Query 029036
Match_columns 200
No_of_seqs 111 out of 190
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eq6_A MOG1P; alpha-beta, prot 100.0 1E-59 3.6E-64 389.0 12.3 172 7-195 5-189 (189)
2 3gio_A Putative uncharacterize 45.3 7.1 0.00024 30.8 1.2 32 34-78 127-158 (186)
3 2wcr_A TNF-alpha inducer prote 39.3 9.5 0.00032 29.4 1.0 32 34-78 100-131 (159)
4 4dov_A ORC1, origin recognitio 17.8 53 0.0018 25.8 1.8 11 34-44 99-109 (163)
5 3nfg_B DNA-directed RNA polyme 16.6 69 0.0023 24.0 2.0 26 16-41 3-34 (123)
6 2vwa_A Putative uncharacterize 15.6 45 0.0016 23.8 0.8 14 64-77 33-46 (101)
7 3ijm_A Uncharacterized restric 14.8 1E+02 0.0034 23.7 2.5 56 13-71 46-104 (151)
8 2law_A Yorkie homolog; YAP, SM 13.5 1.2E+02 0.004 17.4 2.1 31 14-48 1-31 (38)
9 3clo_A Transcriptional regulat 11.2 43 0.0015 27.0 -0.5 18 23-41 120-137 (258)
10 1k3s_A SIGE; type III, secreti 11.1 1.4E+02 0.0047 21.8 2.2 18 118-137 73-90 (113)
No 1
>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A
Probab=100.00 E-value=1e-59 Score=388.97 Aligned_cols=172 Identities=27% Similarity=0.415 Sum_probs=134.4
Q ss_pred cccccccceeEeeCCCCCccccCccccCCcceEeecCC-----------CCceEEEEeeccccCCCchhHHHHHHHhhhc
Q 029036 7 SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPS-----------RDESLIFELLDFKLDVGDNGSAAWFLQDLAT 75 (200)
Q Consensus 7 ~~~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~-----------~d~SiIvElLE~v~~~~d~~A~~~Hf~Dla~ 75 (200)
++++||||||+|.||++|+|||+|||||||||||++++ +|+|||||||||+++++|.+|++|||+|||+
T Consensus 5 ~~~~LfGGAI~~~lP~~f~DvS~lRqVPDnQEVFv~~~~~~~~~~~~~~~d~SiIiElLE~v~~~~d~~A~~~hf~Dla~ 84 (189)
T 1eq6_A 5 KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDLTE 84 (189)
T ss_dssp EEEEEGGGTEEEEECTTEEEGGGTSCCCTTEEEEEECCCSSCCCSSSCCSCCEEEEEEEECCSCCSHHHHHHHHHHHHHG
T ss_pred ccccccCceEEeeCCCCccchhhcccCCCCcEEEEcCcccccccccccCCCceEEEEeecccCCcChHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred ccCCCCceEEeeceeeccCCCCCCCCCceEE-EEEeeecccC-ccccceEEEEEEEEEcCCCCeeEEEEEeccCcCCCCc
Q 029036 76 EQDAEGCTLLEQSGVVEAPGLRYKDLPATVT-TAVGQMGRQG-REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLS 153 (200)
Q Consensus 76 ~N~a~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~g~~~k~~-~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~~~~s 153 (200)
+|++..+.++. ...++. +.+.| ++.+...|++ ...+++|.||||||||++++||||||+|+|++.++.+
T Consensus 85 ~n~~~~~~v~~-~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~v~i~l~liRL~~~~TDiLIt~NvP~~~~~~~ 155 (189)
T 1eq6_A 85 LNGTTKWEALQ-EDTVQQ--------GTKFTGLVMEVANKWGKPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEAS 155 (189)
T ss_dssp GGTEEEEEEEE-EEEEET--------TTEEEEEEEEEEETTSCTTSSCCEEEEEEEEEEGGGTEEEEEEEEEECCHHHHH
T ss_pred cccCcceeEEe-ecccCC--------CCcceEEEEeeeeccCccccccceEEEEEEEecCCCCccEEEEEecCCCcchhh
Confidence 99976554433 334431 23344 3333334443 2357889999999999999999999999998533322
Q ss_pred ccccccCCCCCCCccccccccHHHHHHHhhheeeEecCCCCC
Q 029036 154 ESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG 195 (200)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~sf~V~D~sLF~ 195 (200)
.. + +...+ ..+..++++|+++++||+|+|||||+
T Consensus 156 ~~----~-~~~~~---~~~~~~~~~f~~~~~Sf~V~Dw~LF~ 189 (189)
T 1eq6_A 156 QA----S-NKELP---ARCHAVYQLLQEMVRKFHVVDTSLFA 189 (189)
T ss_dssp HH----T-TTCCC---HHHHHHHHHHHHHHHTCEESCGGGCC
T ss_pred cc----c-ccccc---hhhhHHHHHHHHHHhheEeechhccC
Confidence 21 1 11111 12233689999999999999999996
No 2
>3gio_A Putative uncharacterized protein; antiparallel beta sheet, four-helix bundle, loop, DNA binding protein; 2.40A {Helicobacter pylori}
Probab=45.31 E-value=7.1 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=19.9
Q ss_pred CCcceEeecCCCCceEEEEeeccccCCCchhHHHHHHHhhhcccC
Q 029036 34 PDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQD 78 (200)
Q Consensus 34 PDnQEVFv~~~~d~SiIvElLE~v~~~~d~~A~~~Hf~Dla~~N~ 78 (200)
|.|||||+ |=|++ .=+.+++..-+.+|+-+|.
