BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029036
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQ6|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The
Saccharomyces Cerevisiae Ran-Binding Protein Mog1p
Length = 189
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 7 SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
E L+GGAI++ P F D S +R+VPD QEV+V+ RD ES+I +LL+
Sbjct: 5 KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE 64
Query: 56 FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGR 114
+D D A F ++DL L++ V + G ++ L V G+
Sbjct: 65 -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 121
Query: 115 QGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQSGFM 173
AQ +V + +A +RL + TDV+++ IN PL++ ++ + +PA
Sbjct: 122 ----AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARCHAVY 170
Query: 174 QMSEVFKLAVSSFKVNDWSLFG 195
Q+ + V F V D SLF
Sbjct: 171 QL---LQEMVRKFHVVDTSLFA 189
>pdb|1JHS|A Chain A, Protein Mog1 E65a Mutant
Length = 188
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 30/202 (14%)
Query: 7 SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
E L+GGAI++ P F D S +R+VPD Q V+V+ RD ES+I +LL+
Sbjct: 4 KEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLE 63
Query: 56 FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGR 114
+D D A F ++DL L++ V + G ++ L V G+
Sbjct: 64 -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 120
Query: 115 QGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQSGFM 173
AQ +V + +A +RL + TDV+++ IN PL++ ++ + +PA
Sbjct: 121 ----AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARCHAVY 169
Query: 174 QMSEVFKLAVSSFKVNDWSLFG 195
Q+ + V F V D SLF
Sbjct: 170 QL---LQEMVRKFHVVDTSLFA 188
>pdb|1VHO|A Chain A, Crystal Structure Of A Putative PeptidaseENDOGLUCANASE
Length = 346
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 5 LYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPS 44
+Y++ + G I PH QD + ++VP + E+FVD S
Sbjct: 103 IYTKNGIERGVIGXLAPH-LQDSESRKKVPTYDEIFVDLS 141
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 129 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 182
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 30 NLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAKTTGFGTAEPAAPCGNEGLFEVIKVGS 89
Query: 183 -VSSFKVNDW 191
VSS + DW
Sbjct: 90 NVSSLEAGDW 99
>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|B Chain B, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|C Chain C, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
Length = 364
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 129 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 182
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 30 NLAPNEVIVKTLGSPVNPSDINQIQGVNPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGS 89
Query: 183 -VSSFKVNDW 191
VSS + DW
Sbjct: 90 NVSSLEAGDW 99
>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GU7|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
Length = 364
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 129 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 182
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 30 NLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGS 89
Query: 183 -VSSFKVNDW 191
VSS + DW
Sbjct: 90 NVSSLEAGDW 99
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 129 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 182
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 52 NLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAKTTGFGTAEPAAPCGNEGLFEVIKVGS 111
Query: 183 -VSSFKVNDW 191
VSS + DW
Sbjct: 112 NVSSLEAGDW 121
>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 129 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 182
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 52 NLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGS 111
Query: 183 -VSSFKVNDW 191
VSS + DW
Sbjct: 112 NVSSLEAGDW 121
>pdb|3IMM|A Chain A, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
pdb|3IMM|B Chain B, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
pdb|3IMM|C Chain C, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
Length = 201
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 9 RPLFGGAISSSF--PHRFQDVSNIRQVPDHQEVFVDPSRDESLIFEL-LDFKLDVGDNGS 65
+PLFG + ++ P + + + + ++ ++DE FEL LDFK DVG N
Sbjct: 8 KPLFGKNLENANYNPEVWSETDGVLGAVKDESIW---TKDEYENFELDLDFKTDVGTNSG 64
Query: 66 AAWFLQD 72
+ D
Sbjct: 65 VVVYCTD 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,750,187
Number of Sequences: 62578
Number of extensions: 225046
Number of successful extensions: 558
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 12
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)