Query 029041
Match_columns 200
No_of_seqs 110 out of 329
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 1.9E-88 6.4E-93 593.3 18.2 198 1-199 66-263 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 5.4E-88 1.8E-92 589.4 14.4 194 1-195 66-259 (261)
3 2xzm_W 40S ribosomal protein S 100.0 1.1E-85 3.8E-90 574.5 21.2 192 1-193 66-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 4.3E-76 1.5E-80 510.5 15.9 173 1-174 67-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 5.2E-73 1.8E-77 483.2 18.5 173 1-180 32-205 (213)
6 2ckk_A KIN17; beta barrel, rib 95.7 0.031 1.1E-06 43.6 7.1 41 92-135 56-96 (127)
7 2do3_A Transcription elongatio 95.2 0.034 1.2E-06 39.6 5.3 44 110-158 18-62 (69)
8 1vq8_T 50S ribosomal protein L 87.2 1.3 4.3E-05 34.4 5.9 56 106-164 39-101 (120)
9 3j21_U 50S ribosomal protein L 83.0 1.8 6.1E-05 33.6 5.0 38 107-147 43-80 (121)
10 1nz9_A Transcription antitermi 82.1 4.2 0.00014 26.6 6.0 27 108-134 3-29 (58)
11 1p9k_A ORF, hypothetical prote 80.8 0.83 2.8E-05 31.8 2.2 33 2-36 45-77 (79)
12 2k6p_A Uncharacterized protein 77.5 1.6 5.4E-05 30.9 2.9 32 2-34 25-56 (92)
13 3v2d_Y 50S ribosomal protein L 76.3 1.6 5.3E-05 33.4 2.6 29 108-136 5-33 (110)
14 3r8s_U 50S ribosomal protein L 75.1 2.9 0.0001 31.4 3.8 35 109-147 3-37 (102)
15 3u5e_Y L33, YL33, 60S ribosoma 74.6 3.4 0.00012 32.3 4.2 39 106-147 46-84 (127)
16 3iz5_Y 60S ribosomal protein L 74.6 3.8 0.00013 32.9 4.7 56 106-164 45-107 (150)
17 4a17_S RPL26, 60S ribosomal pr 73.7 4.7 0.00016 31.8 4.9 39 106-147 45-83 (135)
18 2ftc_N Mitochondrial ribosomal 73.5 3.3 0.00011 30.7 3.8 23 113-135 1-23 (96)
19 2zjr_R 50S ribosomal protein L 72.3 3.1 0.00011 31.8 3.4 36 109-147 15-50 (115)
20 2zkr_t 60S ribosomal protein L 70.1 3.1 0.00011 33.2 3.1 39 107-148 46-85 (145)
21 1c05_A Ribosomal protein S4 de 69.9 2.1 7.1E-05 34.0 2.1 28 2-29 75-102 (159)
22 2cqj_A BRMS2, U3 small nucleol 69.7 0.99 3.4E-05 31.4 0.1 28 1-28 31-60 (71)
23 1ksk_A Ribosomal small subunit 69.2 3.1 0.00011 34.1 3.1 27 2-28 27-53 (234)
24 1dm9_A Hypothetical 15.5 KD pr 68.7 3.7 0.00013 31.6 3.2 33 2-35 33-65 (133)
25 4a18_F RPL14; ribosome, eukary 68.6 4.1 0.00014 31.9 3.4 26 110-135 7-32 (126)
26 3bbn_D Ribosomal protein S4; s 68.3 3.9 0.00013 34.0 3.5 29 2-30 113-141 (201)
27 2wg5_A General control protein 65.4 14 0.00049 27.4 5.9 49 70-118 50-104 (109)
28 1v9f_A Ribosomal large subunit 63.6 3.2 0.00011 35.9 2.2 28 1-28 40-67 (325)
29 1vio_A Ribosomal small subunit 60.3 7 0.00024 32.3 3.6 43 2-44 26-74 (243)
30 3iz5_N 60S ribosomal protein L 60.3 4.9 0.00017 31.7 2.5 26 110-135 7-32 (134)
31 2vqe_D 30S ribosomal protein S 58.8 5.5 0.00019 33.0 2.7 28 2-29 123-150 (209)
32 2e6z_A Transcription elongatio 57.7 4.2 0.00014 27.2 1.5 28 107-134 5-32 (59)
33 2lcj_A PAB POLC intein; hydrol 56.0 44 0.0015 26.3 7.5 61 38-98 52-120 (185)
34 4a18_N RPL27, ribosomal protei 54.1 8.6 0.00029 30.7 2.9 26 110-135 5-30 (144)
35 3j21_5 50S ribosomal protein L 52.5 6.6 0.00023 28.3 1.9 25 110-134 4-28 (83)
36 3izc_N 60S ribosomal protein R 52.5 7.8 0.00027 30.7 2.5 25 110-134 15-39 (138)
37 2joy_A 50S ribosomal protein L 52.1 8 0.00027 28.4 2.3 25 110-134 4-28 (96)
38 3dh3_A Ribosomal large subunit 47.9 12 0.0004 32.4 3.0 42 2-44 30-79 (290)
39 3kdf_D Replication protein A 3 46.0 89 0.003 23.2 8.3 78 2-82 21-109 (132)
40 3r8n_D 30S ribosomal protein S 45.3 3.8 0.00013 34.2 -0.4 30 2-31 119-148 (205)
41 3p8b_B Transcription antitermi 44.4 12 0.00042 28.8 2.4 29 108-136 90-118 (152)
42 4f0h_B Ribulose bisphosphate c 42.8 32 0.0011 27.2 4.6 41 30-85 76-124 (138)
43 2in0_A Endonuclease PI-MTUI; h 40.9 37 0.0013 25.2 4.6 27 139-165 53-79 (139)
44 3m9b_A Proteasome-associated A 40.4 46 0.0016 28.7 5.6 61 77-152 117-183 (251)
45 2jvv_A Transcription antitermi 39.8 20 0.00068 28.2 3.1 29 107-135 125-153 (181)
46 3e0e_A Replication protein A; 38.3 82 0.0028 22.3 5.9 10 109-118 63-72 (97)
47 2pi2_A Replication protein A 3 34.7 1.8E+02 0.0063 24.2 8.5 77 3-82 62-149 (270)
48 3bbo_W Ribosomal protein L24; 34.3 2.9 9.8E-05 34.9 -2.8 26 110-135 69-94 (191)
49 3u5c_J 40S ribosomal protein S 34.0 6.4 0.00022 32.8 -0.8 29 2-30 131-161 (197)
50 3lag_A Uncharacterized protein 34.0 88 0.003 21.8 5.5 75 59-146 17-91 (98)
51 3r4d_A CEA-related cell adhesi 30.1 1.1E+02 0.0039 22.2 5.8 66 35-100 64-133 (208)
52 3iuw_A Activating signal coint 29.9 36 0.0012 24.6 2.7 17 82-98 31-47 (83)
53 2qf4_A Cell shape determining 29.5 1.8E+02 0.0062 22.8 7.2 60 86-165 106-166 (172)
54 2kkq_A Myotilin; unknown funct 28.8 1.1E+02 0.0038 21.0 5.3 38 27-64 56-95 (116)
55 3hp7_A Hemolysin, putative; st 27.9 17 0.00057 31.4 0.8 29 1-29 30-60 (291)
56 4gop_B Putative uncharacterize 27.1 1.7E+02 0.0057 21.7 6.3 77 3-82 27-114 (136)
57 3lwc_A Uncharacterized protein 26.8 1.5E+02 0.0051 21.4 5.9 49 35-100 44-92 (119)
58 1mkh_A Metrs;, C-terminal doma 25.9 85 0.0029 23.0 4.3 16 126-141 14-29 (107)
59 2pa7_A DTDP-6-deoxy-3,4-keto-h 24.7 1.6E+02 0.0053 22.7 5.8 50 64-119 59-111 (141)
60 2cwp_A Metrs related protein; 24.6 99 0.0034 22.9 4.5 16 126-141 18-33 (112)
61 1q7h_A Conserved hypothetical 23.8 32 0.0011 26.3 1.7 18 86-103 98-115 (153)
62 2hbp_A Cytoskeleton assembly c 23.7 1.1E+02 0.0037 21.4 4.2 43 34-90 5-47 (68)
63 2dm2_A Palladin; beta-sandwich 22.9 70 0.0024 21.4 3.2 36 28-63 50-87 (110)
64 3dm3_A Replication factor A; p 22.5 1.7E+02 0.006 21.0 5.5 24 57-80 15-38 (105)
65 4eql_A 4-substituted benzoates 22.2 22 0.00076 33.7 0.5 60 31-98 350-409 (581)
66 3o6q_A Stage II sporulation pr 22.0 40 0.0014 27.1 1.9 31 36-67 100-130 (157)
67 3ers_X TRNA-binding protein YG 21.9 1.6E+02 0.0055 22.0 5.3 16 126-141 15-30 (118)
68 3iz6_C 40S ribosomal protein S 21.7 6.5 0.00022 32.7 -2.9 27 2-28 133-159 (195)
69 1pyb_A Methionyl-tRNA syntheta 21.3 90 0.0031 23.1 3.7 16 126-141 18-33 (111)
70 2a7y_A Hypothetical protein RV 21.2 62 0.0021 23.5 2.6 35 117-152 12-50 (83)
71 2oqk_A Putative translation in 20.7 2.5E+02 0.0086 20.8 6.1 47 51-100 29-82 (117)
72 2ozi_A Hypothetical protein RP 20.5 2.2E+02 0.0074 19.9 5.5 58 59-121 17-74 (98)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-88 Score=593.29 Aligned_cols=198 Identities=86% Similarity=1.369 Sum_probs=175.7
Q ss_pred CCccEEECCEEeccCCCCceeeEEEEecCCCceEEEEEcCCCceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccCce
Q 029041 1 MQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 80 (200)
Q Consensus 1 ~q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hDGr 80 (200)
|||+|+||||||||++||+|||||||||+|||||||+||++|||.+|+|++|||+||||||++|+++++|+|||+|||||
T Consensus 66 ~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGr 145 (265)
T 3iz6_D 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGR 145 (265)
T ss_dssp HTTCCEETTEECCCTTCCCCTTCEEECCSSCCEEEEEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSSCCEEEETTSC
T ss_pred HCCcEEECCEEeccCCCCCcEEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEccCCceEEEeecce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCccCCCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeEeEeeccE
Q 029041 81 TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNV 160 (200)
Q Consensus 81 ni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d~~g~~F~T~~~~v 160 (200)
||+||||.||+||||+||||++||++||||++||+||||||+|+|++|+|++|++|+||+++|||+|++|++|+|+++||
T Consensus 146 ti~~~dp~ik~~DTv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nv 225 (265)
T 3iz6_D 146 TIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNV 225 (265)
T ss_dssp CCBSCSSCCCTTCEEEECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGE
