Query 029043
Match_columns 200
No_of_seqs 111 out of 1192
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 7.3E-36 1.6E-40 246.2 16.6 178 1-180 150-335 (336)
2 COG0667 Tas Predicted oxidored 100.0 1.1E-34 2.3E-39 241.8 17.3 168 1-171 141-310 (316)
3 PRK10625 tas putative aldo-ket 100.0 1.5E-32 3.2E-37 232.1 17.9 170 1-170 164-339 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 4.8E-32 1E-36 226.4 16.2 167 1-168 135-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 2.4E-31 5.1E-36 224.7 17.1 170 1-171 153-334 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 2.9E-31 6.4E-36 215.0 15.1 138 1-172 126-266 (280)
7 PF00248 Aldo_ket_red: Aldo/ke 100.0 7.2E-31 1.6E-35 215.6 14.0 159 1-169 122-282 (283)
8 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.8E-29 3.9E-34 206.2 15.7 138 1-172 114-254 (267)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 7.6E-29 1.6E-33 203.7 16.6 150 1-167 133-284 (285)
10 PLN02587 L-galactose dehydroge 100.0 1.3E-28 2.9E-33 205.4 16.9 155 1-170 137-300 (314)
11 PRK14863 bifunctional regulato 100.0 7.6E-29 1.6E-33 204.9 13.3 153 1-168 127-280 (292)
12 PRK10376 putative oxidoreducta 100.0 4.2E-28 9.2E-33 200.3 15.1 139 1-170 150-288 (290)
13 KOG1577 Aldo/keto reductase fa 99.9 4E-27 8.7E-32 191.3 14.1 144 1-174 144-289 (300)
14 PRK11565 dkgA 2,5-diketo-D-glu 99.9 8.5E-27 1.8E-31 191.2 15.0 141 1-173 123-265 (275)
15 COG4989 Predicted oxidoreducta 99.9 6.5E-24 1.4E-28 167.0 12.8 150 1-172 142-295 (298)
16 COG1453 Predicted oxidoreducta 99.9 1.8E-23 3.9E-28 172.4 13.3 142 1-170 136-285 (391)
17 KOG1576 Predicted oxidoreducta 99.9 1.7E-21 3.6E-26 154.6 11.8 152 1-167 163-318 (342)
18 KOG3023 Glutamate-cysteine lig 97.3 0.00034 7.5E-09 55.6 4.4 64 1-65 162-227 (285)
19 COG1140 NarY Nitrate reductase 89.3 0.21 4.4E-06 42.7 1.5 54 7-60 263-317 (513)
20 COG4130 Predicted sugar epimer 84.4 6.7 0.00014 31.2 7.4 82 18-118 49-137 (272)
21 PRK10558 alpha-dehydro-beta-de 82.2 11 0.00023 30.8 8.2 62 6-68 15-79 (256)
22 COG2089 SpsE Sialic acid synth 80.0 4.7 0.0001 34.0 5.4 69 47-153 92-169 (347)
23 PF01876 RNase_P_p30: RNase P 78.8 9 0.0002 28.3 6.2 115 9-164 24-145 (150)
24 PRK10128 2-keto-3-deoxy-L-rham 78.1 20 0.00044 29.4 8.6 98 6-155 14-114 (267)
25 TIGR03239 GarL 2-dehydro-3-deo 77.6 20 0.00044 29.0 8.4 62 6-68 8-72 (249)
26 PF03102 NeuB: NeuB family; I 76.4 3.9 8.5E-05 33.0 3.9 31 123-153 105-135 (241)
27 PHA02128 hypothetical protein 75.6 6 0.00013 27.8 4.1 63 2-64 67-150 (151)
28 PRK06424 transcription factor; 70.5 16 0.00034 27.2 5.6 83 46-129 21-110 (144)
29 TIGR03569 NeuB_NnaB N-acetylne 69.0 10 0.00022 32.2 4.8 20 48-68 79-98 (329)
30 PF11020 DUF2610: Domain of un 68.5 14 0.0003 24.4 4.3 29 99-127 48-76 (82)
31 COG0159 TrpA Tryptophan syntha 68.5 19 0.00041 29.5 6.1 27 32-58 96-122 (265)
32 PF13378 MR_MLE_C: Enolase C-t 67.0 6.4 0.00014 27.2 2.8 55 16-71 3-58 (111)
33 TIGR02311 HpaI 2,4-dihydroxyhe 66.5 62 0.0013 26.1 8.8 62 5-67 7-71 (249)
34 TIGR03822 AblA_like_2 lysine-2 64.4 42 0.00092 28.2 7.7 70 2-71 160-240 (321)
35 cd00308 enolase_like Enolase-s 62.3 22 0.00047 28.1 5.4 69 3-71 139-209 (229)
36 PRK07535 methyltetrahydrofolat 59.3 53 0.0012 26.8 7.2 87 12-124 71-159 (261)
37 TIGR03586 PseI pseudaminic aci 58.1 22 0.00047 30.2 4.9 20 48-68 80-99 (327)
38 COG2185 Sbm Methylmalonyl-CoA 57.2 62 0.0013 24.0 6.5 56 12-71 19-76 (143)
39 PRK09140 2-dehydro-3-deoxy-6-p 55.4 96 0.0021 24.3 7.9 127 7-170 9-149 (206)
40 COG0282 ackA Acetate kinase [E 55.3 1.2E+02 0.0026 26.4 8.8 117 3-150 165-289 (396)
41 cd03319 L-Ala-DL-Glu_epimerase 54.6 31 0.00068 28.6 5.3 70 2-71 221-292 (316)
42 COG0135 TrpF Phosphoribosylant 53.8 45 0.00097 26.4 5.7 56 3-63 45-103 (208)
43 TIGR01928 menC_lowGC/arch o-su 52.9 30 0.00065 29.0 4.9 69 3-71 217-287 (324)
44 PF07021 MetW: Methionine bios 52.7 40 0.00086 26.3 5.2 71 1-71 95-172 (193)
45 PRK12360 4-hydroxy-3-methylbut 52.1 69 0.0015 26.5 6.8 44 106-150 225-274 (281)
46 cd03315 MLE_like Muconate lact 51.1 32 0.0007 27.7 4.7 69 3-71 174-244 (265)
47 PRK01045 ispH 4-hydroxy-3-meth 51.1 76 0.0017 26.5 6.9 45 106-151 226-276 (298)
48 PRK09856 fructoselysine 3-epim 50.5 86 0.0019 25.1 7.2 57 13-69 3-71 (275)
49 PF14502 HTH_41: Helix-turn-he 50.2 22 0.00049 21.1 2.7 31 105-135 6-38 (48)
50 TIGR03821 AblA_like_1 lysine-2 49.1 97 0.0021 26.0 7.4 67 4-71 168-246 (321)
51 cd03323 D-glucarate_dehydratas 48.1 40 0.00087 29.2 5.1 69 2-70 254-324 (395)
52 cd00423 Pterin_binding Pterin 46.7 1.5E+02 0.0033 23.8 9.8 90 13-121 79-168 (258)
53 cd03174 DRE_TIM_metallolyase D 45.3 63 0.0014 25.7 5.6 17 138-154 169-185 (265)
54 PF14871 GHL6: Hypothetical gl 44.9 21 0.00045 26.0 2.5 26 43-68 42-67 (132)
55 PRK09856 fructoselysine 3-epim 44.7 89 0.0019 25.0 6.4 80 20-118 49-144 (275)
56 TIGR00190 thiC thiamine biosyn 43.6 1.6E+02 0.0035 25.8 7.8 57 2-71 169-225 (423)
57 cd03322 rpsA The starvation se 43.6 57 0.0012 27.8 5.3 66 2-67 207-274 (361)
58 TIGR00216 ispH_lytB (E)-4-hydr 42.9 1.2E+02 0.0026 25.1 6.8 44 106-150 224-273 (280)
59 TIGR02534 mucon_cyclo muconate 42.3 48 0.001 28.2 4.7 69 3-71 232-302 (368)
60 PRK13352 thiamine biosynthesis 41.6 1.8E+02 0.0039 25.6 7.9 27 40-71 202-228 (431)
61 cd03318 MLE Muconate Lactonizi 41.3 45 0.00098 28.3 4.3 69 3-71 233-303 (365)
62 PF10668 Phage_terminase: Phag 40.1 49 0.0011 20.6 3.2 17 107-123 24-40 (60)
63 PF11242 DUF2774: Protein of u 40.0 44 0.00096 21.0 2.9 22 107-128 15-36 (63)
64 PRK08247 cystathionine gamma-s 39.5 1.2E+02 0.0026 25.7 6.7 64 10-73 116-181 (366)
65 smart00657 RPOL4c DNA-directed 39.5 1.3E+02 0.0027 21.3 5.8 60 102-171 54-113 (118)
66 COG0626 MetC Cystathionine bet 39.4 1.3E+02 0.0027 26.4 6.7 73 3-75 121-196 (396)
67 COG0761 lytB 4-Hydroxy-3-methy 39.4 1.1E+02 0.0023 25.6 5.9 70 47-151 203-278 (294)
68 PRK15072 bifunctional D-altron 38.9 80 0.0017 27.4 5.5 65 3-67 251-317 (404)
69 PRK09490 metH B12-dependent me 38.8 2.4E+02 0.0051 28.6 9.2 83 13-119 434-519 (1229)
70 cd04436 DEP_fRgd2 DEP (Disheve 38.4 12 0.00025 25.1 0.2 16 2-17 56-72 (84)
71 PRK08776 cystathionine gamma-s 38.3 1.3E+02 0.0029 26.0 6.8 66 6-71 121-188 (405)
72 PF00289 CPSase_L_chain: Carba 38.1 46 0.001 23.3 3.3 45 19-65 62-106 (110)
73 PRK03892 ribonuclease P protei 37.8 2.1E+02 0.0045 22.8 8.3 52 97-157 147-198 (216)
74 cd00739 DHPS DHPS subgroup of 37.8 2.2E+02 0.0048 23.1 10.0 90 13-121 79-168 (257)
75 PF07027 DUF1318: Protein of u 37.7 84 0.0018 21.5 4.4 29 99-127 44-72 (95)
76 PF00809 Pterin_bind: Pterin b 37.1 1.8E+02 0.0039 22.7 6.8 52 12-67 74-125 (210)
77 cd04742 NPD_FabD 2-Nitropropan 37.1 74 0.0016 28.0 5.0 61 4-65 34-102 (418)
78 PRK14017 galactonate dehydrata 36.9 81 0.0018 27.0 5.3 65 2-66 221-287 (382)
79 PRK01222 N-(5'-phosphoribosyl) 36.8 88 0.0019 24.5 5.0 51 7-62 52-104 (210)
80 cd03317 NAAAR N-acylamino acid 36.5 68 0.0015 27.1 4.7 59 12-70 232-291 (354)
81 PF13833 EF-hand_8: EF-hand do 35.3 49 0.0011 19.2 2.7 34 139-172 3-37 (54)
82 cd03327 MR_like_2 Mandelate ra 35.3 90 0.002 26.3 5.2 62 3-64 216-279 (341)
83 cd03316 MR_like Mandelate race 34.9 91 0.002 26.2 5.2 64 3-66 234-299 (357)
84 KOG0237 Glycinamide ribonucleo 34.6 1.3E+02 0.0027 28.0 6.0 75 48-132 58-144 (788)
85 TIGR01660 narH nitrate reducta 34.5 19 0.00041 32.0 1.0 52 8-59 264-316 (492)
86 cd03325 D-galactonate_dehydrat 34.4 96 0.0021 26.3 5.2 63 3-65 221-285 (352)
87 PF13167 GTP-bdg_N: GTP-bindin 33.9 21 0.00045 24.5 0.9 67 102-170 7-80 (95)
88 PF05368 NmrA: NmrA-like famil 33.4 1.5E+02 0.0032 23.0 5.9 67 3-70 39-106 (233)
89 TIGR02082 metH 5-methyltetrahy 33.4 3.1E+02 0.0068 27.7 9.1 57 13-70 418-476 (1178)
90 PF04914 DltD_C: DltD C-termin 33.3 41 0.00089 24.4 2.4 53 48-118 39-91 (130)
91 TIGR00238 KamA family protein. 33.2 2.7E+02 0.0058 23.5 7.7 24 48-71 240-263 (331)
92 PF02401 LYTB: LytB protein; 33.0 72 0.0016 26.4 4.1 44 106-150 225-274 (281)
93 PF01402 RHH_1: Ribbon-helix-h 32.8 86 0.0019 16.9 3.9 21 103-123 9-29 (39)
94 PF08418 Pol_alpha_B_N: DNA po 32.7 50 0.0011 26.5 3.1 51 101-152 8-61 (253)
95 TIGR01329 cysta_beta_ly_E cyst 32.6 1.8E+02 0.0039 24.9 6.7 62 11-72 112-175 (378)
96 PF07287 DUF1446: Protein of u 32.4 1.5E+02 0.0033 25.5 6.1 18 47-64 60-77 (362)
97 cd00248 Mth938-like Mth938-lik 32.4 1.4E+02 0.0029 20.8 4.9 52 17-68 38-89 (109)
98 TIGR01502 B_methylAsp_ase meth 32.2 1.2E+02 0.0025 26.7 5.4 56 12-67 301-357 (408)
99 PRK13958 N-(5'-phosphoribosyl) 32.0 54 0.0012 25.7 3.1 33 8-40 51-84 (207)
100 TIGR02080 O_succ_thio_ly O-suc 31.7 1.8E+02 0.004 24.9 6.6 66 6-71 112-179 (382)
101 TIGR02814 pfaD_fam PfaD family 31.2 1.3E+02 0.0029 26.6 5.7 61 4-65 39-107 (444)
102 PRK00087 4-hydroxy-3-methylbut 30.7 1.7E+02 0.0037 27.2 6.6 43 106-149 222-270 (647)
103 PRK06015 keto-hydroxyglutarate 30.0 2.6E+02 0.0057 21.9 6.6 51 121-173 87-146 (201)
104 PRK00912 ribonuclease P protei 29.8 2.8E+02 0.0061 21.9 8.7 58 11-68 83-142 (237)
105 cd01075 NAD_bind_Leu_Phe_Val_D 29.6 1.7E+02 0.0038 22.6 5.6 75 48-130 122-197 (200)
106 TIGR03070 couple_hipB transcri 29.3 61 0.0013 18.8 2.4 21 106-126 5-25 (58)
107 TIGR03849 arch_ComA phosphosul 29.1 54 0.0012 26.5 2.7 96 19-142 10-124 (237)
108 COG1603 RPP1 RNase P/RNase MRP 29.1 3E+02 0.0066 22.1 8.1 62 7-68 74-137 (229)
109 cd08583 PI-PLCc_GDPD_SF_unchar 28.4 1E+02 0.0022 24.3 4.2 21 48-68 195-215 (237)
110 PRK05939 hypothetical protein; 28.2 2.6E+02 0.0056 24.2 6.9 54 18-71 119-174 (397)
111 cd00019 AP2Ec AP endonuclease 28.2 2.3E+02 0.005 22.7 6.4 51 18-68 10-69 (279)
112 COG2949 SanA Uncharacterized m 27.8 2.9E+02 0.0063 22.1 6.3 18 2-19 86-103 (235)
113 cd02067 B12-binding B12 bindin 27.5 1.1E+02 0.0024 21.1 3.8 54 4-58 23-78 (119)
114 KOG0369 Pyruvate carboxylase [ 27.0 1.9E+02 0.004 27.5 5.9 46 21-68 96-141 (1176)
115 smart00481 POLIIIAc DNA polyme 27.0 72 0.0016 19.6 2.5 28 38-65 7-35 (67)
116 PF01053 Cys_Met_Meta_PP: Cys/ 26.7 1.7E+02 0.0036 25.4 5.5 60 15-74 125-187 (386)
117 PRK02901 O-succinylbenzoate sy 26.6 1.2E+02 0.0025 25.7 4.4 58 12-71 188-245 (327)
118 PRK09536 btuD corrinoid ABC tr 26.1 1.5E+02 0.0032 25.9 5.0 69 2-70 284-352 (402)
119 PRK08134 O-acetylhomoserine am 25.7 2E+02 0.0043 25.3 5.8 54 19-72 138-193 (433)
120 COG1992 Uncharacterized conser 25.0 77 0.0017 24.5 2.7 49 13-68 69-119 (181)
121 PRK13602 putative ribosomal pr 24.8 2E+02 0.0042 18.9 4.4 58 1-65 3-60 (82)
122 TIGR01927 menC_gamma/gm+ o-suc 24.8 1.3E+02 0.0028 25.0 4.4 60 12-71 210-270 (307)
123 PF13518 HTH_28: Helix-turn-he 24.5 98 0.0021 17.6 2.7 21 107-128 14-34 (52)
124 cd00614 CGS_like CGS_like: Cys 24.3 2.9E+02 0.0062 23.4 6.5 55 18-72 113-169 (369)
125 PRK05968 hypothetical protein; 24.3 3E+02 0.0065 23.6 6.7 54 18-71 136-190 (389)
126 PRK12397 propionate kinase; Re 24.3 2.6E+02 0.0055 24.6 6.1 118 3-151 166-291 (404)
127 KOG0053 Cystathionine beta-lya 24.1 1.5E+02 0.0032 26.0 4.6 53 21-73 153-207 (409)
128 PRK07058 acetate kinase; Provi 24.0 2.1E+02 0.0046 25.0 5.5 115 3-147 168-287 (396)
129 CHL00200 trpA tryptophan synth 24.0 2.4E+02 0.0052 23.0 5.6 29 32-60 93-121 (263)
130 PRK08334 translation initiatio 23.8 1.4E+02 0.0031 25.6 4.4 32 113-144 216-250 (356)
131 cd03314 MAL Methylaspartate am 23.8 1.8E+02 0.0038 25.1 5.0 56 11-66 264-320 (369)
132 PRK06361 hypothetical protein; 23.6 3.4E+02 0.0074 20.8 8.1 21 104-124 178-198 (212)
133 COG1149 MinD superfamily P-loo 23.3 1.2E+02 0.0027 25.1 3.7 50 18-71 201-252 (284)
134 PLN02509 cystathionine beta-ly 23.3 3E+02 0.0065 24.5 6.5 56 18-73 205-262 (464)
135 PRK08462 biotin carboxylase; V 23.2 1.4E+02 0.003 26.1 4.4 13 106-118 119-131 (445)