T Consensus 127 PNN~EVFm------------LvRv~-gy~~~~L~~~L~~isLd~~ 158 (186)
T 3gio_A 127 PNNEEVFA------------LVRAR-GFDKDALSEGLHKMSLDNQ 158 (186)
T ss_dssp TTTTEEEE------------EEEEE-EECHHHHHHHHHTTTCCHH
T ss_pred CCCceeEE------------EEEec-cCCHHHHHHHHHHhhccHH
Confidence 99999998 33433 1234666666666655543
No 3
>2wcr_A TNF-alpha inducer protein; HP0596, TIP-alpha, immune system; 1.70A {Helicobacter pylori} PDB: 2wcq_A 3guq_A
Probab=39.34 E-value=9.5 Score=29.38 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=21.6
Q ss_pred CCcceEeecCCCCceEEEEeeccccCCCchhHHHHHHHhhhcccC
Q 029036 34 PDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQD 78 (200)
Q Consensus 34 PDnQEVFv~~~~d~SiIvElLE~v~~~~d~~A~~~Hf~Dla~~N~ 78 (200)
|.|||||. |=|+. .-+.+++..-+++|+-+|.
T Consensus 100 PNN~EVF~------------LvRv~-~y~~~~L~~~L~kisLdnq 131 (159)
T 2wcr_A 100 PNNEEVFA------------LVRAR-GFDKDALSEGLHKMSLDNQ 131 (159)
T ss_dssp TTTCCEEE------------EEEEE-EECHHHHHHHHHTTTCCHH
T ss_pred CCChheEE------------EEeec-cCCHHHHHHHHHHhhcchH
Confidence 99999998 33443 2345777777777765554
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=17.82 E-value=53 Score=25.76 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=9.0
Q ss_pred CCcceEeecCC
Q 029036 34 PDHQEVFVDPS 44 (200)
Q Consensus 34 PDnQEVFv~~~ 44 (200)
||.||||....
T Consensus 99 ~~~qEIF~~d~ 109 (163)
T 4dov_A 99 PPAQEIFWYDC 109 (163)
T ss_dssp CCTTEEEEECC
T ss_pred CCCCeEEEecC
Confidence 88999999543
No 5
>3nfg_B DNA-directed RNA polymerase I subunit RPA34; triple barrel, transcription, dimerization; 2.51A {Candida glabrata} PDB: 3nff_B
Probab=16.62 E-value=69 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.576 Sum_probs=22.6
Q ss_pred eEeeCCCCCccccCccccC------CcceEee
Q 029036 16 ISSSFPHRFQDVSNIRQVP------DHQEVFV 41 (200)
Q Consensus 16 It~~lP~~fiDvS~lRqVP------DnQEVFv 41 (200)
|...-|++|-=++.+...| +++|||+
T Consensus 3 ~~F~pP~~y~K~~~lk~f~~~~~~l~~KevWl 34 (123)
T 3nfg_B 3 MGYQPPSDYKQCKHLKSFPVSELKGDNKELWL 34 (123)
T ss_dssp -CCCCCTTEEECCSCBCCCGGGTTCTTEEEEE
T ss_pred ccccCCCCcccccchhhcccccccCCCcEEEE
Confidence 5567899999999999999 8899998
No 6
>2vwa_A Putative uncharacterized protein PF13_0012; unknown function; HET: PTY; 2.5A {Plasmodium falciparum}
Probab=15.57 E-value=45 Score=23.78 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=11.6
Q ss_pred hHHHHHHHhhhccc
Q 029036 64 GSAAWFLQDLATEQ 77 (200)
Q Consensus 64 ~A~~~Hf~Dla~~N 77 (200)
-|+++||++|..+.
