Query 029042
Match_columns 200
No_of_seqs 161 out of 1362
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:33:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05922 Inhibitor_I9: Peptida 99.6 2.3E-15 5E-20 106.7 6.4 78 45-122 1-82 (82)
2 KOG1153 Subtilisin-related pro 99.5 2.3E-14 5E-19 129.9 7.9 133 42-175 79-241 (501)
3 cd04852 Peptidases_S8_3 Peptid 99.3 1.3E-12 2.9E-17 114.0 5.3 77 119-200 1-77 (307)
4 cd04077 Peptidases_S8_PCSK9_Pr 98.2 7.8E-07 1.7E-11 75.4 2.4 43 130-174 1-46 (255)
5 cd07489 Peptidases_S8_5 Peptid 97.7 2.2E-05 4.7E-10 68.7 2.1 31 142-174 4-34 (312)
6 cd04059 Peptidases_S8_Protein_ 97.6 2E-05 4.4E-10 68.0 1.5 32 142-175 30-61 (297)
7 KOG4266 Subtilisin kexin isozy 97.6 0.00016 3.5E-09 69.1 6.4 125 43-173 49-221 (1033)
8 PTZ00262 subtilisin-like prote 97.5 4.8E-05 1E-09 73.1 2.0 26 149-174 312-337 (639)
9 KOG3526 Subtilisin-like propro 97.5 0.00025 5.5E-09 64.4 6.3 146 15-173 10-181 (629)
10 cd07484 Peptidases_S8_Thermita 97.3 7.7E-05 1.7E-09 63.3 1.4 31 141-174 19-49 (260)
11 cd07494 Peptidases_S8_10 Pepti 97.3 0.00012 2.7E-09 64.2 2.7 33 141-176 11-43 (298)
12 cd04843 Peptidases_S8_11 Pepti 97.3 0.00014 3.1E-09 63.2 2.3 33 142-175 6-38 (277)
13 cd04857 Peptidases_S8_Tripepti 96.1 0.0043 9.4E-08 57.2 3.2 23 149-171 19-41 (412)
14 COG1404 AprE Subtilisin-like s 92.9 0.072 1.6E-06 47.6 2.6 27 149-175 138-164 (508)
15 KOG1114 Tripeptidyl peptidase 90.3 0.21 4.5E-06 50.5 2.7 24 149-172 77-100 (1304)
16 KOG0074 GTP-binding ADP-ribosy 55.2 8.1 0.00017 31.3 1.7 43 110-162 53-95 (185)
17 PF07172 GRP: Glycine rich pro 46.4 14 0.00029 27.3 1.7 15 11-27 5-19 (95)
18 COG1217 TypA Predicted membran 39.1 23 0.00049 33.9 2.3 19 153-174 66-84 (603)
19 PF12606 RELT: Tumour necrosis 31.3 29 0.00063 22.7 1.2 7 14-20 5-11 (50)
20 PF09625 VP9: VP9 protein; In 30.8 20 0.00043 25.7 0.4 20 36-55 30-49 (79)
21 PF07172 GRP: Glycine rich pro 30.3 75 0.0016 23.4 3.4 21 9-29 6-27 (95)
22 PF09902 DUF2129: Uncharacteri 26.4 70 0.0015 22.4 2.6 24 99-122 44-67 (71)
23 PF11119 DUF2633: Protein of u 26.3 91 0.002 21.1 3.0 23 7-29 7-29 (59)
24 PF10717 ODV-E18: Occlusion-de 25.1 1.6E+02 0.0035 21.4 4.3 9 23-31 40-48 (85)
25 PF11080 DUF2622: Protein of u 22.2 2.6E+02 0.0057 20.7 5.0 65 42-106 5-70 (96)
26 PF04530 Viral_Beta_CD: Viral 21.6 3.6E+02 0.0078 20.9 5.8 61 9-69 51-114 (122)
No 1
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=99.59 E-value=2.3e-15 Score=106.73 Aligned_cols=78 Identities=31% Similarity=0.447 Sum_probs=58.7
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHHhhCCCc----cccccceEEEeccceeEEEEecCHHHHHhhcCCCCeEEEecCCccc
Q 029042 45 PYVVYMGSSSNVGVAELAHLQLLSSIIPSE----ESDRISLIHHYKHSFKGFSAMLTEKEASVLSGHEKIVSVFPDPVLK 120 (200)
Q Consensus 45 ~YIV~Lk~~~~~~~~~~~H~~~l~s~l~~~----~~~~~~i~~sy~~~~nGfaa~lt~~~l~~L~~~p~V~~Ve~D~~~~ 120 (200)
+|||+|++..........|.+|+.+++... .....++.+.|+.+||||+++|+++++++|+++|+|++||||++++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 599999998754333777888888665421 1234679999999999999999999999999999999999999988