T ss_pred EEecCCCCcccCCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCceEeCcCCCceeeehhHHHHHHHHhhhhhcc
Q 029041 161 FTIGKGTKPWVSLPKGKGIKLSIIEEARKRQALATSAAA 199 (200)
Q Consensus 161 fvIG~~~~p~isLp~~~gi~~~~~e~~~~~~~~~~~~~~ 199 (200)
||||++++||||||++|||||+++|| |++||+|..++|
T Consensus 226 fvIGk~~kp~IsLp~~kg~~~~~~ee-r~~~~~~~~~~~ 263 (265)
T 3iz6_D 226 FTIGKGNKPWVSLPKGKGIKLSIIEE-QRKRDAAAQAAA 263 (265)
T ss_dssp EEEECSSCCCCCCCCCC----------------------
T ss_pred EEEccCCCeeEeCCCCCceeeehHHh-HHHHHHHhhhhc
Confidence 99999889999999999999999999 999998876654
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=5.4e-88 Score=589.36 Aligned_cols=194 Identities=64% Similarity=1.078 Sum_probs=191.4
Q ss_pred CCccEEECCEEeccCCCCceeeEEEEecCCCceEEEEEcCCCceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccCce
Q 029041 1 MQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 80 (200)
Q Consensus 1 ~q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hDGr 80 (200)
|||+|+||||||||++||+|||||||||+|||||||+||++|||.+|+|++|||+||||||++|+++++|+|||+|||||
T Consensus 66 ~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGr 145 (261)
T 3u5c_E 66 MQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGR 145 (261)
T ss_dssp TTTCEEETTBCCCCTTCEEETTCEEEETTTTEEEECCBCSSSCBCCEECCTTGGGCEECCEEEEEECGGGCEEEEETTTE
T ss_pred HCCcEEECCEEeccCCCCCceEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEecCCceEEEEecce
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCccCCCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeEeEeeccE
Q 029041 81 TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNV 160 (200)
Q Consensus 81 ni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d~~g~~F~T~~~~v 160 (200)
||+||||.||+||||+||||++||++||||++||+||||||+|+|++|+|++|++|+||+++|||+|++|++|+|+++||
T Consensus 146 ti~~~dp~ik~~Dtv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nv 225 (261)
T 3u5c_E 146 TIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNV 225 (261)
T ss_dssp EEESCCSSCCTTCEEEECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGE
T ss_pred EEecCCCCcccCCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCceEeCcCCCceeeehhHHHHHHHHhhh
Q 029041 161 FTIGKGTKPWVSLPKGKGIKLSIIEEARKRQALAT 195 (200)
Q Consensus 161 fvIG~~~~p~isLp~~~gi~~~~~e~~~~~~~~~~ 195 (200)
||||++++||||||++|||||+++|| |++||+|.
T Consensus 226 fvIGk~~kp~IsLp~~kg~~~~~~ee-r~~~~~~~ 259 (261)
T 3u5c_E 226 FVIGEQGKPYISLPKGKGIKLSIAEE-RDRRRAQQ 259 (261)
T ss_dssp EECCSSSCCSSCCCTTTTCCCCHHHH-HHHHTTTT
T ss_pred EEEccCCCeeEeCCCCCceeeehHHh-HHHHHHhc
Confidence 99999889999999999999999999 99998664
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=1.1e-85 Score=574.51 Aligned_cols=192 Identities=55% Similarity=0.937 Sum_probs=189.0
Q ss_pred CC--ccEEECCEEeccCCCCceeeEEEEecCCCceEEEEEcCCCceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccC
Q 029041 1 MQ--RHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYD 78 (200)
Q Consensus 1 ~q--~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hD 78 (200)
+| |+|+||||||+|++||||||||||||+|||||||+||++|||.+|+|++|||+||||||++|++++||+|||+|||
T Consensus 66 ~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~k~G~~ql~~HD 145 (260)
T 2xzm_W 66 NDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHD 145 (260)
T ss_dssp TSTTCCEEETTEECCCTTCEECTTCEEEEGGGTEEEEEEECSSSCEEEEECCTTGGGEEEEEEEEEEEETTTEEEEEETT
T ss_pred hccCCeEEECCEEeccCCCCCcEEEEEeEcCCCCEEEEEEcCCccEEEEEcChHHcccEEEEEEEEEEccCCceEEEecC
Confidence 46 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeCCCCccCCCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeEeEeec
Q 029041 79 GRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLG 158 (200)
Q Consensus 79 Grni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d~~g~~F~T~~~ 158 (200)
||||+|+||.||+||||+||||++||++||||++||+||||||+|+||+|+|++++++++|+++|||+|++|++|+|+++
T Consensus 146 Grti~~~d~~ik~~Dtv~idl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~ 225 (260)
T 2xzm_W 146 SRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLG 225 (260)
T ss_dssp TEEEESCCSSCCTTBEEEEETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGG
T ss_pred CceEeccCCcCccCCeEEEeCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCceEeCcCCCceeeehhHHHHHHHHh
Q 029041 159 NVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQAL 193 (200)
Q Consensus 159 ~vfvIG~~~~p~isLp~~~gi~~~~~e~~~~~~~~ 193 (200)
||||||++++||||||+++|||||++|| |++||+
T Consensus 226 ~vfvIG~~~kp~Islp~~kgi~l~i~ee-r~~~~~ 259 (260)
T 2xzm_W 226 NIFVLGQGKKSWIELPSGDGVRETILEE-RKRKFS 259 (260)
T ss_dssp GEEEEESTTCCSSCCSSSSSCCCCHHHH-HHHHTC
T ss_pred eEEEECCCCceeEecCCCCCeecchhhh-hhhhhc
Confidence 9999999779999999999999999999 999874
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.3e-76 Score=510.51 Aligned_cols=173 Identities=32% Similarity=0.482 Sum_probs=170.8
Q ss_pred CCccEEECCEEeccCCCCceeeEEEEecCCCceEEEEEcCCCceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccCce
Q 029041 1 MQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 80 (200)
Q Consensus 1 ~q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hDGr 80 (200)
+||+|+||||+|+|++|||||||||||++++|+||++||++|||.+|+|++|||+||||||++|++++||+|||+|||||
T Consensus 67 ~~~~I~VdGKvr~d~~ypvG~mDVIsI~kt~e~fr~i~d~kGr~~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~hDgr 146 (243)
T 3j20_E 67 NEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGT 146 (243)
T ss_dssp HHCSCEETTEECCCSSCEECTTCEEEETTTTEEEEEEECSSSCEEEEEECTTTTTEEEECCSCEEEETTTEEEECCSSCC
T ss_pred HCCcEEECCEEeccccCCcccceEEEecccCceeEEEecCCCceEEEEeChhhccceEEEEeeeEEccCCeeEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeC---CCCccCCCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEEecCC-ccEEEEEcCCCCeEeEe
Q 029041 81 TIRYP---DPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATR 156 (200)
Q Consensus 81 ni~~~---d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s-~~iV~v~d~~g~~F~T~ 156 (200)
||+|| ||.||+||||+||||++||+|||||++||+||||||+|+||+|+|++|++|++| +++|||+|++|++|+|+
T Consensus 147 ~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~ 226 (243)
T 3j20_E 147 NHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTL 226 (243)
T ss_dssp CEECSSSSCSSCSSCEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEE
T ss_pred eEEcccccCCCcccCCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEE
Confidence 99999 999999999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred eccEEEEccCCCceEeCc
Q 029041 157 LGNVFTIGKGTKPWVSLP 174 (200)
Q Consensus 157 ~~~vfvIG~~~~p~isLp 174 (200)
++||||||+ ++||||||
T Consensus 227 ~~~vfvIGk-~kp~islp 243 (243)
T 3j20_E 227 KEYAFVVGT-DKPKISLP 243 (243)
T ss_dssp TTTEEEEES-SCSCCSCC
T ss_pred eceEEEECC-CCccccCC
Confidence 999999999 99999998
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=5.2e-73 Score=483.20 Aligned_cols=173 Identities=34% Similarity=0.479 Sum_probs=161.4
Q ss_pred CCccEEECCEEeccCCCCceeeEEEEecCCCceEEEEEcCCCceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccCce
Q 029041 1 MQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 80 (200)
Q Consensus 1 ~q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hDGr 80 (200)
+||+|+||||+|+|++||||||||||| ++|+||++||++|||.+|+|++|||+||||||++|++++||+|||+|||||
T Consensus 32 ~~~~I~VDGKvr~d~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~HDGr 109 (213)
T 3kbg_A 32 ANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGR 109 (213)
T ss_dssp HTTCEEETTEECCCTTCEECTTCEEEE--TTEEEEEEECTTSCEEEEECCTTGGGEEEEEEEEEEEEGGGEEEEEETTSC
T ss_pred HCCCEEECCEEecccCCCccceeEEEe--cCceeEEEecCCCcEEEEEeChhHccceEEEEEEEEEecCCeeEEEecCcc