136 PF10120 Aldolase_2: Putative 23.1 86 0.0019 23.9 2.7 49 13-68 62-112 (170)
137 COG1889 NOP1 Fibrillarin-like 23.0 97 0.0021 24.7 3.0 48 6-58 76-124 (231)
138 COG1151 6Fe-6S prismane cluste 22.8 2.1E+02 0.0046 26.2 5.4 18 102-119 474-491 (576)
139 PRK08133 O-succinylhomoserine 22.6 3.8E+02 0.0081 23.0 6.9 54 18-71 134-189 (390)
140 TIGR01182 eda Entner-Doudoroff 22.6 2.9E+02 0.0063 21.7 5.6 56 1-63 50-106 (204)
141 PRK08861 cystathionine gamma-s 22.5 3.7E+02 0.008 23.2 6.8 64 10-73 118-183 (388)
142 COG2873 MET17 O-acetylhomoseri 22.5 2.5E+02 0.0054 24.6 5.5 58 17-74 134-193 (426)
143 TIGR02127 pyrF_sub2 orotidine 22.1 4.4E+02 0.0095 21.5 6.8 21 132-152 187-207 (261)
144 COG1038 PycA Pyruvate carboxyl 22.0 1.6E+02 0.0034 28.6 4.5 52 20-73 69-120 (1149)
145 PF09989 DUF2229: CoA enzyme a 21.7 1.7E+02 0.0037 23.2 4.3 35 31-65 183-219 (221)
146 PRK08248 O-acetylhomoserine am 21.6 4.1E+02 0.0089 23.2 7.0 57 14-70 133-191 (431)
147 PF01408 GFO_IDH_MocA: Oxidore 21.4 2.7E+02 0.0058 18.8 6.2 63 4-69 19-97 (120)
148 PF12651 RHH_3: Ribbon-helix-h 21.4 1.6E+02 0.0036 16.8 3.1 21 102-122 11-31 (44)
149 PF14658 EF-hand_9: EF-hand do 21.4 1.7E+02 0.0036 18.6 3.3 34 139-172 13-47 (66)
150 PF07862 Nif11: Nitrogen fixat 21.2 1.1E+02 0.0023 17.7 2.4 23 140-162 26-48 (49)
151 cd02070 corrinoid_protein_B12- 21.0 1.5E+02 0.0033 22.9 3.8 55 4-59 106-162 (201)
152 TIGR01324 cysta_beta_ly_B cyst 20.9 2E+02 0.0043 24.6 4.9 53 21-73 126-180 (377)
153 PRK12773 flhB flagellar biosyn 20.5 1.1E+02 0.0023 28.4 3.2 26 48-73 591-616 (646)
154 PF12728 HTH_17: Helix-turn-he 20.5 1.2E+02 0.0026 17.4 2.5 26 2-27 19-47 (51)
155 PLN02591 tryptophan synthase 20.4 2.6E+02 0.0056 22.7 5.1 28 32-59 80-107 (250)
156 COG0352 ThiE Thiamine monophos 20.2 3.4E+02 0.0074 21.4 5.6 52 11-63 105-163 (211)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7.3e-36 Score=246.17 Aligned_cols=178 Identities=47% Similarity=0.763 Sum_probs=155.9
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcCCC--ceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcccCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGVHP--ITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 77 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~~~--~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~ 77 (200)
|.+|+++|||||||+|+++++.++++....+ +.++|++||+++|+ .++++++.|++.||++++|+||++|+|||++.
T Consensus 150 L~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~ 229 (336)
T KOG1575|consen 150 LTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYK 229 (336)
T ss_pred HHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcc
Confidence 4689999999999999999999999988866 99999999999999 55779999999999999999999999999944
Q ss_pred C-CCCCCCcccccC----CCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhh
Q 029043 78 V-ESVPADSILHFF----PRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDS 152 (200)
Q Consensus 78 ~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a 152 (200)
. ...+.++.+... +.+..+ ...+..++++.++|+++|+|++|+||+|+++++.+++||||+++.+|++||++|
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~A 307 (336)
T KOG1575|consen 230 LGEDSRNGDKRFQFLGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGA 307 (336)
T ss_pred cccccccccccccccccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhh
Confidence 3 445555443322 222222 567889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCCCCCCCCCCc
Q 029043 153 LRIKLTKEDLKEISDAVPIEEVAGDRDP 180 (200)
Q Consensus 153 ~~~~Lt~~~~~~l~~~~~~~~~~~~~~~ 180 (200)
+...||++++.+|++..+.....++.+.
T Consensus 308 l~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 308 LSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred hhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 9999999999999999998877776653
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.1e-34 Score=241.79 Aligned_cols=168 Identities=42% Similarity=0.702 Sum_probs=152.6
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC-CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVE 79 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~ 79 (200)
|++|+++|||||+|+||++++.++++++. .+++++|.+||+++|+.+.+++++|+++|+++++|+||++|+|+|++...
T Consensus 141 L~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~ 220 (316)
T COG0667 141 LDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG 220 (316)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC
Confidence 57899999999999999999999999999 69999999999999988888999999999999999999999999996554
Q ss_pred CCCCCccccc-CCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCCC
Q 029043 80 SVPADSILHF-FPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLT 158 (200)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt 158 (200)
+. +.+.. .+.+..+..+.....+..++++|+++|+|++|+||+|++++|.++++|+|+++++||++|+++++..|+
T Consensus 221 --~~-~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~ 297 (316)
T COG0667 221 --PE-GSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLS 297 (316)
T ss_pred --cc-hhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCC
Confidence 22 23332 356667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 029043 159 KEDLKEISDAVPI 171 (200)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (200)
+++++.|++....
T Consensus 298 ~~~~~~l~~~~~~ 310 (316)
T COG0667 298 EEELAALDEISAE 310 (316)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988763
No 3
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.5e-32 Score=232.07 Aligned_cols=170 Identities=27% Similarity=0.374 Sum_probs=141.6
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhc------CCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHG------VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGG 74 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~------~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g 74 (200)
|++|+++||||+||+|||+.+.+++++. ...++++|++||++++..+.+++++|+++||++++|+||++|+|+|
T Consensus 164 L~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg 243 (346)
T PRK10625 164 LAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTG 243 (346)
T ss_pred HHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccC
Confidence 5789999999999999999988776543 2358899999999999877789999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcC
Q 029043 75 KAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR 154 (200)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~ 154 (200)
++.....+.+........|........++..+.++++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|+++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~ 323 (346)
T PRK10625 244 KYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLH 323 (346)
T ss_pred CCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhcc
Confidence 85433333322111112222222345677889999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCC
Q 029043 155 IKLTKEDLKEISDAVP 170 (200)
Q Consensus 155 ~~Lt~~~~~~l~~~~~ 170 (200)
++||++++++|+++.+
T Consensus 324 ~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 324 LTLSEEVLAEIEAVHQ 339 (346)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999875
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.8e-32 Score=226.44 Aligned_cols=167 Identities=28% Similarity=0.442 Sum_probs=137.3
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC------CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCcccC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV------HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFG 73 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~------~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~L~ 73 (200)
|++|+++||||+||+|||+.+.++++... .+++++|++||+++++. +.+++++|+++||++++|+||++|+|+
T Consensus 135 L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt 214 (317)
T TIGR01293 135 MTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS 214 (317)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC
Confidence 57899999999999999999888776432 57889999999999974 678999999999999999999999999
Q ss_pred CCCCCCCCCCCccccc--CCCCC----CcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHH
Q 029043 74 GKAVVESVPADSILHF--FPRYK----GENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLD 147 (200)
Q Consensus 74 g~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~ 147 (200)
|++... .+.+..+.. .+++. .+......+.++.++++|+++|+|++|+||+|++++|.++++|+|+++++|++
T Consensus 215 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~ 293 (317)
T TIGR01293 215 GKYDSG-IPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLM 293 (317)
T ss_pred CCCCCC-CCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHH
Confidence 985432 333222110 01111 11122356677889999999999999999999999999999999999999999
Q ss_pred HHHhhcCC--CCCHHHHHHHHhh
Q 029043 148 DNIDSLRI--KLTKEDLKEISDA 168 (200)
Q Consensus 148 enl~a~~~--~Lt~~~~~~l~~~ 168 (200)
+|+++++. +||++++++|+++
T Consensus 294 en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 294 ENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHhhccCCCCHHHHHHHHhh
Confidence 99999997 9999999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.98 E-value=2.4e-31 Score=224.68 Aligned_cols=170 Identities=23% Similarity=0.456 Sum_probs=138.5
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC-----CCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcccCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV-----HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGG 74 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~-----~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~L~g 74 (200)
|++|+++||||+||+|||+++.++++.+. .+++++|++||++++..+ .++++.|+++||++++|+||++|+|++
T Consensus 153 l~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~ 232 (346)
T PRK09912 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTG 232 (346)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccC
Confidence 57899999999999999999888765432 477899999999999755 579999999999999999999999999
Q ss_pred CCCCCCCCCCccccc----CCCCCCcc-hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHH
Q 029043 75 KAVVESVPADSILHF----FPRYKGEN-LDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDN 149 (200)
Q Consensus 75 ~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en 149 (200)
++... .|.+..... .+.|.... .+..++..+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|
T Consensus 233 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en 311 (346)
T PRK09912 233 KYLNG-IPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEEN 311 (346)
T ss_pred CCCCC-CCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHH
Confidence 85332 122111100 01121111 1345677789999999999999999999999999999999999999999999
Q ss_pred Hhhc-CCCCCHHHHHHHHhhCCC
Q 029043 150 IDSL-RIKLTKEDLKEISDAVPI 171 (200)
Q Consensus 150 l~a~-~~~Lt~~~~~~l~~~~~~ 171 (200)
++++ +++||++++++|++++..
T Consensus 312 ~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 312 VQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HhhhcCCCCCHHHHHHHHHhhCc
Confidence 9998 489999999999998864
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=99.97 E-value=2.9e-31 Score=214.96 Aligned_cols=138 Identities=30% Similarity=0.525 Sum_probs=126.8
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcc-cCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF-FGGKAV 77 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~-L~g~~~ 77 (200)
|++|+++||||+||||||+.+.++++++. ..++++|++||++.++. +++++|+++||.+.+||||++|. |...
