BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029039
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S6F|A Chain A, Crystal Structure Of A Hypotetical Acetyltransferase
(Dr_1678) From Deinococcus Radiodurans At 1.19 A
Resolution
Length = 145
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 121 LLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRM 180
+L A V+ TP +GQ++GF A+SD L ASI + V R +G+G + +R+L
Sbjct: 43 ILDRAAVFVLARTP-DGQVIGFVNALSDGILAASIPLLEVQAGWRSLGLGSELXRRVLTE 101
Query: 181 LTSREIYDIAALCSEE 196
L ++Y + C ++
Sbjct: 102 LG--DLYXVDLSCDDD 115
>pdb|1WK4|A Chain A, Crystal Structure Of Ttk003001606
pdb|1WK4|B Chain B, Crystal Structure Of Ttk003001606
pdb|1WK4|C Chain C, Crystal Structure Of Ttk003001606
pdb|2CY2|A Chain A, Crystal Structure Of Ttha1209 In Complex With Acetyl
Coenzyme A
Length = 174
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 111 DESSKRLMVPLLGNLAQRVVPVTPSNGQLVGFG-----RAVSDVGLTASIHDIMVIPSLR 165
+ ++RL P R+ +G++VGF RA G TA + I V+P+ +
Sbjct: 45 ERWAQRLKTP---TWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQ 101
Query: 166 QMGIGRMIVQRILRMLTS 183
+ G+GR + R+L +
Sbjct: 102 RKGLGRALFHEGARLLQA 119
>pdb|1Y7R|A Chain A, 1.7 A Crystal Structure Of Protein Of Unknown Function
Sa2161 From Meticillin-Resistant Staphylococcus Aureus,
Probable Acetyltransferase
pdb|1Y7R|B Chain B, 1.7 A Crystal Structure Of Protein Of Unknown Function
Sa2161 From Meticillin-Resistant Staphylococcus Aureus,
Probable Acetyltransferase
Length = 133
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 138 QLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRML 181
+L+G GR + D G I DI V+ S + G +I + I + +
Sbjct: 49 RLIGXGRVIGDGGTVFQIVDIAVLKSYQGQAYGSLIXEHIXKYI 92
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 110 DDESSKRLMV--PLLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQM 167
+D K++M P++ + + + G ++ + + ++GL I DI V +
Sbjct: 53 NDNEDKKIMQYNPMV--IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQ 110
Query: 168 GIGRMIVQRILRMLTSREIYDIAALCSEE 196
G+G++++ +++ + Y I C E+
Sbjct: 111 GLGKLLIDQLVTIGFDYGCYKIILDCDEK 139
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 110 DDESSKRLMV--PLLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQM 167
+D K++M P++ + + + G ++ + + ++GL I DI V +
Sbjct: 54 NDNEDKKIMQYNPMV--IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQ 111
Query: 168 GIGRMIVQRILRMLTSREIYDIAALCSEE 196
G+G++++ +++ + Y I C E+
Sbjct: 112 GLGKLLIDQLVTIGFDYGCYKIILDCDEK 140
>pdb|2ATR|A Chain A, Acetyltransferase, Gnat Family Protein Sp0256 From
Streptococcus Pneumoniae Tigr4
Length = 138
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 129 VVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSREIYD 188
V+ + +VG R V D + + D++V+PS ++ GIG + + L +E Y
Sbjct: 43 VIYLALDGDAVVGLIRLVGDGFSSVFVQDLIVLPSYQRQGIGSSLXKEALGNF--KEAYQ 100
Query: 189 IAALCSEEER 198
+ E E+
Sbjct: 101 VQLATEETEK 110
>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
Length = 332
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 229 SAWFYHRWLLGAGSGRCELSVEKSTV 254
>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 227 SAWFYHRWLLGAGSGRCELSVEKSTV 252
>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 228 SAWFYHRWLLGAGSGRCELSVEKSTV 253
>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
Length = 334
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 231 SAWFYHRWLLGAGSGRCELSVEKSTV 256
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/72 (18%), Positives = 33/72 (45%)
Query: 125 LAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSR 184
+ + + G ++ + + ++GL I DI V + G+G++++ +++ +
Sbjct: 67 IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVTIGFDY 126
Query: 185 EIYDIAALCSEE 196
Y I C E+
Sbjct: 127 GCYKIILDCDEK 138
>pdb|2OZH|A Chain A, Crystal Structure Of A Putative Acetyltransferase
Belonging To The Gnat Family (Xcc2953) From Xanthomonas
Campestris Pv. Campestris At 1.40 A Resolution
Length = 142
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 136 NGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRI 177
+G+ V F R +SD A + D+ V+P R G + + +
Sbjct: 53 DGRQVAFARVISDYATFAYLGDVFVLPEHRGRGYSKALXDAV 94
>pdb|2CNM|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNS|A Chain A, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|B Chain B, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|C Chain C, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNT|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|D Chain D, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea
Length = 160
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 121 LLGNLAQRVVPVT-PSNGQLVGFGRAVSDVGL-TASIHDIMVIPSLRQMGIGRMIVQRIL 178
GN +R + + ++ ++ F A++ V L A++ +I V P ++ G+GRM+++ ++
Sbjct: 32 FFGNQGERYLNLKLTADDRMAAF--AITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLI 89
Query: 179 RMLTSREI 186
L +R +
Sbjct: 90 DELETRGV 97
>pdb|1N71|A Chain A, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|B Chain B, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|C Chain C, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|D Chain D, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
Length = 180
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 127 QRVVPVTPSNGQLVGFGRAVSDVGLTA-SIHDIMVIPSLRQMGIGRMIVQRILRMLTSR 184
+R+ +LVGF A+ G+T +H ++V S R+ IG +V + + + SR
Sbjct: 44 ERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASR 102
>pdb|1B87|A Chain A, Crystal Structure Of An Aminoglycoside
6'-N-Acetyltransferase
Length = 181
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 127 QRVVPVTPSNGQLVGFGRAVSDVGLTA-SIHDIMVIPSLRQMGIGRMIVQRILRMLTSR 184
+R+ +LVGF A+ G+T +H ++V S R+ IG +V + + + SR
Sbjct: 44 ERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASR 102
>pdb|2A4N|A Chain A, Crystal Structure Of Aminoglycoside 6'-N-Acetyltransferase
Complexed With Coenzyme A
pdb|2A4N|B Chain B, Crystal Structure Of Aminoglycoside 6'-N-Acetyltransferase
Complexed With Coenzyme A
Length = 182
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 127 QRVVPVTPSNGQLVGFGRAVSDVGLTA-SIHDIMVIPSLRQMGIGRMIVQRILRMLTSR 184
+R+ +LVGF A+ G+T +H ++V S R+ IG +V + + + SR
Sbjct: 44 ERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASR 102
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 162 PSLRQMGIGRMIVQRILRMLTSREIYD 188
PSLR+ G+G + ++ + + + ++ +YD
Sbjct: 4 PSLRKSGVGNIFIKNLDKSIDNKALYD 30
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 162 PSLRQMGIGRMIVQRILRMLTSREIYD 188
PSLR+ G+G + ++ + + + ++ +YD
Sbjct: 96 PSLRKSGVGNIFIKNLDKSIDNKALYD 122
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 162 PSLRQMGIGRMIVQRILRMLTSREIYD 188
PSLR+ G+G + ++ + + + ++ +YD
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYD 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,895,709
Number of Sequences: 62578
Number of extensions: 165087
Number of successful extensions: 273
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 20
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)