Confidence 589999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCccCCCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEEecCC-ccEEEEEcCCCCeEeEeecc
Q 029041 81 TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGN 159 (200)
Q Consensus 81 ni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s-~~iV~v~d~~g~~F~T~~~~ 159 (200)
||+||||.||+||||++|||++||+|||||++||+||||||+|+||+|+|++|++++|| +++||++ ++|+|+++|
T Consensus 110 ti~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~----~~F~T~~~~ 185 (213)
T 3kbg_A 110 TFITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ----EGFSTIKDH 185 (213)
T ss_dssp EEEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET----TTEEEEGGG
T ss_pred EEEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE----EEEEeeece
Confidence 99999999999999999999999999999999999999999999999999999999999 5899997 689999999
Q ss_pred EEEEccCCCceEeCcCCCcee
Q 029041 160 VFTIGKGTKPWVSLPKGKGIK 180 (200)
Q Consensus 160 vfvIG~~~~p~isLp~~~gi~ 180 (200)
|||||+ ++|||.+|++.=|-
T Consensus 186 vfvIGk-~~p~i~~~p~~~~~ 205 (213)
T 3kbg_A 186 VFMIGS-SKFSFVLSPEEVIP 205 (213)
T ss_dssp EEEEEC-SSCBCC--------
T ss_pred EEEEcC-CCccEEeChHHccc
Confidence 999999 79999877665443
No 6
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=95.69 E-value=0.031 Score=43.59 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=32.6
Q ss_pred CCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEE
Q 029041 92 NDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREK 135 (200)
Q Consensus 92 ~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~ 135 (200)
++.| .+....+-..+| ..|..+||..|.|.|..|++.++..
T Consensus 56 g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 56 GDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4544 555545656677 8999999999999999999999953
No 7
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=95.21 E-value=0.034 Score=39.60 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=34.5
Q ss_pred eeCCcEEEEECCCcceeEEEEEEEEEecCCcc-EEEEEcCCCCeEeEeec
Q 029041 110 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFE-TIHIQDALGHEFATRLG 158 (200)
Q Consensus 110 fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~-iV~v~d~~g~~F~T~~~ 158 (200)
|++|+.+-|++|+|.|+.|.|..++ .+ ++.+-|...+++.-...
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~-----~d~v~v~SD~t~~Ei~V~~~ 62 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVE-----ENFVILFSDLTMHELKVLPR 62 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEEC-----SSCEEEEESSSCSEEEECTT
T ss_pred ccCCCeEEEeccEEcCceEEEEEEe-----CCEEEEEeCCCCCEEEEEhH
Confidence 7899999999999999999999986 23 55566766666654433
No 8
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=87.18 E-value=1.3 Score=34.42 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=40.0
Q ss_pred EEEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcC-----CCCeEeE--eeccEEEEc
Q 029041 106 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFAT--RLGNVFTIG 164 (200)
Q Consensus 106 ~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d~-----~g~~F~T--~~~~vfvIG 164 (200)
..+++..|+.+.|+.|+.-|..|+|..+.. ....|+||.- +|.+++- -.+||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457889999999999999999999999863 2345777654 3444432 245666554
No 9
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.05 E-value=1.8 Score=33.58 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=30.8
Q ss_pred EEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029041 107 FIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 147 (200)
Q Consensus 107 ~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d 147 (200)
.+++..|+.+.|+.|+.-|..|+|..+... ...|+||.
T Consensus 43 ~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VEg 80 (121)
T 3j21_U 43 NLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVEG 80 (121)
T ss_dssp EEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEETT
T ss_pred ccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEeC
Confidence 578899999999999999999999998633 23566653
No 10
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=82.07 E-value=4.2 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=25.2
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEEEE
Q 029041 108 IKFDVGNVVMVTGGRNRGRVGIIKNRE 134 (200)
Q Consensus 108 i~fe~G~~~~v~gG~n~G~vG~I~~i~ 134 (200)
++|++|+.+.|+.|.-.|..|+|.++.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~ 29 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEIN 29 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEc
Confidence 568999999999999999999999986
No 11
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=80.81 E-value=0.83 Score=31.78 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=26.2
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecCCCceEEE
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRL 36 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRv 36 (200)
+|.|+|||++.++..+.+---|+|++. ++.+.+
T Consensus 45 ~G~V~VNG~~v~~~~~~v~~gd~I~v~--~~~~~~ 77 (79)
T 1p9k_A 45 EGQVKVDGAVETRKRCKIVAGQTVSFA--GHSVQV 77 (79)
T ss_dssp HHHHEETTBCCCCSSCCCCSSEEEEET--TEEEEE
T ss_pred CCEEEECCEEecCCCCCCCCCCEEEEC--CEEEEE
Confidence 688999999999988888777999985 444443
No 12
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=77.53 E-value=1.6 Score=30.91 Aligned_cols=32 Identities=9% Similarity=-0.026 Sum_probs=24.4
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecCCCceE
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENF 34 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~y 34 (200)
+|.|+|||+++ ...|.+---|+|+|...++.+
T Consensus 25 ~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~ 56 (92)
T 2k6p_A 25 VGAVWLNGSCA-KASKEVKAGDTISLHYLKGIE 56 (92)
T ss_dssp HTCCEETTEEC-CTTCBCCTTCEEEECCSSCCE
T ss_pred CCcEEECCEEc-CCCCCcCCCCEEEEEeCCceE
Confidence 57899999997 677877666999986544443
No 13
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=76.28 E-value=1.6 Score=33.37 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=25.4
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEEEEEe
Q 029041 108 IKFDVGNVVMVTGGRNRGRVGIIKNREKH 136 (200)
Q Consensus 108 i~fe~G~~~~v~gG~n~G~vG~I~~i~~~ 136 (200)
+++..|+.+.|+.|+.-|..|+|.++...
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 33 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPK 33 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECC
Confidence 46778999999999999999999998643
No 14
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=75.08 E-value=2.9 Score=31.41 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=27.4
Q ss_pred EeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029041 109 KFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 147 (200)
Q Consensus 109 ~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d 147 (200)
++..|+.++|+.|+.-|+.|+|.++... +.|++|.
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~----~~ViVeG 37 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS----GKVIVEG 37 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT----TEEEETT
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC----CEEEEeC
Confidence 4567999999999999999999998632 4455543
No 15
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=74.64 E-value=3.4 Score=32.34 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=31.1
Q ss_pred EEEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029041 106 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 147 (200)
Q Consensus 106 ~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d 147 (200)
-.++...|+.++|+.|+.-|..|+|..+.... ..|+||.