T Consensus 126 lE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~-- 201 (280)
T COG0656 126 LEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN-- 201 (280)
T ss_pred HHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC--
Confidence 78999999999999999999999998777 56899999999999984 49999999999999999999753 2211
Q ss_pred CCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCC
Q 029043 78 VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKL 157 (200)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~L 157 (200)
+.+.++|++||.|++|++|+|+++++ +++||.+++++|+++|++++++.|
T Consensus 202 ----------------------------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~L 251 (280)
T COG0656 202 ----------------------------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFEL 251 (280)
T ss_pred ----------------------------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCC
Confidence 58999999999999999999999999 899999999999999999999999
Q ss_pred CHHHHHHHHhhCCCC
Q 029043 158 TKEDLKEISDAVPIE 172 (200)
Q Consensus 158 t~~~~~~l~~~~~~~ 172 (200)
|++||+.|+++....
T Consensus 252 s~ed~~~i~~l~~~~ 266 (280)
T COG0656 252 SEEDMAAIDALDRGY 266 (280)
T ss_pred CHHHHHHHHhhcccc
Confidence 999999999999865
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.97 E-value=7.2e-31 Score=215.56 Aligned_cols=159 Identities=34% Similarity=0.576 Sum_probs=130.4
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHH--hcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRA--HGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV 78 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~--~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~ 78 (200)
|++|+++||||+||+|||+++.++++ ....+|+++|++||++++....+++++|+++||++++|+|+++|+|+++...
T Consensus 122 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~ 201 (283)
T PF00248_consen 122 LEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKS 201 (283)
T ss_dssp HHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTT
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcccccccc
Confidence 57999999999999999999999999 5668899999999999777789999999999999999999999999988433
Q ss_pred CCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCCC
Q 029043 79 ESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLT 158 (200)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt 158 (200)
...+...... ....+....+.++++++|+|++|+||+|+++++.+.++|+|+++++|+++|+++++++||
T Consensus 202 ~~~~~~~~~~----------~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~ 271 (283)
T PF00248_consen 202 PPPPPSRASL----------RDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLT 271 (283)
T ss_dssp TTTSTTTSGS----------STHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--
T ss_pred CCCccccccc----------chhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCC
Confidence 2222211100 014456689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 029043 159 KEDLKEISDAV 169 (200)
Q Consensus 159 ~~~~~~l~~~~ 169 (200)
++++++|+++.
T Consensus 272 ~~~~~~i~~~~ 282 (283)
T PF00248_consen 272 EEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHTTH
T ss_pred HHHHHHHHhhh
Confidence 99999999864
No 8
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.97 E-value=1.8e-29 Score=206.24 Aligned_cols=138 Identities=26% Similarity=0.383 Sum_probs=124.5
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC---CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 77 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~---~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~ 77 (200)
|++|+++||||+||+|||+.+.++++++. .+++++|++||++++. .+++++|+++||++++|+||++|.+.+.
T Consensus 114 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~-- 189 (267)
T PRK11172 114 LLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD-- 189 (267)
T ss_pred HHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC--
Confidence 57899999999999999999998888664 3689999999999985 6899999999999999999999864321
Q ss_pred CCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCC
Q 029043 78 VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKL 157 (200)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~L 157 (200)
+.++++|+++|+|++|+||+|+++++ .++|+|+++++|+++|+++++++|
T Consensus 190 ----------------------------~~l~~~a~~~~~s~aqval~w~l~~~--~~~i~g~~~~~~l~~n~~~~~~~L 239 (267)
T PRK11172 190 ----------------------------PVIARIAAKHNATPAQVILAWAMQLG--YSVIPSSTKRENLASNLLAQDLQL 239 (267)
T ss_pred ----------------------------HHHHHHHHHhCCCHHHHHHHHHHhCC--CEeecCCCCHHHHHHHHhhcCCCc
Confidence 36889999999999999999999997 579999999999999999999999
Q ss_pred CHHHHHHHHhhCCCC
Q 029043 158 TKEDLKEISDAVPIE 172 (200)
Q Consensus 158 t~~~~~~l~~~~~~~ 172 (200)
|++++++|+++.++.
T Consensus 240 ~~~~~~~i~~~~~~~ 254 (267)
T PRK11172 240 DAEDMAAIAALDRNG 254 (267)
T ss_pred CHHHHHHHhhhccCC
Confidence 999999999998654
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.96 E-value=7.6e-29 Score=203.74 Aligned_cols=150 Identities=36% Similarity=0.649 Sum_probs=133.5
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV 78 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~ 78 (200)
|++|+++||||+||+|+|+++.+.+++.. .+++++|++||++++..+.+++++|+++||++++|+||++|.|+++...
T Consensus 133 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~ 212 (285)
T cd06660 133 LEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLP 212 (285)
T ss_pred HHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCC
Confidence 68999999999999999999999999888 8999999999999999766899999999999999999999998876322
Q ss_pred CCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCCC
Q 029043 79 ESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLT 158 (200)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt 158 (200)
..... .......+..++++++++++|+|++|++++|.++++|+|+++++|+++|+++...+||
T Consensus 213 ~~~~~-----------------~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~ 275 (285)
T cd06660 213 GAPPP-----------------EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELS 275 (285)
T ss_pred CCCCC-----------------hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCC
Confidence 11111 0114467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 029043 159 KEDLKEISD 167 (200)
Q Consensus 159 ~~~~~~l~~ 167 (200)
+++++.|++
T Consensus 276 ~~~~~~l~~ 284 (285)
T cd06660 276 DEDLAALDA 284 (285)
T ss_pred HHHHHHHhh
Confidence 999999976
No 10
>PLN02587 L-galactose dehydrogenase
Probab=99.96 E-value=1.3e-28 Score=205.38 Aligned_cols=155 Identities=19% Similarity=0.345 Sum_probs=130.0
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC-----CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV-----HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGK 75 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~-----~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~ 75 (200)
|++|+++||||+||+|||+++.+..+... ..+.++|++||++++.. .+++++|+++||++++|+||++|+|+++
T Consensus 137 l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~ 215 (314)
T PLN02587 137 LQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTEN 215 (314)
T ss_pred HHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCC
Confidence 67899999999999999998877766543 23444689999988754 5899999999999999999999999986
Q ss_pred CCCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcC-
Q 029043 76 AVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR- 154 (200)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~- 154 (200)
.... +. ...+...+.++.++++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|+++++
T Consensus 216 ~~~~-------------~~-~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~ 281 (314)
T PLN02587 216 GPPE-------------WH-PAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATE 281 (314)
T ss_pred CCCC-------------CC-CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhh
Confidence 3111 00 01134566778889999999999999999999999999999999999999999999976
Q ss_pred ---CCCCHHHHHHHHhhCC
Q 029043 155 ---IKLTKEDLKEISDAVP 170 (200)
Q Consensus 155 ---~~Lt~~~~~~l~~~~~ 170 (200)
.+|+++++++|+++..
T Consensus 282 ~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 282 LETSGIDEELLSEVEAILA 300 (314)
T ss_pred cccCCCCHHHHHHHHHhhc
Confidence 3799999999999885
No 11
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.96 E-value=7.6e-29 Score=204.88 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=130.0
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcCCCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcccCCCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVE 79 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~ 79 (200)
|++|+++||||+||+|||+++.+..+....+++++|++||++++..+ .+++++|+++||++++|+||++|+|++...
T Consensus 127 l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~-- 204 (292)
T PRK14863 127 LQALKDQGLFAKIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD-- 204 (292)
T ss_pred HHHHHHcCCcceEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--
Confidence 57899999999999999999998888877899999999999999754 579999999999999999999999975311
Q ss_pred CCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCCCH
Q 029043 80 SVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTK 159 (200)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~ 159 (200)
..+. ...+....+..+.+++.+.++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.++++
T Consensus 205 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~ 271 (292)
T PRK14863 205 RVPA-------------QLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPD 271 (292)
T ss_pred cCcc-------------chhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCc
Confidence 0000 011233556777888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 029043 160 EDLKEISDA 168 (200)
Q Consensus 160 ~~~~~l~~~ 168 (200)
..+++|..-
T Consensus 272 ~~~~~l~~~ 280 (292)
T PRK14863 272 LDWDDMAID 280 (292)
T ss_pred cchhhccCC
Confidence 888777543
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=99.96 E-value=4.2e-28 Score=200.33 Aligned_cols=139 Identities=28% Similarity=0.484 Sum_probs=125.0
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVES 80 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~ 80 (200)
|++|+++||||+||+|||+.+.++++.+..+++++|++||++++. ..+++++|+++||++++|+||+++..
T Consensus 150 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~-------- 220 (290)
T PRK10376 150 LAELQRQGLVRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTP-------- 220 (290)
T ss_pred HHHHHHCCceeEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCCh--------
Confidence 578999999999999999999999999888999999999999987 46799999999999999999973210
Q ss_pred CCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCCCHH
Q 029043 81 VPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKE 160 (200)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~ 160 (200)
+ ..+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++++|+++
T Consensus 221 ------------~----------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e 278 (290)
T PRK10376 221 ------------L----------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEE 278 (290)
T ss_pred ------------h----------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHH
Confidence 0 015788999999999999999999999777899999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 029043 161 DLKEISDAVP 170 (200)
Q Consensus 161 ~~~~l~~~~~ 170 (200)
+++.|+++.+
T Consensus 279 ~~~~l~~~~~ 288 (290)
T PRK10376 279 VLAELDGIAR 288 (290)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 13
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=99.95 E-value=4e-27 Score=191.26 Aligned_cols=144 Identities=28% Similarity=0.469 Sum_probs=128.1
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV 78 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~ 78 (200)
|+++++.|++|+||||||+...+++++.. .++.++|+++|+..++ .+++++|+++||.+.+||||+++-- ..
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~---~~- 217 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR---GS- 217 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC---cc-
Confidence 68999999999999999999999999887 7899999999998887 6799999999999999999998731 00
Q ss_pred CCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCCC
Q 029043 79 ESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLT 158 (200)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt 158 (200)
.-. .-+.+.++|+++|.|++|++|||+++++ +++||.++|+++++||++++++.||
T Consensus 218 ~ll----------------------~~~~l~~iA~K~~kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~Lt 273 (300)
T KOG1577|consen 218 DLL----------------------EDPVLKEIAKKYNKTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFELT 273 (300)
T ss_pred ccc----------------------cCHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhccccCC
Confidence 000 0168999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCC
Q 029043 159 KEDLKEISDAVPIEEV 174 (200)
Q Consensus 159 ~~~~~~l~~~~~~~~~ 174 (200)
++|++.|+....+.+.
T Consensus 274 ~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 274 EEDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHHhhcccccee
Confidence 9999999988776653
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.95 E-value=8.5e-27 Score=191.22 Aligned_cols=141 Identities=27% Similarity=0.378 Sum_probs=123.0
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV 78 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~ 78 (200)
|++|+++||||+||+|||+++.+++++.. .++.++|++||++.+. .+++++|+++||++++|+||++|. +.
T Consensus 123 l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~---~~-- 195 (275)
T PRK11565 123 MIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG---KG-- 195 (275)
T ss_pred HHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC---cc--
Confidence 57899999999999999999999888754 3578999999999885 679999999999999999999773 00
Q ss_pred CCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCCC
Q 029043 79 ESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLT 158 (200)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt 158 (200)
. +. .+.+.++|+++|+|++|+||+|+++++ .++|+|+++++|+++|+++++++||
T Consensus 196 -~------------~~----------~~~l~~ia~~~g~s~aq~aL~w~l~~~--~~~I~g~~~~~~i~~n~~a~~~~Ls 250 (275)
T PRK11565 196 -V------------FD----------QKVIRDLADKYGKTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVFDFRLD 250 (275)
T ss_pred -c------------cc----------CHHHHHHHHHhCCCHHHHHHHHHHcCC--CEeeCCCCCHHHHHHHHhccCCCcC
Confidence 0 00 047889999999999999999999997 5699999999999999999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 029043 159 KEDLKEISDAVPIEE 173 (200)
Q Consensus 159 ~~~~~~l~~~~~~~~ 173 (200)
++++++|+++..+.+
T Consensus 251 ~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 251 KDELGEIAKLDQGKR 265 (275)
T ss_pred HHHHHHHHhhcccCC
Confidence 999999999986543
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.91 E-value=6.5e-24 Score=166.96 Aligned_cols=150 Identities=23% Similarity=0.388 Sum_probs=131.5
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC--CCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcccCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 77 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~--~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~ 77 (200)
|..|.++||+|++||||+++.+++-+.+. .++.++|++.|+++.. ...+.+++|+++.|..++||||++|-++.+.
T Consensus 142 f~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~- 220 (298)
T COG4989 142 FTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD- 220 (298)
T ss_pred HHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-
Confidence 46899999999999999999998877666 4578999999999987 4478999999999999999999998554221
Q ss_pred CCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCC
Q 029043 78 VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYK-CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIK 156 (200)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g-~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~ 156 (200)
....+..+.+..+|+++| .|..+++++|++.+|.-..+|+|+.+++++++.+++++..
T Consensus 221 ---------------------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~ 279 (298)
T COG4989 221 ---------------------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLT 279 (298)
T ss_pred ---------------------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhcc
Confidence 123556678999999999 7999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCCC
Q 029043 157 LTKEDLKEISDAVPIE 172 (200)
Q Consensus 157 Lt~~~~~~l~~~~~~~ 172 (200)
||.++|-+|..+..+.
T Consensus 280 LtRqqWf~Iy~Aa~G~ 295 (298)
T COG4989 280 LTRQQWFEIYTAAIGN 295 (298)
T ss_pred ccHHHHHHHHHHhccC
Confidence 9999999999887544
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=172.41 Aligned_cols=142 Identities=22% Similarity=0.340 Sum_probs=125.4
Q ss_pred ChHHHHcCCccEEEecCCC-HHHHHHHhcCCCceEEcccCCCCCccch--hhHHHHHHHhCCeEeecccccCcccCCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEAS-PDTIRRAHGVHPITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAV 77 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~-~~~~~~~~~~~~~~~~q~~ynll~~~~~--~~~l~~~~~~gi~vi~~~pla~G~L~g~~~ 77 (200)
++++|++||||++|+|.|+ .+.+.+++...++|++|++||++|.+.. .+.+..|.++|+||+.++|+.+|-|..+.