Q ss_pred cc
Q 029042 121 LH 122 (200)
Q Consensus 121 l~ 122 (200)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 2
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.3e-14 Score=129.93 Aligned_cols=133 Identities=16% Similarity=0.224 Sum_probs=102.8
Q ss_pred CCCcEEEEeCCCCCcchhHHHHHHHHHhhCCCccc-----cc-------------cceEEEec---cceeEEEEecCHHH
Q 029042 42 IPKPYVVYMGSSSNVGVAELAHLQLLSSIIPSEES-----DR-------------ISLIHHYK---HSFKGFSAMLTEKE 100 (200)
Q Consensus 42 ~~~~YIV~Lk~~~~~~~~~~~H~~~l~s~l~~~~~-----~~-------------~~i~~sy~---~~~nGfaa~lt~~~ 100 (200)
.+..|||++++++. ......|.+|++..+..... .. ..+.+.|. ..++||...++.+-
T Consensus 79 ~~~~YiV~f~~~~~-q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 79 LPSRYIVVFKPDAS-QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred cccceEEEeCCCcc-HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 57899999997764 34677788888866642110 00 12556665 37999999999999
Q ss_pred HHhhcCCCCeEEEecCCcccccc-----cccCccchhhhhhhccc--CCCCCCC--CCCCCCCeEEEEEccccCCCCCCC
Q 029042 101 ASVLSGHEKIVSVFPDPVLKLHT-----TRSWDFLEAEAEAKATT--STWSSHK--YHNISSDVIIGIIDTGIWPESPSF 171 (200)
Q Consensus 101 l~~L~~~p~V~~Ve~D~~~~l~t-----t~s~~~~gl~~~~~~~~--~~~~~~~--~~~~G~Gv~I~VIDTGI~p~H~~F 171 (200)
+..++++|-++.|++|..+.... +|+.++|||.|+++... -..|..| +..+|+||..||+||||+.+||||
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999999987653 78889999999986221 1234333 466899999999999999999999
Q ss_pred CCCC
Q 029042 172 KDRG 175 (200)
Q Consensus 172 ~grg 175 (200)
+||-
T Consensus 238 egRa 241 (501)
T KOG1153|consen 238 EGRA 241 (501)
T ss_pred ccce
Confidence 9994
No 3
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.33 E-value=1.3e-12 Score=114.05 Aligned_cols=77 Identities=43% Similarity=0.785 Sum_probs=63.6
Q ss_pred ccccccccCccchhhhhhhcccCCCCCCCCCCCCCCeEEEEEccccCCCCCCCCCCCCCCCCCCceeeeecCCCCCCCCC
Q 029042 119 LKLHTTRSWDFLEAEAEAKATTSTWSSHKYHNISSDVIIGIIDTGIWPESPSFKDRGMSEIPSKWKGVCMDSHDFKKSNC 198 (200)
Q Consensus 119 ~~l~tt~s~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~I~VIDTGI~p~H~~F~grg~~~~p~~w~g~C~~g~~f~~~~C 198 (200)
++++++++|.|+|++..-. ..+|.. ...|+||+|+||||||+++||+|.+++..+++..|.+.|+.+..++...|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWG---GSLLGA--ANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSC 75 (307)
T ss_pred CCccccCCHHHcCCCCCCC---cccccc--cCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCc
Confidence 4688999999999975421 114555 77899999999999999999999999999999999999999887765556
Q ss_pred CC
Q 029042 199 NR 200 (200)
Q Consensus 199 N~ 200 (200)
|+
T Consensus 76 ~~ 77 (307)
T cd04852 76 NN 77 (307)
T ss_pred CC
Confidence 53
No 4
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=98.19 E-value=7.8e-07 Score=75.40 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=31.8
Q ss_pred chhhhhhhcc--cCC-CCCCCCCCCCCCeEEEEEccccCCCCCCCCCC