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk---~~V~VEg 84 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRLK---FAVQVDK 84 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGGG---TEEEEET
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECCC---CEEEEeC
Confidence 35788899999999999999999999986432 3466654
No 16
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=74.60 E-value=3.8 Score=32.92 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=38.3
Q ss_pred EEEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc-----CCCCeEe--EeeccEEEEc
Q 029041 106 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 164 (200)
Q Consensus 106 ~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d-----~~g~~F~--T~~~~vfvIG 164 (200)
-.+++..|+.++|+.|+.-|..|+|..+... ...|+||. .+|.+.+ --.|||+++-
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~ 107 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTK 107 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEE
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEc
Confidence 3578889999999999999999999998533 23455543 5564332 2235666554
No 17
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=73.72 E-value=4.7 Score=31.84 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=30.6
Q ss_pred EEEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029041 106 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 147 (200)
Q Consensus 106 ~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d 147 (200)
-.++...|+.++|+.|+.-|..|+|..+... ...|+||.
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEg 83 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRK---KWAIHVEK 83 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETT---TTEEEETT
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcC---CCEEEEeC
Confidence 3567888999999999999999999988532 23566654
No 18
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=73.48 E-value=3.3 Score=30.74 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.0
Q ss_pred CcEEEEECCCcceeEEEEEEEEE
Q 029041 113 GNVVMVTGGRNRGRVGIIKNREK 135 (200)
Q Consensus 113 G~~~~v~gG~n~G~vG~I~~i~~ 135 (200)
|+.++|+.|++-|+.|+|.++..
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~ 23 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIR 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEC
Confidence 78899999999999999999863
No 19
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=72.34 E-value=3.1 Score=31.85 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=29.3
Q ss_pred EeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029041 109 KFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 147 (200)
Q Consensus 109 ~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d 147 (200)
++..|+.+.|+.|+.-|+.|+|.++... .+.|+||.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~---~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPR---DQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETT---TTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEECC---CCEEEEeC
Confidence 7888999999999999999999998632 34566664
No 20
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=70.10 E-value=3.1 Score=33.19 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.9
Q ss_pred EEEeeCCcEEEEECCCcceeE-EEEEEEEEecCCccEEEEEcC
Q 029041 107 FIKFDVGNVVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDA 148 (200)
Q Consensus 107 ~i~fe~G~~~~v~gG~n~G~v-G~I~~i~~~~~s~~iV~v~d~ 148 (200)
.+++..|+.+.|+.|+.-|.. |+|..+... ...|+||.-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k---~~~V~VEgv 85 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRK---KYVIYIERV 85 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETT---TTEEEETTC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECC---CCEEEEeee
Confidence 367889999999999999999 999998632 345666553
No 21
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=69.92 E-value=2.1 Score=34.00 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=24.4
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecC
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPK 29 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~k 29 (200)
+|.|.|||++++++.|.+---|+|++..
T Consensus 75 ~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 75 HGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp TTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred CCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 6899999999999998887779999854
No 22
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.68 E-value=0.99 Score=31.36 Aligned_cols=28 Identities=32% Similarity=0.270 Sum_probs=23.4
Q ss_pred CCccEEECCEEeccCCCCcee--eEEEEec
Q 029041 1 MQRHVLVDAKVRTDKTYPAGF--MDVVSIP 28 (200)
Q Consensus 1 ~q~~V~VDGkvr~D~k~PvG~--MDVIsI~ 28 (200)
++|.|.|||++++.+-|.|-. -|.|++.
T Consensus 31 ~~G~V~Vng~~v~kps~~V~~~~~d~I~~~ 60 (71)
T 2cqj_A 31 EQGHVRVGPDVVTDPAFLVTRSMEDFVTWV 60 (71)
T ss_dssp HTTCEEETTBCCCCTTCEEEHHHHTTEEES
T ss_pred HCCcEEECCEEECCCCCCCCCCCCcEEEEE
Confidence 479999999999999999876 5777754
No 23
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=69.23 E-value=3.1 Score=34.14 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=22.9
Q ss_pred CccEEECCEEeccCCCCceeeEEEEec
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIP 28 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~ 28 (200)
+|.|+|||+++++..+++---|+|++.
T Consensus 27 ~G~V~VNG~~v~~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 27 GNRVTVDGEIVRNAAFKLLPEHDVAYD 53 (234)
T ss_dssp TTCEEETTEECCCTTCEECTTCCEEET
T ss_pred cCeEEECCEEeCCCCCCCCCCCEEEEe
Confidence 689999999998888877666999985
No 24
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=68.67 E-value=3.7 Score=31.56 Aligned_cols=33 Identities=6% Similarity=0.064 Sum_probs=26.2
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecCCCceEE
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFR 35 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yR 35 (200)
+|.|+|||++. ...+.|-.-|+|+|...++.|.
T Consensus 33 ~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~ 65 (133)
T 1dm9_A 33 GGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 (133)
T ss_dssp TTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEE
T ss_pred CCcEEECCEEc-CCCCEeCCCCEEEEEeCCceee
Confidence 68999999987 7888887779999976555443
No 25
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=68.61 E-value=4.1 Score=31.86 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.8
Q ss_pred eeCCcEEEEECCCcceeEEEEEEEEE
Q 029041 110 FDVGNVVMVTGGRNRGRVGIIKNREK 135 (200)
Q Consensus 110 fe~G~~~~v~gG~n~G~vG~I~~i~~ 135 (200)
.|+|-.|++..|.+.|+.++|++|..
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID 32 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIIN 32 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEET
T ss_pred eecceEEEEccCCccCCEEEEEEEec
Confidence 47899999999999999999999963
No 26
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=68.32 E-value=3.9 Score=34.01 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=25.7
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecCC
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPKT 30 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~kt 30 (200)
+|.|.|||++++++.|.+---|+|++...
T Consensus 113 ~G~V~VNG~~V~~pS~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 113 HRHILVNGRIVDIPSYRCKPQDTIMARDE 141 (201)
T ss_dssp TTCEEETTEECCCTTCBCCTTEEEEECSS
T ss_pred CCcEEeCCEEEeecceecCCCCEEEEccc
Confidence 68999999999999999988899999643
No 27
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=65.38 E-value=14 Score=27.41 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=31.0
Q ss_pred CeeEEEccCceEEeeC-----C-CCccCCCeEEEecCCCceeEEEEeeCCcEEEE
Q 029041 70 GIPYINTYDGRTIRYP-----D-PLIKANDTIKLDLETNKITEFIKFDVGNVVMV 118 (200)
Q Consensus 70 G~~ql~~hDGrni~~~-----d-~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v 118 (200)
+...+.+..|+++.++ | ..+++|++|-++-.+..|++.+|++.+..+.+
T Consensus 50 ~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~ 104 (109)
T 2wg5_A 50 GRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYG 104 (109)
T ss_dssp SCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC---------
T ss_pred CEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchh
Confidence 3455556667775443 3 36999999999999999999999999877643
No 28
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=63.55 E-value=3.2 Score=35.90 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCccEEECCEEeccCCCCceeeEEEEec
Q 029041 1 MQRHVLVDAKVRTDKTYPAGFMDVVSIP 28 (200)
Q Consensus 1 ~q~~V~VDGkvr~D~k~PvG~MDVIsI~ 28 (200)
.+|.|+|||+++.+..+++---|+|++.
T Consensus 40 ~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 40 LDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp ----------------------------
T ss_pred HCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 3689999999978888888777999985
No 29
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=60.29 E-value=7 Score=32.29 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=30.8
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecC-----CCce-EEEEEcCCCce
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPK-----TNEN-FRLLYDTKGRF 44 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~k-----t~e~-yRvl~d~kgrf 44 (200)
+|.|+|||+++++..+++---|+|+++. .+++ |-++.-+.|-.
T Consensus 26 ~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~i~~ed~~~~lvvnKP~G~~ 74 (243)
T 1vio_A 26 QSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGCV 74 (243)
T ss_dssp TTCEEETTEECCCTTCEECTTSCEEETTEECCSSCCCCEEEEEECTTCB
T ss_pred cCcEEECCEEeCCCCCCcCCCCEEEEeccccccCCCCEEEEEECCCCCE
Confidence 6899999999988888887778888853 2344 55555555443
No 30
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=60.26 E-value=4.9 Score=31.67 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=23.6
Q ss_pred eeCCcEEEEECCCcceeEEEEEEEEE
Q 029041 110 FDVGNVVMVTGGRNRGRVGIIKNREK 135 (200)
Q Consensus 110 fe~G~~~~v~gG~n~G~vG~I~~i~~ 135 (200)
.++|-+|++..|++.|+..+|++|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD 32 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC
Confidence 47899999999999999999999853
No 31
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=58.79 E-value=5.5 Score=33.01 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.7
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecC
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPK 29 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~k 29 (200)
+|.|+|||++++++.|.+---|+|++..