T Consensus 136 ~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v- 214 (391)
T COG1453 136 LEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV- 214 (391)
T ss_pred HHHHHhcCcEEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC-
Confidence 4789999999999999996 6788999999999999999999999843 48999999999999999999999765321
Q ss_pred CCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCC
Q 029043 78 VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYK--CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 155 (200)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~ 155 (200)
| +++.++++++. .||++.|+||++++|.|+++++|+++++|++||++.++.
T Consensus 215 ----P-----------------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~ 267 (391)
T COG1453 215 ----P-----------------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASE 267 (391)
T ss_pred ----C-----------------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhh
Confidence 1 58889998876 579999999999999999999999999999999998865
Q ss_pred --C-CCHHHHHHHHhhCC
Q 029043 156 --K-LTKEDLKEISDAVP 170 (200)
Q Consensus 156 --~-Lt~~~~~~l~~~~~ 170 (200)
+ ||++|++.|.++-+
T Consensus 268 ~~p~lte~e~~il~~v~~ 285 (391)
T COG1453 268 LEPSLTEEELQILEKVEE 285 (391)
T ss_pred cCCccCHHHHHHHHHHHH
Confidence 4 99999988887643
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.87 E-value=1.7e-21 Score=154.64 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=132.8
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC--CCceEEc--ccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCC
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 76 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~--~~~~~~q--~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~ 76 (200)
|++||++||||+||+|.++.+.+.++.+. +..+++. .+|++.|.. ....++..+.+|++|++.++++.|+|+.+.
T Consensus 163 Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~g 241 (342)
T KOG1576|consen 163 LEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQG 241 (342)
T ss_pred HHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcCC
Confidence 58899999999999999999999999887 4578888 689998887 478899999999999999999999999876
Q ss_pred CCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCC
Q 029043 77 VVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIK 156 (200)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~ 156 (200)
+..+.|. ..+..+...+..++|++.|+++..+|++|.++.++++++++|+++.++++.|+++....
T Consensus 242 p~~wHPa--------------S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ 307 (342)
T KOG1576|consen 242 PPPWHPA--------------SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDR 307 (342)
T ss_pred CCCCCCC--------------CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhcc
Confidence 6666555 35678888899999999999999999999999999999999999999999999988778
Q ss_pred CCHHHHHHHHh
Q 029043 157 LTKEDLKEISD 167 (200)
Q Consensus 157 Lt~~~~~~l~~ 167 (200)
||..+-++...
T Consensus 308 ls~~~~Qevl~ 318 (342)
T KOG1576|consen 308 LSSKHEQEVLR 318 (342)
T ss_pred ccchhHHHHHH
Confidence 88744444333
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00034 Score=55.61 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=53.7
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecc
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 65 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~ 65 (200)
|++++.+|||..+|+|.++..+++++++. ..|.+.|+...-.=. .-.++..||.+++|.+...+
T Consensus 162 LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCv-vPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 162 LEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCV-VPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeecccccc-CCHHHHHHhhhcceeeeecC
Confidence 68999999999999999999999999988 567888887654222 23789999999999987654
No 19
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=89.25 E-value=0.21 Score=42.67 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=37.3
Q ss_pred cCCccEEEecCCCHHHHHHHhcCC-CceEEcccCCCCCccchhhHHHHHHHhCCe
Q 029043 7 EGKIKYIGLSEASPDTIRRAHGVH-PITAVQMEWSLWTRDIEEEIIPLCRELGIG 60 (200)
Q Consensus 7 ~GkIr~iGvS~~~~~~~~~~~~~~-~~~~~q~~ynll~~~~~~~~l~~~~~~gi~ 60 (200)
-|+|||+||--++++.+.++.... .-+..+.+..++-...+..++..+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 489999999999999999887763 233444444443333356777777777765
No 20
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=84.44 E-value=6.7 Score=31.25 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=57.1
Q ss_pred CCHHHHHHHhcCCCceEEcc----cCCCCCccc---hhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCcccccC
Q 029043 18 ASPDTIRRAHGVHPITAVQM----EWSLWTRDI---EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFF 90 (200)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~q~----~ynll~~~~---~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~~ 90 (200)
.++++++.+.+...+.++-+ +||.++... -.++.++++..|-.-+.+.|+..|--.+.
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~--------------- 113 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT--------------- 113 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc---------------
Confidence 35677887777766555544 677766652 27899999999999999999987531110
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHcCCC
Q 029043 91 PRYKGENLDRNKNIYFRIENLAKKYKCT 118 (200)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s 118 (200)
........+.++.|+.+.+++|++
T Consensus 114 ----~vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 114 ----AVRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred ----ccchHHHHHHHHHhhHHHHHhCcc
Confidence 112234677888999999999874
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=82.25 E-value=11 Score=30.76 Aligned_cols=62 Identities=10% Similarity=-0.033 Sum_probs=39.1
Q ss_pred HcCCccEEEec-CCCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeeccccc
Q 029043 6 EEGKIKYIGLS-EASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 6 ~~GkIr~iGvS-~~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla 68 (200)
++|+. -+|+- ..+...+.+++.. .++.++-.+-.+++.....+++..|+..|+..+++.|-.
T Consensus 15 ~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 15 AAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 34764 45532 2222344444444 345555557788887755788899999999888877665
No 22
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=79.95 E-value=4.7 Score=33.97 Aligned_cols=69 Identities=14% Similarity=0.336 Sum_probs=44.2
Q ss_pred hhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHH----
Q 029043 47 EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQL---- 122 (200)
Q Consensus 47 ~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~---- 122 (200)
..+++++|++.||.++. ||+... -..+.++++++.-.+
T Consensus 92 ~~~Lke~a~~~Gi~~~S-SPfd~~-------------------------------------svd~l~~~~~~ayKIaS~E 133 (347)
T COG2089 92 HAQLKEYARKRGIIFFS-SPFDLT-------------------------------------AVDLLESLNPPAYKIASGE 133 (347)
T ss_pred HHHHHHHHHHcCeEEEe-cCCCHH-------------------------------------HHHHHHhcCCCeEEecCcc
Confidence 37899999999998876 777743 112223333322111
Q ss_pred -----HHHHHHhCCCCeEeecCCCChHhHHHHHhhc
Q 029043 123 -----ALAWVLGQGDDVVPIPGTTKIKNLDDNIDSL 153 (200)
Q Consensus 123 -----al~~~l~~~~v~~~i~G~~~~~~l~enl~a~ 153 (200)
.|.|+.+.......-.|+.+.+++++.++.+
T Consensus 134 ~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~ 169 (347)
T COG2089 134 INDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAIL 169 (347)
T ss_pred ccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHH
Confidence 3566666665577777888888888877665
No 23
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=78.75 E-value=9 Score=28.28 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=62.0
Q ss_pred CccEEEecCCCHHHHHHHhcCCCceEEcccCC-CCCccchhhHHHHHHHhCCeE-eeccccc-CcccCCCCCCCCCCCCc
Q 029043 9 KIKYIGLSEASPDTIRRAHGVHPITAVQMEWS-LWTRDIEEEIIPLCRELGIGI-VPYSPLG-RGFFGGKAVVESVPADS 85 (200)
Q Consensus 9 kIr~iGvS~~~~~~~~~~~~~~~~~~~q~~yn-ll~~~~~~~~l~~~~~~gi~v-i~~~pla-~G~L~g~~~~~~~~~~~ 85 (200)
+.--+.|...+...+..++....+|++..++. -.........+..+.++|+.+ +.++|+- .. +
T Consensus 24 ~~divav~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~~~---~----------- 89 (150)
T PF01876_consen 24 KYDIVAVRPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLRSD---G----------- 89 (150)
T ss_dssp --SEEEEE-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS----H-----------
T ss_pred CceEEEEEcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhccC---c-----------
Confidence 45567788888888999999999999999884 223334578999999999987 6666665 11 0
Q ss_pred ccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcC----CCCCHHH
Q 029043 86 ILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR----IKLTKED 161 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~----~~Lt~~~ 161 (200)
..+... ++-.+..++++...+ .++-.|+++.-+++.-.+... +.+++++
T Consensus 90 ----------------~~r~~~---------~~~~~~l~~~~~~~~--iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~~ 142 (150)
T PF01876_consen 90 ----------------SNRRNF---------ISNARRLIRLTKKKN--IIISSGASSPLELRSPRDVINLLALLGLSEEE 142 (150)
T ss_dssp ----------------HHHHHH---------HHHHHHHHHHHHH----EEEE---SSGGG---HHHHHHHHHHTT--HHH
T ss_pred ----------------HHHHHH---------HHHHHHHHHHhCCCC--EEEEcCCCChhhCcCHHHHHHHHHHhCCCHHH
Confidence 000011 122345677777766 788889999988887655544 2666655
Q ss_pred HHH
Q 029043 162 LKE 164 (200)
Q Consensus 162 ~~~ 164 (200)
..+
T Consensus 143 a~~ 145 (150)
T PF01876_consen 143 AKK 145 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 24
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=78.08 E-value=20 Score=29.38 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=59.6
Q ss_pred HcCCccEEEe-cCCCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCC
Q 029043 6 EEGKIKYIGL-SEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 82 (200)
Q Consensus 6 ~~GkIr~iGv-S~~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~ 82 (200)
++|+. -+|+ ...+...+.+++.. .++.++-.+-.+++......++..++..|+..+++.|-..
T Consensus 14 ~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~------------- 79 (267)
T PRK10128 14 RKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS------------- 79 (267)
T ss_pred HcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC-------------
Confidence 34765 3443 22222334444444 3444455577888887557788888888988877766441
Q ss_pred CCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCC
Q 029043 83 ADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 155 (200)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~ 155 (200)
...+..+|..+.-..++|-..|.++.++.+++...
T Consensus 80 --------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 --------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred --------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 12445566666666667777777777777666665
No 25
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=77.58 E-value=20 Score=29.01 Aligned_cols=62 Identities=11% Similarity=-0.058 Sum_probs=38.1
Q ss_pred HcCCccEEEe-cCCCHHHHHHHhcCC--CceEEcccCCCCCccchhhHHHHHHHhCCeEeeccccc
Q 029043 6 EEGKIKYIGL-SEASPDTIRRAHGVH--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 6 ~~GkIr~iGv-S~~~~~~~~~~~~~~--~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla 68 (200)
++|+. -+|+ .+.+...+.+++... ++.++-.+-.+++...-..++..++..|+..+++.|-.
T Consensus 8 ~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 8 LARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 44664 3553 233323444444443 44444557788777755788888888998888877655
No 26
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.38 E-value=3.9 Score=33.03 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=22.1
Q ss_pred HHHHHHhCCCCeEeecCCCChHhHHHHHhhc
Q 029043 123 ALAWVLGQGDDVVPIPGTTKIKNLDDNIDSL 153 (200)
Q Consensus 123 al~~~l~~~~v~~~i~G~~~~~~l~enl~a~ 153 (200)
.|+.+.+.+....+-.|+++.+++++.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 4777777776688889999999999999888
No 27
>PHA02128 hypothetical protein
Probab=75.59 E-value=6 Score=27.80 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=45.1
Q ss_pred hHHHHcCCccEEEecCCCHHHHHHHh-----------------cC-CCceEEc---ccCCCCCccchhhHHHHHHHhCCe
Q 029043 2 KKLVEEGKIKYIGLSEASPDTIRRAH-----------------GV-HPITAVQ---MEWSLWTRDIEEEIIPLCRELGIG 60 (200)
Q Consensus 2 ~~L~~~GkIr~iGvS~~~~~~~~~~~-----------------~~-~~~~~~q---~~ynll~~~~~~~~l~~~~~~gi~ 60 (200)
.++..+|-+|-|-+..-+-..++.++ +. ..+.+++ .+|.+..|....++.+|+-.+|+.
T Consensus 67 ne~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwagthgve 146 (151)
T PHA02128 67 NEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWAGTHGVE 146 (151)
T ss_pred HHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhcccCceE
Confidence 46788899999888776554544432 22 2233344 389998888779999999999998
Q ss_pred Eeec
Q 029043 61 IVPY 64 (200)
Q Consensus 61 vi~~ 64 (200)
++.+
T Consensus 147 fvim 150 (151)
T PHA02128 147 FVIM 150 (151)
T ss_pred EEEe
Confidence 8765
No 28
>PRK06424 transcription factor; Provisional
Probab=70.50 E-value=16 Score=27.15 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=43.5
Q ss_pred chhhHHHHHHHhCCeEeec---ccccCc--ccCCCC--CCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCC
Q 029043 46 IEEEIIPLCRELGIGIVPY---SPLGRG--FFGGKA--VVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT 118 (200)
Q Consensus 46 ~~~~~l~~~~~~gi~vi~~---~pla~G--~L~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 118 (200)
.+..+-+.|.+.|..+..+ +|...- .-+... ..........+.. ..+..+..+........++.+-++.|+|
T Consensus 21 ~~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~Ir~lRe~~GLS 99 (144)
T PRK06424 21 AILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYK-KKASDEDLDIVEDYAELVKNARERLSMS 99 (144)
T ss_pred eeeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCcc-CcccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4688999999999999888 455321 000000 0000000000011 1111122223344556778888889999
Q ss_pred HHHHHHHHHHh
Q 029043 119 SAQLALAWVLG 129 (200)
Q Consensus 119 ~~q~al~~~l~ 129 (200)
..++|-+--.+
T Consensus 100 Q~eLA~~iGvs 110 (144)
T PRK06424 100 QADLAAKIFER 110 (144)
T ss_pred HHHHHHHhCCC
Confidence 99988655433
No 29
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=69.00 E-value=10 Score=32.15 Aligned_cols=20 Identities=25% Similarity=0.640 Sum_probs=16.6
Q ss_pred hhHHHHHHHhCCeEeeccccc
Q 029043 48 EEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 48 ~~~l~~~~~~gi~vi~~~pla 68 (200)
..+.++|++.||.+++ +|+.