Q 029042 130 LEAEAEAKAT--TST-WSSHKYHNISSDVIIGIIDTGIWPESPSFKDR 174 (200)
Q Consensus 130 ~gl~~~~~~~--~~~-~~~~~~~~~G~Gv~I~VIDTGI~p~H~~F~gr 174 (200)
|||.++++.. ... +|.. ...|+||+|+||||||+++||+|.++
T Consensus 1 w~l~~~~~~~~~~~~~~~~~--~~~G~gv~VaViDsGi~~~h~~~~~~ 46 (255)
T cd04077 1 WGLDRISQRDLPLDGTYYYD--SSTGSGVDVYVLDTGIRTTHVEFGGR 46 (255)
T ss_pred CCccccCCCCCCCCCceEec--CCCCCCcEEEEEcCCCCCCChhhhCC
Confidence 5676665411 011 3333 67899999999999999999999987
No 5
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.65 E-value=2.2e-05 Score=68.67 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCeEEEEEccccCCCCCCCCCC
Q 029042 142 TWSSHKYHNISSDVIIGIIDTGIWPESPSFKDR 174 (200)
Q Consensus 142 ~~~~~~~~~~G~Gv~I~VIDTGI~p~H~~F~gr 174 (200)
.+|.. ..+|+||+|+||||||+.+||+|.++
T Consensus 4 ~~~~~--g~tG~gv~VaViDsGid~~hp~l~~~ 34 (312)
T cd07489 4 KLHAE--GITGKGVKVAVVDTGIDYTHPALGGC 34 (312)
T ss_pred hHHhC--CCCCCCCEEEEEECCCCCCChhhhcC
Confidence 35665 67899999999999999999999764
No 6
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=97.63 E-value=2e-05 Score=67.98 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCeEEEEEccccCCCCCCCCCCC
Q 029042 142 TWSSHKYHNISSDVIIGIIDTGIWPESPSFKDRG 175 (200)
Q Consensus 142 ~~~~~~~~~~G~Gv~I~VIDTGI~p~H~~F~grg 175 (200)
..|.. ...|+||+|+||||||+++||+|.++-
T Consensus 30 ~~w~~--g~~G~gv~VaViDtGv~~~h~~l~~~~ 61 (297)
T cd04059 30 PAWEQ--GITGKGVTVAVVDDGLEITHPDLKDNY 61 (297)
T ss_pred HHHhC--CCCCcceEEEEEeCCcccCCHhHhhcc
Confidence 46876 678999999999999999999998863
No 7
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00016 Score=69.08 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCCCcchhHHHHHHHHHhhCCCccc------cccceEEEeccceeEEEEe-----cCHHHHHhhcCCCCeE
Q 029042 43 PKPYVVYMGSSSNVGVAELAHLQLLSSIIPSEES------DRISLIHHYKHSFKGFSAM-----LTEKEASVLSGHEKIV 111 (200)
Q Consensus 43 ~~~YIV~Lk~~~~~~~~~~~H~~~l~s~l~~~~~------~~~~i~~sy~~~~nGfaa~-----lt~~~l~~L~~~p~V~ 111 (200)
...|||+++.--. ...|.+++++-+.+..- .+-..-..|-..|.-.-.+ ..+-++++|+.+|+|+
T Consensus 49 e~EyIv~F~~y~~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred cceeEEEeccccc----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 4569999986532 35667788777653321 1111111222222111111 2345689999999999
Q ss_pred EEecCCccccc------------cccc------------------Cccchhhhh---hh----cccCCCCCCCCCCCCCC
Q 029042 112 SVFPDPVLKLH------------TTRS------------------WDFLEAEAE---AK----ATTSTWSSHKYHNISSD 154 (200)
Q Consensus 112 ~Ve~D~~~~l~------------tt~s------------------~~~~gl~~~---~~----~~~~~~~~~~~~~~G~G 154 (200)
.|.|-+.+... .|.+ |--|+-.-. .| .+++-+|.. +.+|++
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~--GyTGa~ 202 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKK--GYTGAK 202 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhc--cccCCc
Confidence 99998876421 0100 101110000 00 123457887 889999
Q ss_pred eEEEEEccccCCCCCCCCC
Q 029042 155 VIIGIIDTGIWPESPSFKD 173 (200)
Q Consensus 155 v~I~VIDTGI~p~H~~F~g 173 (200)
|+++|.|||+..+||-|+.