T Consensus 123 ~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 123 HGHITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp TTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred CCCEEECCEEeCcCCcCcCCCCEEEEcC
Confidence 6899999999998999887789999964
No 32
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.69 E-value=4.2 Score=27.18 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=25.4
Q ss_pred EEEeeCCcEEEEECCCcceeEEEEEEEE
Q 029041 107 FIKFDVGNVVMVTGGRNRGRVGIIKNRE 134 (200)
Q Consensus 107 ~i~fe~G~~~~v~gG~n~G~vG~I~~i~ 134 (200)
...|++|+.+-|+.|.=.|..|+|.++.
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 3568999999999999999999999985
No 33
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=55.99 E-value=44 Score=26.30 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=37.1
Q ss_pred Ec-CCCceEEEEcC---ccccceeeEEEEE----EEEeeCCeeEEEccCceEEeeCCCCccCCCeEEEe
Q 029041 38 YD-TKGRFRLHSIR---DEEAKFKLCKVRS----VQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 98 (200)
Q Consensus 38 ~d-~kgrf~l~~I~---~eEa~~KLcKV~~----k~~~~gG~~ql~~hDGrni~~~d~~ik~~DTv~i~ 98 (200)
+| ..|++...+++ .-++.-++.||+- .-.++..+|.++..+|+-.-..-.++++||.|.+-
T Consensus 52 ~d~~~gk~~~~~v~~v~~~~~~~~~~~I~t~~G~~I~~T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 52 IDLETGKVVLTDIEDVIKAPATDHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp EETTTTEEEEEEEEEEEEEECCSCEEEEEETTSCEEEECSSSEEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred EECCCCcEEEEEeeeEEEcCCCceEEEEEECCCCEEEECCCCEEEEecCCeEEEEEHHHCCCCCEEEEc
Confidence 56 56666665552 1223335666653 34466778888887776433345578899988863
No 34
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=54.08 E-value=8.6 Score=30.70 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.5
Q ss_pred eeCCcEEEEECCCcceeEEEEEEEEE
Q 029041 110 FDVGNVVMVTGGRNRGRVGIIKNREK 135 (200)
Q Consensus 110 fe~G~~~~v~gG~n~G~vG~I~~i~~ 135 (200)
+++|..|++..|+++|+-++|.++..
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD 30 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSE 30 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEES
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecC
Confidence 57899999999999999999998754
No 35
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.52 E-value=6.6 Score=28.27 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.9
Q ss_pred eeCCcEEEEECCCcceeEEEEEEEE
Q 029041 110 FDVGNVVMVTGGRNRGRVGIIKNRE 134 (200)
Q Consensus 110 fe~G~~~~v~gG~n~G~vG~I~~i~ 134 (200)
+++|..|++..|+..|+..+|.++.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~ii 28 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDII 28 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEc
Confidence 5789999999999999999999873
No 36
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=52.49 E-value=7.8 Score=30.67 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=23.1
Q ss_pred eeCCcEEEEECCCcceeEEEEEEEE
Q 029041 110 FDVGNVVMVTGGRNRGRVGIIKNRE 134 (200)
Q Consensus 110 fe~G~~~~v~gG~n~G~vG~I~~i~ 134 (200)
.++|-+|++..|++.|+..+|.++.
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~ii 39 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEII 39 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEEC
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEe
Confidence 4689999999999999999999985
No 37
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=52.10 E-value=8 Score=28.37 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.8
Q ss_pred eeCCcEEEEECCCcceeEEEEEEEE
Q 029041 110 FDVGNVVMVTGGRNRGRVGIIKNRE 134 (200)
Q Consensus 110 fe~G~~~~v~gG~n~G~vG~I~~i~ 134 (200)
+++|-.|++..|++.|+..+|.++.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i 28 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII 28 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe
Confidence 5789999999999999999999873
No 38
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=47.85 E-value=12 Score=32.38 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=32.0
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecC--------CCceEEEEEcCCCce
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPK--------TNENFRLLYDTKGRF 44 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~k--------t~e~yRvl~d~kgrf 44 (200)
+|.|+|||+++ +..+.+---|+|++.. .+++|-++.-+.|-.
T Consensus 30 ~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~~~ed~~~lvvnKP~G~~ 79 (290)
T 3dh3_A 30 QGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIV 79 (290)
T ss_dssp TTCEEETTEEC-CTTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTTCB
T ss_pred CCCEEECCEEc-cCCcCcCCCCEEEeccccccccccccceEEEEECCCccc
Confidence 68999999998 8888876669998853 345677777777654
No 39
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=46.03 E-value=89 Score=23.17 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=53.0
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecCCCceEEEE-EcCCC-ceEEEEcCccc------cc---eeeEEEEEEEEeeCC
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKG-RFRLHSIRDEE------AK---FKLCKVRSVQFGQKG 70 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl-~d~kg-rf~l~~I~~eE------a~---~KLcKV~~k~~~~gG 70 (200)
++...+||...+-.++ ||. |.++.....++.+. -|..| .+....-..++ +. -..+||.+....-.|
T Consensus 21 ~~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g 97 (132)
T 3kdf_D 21 DEVFRIGNVEISQVTI-VGI--IRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 97 (132)
T ss_dssp SSCEEETTEECCEEEE-EEE--EEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE-EEE--EEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECC
Confidence 3567889888887766 676 66676666666655 56779 77666543322 12 268999999988999
Q ss_pred eeEEEccCceEE
Q 029041 71 IPYINTYDGRTI 82 (200)
Q Consensus 71 ~~ql~~hDGrni 82 (200)
..||+.+.=|.+
T Consensus 98 ~~qi~~~~ir~v 109 (132)
T 3kdf_D 98 KKSLVAFKIMPL 109 (132)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEEEEEc
Confidence 999988644433
No 40
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=45.33 E-value=3.8 Score=34.24 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=25.4
Q ss_pred CccEEECCEEeccCCCCceeeEEEEecCCC
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTN 31 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~kt~ 31 (200)
+|.|.|||++++++.|.+---|+|++....
T Consensus 119 ~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~~ 148 (205)
T 3r8n_D 119 HKAIMVNGRVVNIASYQVSPNDVVSIREKA 148 (205)
T ss_dssp TTCCBSSSSBCCCTTCBCCTTBCCBCCSSS
T ss_pred CCCEEECCEEEccCCcCcCCCCEEEecCch
Confidence 689999999999888888777999996533
No 41
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=44.38 E-value=12 Score=28.75 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=26.2
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEEEEEe
Q 029041 108 IKFDVGNVVMVTGGRNRGRVGIIKNREKH 136 (200)
Q Consensus 108 i~fe~G~~~~v~gG~n~G~vG~I~~i~~~ 136 (200)
..|++|+.+-|+.|.-.|..|+|.++..+
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 56899999999999999999999999643
No 42
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=42.84 E-value=32 Score=27.18 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=29.8
Q ss_pred CCceEEEE-EcCCC-------ceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccCceEEeeC
Q 029041 30 TNENFRLL-YDTKG-------RFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP 85 (200)
Q Consensus 30 t~e~yRvl-~d~kg-------rf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hDGrni~~~ 85 (200)
-+++-||+ +|.+. .|.+++ +++|..|.|.|-+. +||+++|.