T Consensus 79 ~~L~~~~~~~Gi~~~s-tpfd 98 (329)
T TIGR03569 79 RELKEYCESKGIEFLS-TPFD 98 (329)
T ss_pred HHHHHHHHHhCCcEEE-EeCC
Confidence 7899999999999877 5555
No 30
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=68.54 E-value=14 Score=24.43 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 029043 99 DRNKNIYFRIENLAKKYKCTSAQLALAWV 127 (200)
Q Consensus 99 ~~~~~~~~~l~~ia~~~g~s~~q~al~~~ 127 (200)
++..+.+.+|.++|++.|++..++|.-.+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57789999999999999999999987554
No 31
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=68.47 E-value=19 Score=29.53 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=16.2
Q ss_pred ceEEcccCCCCCccchhhHHHHHHHhC
Q 029043 32 ITAVQMEWSLWTRDIEEEIIPLCRELG 58 (200)
Q Consensus 32 ~~~~q~~ynll~~~~~~~~l~~~~~~g 58 (200)
+.+++.-||++.+.-...++..|++.|
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~G 122 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAG 122 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcC
Confidence 678899999966643333344444443
No 32
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=67.02 E-value=6.4 Score=27.21 Aligned_cols=55 Identities=24% Similarity=0.187 Sum_probs=42.0
Q ss_pred cCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcc
Q 029043 16 SEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 16 S~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
|.++.+.++++++..-++++|+.....--- .-..+.+.|+++|+.++..+. ..|+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i 58 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGI 58 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcH
Confidence 567888999999988889999976553221 237899999999999999887 5543
No 33
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=66.49 E-value=62 Score=26.12 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=34.7
Q ss_pred HHcCCccEEEe--cCCCHHHHHHHhcC-CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccc
Q 029043 5 VEEGKIKYIGL--SEASPDTIRRAHGV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 67 (200)
Q Consensus 5 ~~~GkIr~iGv--S~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pl 67 (200)
.++|+. -+|+ +.-++..++.+... .++.++-.+-++++...-..++..++..|..++.+.|-
T Consensus 7 l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~ 71 (249)
T TIGR02311 7 LKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI 71 (249)
T ss_pred HHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC
Confidence 345775 3443 33344444444443 34444455777766653455777777778777776543
No 34
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=64.35 E-value=42 Score=28.15 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=37.3
Q ss_pred hHHHHcCCccEEEecC---------CCHHHHHHHhcCCCceEEcccCCCCCc--cchhhHHHHHHHhCCeEeecccccCc
Q 029043 2 KKLVEEGKIKYIGLSE---------ASPDTIRRAHGVHPITAVQMEWSLWTR--DIEEEIIPLCRELGIGIVPYSPLGRG 70 (200)
Q Consensus 2 ~~L~~~GkIr~iGvS~---------~~~~~~~~~~~~~~~~~~q~~ynll~~--~~~~~~l~~~~~~gi~vi~~~pla~G 70 (200)
+.|++-|.+..+.+.+ .+.+.++.+.+.+....+.++.|-... ..-.+.+..+++.|+.+...+++..|
T Consensus 160 ~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~g 239 (321)
T TIGR03822 160 ARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRG 239 (321)
T ss_pred HHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCC
Confidence 4566666665444433 233344444443322334444431100 11256677777888888888888877
Q ss_pred c
Q 029043 71 F 71 (200)
Q Consensus 71 ~ 71 (200)
.
T Consensus 240 v 240 (321)
T TIGR03822 240 V 240 (321)
T ss_pred C
Confidence 5
No 35
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=62.28 E-value=22 Score=28.06 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=48.9
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcc
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
+|++...+. ..+-|-++.+.+.++++...++++|+..+.+-.- .-.++...|+++|+.++..+.+..|+
T Consensus 139 ~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i 209 (229)
T cd00308 139 ALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSI 209 (229)
T ss_pred HHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHH
Confidence 456665554 3344556777777888888889999877664332 12688999999999999887766554
No 36
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=59.33 E-value=53 Score=26.77 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=53.4
Q ss_pred EEEecCCCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCccccc
Q 029043 12 YIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHF 89 (200)
Q Consensus 12 ~iGvS~~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~ 89 (200)
-+.+-+++++.++++++. +..-++-+ |..... ..++++.++++|..++...--..|. |
T Consensus 71 plsIDT~~~~v~eaaL~~~~G~~iINsI--s~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P------- 130 (261)
T PRK07535 71 PLCIDSPNPAAIEAGLKVAKGPPLINSV--SAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------P------- 130 (261)
T ss_pred CEEEeCCCHHHHHHHHHhCCCCCEEEeC--CCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------C-------
Confidence 367778888889888887 43333333 222211 2578999999999998764332332 0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHH
Q 029043 90 FPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLAL 124 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al 124 (200)
...+...+..+.+.+.+.++|+++.++.+
T Consensus 131 ------~t~~~~~~~l~~~v~~a~~~GI~~~~Iil 159 (261)
T PRK07535 131 ------KDAEDRLAVAKELVEKADEYGIPPEDIYI 159 (261)
T ss_pred ------CCHHHHHHHHHHHHHHHHHcCCCHhHEEE
Confidence 01123455666777778888887766543
No 37
>TIGR03586 PseI pseudaminic acid synthase.
Probab=58.15 E-value=22 Score=30.16 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=16.1
Q ss_pred hhHHHHHHHhCCeEeeccccc
Q 029043 48 EEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 48 ~~~l~~~~~~gi~vi~~~pla 68 (200)
.++.++|++.|+.+++ +|+.
T Consensus 80 ~~L~~~~~~~Gi~~~s-tpfd 99 (327)
T TIGR03586 80 KELFERAKELGLTIFS-SPFD 99 (327)
T ss_pred HHHHHHHHHhCCcEEE-ccCC
Confidence 5788999999999977 4544
No 38
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.20 E-value=62 Score=23.99 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=42.8
Q ss_pred EEEecCCC--HHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcc
Q 029043 12 YIGLSEAS--PDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 12 ~iGvS~~~--~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
-+|...|+ ...+..+++...|+++-. -+.+.+ .+.+..+.+.++.+++.|.+.+|.
T Consensus 19 k~GlDgHd~gakvia~~l~d~GfeVi~~---g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFEVINL---GLFQTP-EEAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred ccCccccccchHHHHHHHHhCCceEEec---CCcCCH-HHHHHHHHhcCCCEEEEEeccchH
Confidence 35777776 467788888888876644 333443 689999999999999999999886
No 39
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=55.45 E-value=96 Score=24.27 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=67.1
Q ss_pred cCCccEEEecCCCHHHHHHHhcC---CCceEEcccCCCCCccchhhHHHHHHHhCC-eEeecccccCcccCCCCCCCCCC
Q 029043 7 EGKIKYIGLSEASPDTIRRAHGV---HPITAVQMEWSLWTRDIEEEIIPLCRELGI-GIVPYSPLGRGFFGGKAVVESVP 82 (200)
Q Consensus 7 ~GkIr~iGvS~~~~~~~~~~~~~---~~~~~~q~~ynll~~~~~~~~l~~~~~~gi-~vi~~~pla~G~L~g~~~~~~~~ 82 (200)
+.++-.| +...+.+.+.+..+. ..+.++|+.++-- .....+-..+++++. .+++-+++. +.
T Consensus 9 ~~~~~~v-~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~--~~~~~i~~l~~~~~~~~~iGaGTV~----~~-------- 73 (206)
T PRK09140 9 KLPLIAI-LRGITPDEALAHVGALIEAGFRAIEIPLNSP--DPFDSIAALVKALGDRALIGAGTVL----SP-------- 73 (206)
T ss_pred hCCEEEE-EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc--cHHHHHHHHHHHcCCCcEEeEEecC----CH--------
Confidence 3344344 445566655544433 6788999988653 334566677777774 333322222 21
Q ss_pred CCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCH--HHHHHHHHHhCCCCeEeecCCCChHhHHHHHhh----cC--
Q 029043 83 ADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTS--AQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDS----LR-- 154 (200)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~--~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a----~~-- 154 (200)
+.++...+...++-++| ..-.+++....+ ..+++|+.|++++.+..+. ..
T Consensus 74 --------------------~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~--~~~~~G~~t~~E~~~A~~~Gad~vk~F 131 (206)
T PRK09140 74 --------------------EQVDRLADAGGRLIVTPNTDPEVIRRAVALG--MVVMPGVATPTEAFAALRAGAQALKLF 131 (206)
T ss_pred --------------------HHHHHHHHcCCCEEECCCCCHHHHHHHHHCC--CcEEcccCCHHHHHHHHHcCCCEEEEC
Confidence 01111111111222222 123445555665 6788899999988887532 11
Q ss_pred --CCCCHHHHHHHHhhCC
Q 029043 155 --IKLTKEDLKEISDAVP 170 (200)
Q Consensus 155 --~~Lt~~~~~~l~~~~~ 170 (200)
..+..+.++.+...++
T Consensus 132 pa~~~G~~~l~~l~~~~~ 149 (206)
T PRK09140 132 PASQLGPAGIKALRAVLP 149 (206)
T ss_pred CCCCCCHHHHHHHHhhcC
Confidence 1456666777776664
No 40
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=55.34 E-value=1.2e+02 Score=26.44 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=64.7
Q ss_pred HHHHcCCccEEEecCCCHH----HHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeE---eecccccCcccCCC
Q 029043 3 KLVEEGKIKYIGLSEASPD----TIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGI---VPYSPLGRGFFGGK 75 (200)
Q Consensus 3 ~L~~~GkIr~iGvS~~~~~----~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~v---i~~~pla~G~L~g~ 75 (200)
++.++=.||-+|+=+.+-. +..+++...-=+...+-.++ ..+.-=.|-++|..+ ++++||. |+.=|.
T Consensus 165 ~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HL-----GNGASicAiknGkSvDTSMGfTPLe-Gl~MGT 238 (396)
T COG0282 165 ELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHL-----GNGASICAIKNGKSVDTSMGFTPLE-GLMMGT 238 (396)
T ss_pred HHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEe-----cCchhhhhhhCCeeeccCCCCCccc-ceeccC
Confidence 5677788999999887643 34445554322445555555 233333344666644 7888988 443333
Q ss_pred CCCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCC-hHhHHHHH
Q 029043 76 AVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTK-IKNLDDNI 150 (200)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~-~~~l~enl 150 (200)
+. ...++ ..+.-+++..|+|+.|+. -.|.+..-..=+.|-++ ...++++.
T Consensus 239 Rs-GdiDP----------------------~ii~~l~~~~~~s~~~i~--~~LNkkSGllGlSg~ssD~R~l~~~~ 289 (396)
T COG0282 239 RS-GDIDP----------------------GIILYLMEQEGMSAEEID--TLLNKKSGLLGLSGLSSDMRDLEEAA 289 (396)
T ss_pred CC-CCCCh----------------------HHHHHHHHhcCCCHHHHH--HHHhhhccccccccccchHHHHHHHh
Confidence 21 12222 366677888899998854 33444322333445333 55555544
No 41
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.57 E-value=31 Score=28.62 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=49.9
Q ss_pred hHHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcc
Q 029043 2 KKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 2 ~~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
.+|++...|. ..|=+-++.+.++++++....+++|+.-+.+-.- .-.++...|+++|+.++..+-+..|+
T Consensus 221 ~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i 292 (316)
T cd03319 221 AYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSL 292 (316)
T ss_pred HHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHH
Confidence 3455555555 3344557888899999988899999976654322 23789999999999998876665444
No 42
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=53.82 E-value=45 Score=26.35 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=41.1
Q ss_pred HHHHcCC-ccEEEecC-CCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhC-CeEee
Q 029043 3 KLVEEGK-IKYIGLSE-ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELG-IGIVP 63 (200)
Q Consensus 3 ~L~~~Gk-Ir~iGvS~-~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~g-i~vi~ 63 (200)
++.+... +..+||.. .+.+.+.+++....++++|++-.. +.+.++..++.. +.++-
T Consensus 45 ~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~~~~~l~~~~~~~v~k 103 (208)
T COG0135 45 EIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPEYIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHhhcCCceEE
Confidence 3444444 78999874 678899999999999999998773 456777777664 55443
No 43
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=52.86 E-value=30 Score=28.99 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=50.4
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcc
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
+|+++..+. ..|=|.++...++.+++..-++++|+..+.+-.- .-..+...|+.+|+.++..+.+..|+
T Consensus 217 ~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 217 ELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccH
Confidence 444443333 5566778889999999988899999877654332 12789999999999998876666554
No 44
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=52.75 E-value=40 Score=26.31 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=53.6
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHh--cCCCceEEcccCCCCCccc-----hhhHHHHHHHhCCeEeecccccCcc
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAH--GVHPITAVQMEWSLWTRDI-----EEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~--~~~~~~~~q~~ynll~~~~-----~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
|+++.+-|+---+++.||.-+..+--+ .-.-|..-..+|+..+..- -.++-++|++.|+.+.-..++..+.
T Consensus 95 L~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 95 LEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 467778888788999999766554332 3344566778888877751 2889999999999999999998764
No 45
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=52.11 E-value=69 Score=26.53 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCChHhHHHHH
Q 029043 106 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 150 (200)
Q Consensus 106 ~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 150 (200)
.+|.++|.+.|. ++.++-..|+.... ...+..|+|+|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 488889998875 57888889998764 478889999999876654
No 46
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=51.14 E-value=32 Score=27.75 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=48.9
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcc
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
+|++.-.+. ..|=|-++...+.++++...++++|+..+..-.- .-..+...|+++|+.++..+.+.+|+
T Consensus 174 ~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 174 ALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHH
Confidence 455544443 3444557788888888888889999977765432 23789999999999998876666554
No 47
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=51.12 E-value=76 Score=26.53 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHh
Q 029043 106 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNID 151 (200)
Q Consensus 106 ~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~ 151 (200)
.+|.++|++.|. +..++-..|+.... ...+..|+|+|+.+-+.+-
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHHH
Confidence 588889998875 57899999996654 5788899999998766543
No 48
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=50.46 E-value=86 Score=25.12 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=34.8
Q ss_pred EEecCC-----CHHHHHHHhcCCCceEEcccCC------C-CCccchhhHHHHHHHhCCeEeecccccC
Q 029043 13 IGLSEA-----SPDTIRRAHGVHPITAVQMEWS------L-WTRDIEEEIIPLCRELGIGIVPYSPLGR 69 (200)
Q Consensus 13 iGvS~~-----~~~~~~~~~~~~~~~~~q~~yn------l-l~~~~~~~~l~~~~~~gi~vi~~~pla~ 69 (200)
+|+|++ +.....+.+....++.+++..+ . +....-.++.+.++++|+.+.++.+...