T Consensus 203 VkvAiFDTGl~~~HPHFrn 221 (1033)
T KOG4266|consen 203 VKVAIFDTGLRADHPHFRN 221 (1033)
T ss_pred eEEEEeecccccCCccccc
Confidence 9999999999999999975
No 8
>PTZ00262 subtilisin-like protease; Provisional
Probab=97.48 E-value=4.8e-05 Score=73.13 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.3
Q ss_pred CCCCCCeEEEEEccccCCCCCCCCCC
Q 029042 149 HNISSDVIIGIIDTGIWPESPSFKDR 174 (200)
Q Consensus 149 ~~~G~Gv~I~VIDTGI~p~H~~F~gr 174 (200)
...|+||+||||||||+.+||||.++
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~n 337 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDN 337 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhh
Confidence 45699999999999999999999864
No 9
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00025 Score=64.42 Aligned_cols=146 Identities=15% Similarity=0.179 Sum_probs=73.9
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCCCCCCCCCcEEEEeCCCCCcchhHHHHHHHHHh-hCCCccccccceEEEecc-ceeEE
Q 029042 15 LFPFLSLHCLVVIASSSSSSSSSSSNQIPKPYVVYMGSSSNVGVAELAHLQLLSS-IIPSEESDRISLIHHYKH-SFKGF 92 (200)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YIV~Lk~~~~~~~~~~~H~~~l~s-~l~~~~~~~~~i~~sy~~-~~nGf 92 (200)
+-+||+|||+.+.+..+ ..--...|+|+|+++... ...|.-.-.- +..........-.|.|.+ .+---
T Consensus 10 ~a~fl~lf~~~~gag~~-------~~vftnhflv~l~~g~g~---~~ah~va~~hgf~nrg~~~a~d~eyhf~h~~l~ha 79 (629)
T KOG3526|consen 10 IAVFLSLFCVMIGAGEA-------VDVFTNHFLVHLKEGGGL---EDAHRVAKRHGFINRGQVAASDNEYHFVHPALVHA 79 (629)
T ss_pred HHHHHHHHHHHhccccC-------cceeeeeEEEEEeccCCh---HHHHHHHHHhCccccccccccCceeeeeccccchh
Confidence 34678889998886643 233367899999988542 2222211110 000100011223455542 21111
Q ss_pred EEecCHHHHHhhcCCCCeEEEecCCccc-------cc-----------ccccCccc------hhhhhhhcccCCCCCCCC
Q 029042 93 SAMLTEKEASVLSGHEKIVSVFPDPVLK-------LH-----------TTRSWDFL------EAEAEAKATTSTWSSHKY 148 (200)
Q Consensus 93 aa~lt~~~l~~L~~~p~V~~Ve~D~~~~-------l~-----------tt~s~~~~------gl~~~~~~~~~~~~~~~~ 148 (200)
.-+-+..--++|.++|.|+.+++-.-+. .. -+..|-+. |-.+.+ ..-...|..
T Consensus 80 r~rrsl~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rld-lnv~~awa~-- 156 (629)
T KOG3526|consen 80 RTRRSLGHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLD-LNVAEAWAL-- 156 (629)
T ss_pred hhhcccchhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCccccc-ccHHHHHhh--
Confidence 1111223335677788877665533221 00 01111100 111110 000236776
Q ss_pred CCCCCCeEEEEEccccCCCCCCCCC
Q 029042 149 HNISSDVIIGIIDTGIWPESPSFKD 173 (200)
Q Consensus 149 ~~~G~Gv~I~VIDTGI~p~H~~F~g 173 (200)
+.+|++|+++|+|-||+..|||+.-
T Consensus 157 g~tgknvttaimddgvdymhpdlk~ 181 (629)
T KOG3526|consen 157 GYTGKNVTTAIMDDGVDYMHPDLKS 181 (629)
T ss_pred cccCCCceEEeecCCchhcCcchhc
Confidence 7889999999999999999998754
No 10
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=97.35 E-value=7.7e-05 Score=63.26 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCCeEEEEEccccCCCCCCCCCC
Q 029042 141 STWSSHKYHNISSDVIIGIIDTGIWPESPSFKDR 174 (200)
Q Consensus 141 ~~~~~~~~~~~G~Gv~I~VIDTGI~p~H~~F~gr 174 (200)
...|.. . .|+||+|+||||||+++||+|.+.