T Consensus 76 p~~YVRliGfDn~~~~qs~~~sfIV~R-P~~epgf~l~r~e~--------------~~r~~~y~ 124 (138)
T 4f0h_B 76 SNFYIKVVGFSSERGIESTIISFIVNR-PKHEPGFNLIRQED--------------KSRSIKYS 124 (138)
T ss_dssp TTSEEEEEEEECCTTTCEEEEEEEEEC-CSCCCCEEEEEEEC--------------STTCEEEE
T ss_pred CCCeEEEEEEeCCCceEEEEEEEEEeC-CCCCCceEEEEeec--------------CCceEEEE
Confidence 36788888 78775 366666 77888999988664 67777765
No 43
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=40.87 E-value=37 Score=25.19 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=18.6
Q ss_pred CccEEEEEcCCCCeEeEeeccEEEEcc
Q 029041 139 SFETIHIQDALGHEFATRLGNVFTIGK 165 (200)
Q Consensus 139 s~~iV~v~d~~g~~F~T~~~~vfvIG~ 165 (200)
..+++.|+..+|.+..+-.+.-|...+
T Consensus 53 ~~~~~~i~t~~G~~i~~T~~H~~~t~~ 79 (139)
T 2in0_A 53 TRDVIGLRIAGGAILWATPDHKVLTEY 79 (139)
T ss_dssp EEEEEEEEETTSCEEEECTTCEEEETT
T ss_pred CcEEEEEEeCCCCEEEecCCCeEEecC
Confidence 446788887788777776676666543
No 44
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.41 E-value=46 Score=28.65 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=41.5
Q ss_pred cCceEEeeC-C-----CCccCCCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCC
Q 029041 77 YDGRTIRYP-D-----PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALG 150 (200)
Q Consensus 77 hDGrni~~~-d-----~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~iV~v~d~~g 150 (200)
+-|+++++. + ..+++|++|.++ ++..|++..+|+. +|.+-++.|+- ++ .+.+.|-+..|
T Consensus 117 s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l--~d-~~R~lV~~~~~ 181 (251)
T 3m9b_A 117 TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL--AD-GHRALVVGHAD 181 (251)
T ss_dssp CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC--TT-SSEEEEECSSS
T ss_pred eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe--cC-CCEEEEecCCC
Confidence 577775553 2 369999999995 7999999999987 57777777663 11 22343455555
Q ss_pred Ce
Q 029041 151 HE 152 (200)
Q Consensus 151 ~~ 152 (200)
++
T Consensus 182 ee 183 (251)
T 3m9b_A 182 EE 183 (251)
T ss_dssp CE
T ss_pred ce
Confidence 44
No 45
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=39.79 E-value=20 Score=28.22 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=26.3
Q ss_pred EEEeeCCcEEEEECCCcceeEEEEEEEEE
Q 029041 107 FIKFDVGNVVMVTGGRNRGRVGIIKNREK 135 (200)
Q Consensus 107 ~i~fe~G~~~~v~gG~n~G~vG~I~~i~~ 135 (200)
...|++|+.+.|+.|.=.|..|+|.++..
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEET
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeC
Confidence 45899999999999999999999999863
No 46
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=38.28 E-value=82 Score=22.29 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=6.2
Q ss_pred EeeCCcEEEE
Q 029041 109 KFDVGNVVMV 118 (200)
Q Consensus 109 ~fe~G~~~~v 118 (200)
.|++|+.+.+
T Consensus 63 ~i~~Gdvv~i 72 (97)
T 3e0e_A 63 EVKKGDIAEV 72 (97)
T ss_dssp CCCTTCEEEE
T ss_pred ccCCCCEEEE
Confidence 5666666666
No 47
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=34.67 E-value=1.8e+02 Score=24.19 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=51.0
Q ss_pred ccEEECCEEeccCCCCceeeEEEEecCCCceEEEEE-cCCC-ceEEEEc-Cccc-----c---ceeeEEEEEEEEeeCCe
Q 029041 3 RHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKG-RFRLHSI-RDEE-----A---KFKLCKVRSVQFGQKGI 71 (200)
Q Consensus 3 ~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~-d~kg-rf~l~~I-~~eE-----a---~~KLcKV~~k~~~~gG~ 71 (200)
...++||+.++-.++ ||+ |.++.....++.+.. |..| .+....- +.++ + .=.++||.+....-.|.
T Consensus 62 ~~f~i~g~~i~~V~i-vG~--V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~ 138 (270)
T 2pi2_A 62 EVFRIGNVEISQVTI-VGI--IRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNK 138 (270)
T ss_dssp TEEEETTEEESEEEE-EEE--EEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTE
T ss_pred CcEEECCEEEEEEEE-EEE--EEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCe
Confidence 457788887776654 555 667766667777765 5577 6655433 3222 1 13689999999999999
Q ss_pred eEEEccCceEE
Q 029041 72 PYINTYDGRTI 82 (200)
Q Consensus 72 ~ql~~hDGrni 82 (200)
+||+.+.=|.+
T Consensus 139 ~qi~i~~ir~v 149 (270)
T 2pi2_A 139 KSLVAFKIMPL 149 (270)
T ss_dssp EEEEEEEEEEC
T ss_pred eEEEEEEEEec
Confidence 99998754443
No 48
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.29 E-value=2.9 Score=34.89 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=22.6
Q ss_pred eeCCcEEEEECCCcceeEEEEEEEEE
Q 029041 110 FDVGNVVMVTGGRNRGRVGIIKNREK 135 (200)
Q Consensus 110 fe~G~~~~v~gG~n~G~vG~I~~i~~ 135 (200)
+..|+.+.|+.|+.-|+.|+|.++..
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~ 94 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHK 94 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCS
T ss_pred eecCCEEEEeecCCCCceEEEEEEEC
Confidence 67789999999999999999988853
No 49
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=34.02 E-value=6.4 Score=32.79 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=24.2
Q ss_pred CccEEECCEEeccCCCCceee--EEEEecCC
Q 029041 2 QRHVLVDAKVRTDKTYPAGFM--DVVSIPKT 30 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~M--DVIsI~kt 30 (200)
+|.|.|||++++++.|.|-.= |.|++...
T Consensus 131 ~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~ 161 (197)
T 3u5c_J 131 QRHIAVGKQIVNIPSFMVRLDSEKHIDFAPT 161 (197)
T ss_dssp TSCCBSSSCBCCCTTCCCCSTTGGGCBCCSS
T ss_pred cCCEEECCEEeCCCccccCCCCccEEEEcCC
Confidence 789999999999999988774 67777644
No 50
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=34.00 E-value=88 Score=21.84 Aligned_cols=75 Identities=8% Similarity=0.097 Sum_probs=46.0
Q ss_pred EEEEEEEEeeCCeeEEEccCceEEeeCCCCccCCCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEEecC
Q 029041 59 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKG 138 (200)
Q Consensus 59 cKV~~k~~~~gG~~ql~~hDGrni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~~ 138 (200)
+||...+.-+|+..-+..|..+...+ +=+.-++.+..++++. ..+.+.+|...++--|. .+.-..+|
T Consensus 17 ~rV~r~~i~PG~~~~~H~H~~~~e~~----~v~~G~~~v~~~d~~~-~~~~l~~G~~~~ip~G~--------~H~~~N~g 83 (98)
T 3lag_A 17 VRVTEWRLPPGSATGHHTHGMDYVVV----PMADGEMTIVAPDGTR-SLAQLKTGRSYARKAGV--------QHDVRNES 83 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEE----ESSCBC-CEECTTSCE-ECCCBCTTCCEEECTTC--------EEEEBCCS
T ss_pred EEEEEEEECCCCccCcEECCCcEEEE----EEeccEEEEEeCCCce-EEEEecCCcEEEEcCCC--------cEECEECC
Confidence 67777888899999999999887443 1223355556655442 23456778877776653 12233556
Q ss_pred CccEEEEE
Q 029041 139 SFETIHIQ 146 (200)
Q Consensus 139 s~~iV~v~ 146 (200)
..+++.|+
T Consensus 84 ~~pl~~Ie 91 (98)
T 3lag_A 84 TAEIVFLE 91 (98)
T ss_dssp SSCEEEEE
T ss_pred CCeEEEEE
Confidence 66654443
No 51
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=30.09 E-value=1.1e+02 Score=22.16 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=39.7
Q ss_pred EEEEcCCCceEEEEcCccccceeeEEEEEEE-EeeCCeeEEEccCc---eEEeeCCCCccCCCeEEEecC
Q 029041 35 RLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQ-FGQKGIPYINTYDG---RTIRYPDPLIKANDTIKLDLE 100 (200)
Q Consensus 35 Rvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~-~~~gG~~ql~~hDG---rni~~~d~~ik~~DTv~i~l~ 100 (200)
|......+.|.+..++.+++..--|++.+.. .......+|..... -.+.........|+++.+.-.
T Consensus 64 r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~ 133 (208)
T 3r4d_A 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133 (208)
T ss_dssp SEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEE
T ss_pred eeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEE
Confidence 3334467889999999999999999998752 22222334444332 123323333666777766543
No 52
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=29.88 E-value=36 Score=24.58 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.4
Q ss_pred EeeCCCCccCCCeEEEe
Q 029041 82 IRYPDPLIKANDTIKLD 98 (200)
Q Consensus 82 i~~~d~~ik~~DTv~i~ 98 (200)
||..|.+|++||.|.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 77788899999998864
No 53
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=29.54 E-value=1.8e+02 Score=22.77 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=40.6
Q ss_pred CCCccCCCeEEEecCCCceeEEEEeeCCcEEEEECCCcceeEEEEEEEEEec-CCccEEEEEcCCCCeEeEeeccEEEEc
Q 029041 86 DPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALGHEFATRLGNVFTIG 164 (200)
Q Consensus 86 d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG~n~G~vG~I~~i~~~~-~s~~iV~v~d~~g~~F~T~~~~vfvIG 164 (200)
+.+++.||.|+-+=-.+.- -+|= -||+|.+++..+ +.+..+.++=+.. -..+++|+|+-
T Consensus 106 ~~~i~~GD~vvTSGl~g~f------P~Gi-----------pVG~V~~v~~~~~~~~~~i~v~p~ad---~~~l~~V~Vi~ 165 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNFN------VADI-----------PVGEVVATTHSTDYLTREVTVKLSAD---THNVDVIELVG 165 (172)
T ss_dssp CCCCCTTCEEEEECCSSSC------CEEE-----------EEEEEEEEESTTCSSCCEEEEEESCC---CTTCCEEEEEE
T ss_pred CCCCCCCCEEEECCCCCcC------CCCC-----------EEEEEEEEecCCCCcEEEEEEEECCC---cccCeEEEEEe
Confidence 4578888888877655432 2221 389999998766 4566788875432 35788999997
Q ss_pred c
Q 029041 165 K 165 (200)
Q Consensus 165 ~ 165 (200)
.