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 566654 4455555555566777776321 0 1111126688899999999988877543
No 49
>PF14502 HTH_41: Helix-turn-helix domain
Probab=50.21 E-value=22 Score=21.11 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHhCCCCeE
Q 029043 105 YFRIENLAKKYKCT--SAQLALAWVLGQGDDVV 135 (200)
Q Consensus 105 ~~~l~~ia~~~g~s--~~q~al~~~l~~~~v~~ 135 (200)
++.+.++++++++| ..|-||.++-..+.|..
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 35788899999887 68999999999986543
No 50
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=49.14 E-value=97 Score=26.04 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=39.5
Q ss_pred HHHcCCccEEEecC----CCHH----HHHHHhcCCCceEE-cccCCCC---CccchhhHHHHHHHhCCeEeecccccCcc
Q 029043 4 LVEEGKIKYIGLSE----ASPD----TIRRAHGVHPITAV-QMEWSLW---TRDIEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 4 L~~~GkIr~iGvS~----~~~~----~~~~~~~~~~~~~~-q~~ynll---~~~~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
|..-..++.+|+.+ ..++ .+.+.+....+..+ ++++|=. +.. -.+.+..+++.|+.+...+++..|+
T Consensus 168 l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~-~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 168 LEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAE-VADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHH-HHHHHHHHHHcCCEEEecceeeCCC
Confidence 44446677777764 2222 22233333333333 4566521 111 2668888899999999999999885
No 51
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=48.13 E-value=40 Score=29.19 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=50.0
Q ss_pred hHHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCc
Q 029043 2 KKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 70 (200)
Q Consensus 2 ~~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G 70 (200)
.+|++...+- ..|-|.++...+.++++..-++++|+.....-.- .-.++...|+.+|+.++..+....|
T Consensus 254 ~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~e~~ 324 (395)
T cd03323 254 AEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNNHLG 324 (395)
T ss_pred HHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 3556655544 5566667888899998888899999877654322 1278999999999999887765434
No 52
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=46.66 E-value=1.5e+02 Score=23.83 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=53.0
Q ss_pred EEecCCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCcccccCCC
Q 029043 13 IGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPR 92 (200)
Q Consensus 13 iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~~~~ 92 (200)
+.+-+++++.++++++.+..-++-+ +....+ .++++.++++|..++.+..-..|. .. ...+.
T Consensus 79 iSIDT~~~~v~~aaL~~g~~iINdi--s~~~~~--~~~~~l~~~~~~~vV~m~~~~~~~----~~----------~~~~~ 140 (258)
T cd00423 79 ISVDTFNAEVAEAALKAGADIINDV--SGGRGD--PEMAPLAAEYGAPVVLMHMDGTPQ----TM----------QNNPY 140 (258)
T ss_pred EEEeCCcHHHHHHHHHhCCCEEEeC--CCCCCC--hHHHHHHHHcCCCEEEECcCCCCc----cc----------ccCCC
Confidence 7888899999999998873322222 332221 578999999999998876433221 00 00111
Q ss_pred CCCcchhhhHHHHHHHHHHHHHcCCCHHH
Q 029043 93 YKGENLDRNKNIYFRIENLAKKYKCTSAQ 121 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~ia~~~g~s~~q 121 (200)
| ....++..+.++..-+.+.+.|++..+
T Consensus 141 ~-~~~~~~~~~~~~~~i~~~~~~Gi~~~~ 168 (258)
T cd00423 141 Y-ADVVDEVVEFLEERVEAATEAGIPPED 168 (258)
T ss_pred c-chHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 1 223344556666666666777765433
No 53
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=45.28 E-value=63 Score=25.72 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=10.8
Q ss_pred cCCCChHhHHHHHhhcC
Q 029043 138 PGTTKIKNLDDNIDSLR 154 (200)
Q Consensus 138 ~G~~~~~~l~enl~a~~ 154 (200)
.|..+++++.+.++.+.
T Consensus 169 ~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 169 VGLATPEEVAELVKALR 185 (265)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 56677777776665543
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=44.92 E-value=21 Score=25.96 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=22.3
Q ss_pred CccchhhHHHHHHHhCCeEeeccccc
Q 029043 43 TRDIEEEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 43 ~~~~~~~~l~~~~~~gi~vi~~~pla 68 (200)
.++...++++.|++.||.+++|-.+.
T Consensus 42 ~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 42 KRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 35556899999999999999998876
No 55
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.67 E-value=89 Score=25.04 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCce--EEcc-----cCCCCCccc---------hhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCC
Q 029043 20 PDTIRRAHGVHPIT--AVQM-----EWSLWTRDI---------EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPA 83 (200)
Q Consensus 20 ~~~~~~~~~~~~~~--~~q~-----~ynll~~~~---------~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~ 83 (200)
...+++.++...+. .+.. .+|++.... -...+++|++.|...+...|...|.. .
T Consensus 49 ~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~-----~----- 118 (275)
T PRK09856 49 IKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYL-----T----- 118 (275)
T ss_pred HHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCC-----C-----
Confidence 45566666664443 3321 356544431 15677899999999987766443310 0
Q ss_pred CcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCC
Q 029043 84 DSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT 118 (200)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 118 (200)
-..+.+....+.++.+.++|+++|+.
T Consensus 119 ---------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 119 ---------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 01234566777888888999998874
No 56
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=43.62 E-value=1.6e+02 Score=25.83 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=33.8
Q ss_pred hHHHHcCCccEEEecCCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcc
Q 029043 2 KKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 2 ~~L~~~GkIr~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
+.|+++| |..|+-+.....+..++... -.=|+|...+ ..+++.|+++++.+ .|+.|+
T Consensus 169 ~~~~~~~--R~~giVSRGGs~~~~WM~~~------~~ENPlye~f-D~lLeI~~~yDVtl----SLGDgl 225 (423)
T TIGR00190 169 ERLKRSG--RITGIVSRGGAILAAWMLHH------HKENPLYKNF-DYILEIAKEYDVTL----SLGDGL 225 (423)
T ss_pred HHHHhCC--CccCeecCcHHHHHHHHHHc------CCcCchHHHH-HHHHHHHHHhCeee----eccCCc
Confidence 3444444 44555555544444433221 1235555554 57999999999999 677776
No 57
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=43.59 E-value=57 Score=27.78 Aligned_cols=66 Identities=12% Similarity=-0.058 Sum_probs=49.2
Q ss_pred hHHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccc
Q 029043 2 KKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPL 67 (200)
Q Consensus 2 ~~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pl 67 (200)
.+|++...+. ..|=|.++...++.+++..-++++|+.....-.- .-.++.+.|+++|+.++..+..
T Consensus 207 ~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 207 RLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 3566665554 6677778889999999888899999987654322 1278999999999999876543
No 58
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=42.92 E-value=1.2e+02 Score=25.13 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCChHhHHHHH
Q 029043 106 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 150 (200)
Q Consensus 106 ~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 150 (200)
.+|.++|++.|. ++.++-..|..... ...+..|+|+|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCHHHHHHH
Confidence 588899998875 57889999988765 478899999999886654
No 59
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=42.32 E-value=48 Score=28.25 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=48.8
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcc
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
+|++..-+. ..|=|-++...+..++...-++++|+.....-.- .-..+...|+.+|+.++..+.+.+|+
T Consensus 232 ~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i 302 (368)
T TIGR02534 232 RLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPI 302 (368)
T ss_pred HHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHH
Confidence 455554443 6677778888888888888888999876654321 12789999999999987765555443
No 60
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=41.59 E-value=1.8e+02 Score=25.60 Aligned_cols=27 Identities=15% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCCCccchhhHHHHHHHhCCeEeecccccCcc
Q 029043 40 SLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 40 nll~~~~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
|+|...+ ..+++.|+++++.+ .|+.|+
T Consensus 202 NPlye~f-D~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 202 NPLYEHF-DYLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred CchHHHH-HHHHHHHHHhCeee----eccCCc
Confidence 5555554 57999999999999 677776
No 61
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=41.33 E-value=45 Score=28.33 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=47.4
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcc
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
+|+++..|. ..|=|-++...+..+++..-++++|+....+-.- .-.++...|+++|+.++..+....|+
T Consensus 233 ~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i 303 (365)
T cd03318 233 RLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSI 303 (365)
T ss_pred HHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHH
Confidence 455554444 5556667888888888887788888866554221 23788999999999988655454443
No 62
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=40.05 E-value=49 Score=20.63 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCHHHHH
Q 029043 107 RIENLAKKYKCTSAQLA 123 (200)
Q Consensus 107 ~l~~ia~~~g~s~~q~a 123 (200)
.+++||+.+|+|..++.
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999998865
No 63
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=40.00 E-value=44 Score=20.95 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 029043 107 RIENLAKKYKCTSAQLALAWVL 128 (200)
Q Consensus 107 ~l~~ia~~~g~s~~q~al~~~l 128 (200)
.+-+||..+|+++.+++..|+-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4568999999999999999974
No 64
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=39.52 E-value=1.2e+02 Score=25.69 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=44.1
Q ss_pred ccEEEecCCCHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCcccC
Q 029043 10 IKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFG 73 (200)
Q Consensus 10 Ir~iGvS~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~L~ 73 (200)
++..-+...+++.+++++.. .+..++..+-|+.-... -.++.+.|+++|+-++.=.+.+.+++.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 34444445577888887754 45556667778754332 378999999999999888887666544
No 65
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=39.45 E-value=1.3e+02 Score=21.28 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCCCHHHHHHHHhhCCC
Q 029043 102 KNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPI 171 (200)
Q Consensus 102 ~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~~ 171 (200)
.+.+..+.+...+++++..++|.=- =..+++++++...+..++.++++++++.|-+....
T Consensus 54 ~e~i~~~~~~L~~~~L~k~E~~~i~----------Nl~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~ 113 (118)
T smart00657 54 REIVRAVRTLLKSKKLHKFEIAQLG----------NLRPETAEEAQLLIPSLEERIDEEELEELLDDLSS 113 (118)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHh----------CCCCCCHHHHHHHhhhhhccCCHHHHHHHHHHHHH
Confidence 4555677777778898888866321 12467899999999999888999999998876654
No 66
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=39.39 E-value=1.3e+02 Score=26.37 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=54.3
Q ss_pred HHHHcCCccEEEecCCCHHHHHHHhc--CCCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcccCCC
Q 029043 3 KLVEEGKIKYIGLSEASPDTIRRAHG--VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK 75 (200)
Q Consensus 3 ~L~~~GkIr~iGvS~~~~~~~~~~~~--~~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~L~g~ 75 (200)
.+-++.-|....+...+.+.+.+++. ..+...+..+=|++.+-.+ ..+.+.|+++|+-++.=.+++.+.+...
T Consensus 121 ~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~P 196 (396)
T COG0626 121 KILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRP 196 (396)
T ss_pred HHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccCh
Confidence 34445556666666666655555543 5788888999999888655 7889999999999999999998876654
No 67
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=39.35 E-value=1.1e+02 Score=25.57 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=52.1
Q ss_pred hhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHH
Q 029043 47 EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC------TSA 120 (200)
Q Consensus 47 ~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~ 120 (200)
...+.+.+.+.++-++..++--+.- .+|.++|++.|. ++.
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSSNs----------------------------------~rL~eiA~~~g~~aylId~~~ 248 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSSNS----------------------------------NRLAEIAKRHGKPAYLIDDAE 248 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCccH----------------------------------HHHHHHHHHhCCCeEEeCChH
Confidence 3667777778787777654443210 489999999988 467
Q ss_pred HHHHHHHHhCCCCeEeecCCCChHhHHHHHh
Q 029043 121 QLALAWVLGQGDDVVPIPGTTKIKNLDDNID 151 (200)
Q Consensus 121 q~al~~~l~~~~v~~~i~G~~~~~~l~enl~ 151 (200)
++=..|+.... ...+-.|+|+|+-+-+++-
T Consensus 249 ei~~~w~~~~~-~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 249 EIDPEWLKGVK-TVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred hCCHHHhcCcc-EEEEecCCCCCHHHHHHHH
Confidence 88888988844 4788889999999888764
No 68
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=38.88 E-value=80 Score=27.38 Aligned_cols=65 Identities=8% Similarity=-0.094 Sum_probs=48.3
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccc
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPL 67 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pl 67 (200)
+|++.-.|. ..|=|-++...++.+++..-++++|+...-.-.- .-..+.+.|+.+|+.++..+..
T Consensus 251 ~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 251 LIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 455554444 5667778899999999988899999977654322 2378999999999999876554
No 69
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=38.85 E-value=2.4e+02 Score=28.63 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=52.2
Q ss_pred EEecCCCHHHHHHHhcCCCceEEcccCCCCC--ccchhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCcccccC
Q 029043 13 IGLSEASPDTIRRAHGVHPITAVQMEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFF 90 (200)
Q Consensus 13 iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~--~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~~ 90 (200)
|-+-+..++.++.+++..+-..+-+.-|..+ .+. .++++.|+++|..++++.--..|.
T Consensus 434 lsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~-~~~~~l~~kyga~vV~m~~de~G~------------------- 493 (1229)
T PRK09490 434 IMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKF-IEHARLVRRYGAAVVVMAFDEQGQ------------------- 493 (1229)
T ss_pred EEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCCC-------------------
Confidence 5566777888888888733223333444433 222 479999999999999986544443
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHH-cCCCH
Q 029043 91 PRYKGENLDRNKNIYFRIENLAKK-YKCTS 119 (200)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~ia~~-~g~s~ 119 (200)
+...++.++.++++-+.+.+ +|+++
T Consensus 494 ----~~t~e~r~~ia~r~~~~~~~~~Gi~~ 519 (1229)
T PRK09490 494 ----ADTRERKIEICKRAYDILTEEVGFPP 519 (1229)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 11234556677777776654 77754
No 70
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=38.36 E-value=12 Score=25.12 Aligned_cols=16 Identities=19% Similarity=0.652 Sum_probs=13.6
Q ss_pred hHHHHcCCccEEE-ecC
Q 029043 2 KKLVEEGKIKYIG-LSE 17 (200)
Q Consensus 2 ~~L~~~GkIr~iG-vS~ 17 (200)
++|++.|.||++| |++
T Consensus 56 QdLv~~gfir~~g~vG~ 72 (84)
T cd04436 56 QDLLNQGFLRLVGGVGS 72 (84)
T ss_pred HHHHhCchHHHhcccCc
Confidence 5789999999999 654
No 71
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=38.32 E-value=1.3e+02 Score=26.02 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=44.9
Q ss_pred HcCCccEEEecCCCHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCcc
Q 029043 6 EEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 6 ~~GkIr~iGvS~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
+.+.++.+-+...+.+.+++++.. .+..++..+-|+.-+-. ..++.++|+++|+-++.=.+.+.|.