T Consensus 33 la~qhHF~~LSn~Q 46 (101)
T 2vwa_A 33 LSIQKHFEHLSNDQ 46 (101)
T ss_dssp HHHHHHHHHSCHHH
T ss_pred HHHHHHHHhcCcHH
Confidence 48999999998754
No 7
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=14.76 E-value=1e+02 Score=23.71 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=38.8
Q ss_pred cceeEe-eCCCCCccccCccccCCcceEee--cCCCCceEEEEeeccccCCCchhHHHHHHH
Q 029036 13 GGAISS-SFPHRFQDVSNIRQVPDHQEVFV--DPSRDESLIFELLDFKLDVGDNGSAAWFLQ 71 (200)
Q Consensus 13 GGAIt~-~lP~~fiDvS~lRqVPDnQEVFv--~~~~d~SiIvElLE~v~~~~d~~A~~~Hf~ 71 (200)
-|+|.. -||...+|-+.=-.||| |-+ +.....-+|||+-.-..-..|-..++--.+
T Consensus 46 ~~~I~lePLPETmldeg~~spvPD---v~L~d~~~~~tpvIIEVc~~~G~K~D~~Kv~~LId 104 (151)
T 3ijm_A 46 SKKIPFEPLPETMLTEGYSSPVPD---VLLYDHQTEEAKVIIEVCQNSGLKHDTSKIVKLIE 104 (151)
T ss_dssp TTSSSSEEEESCCSSSSTTSCCCS---EEEEETTTTEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred cCccccccCCccccCCCCCCCCCC---EEEeccccccCcEEEEEecccccchhHHHHHHHHh
Confidence 466665 68999999999999999 333 345668999999877554444444443333
No 8
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=13.53 E-value=1.2e+02 Score=17.39 Aligned_cols=31 Identities=13% Similarity=0.426 Sum_probs=19.2
Q ss_pred ceeEeeCCCCCccccCccccCCcceEeecCCCCce
Q 029036 14 GAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDES 48 (200)
Q Consensus 14 GAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~~d~S 48 (200)
|.....||.+|.=.-+ ++.+--|+|..+.++
T Consensus 1 g~~~~~LP~gWe~~~~----~~G~~Yy~nh~t~~t 31 (38)
T 2law_A 1 GAMEGPLPDGWEQAMT----QDGEIYYINHKNKTT 31 (38)
T ss_dssp ----CCCSSSCCEEEE----TTTEEEEEETTTTEE
T ss_pred CCccCCCCCCcEEEEC----CCCCEEEEECCCCCE
Confidence 4556679999964433 678888888776543
No 9
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=11.16 E-value=43 Score=26.98 Aligned_cols=18 Identities=11% Similarity=0.460 Sum_probs=14.1
Q ss_pred CCccccCccccCCcceEee
Q 029036 23 RFQDVSNIRQVPDHQEVFV 41 (200)
Q Consensus 23 ~fiDvS~lRqVPDnQEVFv 41 (200)
.+.++.++| +|++||||+
T Consensus 120 ~~~~~~dl~-~~~~qe~fl 137 (258)
T 3clo_A 120 KYRGRCRLR-MMNEKGVYQ 137 (258)
T ss_dssp TEEEEEEEE-EECTTSCEE
T ss_pred CCeeeEEee-cCCcCHHHH
Confidence 455666776 889999998
No 10
>1k3s_A SIGE; type III, secretion, chaperone; 1.90A {Salmonella enterica} SCOP: d.198.1.1
Probab=11.14 E-value=1.4e+02 Score=21.85 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=12.8
Q ss_pred cccceEEEEEEEEEcCCCCe
Q 029036 118 EAQNIVKVYLANLRLKEVGT 137 (200)
Q Consensus 118 ~~~~~V~i~l~liRL~~~~T 137 (200)
++.++ ..+|+.|||+.+|
T Consensus 73 Da~~t--~L~Al~rlp~~s~ 90 (113)
T 1k3s_A 73 DADNT--ALVALYRLPQTST 90 (113)
T ss_dssp CTTSC--EEEEEEEEETTSC
T ss_pred cCCCc--eEEEeeecCCCCc
Confidence 45664 4589999998654
Done!