T Consensus 166 ~ 166 (172)
T 2qf4_A 166 N 166 (172)
T ss_dssp E
T ss_pred C
Confidence 6
No 54
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=28.83 E-value=1.1e+02 Score=20.99 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=30.0
Q ss_pred ecCCCceEEEEEcCCC--ceEEEEcCccccceeeEEEEEE
Q 029041 27 IPKTNENFRLLYDTKG--RFRLHSIRDEEAKFKLCKVRSV 64 (200)
Q Consensus 27 I~kt~e~yRvl~d~kg--rf~l~~I~~eEa~~KLcKV~~k 64 (200)
+...+..|++..+..| .|.+..++.+++..--|.+.|.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 95 (116)
T 2kkq_A 56 VQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNE 95 (116)
T ss_dssp CCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEET
T ss_pred CcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcC
Confidence 3334577888888777 6888899999999889998874
No 55
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=27.87 E-value=17 Score=31.40 Aligned_cols=29 Identities=7% Similarity=-0.187 Sum_probs=24.5
Q ss_pred CCccEEECC-E-EeccCCCCceeeEEEEecC
Q 029041 1 MQRHVLVDA-K-VRTDKTYPAGFMDVVSIPK 29 (200)
Q Consensus 1 ~q~~V~VDG-k-vr~D~k~PvG~MDVIsI~k 29 (200)
++|.|+||| + +.+++.+.|---|.|++..
T Consensus 30 ~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 30 MAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp HTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred HCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 478999999 8 8888888887779999963
No 56
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=27.13 E-value=1.7e+02 Score=21.74 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=48.9
Q ss_pred ccEEECCEEeccCCCCceeeEEEEecCCCceEEEE-EcCCCceEEEEcCc-cc------cc---eeeEEEEEEEEeeCCe
Q 029041 3 RHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRD-EE------AK---FKLCKVRSVQFGQKGI 71 (200)
Q Consensus 3 ~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl-~d~kgrf~l~~I~~-eE------a~---~KLcKV~~k~~~~gG~ 71 (200)
+...+||...+-..+ ||. |.++.....++.+. -|..|.+....-.. ++ +. -.++||.+....-.|.
T Consensus 27 ~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~ 103 (136)
T 4gop_B 27 AEFILDGAELGQLTF-VAV--VRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNR 103 (136)
T ss_dssp CCCBSSSSBCCEEEE-EEE--EEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTE
T ss_pred CcEEECCEEEEEEEE-EEE--EEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCE
Confidence 345667766665554 555 56666555555544 57778777654432 22 11 2689999999889999
Q ss_pred eEEEccCceEE
Q 029041 72 PYINTYDGRTI 82 (200)
Q Consensus 72 ~ql~~hDGrni 82 (200)
+||+.+.=|.+
T Consensus 104 ~qi~~~~ir~v 114 (136)
T 4gop_B 104 RSISSGHMRPV 114 (136)
T ss_dssp EEEEESEEEEC
T ss_pred EEEEEEEEEEC
Confidence 99988654443
No 57
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=26.75 E-value=1.5e+02 Score=21.41 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=28.6
Q ss_pred EEEEcCCCceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccCceEEeeCCCCccCCCeEEEecC
Q 029041 35 RLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLE 100 (200)
Q Consensus 35 Rvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hDGrni~~~d~~ik~~DTv~i~l~ 100 (200)
.+-+++..++..|. +.+|. .++-.|...+.+ ||..+. ++.||++.+.-.
T Consensus 44 ~~~~~pG~~~~~H~-~~~E~----------~~Vl~G~~~~~~-~g~~~~-----l~~GD~v~ip~g 92 (119)
T 3lwc_A 44 YGRYAPGQSLTETM-AVDDV----------MIVLEGRLSVST-DGETVT-----AGPGEIVYMPKG 92 (119)
T ss_dssp EEEECTTCEEEEEC-SSEEE----------EEEEEEEEEEEE-TTEEEE-----ECTTCEEEECTT
T ss_pred EEEECCCCCcCccC-CCCEE----------EEEEeCEEEEEE-CCEEEE-----ECCCCEEEECCC
Confidence 34455666677774 44444 334445666655 666654 678877776543
No 58
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=25.94 E-value=85 Score=23.05 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.1
Q ss_pred eEEEEEEEEEecCCcc
Q 029041 126 RVGIIKNREKHKGSFE 141 (200)
Q Consensus 126 ~vG~I~~i~~~~~s~~ 141 (200)
++|+|.+.++||.+..
T Consensus 14 ~VG~I~~~e~hp~adk 29 (107)
T 1mkh_A 14 RVGKIIEVKDHPNADK 29 (107)
T ss_dssp EEEEEEEEEECTTCSS
T ss_pred EEEEEEEEEECCCCCc
Confidence 6899999999998765
No 59
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=24.67 E-value=1.6e+02 Score=22.67 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=35.6
Q ss_pred EEEeeCCeeEEEccCceE---EeeCCCCccCCCeEEEecCCCceeEEEEeeCCcEEEEE
Q 029041 64 VQFGQKGIPYINTYDGRT---IRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVT 119 (200)
Q Consensus 64 k~~~~gG~~ql~~hDGrn---i~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~ 119 (200)
..++-.|...+.+.||+. +...+|. -.+.+|.+---...-|++|+++|+.
T Consensus 59 ~li~l~Gs~~v~ldDg~~~~~~~L~~~~------~gL~IppgvWh~~~~~s~~avllvl 111 (141)
T 2pa7_A 59 VLVCLNGSCRVILDDGNIIQEITLDSPA------VGLYVGPAVWHEMHDFSSDCVMMVL 111 (141)
T ss_dssp EEEEEESCEEEEEECSSCEEEEEECCTT------EEEEECTTCEEEEECCCTTCEEEEE
T ss_pred EEEEEccEEEEEEECCcEEEEEEECCCC------cEEEeCCCEEEEEEEcCCCeEEEEE
Confidence 345566788888899975 3323321 3788888888888888888888875
No 60
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=24.57 E-value=99 Score=22.92 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=14.0
Q ss_pred eEEEEEEEEEecCCcc
Q 029041 126 RVGIIKNREKHKGSFE 141 (200)
Q Consensus 126 ~vG~I~~i~~~~~s~~ 141 (200)
++|+|.+.++||.+..
T Consensus 18 rVG~I~~~e~hp~adk 33 (112)
T 2cwp_A 18 KVGLVKKAEKIKRTKK 33 (112)
T ss_dssp EEEEEEEEEECTTCSS
T ss_pred EEEEEEEEEECCCCCc
Confidence 6899999999998765
No 61
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=23.79 E-value=32 Score=26.30 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=11.5
Q ss_pred CCCccCCCeEEEecCCCc
Q 029041 86 DPLIKANDTIKLDLETNK 103 (200)
Q Consensus 86 d~~ik~~DTv~i~l~~~k 103 (200)
++.++.||.|.|--+.++
T Consensus 98 ~~~~~~gd~V~V~~~~g~ 115 (153)
T 1q7h_A 98 DDSIRKGDMIFVKSSKGY 115 (153)
T ss_dssp CTTCCTTCEEEEEETTSC
T ss_pred cCceeCCCEEEEEECCCC
Confidence 456777777777665543
No 62
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=23.70 E-value=1.1e+02 Score=21.41 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=31.9
Q ss_pred EEEEEcCCCceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccCceEEeeCCCCcc
Q 029041 34 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIK 90 (200)
Q Consensus 34 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hDGrni~~~d~~ik 90 (200)
-|.--|..|.|.+ ||+| + -+++|.++|.--||..|-+|-....