T Consensus 121 ~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 121 KKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred HhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 344466666666677888887753 45556666666644432 2788999999999998888777654
No 72
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=38.13 E-value=46 Score=23.27 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=34.5
Q ss_pred CHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecc
Q 029043 19 SPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 65 (200)
Q Consensus 19 ~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~ 65 (200)
+.+.+.+++.....+.+-..|..+.-+ .++-+.|+++|+.+++=+
T Consensus 62 ~~e~I~~ia~~~g~~~i~pGyg~lse~--~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 62 NIEAIIDIARKEGADAIHPGYGFLSEN--AEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp SHHHHHHHHHHTTESEEESTSSTTTTH--HHHHHHHHHTT-EESSS-
T ss_pred cHHHHhhHhhhhcCcccccccchhHHH--HHHHHHHHHCCCEEECcC
Confidence 567777777777888888888887776 678888999999887643
No 73
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=37.83 E-value=2.1e+02 Score=22.77 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=34.4
Q ss_pred chhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcCCCC
Q 029043 97 NLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKL 157 (200)
Q Consensus 97 ~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~L 157 (200)
...+.+.....+..++++|+.+. +++-. ...+.+.+++.+|......+++..
T Consensus 147 ~Rar~L~~~r~~l~L~rKYd~P~-------VISS~--A~s~~~lRsPRdl~aL~~~iGme~ 198 (216)
T PRK03892 147 ERANILRFMMKAWQLVNKYKVPR-------FITSS--AESKWEVRGPRDLMSLGINIGMEI 198 (216)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCE-------EEecC--cchhccCCCHHHHHHHHHHhCCCH
Confidence 34566777778888888887652 23333 355667788888887777766543
No 74
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=37.78 E-value=2.2e+02 Score=23.08 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=52.4
Q ss_pred EEecCCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCcccccCCC
Q 029043 13 IGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPR 92 (200)
Q Consensus 13 iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~~~~ 92 (200)
+.+-++.++.++++++.+..-++- .+....+ .++++.++++|..++.+-. .|. .+. ....+.
T Consensus 79 lSIDT~~~~v~e~al~~G~~iINd--isg~~~~--~~~~~l~~~~~~~vV~m~~--~g~--p~~----------~~~~~~ 140 (257)
T cd00739 79 ISVDTFRAEVARAALEAGADIIND--VSGGSDD--PAMLEVAAEYGAPLVLMHM--RGT--PKT----------MQENPY 140 (257)
T ss_pred EEEeCCCHHHHHHHHHhCCCEEEe--CCCCCCC--hHHHHHHHHcCCCEEEECC--CCC--Ccc----------cccCCC
Confidence 777888899999998875322222 2333222 5789999999999998443 231 000 000111
Q ss_pred CCCcchhhhHHHHHHHHHHHHHcCCCHHH
Q 029043 93 YKGENLDRNKNIYFRIENLAKKYKCTSAQ 121 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~ia~~~g~s~~q 121 (200)
| ..-..+..+..+..-+.|.++|++..+
T Consensus 141 ~-~~~~~~~~~~~~~~i~~~~~~Gi~~~~ 168 (257)
T cd00739 141 Y-EDVVDEVLSFLEARLEAAESAGVARNR 168 (257)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 1 222344555666666777888876444
No 75
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.68 E-value=84 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.099 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 029043 99 DRNKNIYFRIENLAKKYKCTSAQLALAWV 127 (200)
Q Consensus 99 ~~~~~~~~~l~~ia~~~g~s~~q~al~~~ 127 (200)
..+.++...+.++|++.|+|+.++.-.|.
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~~~~a 72 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVAATAA 72 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56778889999999999999988876654
No 76
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=37.13 E-value=1.8e+02 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=35.9
Q ss_pred EEEecCCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccc
Q 029043 12 YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 67 (200)
Q Consensus 12 ~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pl 67 (200)
-+.+-++.++.++++++. ..+++-...+.-+ ..++++.++++|..++.+-.-
T Consensus 74 plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 74 PLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred EEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 466667888888888877 3443333333211 468999999999999887665
No 77
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.11 E-value=74 Score=27.96 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=42.4
Q ss_pred HHHcCCccEEEecCCCHHHHHHHhcC--------CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecc
Q 029043 4 LVEEGKIKYIGLSEASPDTIRRAHGV--------HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 65 (200)
Q Consensus 4 L~~~GkIr~iGvS~~~~~~~~~~~~~--------~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~ 65 (200)
+=+.|-+-.+|..+.+++++++.++. .+|-++.+ .+.-++..+.+.++.+.++||.++..+
T Consensus 34 vs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 34 MGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred HHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEec
Confidence 34688899999999998887765433 35666554 233233335788999999999877654
No 78
>PRK14017 galactonate dehydratase; Provisional
Probab=36.90 E-value=81 Score=27.04 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=48.4
Q ss_pred hHHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCc-cchhhHHHHHHHhCCeEeeccc
Q 029043 2 KKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSP 66 (200)
Q Consensus 2 ~~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~-~~~~~~l~~~~~~gi~vi~~~p 66 (200)
.+|+++..+. ..|=|.++...++.+++..-++++|+..+.+-. ..-..+.+.|+.+|+.++..+.
T Consensus 221 ~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 221 PEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 3455555444 556677888999999998888999998776432 1237899999999999987654
No 79
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=36.76 E-value=88 Score=24.53 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=35.6
Q ss_pred cCCccEEEec-CCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHH-hCCeEe
Q 029043 7 EGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRE-LGIGIV 62 (200)
Q Consensus 7 ~GkIr~iGvS-~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~-~gi~vi 62 (200)
.+++..+||. +.+++.+.++++...++++|++-+. ..+.+...++ .++.++
T Consensus 52 ~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e-----~~~~~~~l~~~~~~~ii 104 (210)
T PRK01222 52 PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDE-----TPEFCRQLKRRYGLPVI 104 (210)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHhhcCCcEE
Confidence 3568899987 5688999999999999999998653 2334444444 345443
No 80
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=36.48 E-value=68 Score=27.07 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=44.2
Q ss_pred EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCc
Q 029043 12 YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 70 (200)
Q Consensus 12 ~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G 70 (200)
..|=|-++.+.+..+++..-++++|+..+.+-.- .-.++...|+.+|+.++..+....|
T Consensus 232 a~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 232 CLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred EeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccch
Confidence 5566678888899999888889999977654332 2378999999999998775555444
No 81
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=35.27 E-value=49 Score=19.23 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=27.5
Q ss_pred CCCChHhHHHHHhhcCCC-CCHHHHHHHHhhCCCC
Q 029043 139 GTTKIKNLDDNIDSLRIK-LTKEDLKEISDAVPIE 172 (200)
Q Consensus 139 G~~~~~~l~enl~a~~~~-Lt~~~~~~l~~~~~~~ 172 (200)
|.-+.+++...+..++.. ++++++..|-..++..
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~ 37 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD 37 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC
Confidence 344678899999877888 9999999998887754
No 82
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.26 E-value=90 Score=26.30 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=46.1
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeec
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPY 64 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~ 64 (200)
+|+++..|. ..|=|.++...++.+++..-++++|+..+..-.- .-.++...|+.+|+.++..
T Consensus 216 ~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 216 ELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred HHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 466665555 5666778888999999888899999977654322 2378999999999998764
No 83
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=34.93 E-value=91 Score=26.24 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=46.0
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeeccc
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSP 66 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~p 66 (200)
+|++.-.|. ..|=|.++++.+.++++..-++++|+.....-.- .-.++...|+++|+.++..+-
T Consensus 234 ~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 234 RLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 455554444 3445557888999999888899999987664322 237899999999999877653
No 84
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=34.58 E-value=1.3e+02 Score=27.96 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=51.9
Q ss_pred hhHHHHHHHhCCeEeeccc---ccCcccCCCCCCCCCCCCcccccCCCCCCcchhhhHHHHHHHH-HHHHHcCCCH----
Q 029043 48 EEIIPLCRELGIGIVPYSP---LGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIE-NLAKKYKCTS---- 119 (200)
Q Consensus 48 ~~~l~~~~~~gi~vi~~~p---la~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ia~~~g~s~---- 119 (200)
..+.+||++++|.++.-+| |..|+-. .-++...+.|.+......+|..+.+. .+..+||++.
T Consensus 58 ~ala~f~~e~~I~lVvvGPE~PL~~Gl~~----------~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~ 127 (788)
T KOG0237|consen 58 EALASFCKEHNINLVVVGPELPLVAGLAD----------VLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYK 127 (788)
T ss_pred HHHHHHHHHcceeEEEECCchhhhhhhhh----------hhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceee
Confidence 6799999999999988765 5555411 11133456676666666666666554 6788899854
Q ss_pred ----HHHHHHHHHhCCC
Q 029043 120 ----AQLALAWVLGQGD 132 (200)
Q Consensus 120 ----~q~al~~~l~~~~ 132 (200)
.+-|..|+.+.+.
T Consensus 128 ~ft~~e~a~sfi~~~~~ 144 (788)
T KOG0237|consen 128 TFTDPEEAKSFIQSATD 144 (788)
T ss_pred eeCCHHHHHHHHHhCCC
Confidence 5678999999883
No 85
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=34.54 E-value=19 Score=31.99 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=28.9
Q ss_pred CCccEEEecCCCHHHHHHHhcCCC-ceEEcccCCCCCccchhhHHHHHHHhCC
Q 029043 8 GKIKYIGLSEASPDTIRRAHGVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGI 59 (200)
Q Consensus 8 GkIr~iGvS~~~~~~~~~~~~~~~-~~~~q~~ynll~~~~~~~~l~~~~~~gi 59 (200)
|.+|++|+..++.+.+.++..... -+.++....++-...+.+++..+++.||
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi 316 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGI 316 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCC
Confidence 568999999998888877766522 2333333333222223444444444433
No 86
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.38 E-value=96 Score=26.27 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=45.0
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecc
Q 029043 3 KLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYS 65 (200)
Q Consensus 3 ~L~~~GkIr-~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~ 65 (200)
+|+++.-+. ..|=|.++.+.+..+++..-++++|+.....-.- .-..+.+.|+++|+.++..+
T Consensus 221 ~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 221 EIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 455443333 5566677888888888887889999986654321 23789999999999998654
No 87
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=33.89 E-value=21 Score=24.49 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcC-------CCCCHHHHHHHHhhCC
Q 029043 102 KNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR-------IKLTKEDLKEISDAVP 170 (200)
Q Consensus 102 ~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~-------~~Lt~~~~~~l~~~~~ 170 (200)
.+.++.++.+++..|+.+..-... .+.+| -....+|.-+.+++++.++..+ .+||..+...|++.++
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q-~~~~~-~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQ-KRRKP-DPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEe-cCCCC-CcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 455678888998888765542221 22233 3678889999999999887654 3999999999999884
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=33.42 E-value=1.5e+02 Score=22.98 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=43.3
Q ss_pred HHHHcCCccEEEecCCCHHHHHHHhcCCCceEEcccCC-CCCccchhhHHHHHHHhCCeEeecccccCc
Q 029043 3 KLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWS-LWTRDIEEEIIPLCRELGIGIVPYSPLGRG 70 (200)
Q Consensus 3 ~L~~~GkIr~iGvS~~~~~~~~~~~~~~~~~~~q~~yn-ll~~~~~~~~l~~~~~~gi~vi~~~pla~G 70 (200)
.|.+.|- ..+-.+-.+.+.+.++++-....++-+..+ .-.......+++.|++.||..+.++.+...
T Consensus 39 ~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 39 QLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEeccc
Confidence 4556665 355566667888888888766555555433 212223488999999999999988888755
No 89
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=33.36 E-value=3.1e+02 Score=27.67 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=37.7
Q ss_pred EEecCCCHHHHHHHhcCCCceEEcccCCCC--CccchhhHHHHHHHhCCeEeecccccCc
Q 029043 13 IGLSEASPDTIRRAHGVHPITAVQMEWSLW--TRDIEEEIIPLCRELGIGIVPYSPLGRG 70 (200)
Q Consensus 13 iGvS~~~~~~~~~~~~~~~~~~~q~~ynll--~~~~~~~~l~~~~~~gi~vi~~~pla~G 70 (200)
|-+-++.++.++.+++..+-..+-+.-|.. +.+. .++++.++++|..++.+.--..|
T Consensus 418 lsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~-~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 418 LMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERF-IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred EEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 566677888899888873222233344443 2332 47999999999999998644444
No 90
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=33.34 E-value=41 Score=24.44 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=31.5
Q ss_pred hhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCC
Q 029043 48 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT 118 (200)
Q Consensus 48 ~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 118 (200)
.-+++.|++.|+.++--.+--.|... .|.+=..+...+...+++.+|+++|..
T Consensus 39 ~l~L~~~k~~g~~~lfVi~PvNg~wy------------------dytG~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 39 QLLLDVCKELGIDVLFVIQPVNGKWY------------------DYTGLSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHTT-EEEEEE----HHHH------------------HHTT--HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHcCCceEEEecCCcHHHH------------------HHhCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 67899999999977666655555311 112223455677788999999998863
No 91
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=33.24 E-value=2.7e+02 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=16.9
Q ss_pred hhHHHHHHHhCCeEeecccccCcc
Q 029043 48 EEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 48 ~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
.+.++.+++.|+.+..-+++..|.