T Consensus 19 ~~~~~~--~-~G~gv~I~viDsGi~~~h~~l~~~ 49 (260)
T cd07484 19 PKAWDI--T-GGSGVTVAVVDTGVDPTHPDLLKV 49 (260)
T ss_pred HHHHhh--c-CCCCCEEEEEeCCCCCCCcccccC
Confidence 346875 4 899999999999999999998443
No 11
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.34 E-value=0.00012 Score=64.20 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCCeEEEEEccccCCCCCCCCCCCC
Q 029042 141 STWSSHKYHNISSDVIIGIIDTGIWPESPSFKDRGM 176 (200)
Q Consensus 141 ~~~~~~~~~~~G~Gv~I~VIDTGI~p~H~~F~grg~ 176 (200)
..+|.. ...|+||+|+||||||+.+|+ |.++++
T Consensus 11 ~~~~~~--G~~G~Gv~VaViDTGv~~~h~-~~~~~~ 43 (298)
T cd07494 11 TRVHQR--GITGRGVRVAMVDTGFYAHPF-FESRGY 43 (298)
T ss_pred hHHHhc--CCCCCCcEEEEEeCCCcCCch-hhcCCc
Confidence 346776 778999999999999999998 887765
No 12
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.28 E-value=0.00014 Score=63.22 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCeEEEEEccccCCCCCCCCCCC
Q 029042 142 TWSSHKYHNISSDVIIGIIDTGIWPESPSFKDRG 175 (200)
Q Consensus 142 ~~~~~~~~~~G~Gv~I~VIDTGI~p~H~~F~grg 175 (200)
..|... ...|+||+|+||||||+++||||.++-
T Consensus 6 ~aw~~~-~g~G~gV~VaviDtGid~~Hpdl~~~~ 38 (277)
T cd04843 6 YAWTKP-GGSGQGVTFVDIEQGWNLNHEDLVGNG 38 (277)
T ss_pred HHHHhc-CCCCCcEEEEEecCCCCCCChhhcccc
Confidence 357651 334899999999999999999999874
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=96.14 E-value=0.0043 Score=57.19 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.1
Q ss_pred CCCCCCeEEEEEccccCCCCCCC
Q 029042 149 HNISSDVIIGIIDTGIWPESPSF 171 (200)
Q Consensus 149 ~~~G~Gv~I~VIDTGI~p~H~~F 171 (200)
..-|.||+|+|+||||||.||-+
T Consensus 19 ~~dgr~v~iai~dtgvd~~~~~l 41 (412)
T cd04857 19 EYDGRGVLIAILDTGVDPGAPGL 41 (412)
T ss_pred CCCCCCcEEEEecCCCCCCCCcc
Confidence 44599999999999999999988
No 14
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.072 Score=47.59 Aligned_cols=27 Identities=22% Similarity=0.387 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEEccccCCCCCCCCCCC
Q 029042 149 HNISSDVIIGIIDTGIWPESPSFKDRG 175 (200)
Q Consensus 149 ~~~G~Gv~I~VIDTGI~p~H~~F~grg 175 (200)
...|+||+++||||||+..|++|.++.
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~ 164 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSA 164 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhccc
Confidence 567999999999999999999998863
No 15
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.21 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=20.7
Q ss_pred CCCCCCeEEEEEccccCCCCCCCC
Q 029042 149 HNISSDVIIGIIDTGIWPESPSFK 172 (200)
Q Consensus 149 ~~~G~Gv~I~VIDTGI~p~H~~F~ 172 (200)
..-|.||.|+|+|||+||.-|-..
