.2
Q ss_pred hhhHHHHhhhHHHHhhhcce-------eeEcCCCCCeEEEc-cccccCCCeeecCCCCeEEEEe
Q 029035 43 EVYDEAVSESFPIYNKSHMI-------CLQMPAGAGDVLVT-SFGELGENEYLDPRTAQVAIVD 98 (200)
Q Consensus 43 ~~~~~~i~~a~~~yn~~~~~-------~v~~~g~~~~viis-~~n~l~~~~y~Dp~~k~~f~~D 98 (200)
..+..++..+|..|-.++|. +...+|. ..++|| ..++.....||..+++..|.|+
T Consensus 112 e~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~-~~l~i~I~~~k~np~NFwnGrWrS~w~~~ 174 (281)
T 4akr_A 112 EQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEG-IKITVCISTCIYKPNAFYSGRWRSVWTCT 174 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTE-EEEEEEEEEEEEEGGGTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEecccCCCC-cEEEEEEEeCccCcccccCCceEEEEEEE
Confidence 34668889999999999883 2222332 223333 3556677889999988888887
No 9
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=27.76 E-value=9.2 Score=30.03 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhhhhhhhccCCCCC----------------Cc-ccCCcccc-chhhHHH
Q 029035 134 AISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTR----------------TL-FPWHNTSQ-FSLTREI 192 (200)
Q Consensus 134 a~~ivk~I~~~E~~~q~~L~e~~~~Lse~~FK~LRR~LPvTR----------------sK-i~W~ki~~-yrlg~d~ 192 (200)
.++++..+..+=++++ ..-+..|++|-++|.+|. .- +||++|.+ |-.|--+
T Consensus 36 ~~~~~~~Lr~vgdele--------~~~~~~f~~m~~~L~it~~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~l 104 (157)
T 4hw4_A 36 SRKALETLRRVGDGVQ--------RNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFV 104 (157)
T ss_dssp HHHHHHHHHHHHHHHH--------HHTHHHHHHHHHHHCCCSHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 4455555544333333 333445666666666553 23 59999544 4444333
No 10
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=27.20 E-value=13 Score=30.31 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=18.9
Q ss_pred ChhhhhhhhccCCCCCC----------------c-ccCCcccc-chhhHHHh
Q 029035 160 PDNTFKDLRRKLPVTRT----------------L-FPWHNTSQ-FSLTREIT 193 (200)
Q Consensus 160 se~~FK~LRR~LPvTRs----------------K-i~W~ki~~-yrlg~d~~ 193 (200)
-+..|++|.++|.+|.. - +||++|.+ |-.|--++
T Consensus 87 ~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGi~NWGRIVaLfaFgg~La 138 (189)
T 3pk1_A 87 HETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVA 138 (189)
T ss_dssp THHHHHHHHHHHTCCSTTCCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 34456666666666542 2 59999544 44444333
No 11
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=26.70 E-value=13 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=15.4
Q ss_pred hhhhhhhhccCCCCC----------------CcccCCcccc
Q 029035 161 DNTFKDLRRKLPVTR----------------TLFPWHNTSQ 185 (200)
Q Consensus 161 e~~FK~LRR~LPvTR----------------sKi~W~ki~~ 185 (200)
...|.+|.++|.+|. .-|||++|.+
T Consensus 65 ~~~f~~~~~qL~it~~~a~~~F~~Va~elF~dGinWGRIVa 105 (172)
T 3sp7_A 65 RRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVA 105 (172)
T ss_dssp GGGCSCHHHHTTCCTTCCHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 345666666666643 4589999544
No 12
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=24.39 E-value=62 Score=22.51 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=25.2
Q ss_pred cccCChhhHHHHHHHH------hhcCCCCcHHHHHHHH
Q 029035 4 EVELNPKQKKEIAKWF------LLNSPAGEIQYVAKDL 35 (200)
Q Consensus 4 ~~~~s~~ek~~ii~~f------l~~aPPGE~~eV~~Dl 35 (200)
+++.|.++|..++..+ ++.+|||-+.=|+.|+
T Consensus 10 ~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~EV 47 (72)
T 3mb2_B 10 DRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQIV 47 (72)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEec
Confidence 7889999999998865 6789999876555544
No 13
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=23.53 E-value=24 Score=27.94 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=7.2
Q ss_pred CcccCCcccc
Q 029035 176 TLFPWHNTSQ 185 (200)
Q Consensus 176 sKi~W~ki~~ 185 (200)
.-|||++|.+
T Consensus 102 dGiNWGRIVa 111 (169)
T 4aq3_A 102 DGVNWGRIVA 111 (169)
T ss_dssp TCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 4589999554
No 14
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=22.52 E-value=30 Score=30.60 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhhhhhhhccCC
Q 029035 135 ISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLP 172 (200)
Q Consensus 135 ~~ivk~I~~~E~~~q~~L~e~~~~Lse~~FK~LRR~LP 172 (200)
..+|..|++.=.+|+.-+.-.|.+|+-..++.|||.|.
T Consensus 17 ~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR 54 (348)
T 1vq8_G 17 QEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLH 54 (348)
T ss_dssp HHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 46788888888889999999999999999999999985
No 15
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.86 E-value=19 Score=31.42 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhhhhhhhccCC
Q 029035 136 SISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLP 172 (200)
Q Consensus 136 ~ivk~I~~~E~~~q~~L~e~~~~Lse~~FK~LRR~LP 172 (200)
.+|..|++.=.+|+.-+.-.|.+|+-.+++.|||.|-
T Consensus 12 ~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR 48 (317)
T 2zkr_g 12 NYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLR 48 (317)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHh
Confidence 5677787777889999999999999999999999985
Done!