T Consensus 5 ~RtWtDrtG~F~V------eA~f--l------g~~dgki~LhK~nGv~I~VP~~klS 47 (68)
T 2hbp_A 5 SRLWVDRSGTFKV------DAEF--I------GCAKGKIHLHKANGVKIAVAADKLS 47 (68)
T ss_dssp SEEEEBSSSCCEE------EEEE--E------EEETTEEEEECTTSCEEEEETTSBC
T ss_pred ccEEEcCCCCeEE------EEEE--E------EEeCCEEEEEecCCcEEEeEhHHcC
Confidence 3777788898865 6643 2 2458999999999999988865443
No 63
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.86 E-value=70 Score=21.36 Aligned_cols=36 Identities=6% Similarity=0.102 Sum_probs=26.0
Q ss_pred cCCCceEEEEEcCCC--ceEEEEcCccccceeeEEEEE
Q 029041 28 PKTNENFRLLYDTKG--RFRLHSIRDEEAKFKLCKVRS 63 (200)
Q Consensus 28 ~kt~e~yRvl~d~kg--rf~l~~I~~eEa~~KLcKV~~ 63 (200)
...+.+|++..+..| .|.+..++.+++..--|.+.|
T Consensus 50 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 87 (110)
T 2dm2_A 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 87 (110)
T ss_dssp CTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEEC
T ss_pred CCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEE
Confidence 334567888887777 466667777787777888776
No 64
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=22.52 E-value=1.7e+02 Score=21.02 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=11.9
Q ss_pred eeEEEEEEEEeeCCeeEEEccCce
Q 029041 57 KLCKVRSVQFGQKGIPYINTYDGR 80 (200)
Q Consensus 57 KLcKV~~k~~~~gG~~ql~~hDGr 80 (200)
.-+-|..+-+-.+..-++...||+
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~ 38 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGS 38 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSC
T ss_pred CeEEEEEEEEECCCceEEEcCCCC
Confidence 445555544444444445555554
No 65
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=22.18 E-value=22 Score=33.73 Aligned_cols=60 Identities=12% Similarity=0.376 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCceEEEEcCccccceeeEEEEEEEEeeCCeeEEEccCceEEeeCCCCccCCCeEEEe
Q 029041 31 NENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 98 (200)
Q Consensus 31 ~e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gG~~ql~~hDGrni~~~d~~ik~~DTv~i~ 98 (200)
...|.|++|. ..|.+.+.++.|.. +.+-......++...+.++|.-| -+| |.+||+|.+.
T Consensus 350 ~~~~~L~~~~-~ffEFip~~~~~~~-~~v~l~eVe~G~~YelViTt~~G-L~R-----Yr~GD~v~v~ 409 (581)
T 4eql_A 350 DVSYTFMPNM-SYFEFIPMDGGDKN-DVVDLEDVKLGCTYEPVVTNFAG-LYR-----MRVGDIVLVT 409 (581)
T ss_dssp GCCEEECTTS-SEEEEEECSTTCCS-SCEEGGGCCTTCEEEEEEECSSS-CCS-----EECCEEEEEE
T ss_pred cCceeecCCc-EEEEEEeccccCCC-cEeCHHHcCCCceEEEEEeeccc-eee-----EEcCCEEEEc
Confidence 3579999999 89999998765422 44555555555666666666655 333 7888888765
No 66
>3o6q_A Stage II sporulation protein SA; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=22.00 E-value=40 Score=27.14 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=24.2
Q ss_pred EEEcCCCceEEEEcCccccceeeEEEEEEEEe
Q 029041 36 LLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFG 67 (200)
Q Consensus 36 vl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~ 67 (200)
+.||.+|+++|+|++-.++. -+.|+.+...+
T Consensus 100 vyY~~~~klaLiP~tv~~~~-yviKlsS~~~v 130 (157)
T 3o6q_A 100 VYYDQYGKVVLIPFTIETQN-YVIKLTSDSIV 130 (157)
T ss_dssp CEECTTSSEEEEEEEETTEE-EEEEEECSSCC
T ss_pred eeecCCCcEEEEEEEEccce-eEEEecchhhh
Confidence 57999999999999888876 46677665443
No 67
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=21.86 E-value=1.6e+02 Score=22.04 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.9
Q ss_pred eEEEEEEEEEecCCcc
Q 029041 126 RVGIIKNREKHKGSFE 141 (200)
Q Consensus 126 ~vG~I~~i~~~~~s~~ 141 (200)
|+|+|.+.+.||.+..
T Consensus 15 rVG~I~~~e~hp~AdK 30 (118)
T 3ers_X 15 RVGKIVEVKRHENADK 30 (118)
T ss_dssp EEEEEEEEECCTTCSS
T ss_pred EEEEEEEEEEcCCCCC
Confidence 6899999999997765
No 68
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.68 E-value=6.5 Score=32.68 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.8
Q ss_pred CccEEECCEEeccCCCCceeeEEEEec
Q 029041 2 QRHVLVDAKVRTDKTYPAGFMDVVSIP 28 (200)
Q Consensus 2 q~~V~VDGkvr~D~k~PvG~MDVIsI~ 28 (200)
+|+|.|||++++++.|.|-.=|++.|.
T Consensus 133 ~GhV~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 133 QRHIRVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp HHSTTTSCCCCCCCCCCCSSSCSSSSC
T ss_pred cCCEEECCEEeCCCCcCcCCCCEEEEE
Confidence 689999999999999999888887774
No 69
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=21.32 E-value=90 Score=23.08 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.0
Q ss_pred eEEEEEEEEEecCCcc
Q 029041 126 RVGIIKNREKHKGSFE 141 (200)
Q Consensus 126 ~vG~I~~i~~~~~s~~ 141 (200)
++|+|.+.+.||.+..
T Consensus 18 rVG~I~~~e~hp~adk 33 (111)
T 1pyb_A 18 RVAKVLSAERVEGSEK 33 (111)
T ss_dssp EEEEEEEEECCSSCSC
T ss_pred EEEEEEEEEECCCCCc
Confidence 6899999999997765
No 70
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=21.25 E-value=62 Score=23.52 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=23.7
Q ss_pred EEECCCcce---eEEEEEEEEEecCCcc-EEEEEcCCCCe
Q 029041 117 MVTGGRNRG---RVGIIKNREKHKGSFE-TIHIQDALGHE 152 (200)
Q Consensus 117 ~v~gG~n~G---~vG~I~~i~~~~~s~~-iV~v~d~~g~~ 152 (200)
+++.|+++| |.|.|.++.-..|..+ +|...| +|++
T Consensus 12 lvv~g~~vg~~~R~GeIvEV~g~dG~PPY~VRw~d-dGHe 50 (83)
T 2a7y_A 12 LVVKGTTTERHDQHAEIIEVRSADGSPPYVVRWLV-NGHE 50 (83)
T ss_dssp EEESCTTTSCCEEEEEEEECSCSSSCSCEEEEETT-TTEE
T ss_pred EEEecCcCCCCCcEEEEEEEECCCCCCCEEEEecC-CCcE
Confidence 456677766 6788888765668877 777644 4653
No 71
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.70 E-value=2.5e+02 Score=20.83 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=29.1
Q ss_pred ccccceeeEEEEEEEEeeCCeeEEEccCceEEeeCCC-------CccCCCeEEEecC
Q 029041 51 DEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-------LIKANDTIKLDLE 100 (200)
Q Consensus 51 ~eEa~~KLcKV~~k~~~~gG~~ql~~hDGrni~~~d~-------~ik~~DTv~i~l~ 100 (200)
++|... .++|..- ..++..++.+.||..+++.=+ -+.+||-|.+++.
T Consensus 29 ~~~~e~-~G~Vi~~--lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 29 KEEGQE-YGQVQRM--LGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLR 82 (117)
T ss_dssp CCTTEE-EEEEEEE--EETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEEC
T ss_pred CCCCEE-EEEEEEE--cCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEE
Confidence 334443 4666652 234677777888877553322 4569999999875
No 72
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=20.54 E-value=2.2e+02 Score=19.93 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=37.3
Q ss_pred EEEEEEEEeeCCeeEEEccCceEEeeCCCCccCCCeEEEecCCCceeEEEEeeCCcEEEEECC
Q 029041 59 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGG 121 (200)
Q Consensus 59 cKV~~k~~~~gG~~ql~~hDGrni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v~gG 121 (200)
++|...+.-+|+...++.|..-.+.+ +-..-++.+..++++. ....+..|+.+++-.|
T Consensus 17 v~v~~~~l~PG~~~~~H~H~~~~~iv----~v~~G~~~~~~~dG~~-~~~~l~aGd~~~~p~G 74 (98)
T 2ozi_A 17 VRVTEWRLPPGSATGHHTHGMDYVVV----PMADGEMTIVAPDGTR-SLAQLKTGRSYARKAG 74 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEE----ESSCBC-CEECTTSCE-ECCCBCTTCCEEECTT
T ss_pred EEEEEEEECCCCccCcEeCCCCEEEE----EEeeEEEEEEeCCCcE-EEEEECCCCEEEECCC
Confidence 56677777888888888887664332 2344456666666653 3456788887777666
Done!