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 456999999999999999988553
No 16
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=55.18 E-value=8.1 Score=31.29 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=26.6
Q ss_pred eEEEecCCcccccccccCccchhhhhhhcccCCCCCCCCCCCCCCeEEEEEcc
Q 029042 110 IVSVFPDPVLKLHTTRSWDFLEAEAEAKATTSTWSSHKYHNISSDVIIGIIDT 162 (200)
Q Consensus 110 V~~Ve~D~~~~l~tt~s~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~I~VIDT 162 (200)
++.|+-|..+++. -|+.-|-..+ .++|..| ..--+..|||||+
T Consensus 53 ~k~v~~~g~f~Ln---vwDiGGqr~I-----RpyWsNY--yenvd~lIyVIDS 95 (185)
T KOG0074|consen 53 TKKVEYDGTFHLN---VWDIGGQRGI-----RPYWSNY--YENVDGLIYVIDS 95 (185)
T ss_pred eEEEeecCcEEEE---EEecCCcccc-----chhhhhh--hhccceEEEEEeC
Confidence 4677777777663 2443333322 4689763 2245789999996
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=46.42 E-value=14 Score=27.35 Aligned_cols=15 Identities=60% Similarity=0.742 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhhhhh
Q 029042 11 AFLLLFPFLSLHCLVVI 27 (200)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (200)
+||||. |+|.+++++
T Consensus 5 ~~llL~--l~LA~lLli 19 (95)
T PF07172_consen 5 AFLLLG--LLLAALLLI 19 (95)
T ss_pred HHHHHH--HHHHHHHHH
Confidence 345544 333344444
No 18
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=39.15 E-value=23 Score=33.92 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.0
Q ss_pred CCeEEEEEccccCCCCCCCCCC
Q 029042 153 SDVIIGIIDTGIWPESPSFKDR 174 (200)
Q Consensus 153 ~Gv~I~VIDTGI~p~H~~F~gr 174 (200)
+|+.|-|||| |.|.||+|.
T Consensus 66 ~~~~INIvDT---PGHADFGGE 84 (603)
T COG1217 66 NGTRINIVDT---PGHADFGGE 84 (603)
T ss_pred CCeEEEEecC---CCcCCccch
Confidence 3589999999 999999995
No 19
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=31.29 E-value=29 Score=22.70 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 029042 14 LLFPFLS 20 (200)
Q Consensus 14 ~~~~~~~ 20 (200)
+++||++
T Consensus 5 ~iV~i~i 11 (50)
T PF12606_consen 5 LIVSIFI 11 (50)
T ss_pred HHHHHHH
Confidence 3344433
No 20
>PF09625 VP9: VP9 protein; InterPro: IPR018587 VP9 is a protein containing a ferredoxin fold. Two dimers come together to form one asymmetric unit which possesses a DNA recognition fold and specific metal binding sites possibly for zinc. It is postulated that being a non-structural protein VP9 is involved in the transcriptional regulation of the White spot syndrome virus (WSSV), from which it comes. WSSV is the major viral pathogen in shrimp aquaculture []. VP9 is found N-terminal to the IPR009766 from INTERPRO. ; PDB: 2ZUG_A 2GJ2_A 2GJI_A.
Probab=30.77 E-value=20 Score=25.65 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=12.4
Q ss_pred CCCCCCCCCcEEEEeCCCCC
Q 029042 36 SSSSNQIPKPYVVYMGSSSN 55 (200)
Q Consensus 36 ~~~~~~~~~~YIV~Lk~~~~ 55 (200)
-|.+|=..+.|||.|+++..
T Consensus 30 iRkSEl~d~~~iV~Lk~~~~ 49 (79)
T PF09625_consen 30 IRKSELRDGVYIVQLKKGEV 49 (79)
T ss_dssp EEE-SS-TTEEEEEE-TT--
T ss_pred HHHhhcccceEEEEEecCCE
Confidence 45566689999999998864
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.33 E-value=75 Score=23.39 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=10.2
Q ss_pred hhHHHH-HHHHHHHHhhhhhhc
Q 029042 9 SMAFLL-LFPFLSLHCLVVIAS 29 (200)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~ 29 (200)
.+++.| |..+||+++-|+.+.
T Consensus 6 ~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHH
Confidence 444444 444455555555543
No 22
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=26.42 E-value=70 Score=22.39 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=18.6
Q ss_pred HHHHhhcCCCCeEEEecCCccccc
Q 029042 99 KEASVLSGHEKIVSVFPDPVLKLH 122 (200)
Q Consensus 99 ~~l~~L~~~p~V~~Ve~D~~~~l~ 122 (200)
+.+++|++.+.|+.|++...-.+.
T Consensus 44 ~~~~kl~~l~fVk~Ve~S~~~~l~ 67 (71)
T PF09902_consen 44 EIIEKLKKLKFVKKVEPSPRPELD 67 (71)
T ss_pred HHHHHHhcCCCeeEEeccChhhcc
Confidence 344788999999999998765543
No 23
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=26.28 E-value=91 Score=21.14 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhc
Q 029042 7 QNSMAFLLLFPFLSLHCLVVIAS 29 (200)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (200)
-+..-++||++||+||.-++..+
T Consensus 7 ~~mtriVLLISfiIlfgRl~Y~~ 29 (59)
T PF11119_consen 7 SRMTRIVLLISFIILFGRLIYSA 29 (59)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888899999988665544
No 24
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=25.13 E-value=1.6e+02 Score=21.36 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=4.0
Q ss_pred hhhhhhcCC
Q 029042 23 CLVVIASSS 31 (200)
Q Consensus 23 ~~~~~~~~~ 31 (200)
.++++++++
T Consensus 40 lImlfqsSS 48 (85)
T PF10717_consen 40 LIMLFQSSS 48 (85)
T ss_pred HHHHHhccC
Confidence 344455443
No 25
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=22.18 E-value=2.6e+02 Score=20.73 Aligned_cols=65 Identities=15% Similarity=0.047 Sum_probs=33.6
Q ss_pred CCCcEEEEeCCCCCcchhHHH-HHHHHHhhCCCccccccceEEEeccceeEEEEecCHHHHHhhcC
Q 029042 42 IPKPYVVYMGSSSNVGVAELA-HLQLLSSIIPSEESDRISLIHHYKHSFKGFSAMLTEKEASVLSG 106 (200)
Q Consensus 42 ~~~~YIV~Lk~~~~~~~~~~~-H~~~l~s~l~~~~~~~~~i~~sy~~~~nGfaa~lt~~~l~~L~~ 106 (200)
+-..|||+++-......+... |..+...=+..--....+..|.-...--|+.-.++++++++|.+
T Consensus 5 ~~~~YVVt~~~~e~~l~d~~~L~~~lt~~GF~~tl~D~~G~~HeLgtntfgl~S~l~~~eV~~la~ 70 (96)
T PF11080_consen 5 DITRYVVTFEYQEAGLTDINELNNHLTRAGFSTTLTDEDGNPHELGTNTFGLISALSAEEVAQLAR 70 (96)
T ss_pred cceEEEEEEEeccCChHHHHHHHHHHHhcCceeEEecCCCCEeecCCCeEEEEecCCHHHHHHHHH
Confidence 567899999865433112222 22221111100001112455665544456777789999987765
No 26
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=21.56 E-value=3.6e+02 Score=20.93 Aligned_cols=61 Identities=10% Similarity=-0.094 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhcCC---CCCCCCCCCCCCCcEEEEeCCCCCcchhHHHHHHHHHh
Q 029042 9 SMAFLLLFPFLSLHCLVVIASSS---SSSSSSSSNQIPKPYVVYMGSSSNVGVAELAHLQLLSS 69 (200)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~YIV~Lk~~~~~~~~~~~H~~~l~s 69 (200)
..+|+..+.+|+++|++....+. .+..-++.-++.+..=+++.+.+-...+.++-+.|-+-
T Consensus 51 y~l~~~~v~~L~~~~~y~~~~~~s~~~~~~~syfyQDLNsVeik~~~~PIDP~VIaAIHHwQk~ 114 (122)
T PF04530_consen 51 YVLFVCAVCMLFSILVYLYSSGGSNVDPVKGSYFYQDLNSVEIKLAPVPIDPEVIAAIHHWQKY 114 (122)
T ss_pred HHHHHHHHHHHHHHHHHheeccCcccCccccchheeeccceEEecCCCCCCHHHHHHHHHHHhC
Confidence 34444455455555666654322 22233444455555555555644222355554556543
Done!