T Consensus 240 ~~ai~~L~~aGi~v~~qtvLl~gv 263 (331)
T TIGR00238 240 AEAMKKLRTVNVTLLNQSVLLRGV 263 (331)
T ss_pred HHHHHHHHHcCCEEEeecceECCc
Confidence 455566677778777777777764
No 92
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=32.96 E-value=72 Score=26.41 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCChHhHHHHH
Q 029043 106 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 150 (200)
Q Consensus 106 ~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 150 (200)
.+|.++|+++|. ++.++...|+.... ...+..|+|+|+.+-+.+
T Consensus 225 ~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 225 RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 588899999886 57899999988876 478999999999887765
No 93
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=32.84 E-value=86 Score=16.92 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHH
Q 029043 103 NIYFRIENLAKKYKCTSAQLA 123 (200)
Q Consensus 103 ~~~~~l~~ia~~~g~s~~q~a 123 (200)
+..+.+.++|++.|.|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 455789999999999987754
No 94
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=32.65 E-value=50 Score=26.54 Aligned_cols=51 Identities=12% Similarity=0.301 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHH---HHhCCCCeEeecCCCChHhHHHHHhh
Q 029043 101 NKNIYFRIENLAKKYKCTSAQLALAW---VLGQGDDVVPIPGTTKIKNLDDNIDS 152 (200)
Q Consensus 101 ~~~~~~~l~~ia~~~g~s~~q~al~~---~l~~~~v~~~i~G~~~~~~l~enl~a 152 (200)
.-+.+.++..||.-|++++.+++..| ++++..- ..-+...+++.+++.+..
T Consensus 8 ~~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~-~~~l~~~~L~~F~~~lq~ 61 (253)
T PF08418_consen 8 DPDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLD-DTKLTLDNLDQFKQYLQD 61 (253)
T ss_dssp -HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-S-C----TTTTTGGGTTTSG
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC-cCcCCHHHHHHHHHHHHH
Confidence 35677899999999999999999998 5666532 333677777777776644
No 95
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=32.64 E-value=1.8e+02 Score=24.86 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=42.4
Q ss_pred cEEEecCCCHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCccc
Q 029043 11 KYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 72 (200)
Q Consensus 11 r~iGvS~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~L 72 (200)
+..-+...+++.++++++. .+..++..+.|+.-.-. ..++.+.|+++|+-++.=.+.+.|..
T Consensus 112 ~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~ 175 (378)
T TIGR01329 112 VVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL 175 (378)
T ss_pred EEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence 3333444567888887764 45666666777654432 37889999999999998887766643
No 96
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=32.45 E-value=1.5e+02 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.8
Q ss_pred hhhHHHHHHHhCCeEeec
Q 029043 47 EEEIIPLCRELGIGIVPY 64 (200)
Q Consensus 47 ~~~~l~~~~~~gi~vi~~ 64 (200)
...+++.|+++||.++.-
T Consensus 60 L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 60 LRPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHHhCCCCEEEe
Confidence 378999999999999875
No 97
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=32.43 E-value=1.4e+02 Score=20.78 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeeccccc
Q 029043 17 EASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla 68 (200)
.-+.+.+..++...+++++-+-----.+....++.+.++++||++-.+.+-+
T Consensus 38 ~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~a 89 (109)
T cd00248 38 DLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGA 89 (109)
T ss_pred cCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHH
Confidence 3456777776654446666552222113334789999999999998876644
No 98
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=32.20 E-value=1.2e+02 Score=26.66 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=43.5
Q ss_pred EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccc
Q 029043 12 YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPL 67 (200)
Q Consensus 12 ~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pl 67 (200)
..+-|.++.+.++++++..-.+++|+..+-+-.- .-.++.++|+.+|+.++..+..
T Consensus 301 ~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 301 VADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred EecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 3455667888999999888889999987754332 1388999999999999887665
No 99
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=32.05 E-value=54 Score=25.70 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=28.3
Q ss_pred CCccEEEec-CCCHHHHHHHhcCCCceEEcccCC
Q 029043 8 GKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWS 40 (200)
Q Consensus 8 GkIr~iGvS-~~~~~~~~~~~~~~~~~~~q~~yn 40 (200)
+.++.+||. |.+++.+.++++...++++|++-+
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 557889986 778999999999999999999864
No 100
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=31.74 E-value=1.8e+02 Score=24.88 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=43.4
Q ss_pred HcCCccEEEecCCCHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCcc
Q 029043 6 EEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 6 ~~GkIr~iGvS~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
..+.+...-+...+.+.++++++. .+..++..+-|+.-.-. ...+.+.|+++|+-++.=.+.+.|.
T Consensus 112 ~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 112 KKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPA 179 (382)
T ss_pred hhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 344444444455677888888754 45555555666644432 2688899999999998877776554
No 101
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=31.16 E-value=1.3e+02 Score=26.62 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=42.4
Q ss_pred HHHcCCccEEEecCCCHHHHHHHhcC-------CC-ceEEcccCCCCCccchhhHHHHHHHhCCeEeecc
Q 029043 4 LVEEGKIKYIGLSEASPDTIRRAHGV-------HP-ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 65 (200)
Q Consensus 4 L~~~GkIr~iGvS~~~~~~~~~~~~~-------~~-~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~ 65 (200)
+-+.|-.-.+|.+..+++++++.+.. .+ |-++.+. +.-+...+.++++.|.++|+.++..+
T Consensus 39 Vs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~-~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 39 MGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLIH-SPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEecc-cCCCcccHHHHHHHHHHcCCCEEEec
Confidence 34688899999999999888765444 24 6555542 22233335678999999999887654
No 102
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=30.69 E-value=1.7e+02 Score=27.17 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCChHhHHHH
Q 029043 106 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDN 149 (200)
Q Consensus 106 ~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en 149 (200)
.+|.++|++.|. ++.++.-.|..... ...+..|+|+|+.+-+.
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~-~vgitagaStP~~~i~~ 270 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVK-IIGVTAGASTPDWIIEE 270 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEeccCCCHHHHHH
Confidence 588889988875 57888889987665 47888999999976554
No 103
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.04 E-value=2.6e+02 Score=21.86 Aligned_cols=51 Identities=18% Similarity=0.032 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCCeEeecCCCChHhHHHHHhhcC-----CC---C-CHHHHHHHHhhCCCCC
Q 029043 121 QLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR-----IK---L-TKEDLKEISDAVPIEE 173 (200)
Q Consensus 121 q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~-----~~---L-t~~~~~~l~~~~~~~~ 173 (200)
.-.++++..++ ...+||+.|+.++....++=- +| + -..-++.|...++..+
T Consensus 87 ~~vi~~a~~~~--i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~ 146 (201)
T PRK06015 87 QELLAAANDSD--VPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTF 146 (201)
T ss_pred HHHHHHHHHcC--CCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCc
Confidence 44677777777 788889999998888876531 11 2 1455666666665443
No 104
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=29.79 E-value=2.8e+02 Score=21.88 Aligned_cols=58 Identities=7% Similarity=0.061 Sum_probs=32.5
Q ss_pred cEEEecCCCHHHHHHHhcCCCceEEcccCCCC-CccchhhHHHHHHHhCCeE-eeccccc
Q 029043 11 KYIGLSEASPDTIRRAHGVHPITAVQMEWSLW-TRDIEEEIIPLCRELGIGI-VPYSPLG 68 (200)
Q Consensus 11 r~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll-~~~~~~~~l~~~~~~gi~v-i~~~pla 68 (200)
-++.+..-+......+++...++++-.++... .......++..|.++|+.+ +.++++-
T Consensus 83 d~v~v~~~~~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~ 142 (237)
T PRK00912 83 DVLAVHGGDEKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDIL 142 (237)
T ss_pred cEEEEeCCCHHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhh
Confidence 34555544434435666667777776665521 1122356677777888776 3444444
No 105
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=29.61 E-value=1.7e+02 Score=22.56 Aligned_cols=75 Identities=15% Similarity=0.029 Sum_probs=46.4
Q ss_pred hhHHHHHHHhCCeEee-cccccCcccCCCCCCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHH
Q 029043 48 EEIIPLCRELGIGIVP-YSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAW 126 (200)
Q Consensus 48 ~~~l~~~~~~gi~vi~-~~pla~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~ 126 (200)
.+--+..+++||-++. +..-++|+..+-..-.--..+. ..+......+.+..+-+.++++++++.+.|...
T Consensus 122 ~~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~~--------~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 122 PRHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEAR--------VLAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred HhHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHHH--------HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566677888999988 7776777654321100000000 011234446777778888999999999999877
Q ss_pred HHhC
Q 029043 127 VLGQ 130 (200)
Q Consensus 127 ~l~~ 130 (200)
++.+
T Consensus 194 a~~r 197 (200)
T cd01075 194 AEER 197 (200)
T ss_pred HHHH
Confidence 6643
No 106
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=29.26 E-value=61 Score=18.76 Aligned_cols=21 Identities=24% Similarity=0.059 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 029043 106 FRIENLAKKYKCTSAQLALAW 126 (200)
Q Consensus 106 ~~l~~ia~~~g~s~~q~al~~ 126 (200)
..++...++.|++..++|-.-
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 355566667777777777443
No 107
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=29.15 E-value=54 Score=26.47 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=56.1
Q ss_pred CHHHHHHHhcC--CCceEEcccC--CCCCc-cchhhHHHHHHHhCCeEeecccccCcccCCCCCCCCCCCCcccccCCCC
Q 029043 19 SPDTIRRAHGV--HPITAVQMEW--SLWTR-DIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRY 93 (200)
Q Consensus 19 ~~~~~~~~~~~--~~~~~~q~~y--nll~~-~~~~~~l~~~~~~gi~vi~~~pla~G~L~g~~~~~~~~~~~~~~~~~~~ 93 (200)
++..++.+++. .-+|.+-+.+ +.+.+ +..++.++.|+++||.+...+++..=.
T Consensus 10 ~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~---------------------- 67 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIA---------------------- 67 (237)
T ss_pred CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHH----------------------
Confidence 55666666665 3456666644 33333 445899999999999986654433211
Q ss_pred CCcchhhhHHHHHHHHHHHHHcCCCHHHH--------------HHHHHHhCCCCeEeecCCCC
Q 029043 94 KGENLDRNKNIYFRIENLAKKYKCTSAQL--------------ALAWVLGQGDDVVPIPGTTK 142 (200)
Q Consensus 94 ~~~~~~~~~~~~~~l~~ia~~~g~s~~q~--------------al~~~l~~~~v~~~i~G~~~ 142 (200)
-.+..++.+-+.|+++|.+..++ .++.+.+++-..-+-+|.+.
T Consensus 68 ------~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~ 124 (237)
T TIGR03849 68 ------HSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKS 124 (237)
T ss_pred ------HHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccC
Confidence 12234456667777776643222 35556666655555556654
No 108
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=29.13 E-value=3e+02 Score=22.09 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=45.8
Q ss_pred cCCccEEEecCCCHHHHHHHhcCCCceEEcccCCC-CCccchhhHHHHHHHhCCeE-eeccccc
Q 029043 7 EGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSL-WTRDIEEEIIPLCRELGIGI-VPYSPLG 68 (200)
Q Consensus 7 ~GkIr~iGvS~~~~~~~~~~~~~~~~~~~q~~ynl-l~~~~~~~~l~~~~~~gi~v-i~~~pla 68 (200)
++++..|-+..-+...++.++....+|++-.+|.= .+...+......|.++|+++ +.++++.
T Consensus 74 r~~~dlI~V~~~~lkv~R~Av~~~rVDil~~p~~~r~~~gldh~~a~laa~~~valeisl~~ll 137 (229)
T COG1603 74 RSKVDLIAVEPGSLKVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLRPLL 137 (229)
T ss_pred hcceeEEEEccCcHHHHHHHHhccCccEEEcccccCCCccccHHHHHHHHhcCceEEEehHHhh
Confidence 45566778888888889999999999999887743 23333457889999999988 4445444
No 109
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=28.35 E-value=1e+02 Score=24.31 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=16.5
Q ss_pred hhHHHHHHHhCCeEeeccccc
Q 029043 48 EEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 48 ~~~l~~~~~~gi~vi~~~pla 68 (200)
..+++.|+++|+.+.+|..-.
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~ 215 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTIND 215 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCC
Confidence 578888888899888886543
No 110
>PRK05939 hypothetical protein; Provisional
Probab=28.18 E-value=2.6e+02 Score=24.17 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=38.0
Q ss_pred CCHHHHHHHhcC-CCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcc
Q 029043 18 ASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
.+.+.+++++.. .+..++....|+.-.-.+ .++.+.|+++|+-++.=.+.+.|.
T Consensus 119 ~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~ 174 (397)
T PRK05939 119 TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW 174 (397)
T ss_pred CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence 457778877754 455566666776444333 788999999999998877776654
No 111
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.16 E-value=2.3e+02 Score=22.74 Aligned_cols=51 Identities=12% Similarity=0.013 Sum_probs=25.0
Q ss_pred CCHHHHHHHhcCCCceEEcccCCCCC--------ccchhhHHHHHHHh-CCeEeeccccc
Q 029043 18 ASPDTIRRAHGVHPITAVQMEWSLWT--------RDIEEEIIPLCREL-GIGIVPYSPLG 68 (200)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~q~~ynll~--------~~~~~~~l~~~~~~-gi~vi~~~pla 68 (200)
++.....+.+....++.+++.+.-.+ .....++.+.++++ ++.+....|..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYL 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCce
Confidence 44454445555555555555332111 11125566666666 55655555544
No 112
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=27.83 E-value=2.9e+02 Score=22.07 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.3
Q ss_pred hHHHHcCCccEEEecCCC
Q 029043 2 KKLVEEGKIKYIGLSEAS 19 (200)
Q Consensus 2 ~~L~~~GkIr~iGvS~~~ 19 (200)
.+|.++|||+++=+|+.+
T Consensus 86 ~~ly~~gKV~~LLlSGDN 103 (235)
T COG2949 86 IALYKAGKVNYLLLSGDN 103 (235)
T ss_pred HHHHhcCCeeEEEEecCC
Confidence 368899999999999854
No 113
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.51 E-value=1.1e+02 Score=21.15 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHHcCC-ccEEEecCCCHHHHHHHhcCCCceEEcccCCCCCccc-hhhHHHHHHHhC
Q 029043 4 LVEEGK-IKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDI-EEEIIPLCRELG 58 (200)
Q Consensus 4 L~~~Gk-Ir~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~-~~~~l~~~~~~g 58 (200)
|+..|. +.++| .+.+++.+.+.+....++++.+..+.-.... -.++++.+++.+
T Consensus 23 l~~~G~~V~~lg-~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 23 LRDAGFEVIDLG-VDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 445554 34667 5577788888888888888888776433321 267777777774
No 114
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=27.02 E-value=1.9e+02 Score=27.51 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeeccccc
Q 029043 21 DTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 21 ~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla 68 (200)
+++-+......++.+...|-.+..+ .++.+.|++.||.+|+=+|--
T Consensus 96 deii~iak~~~vdavHPGYGFLSEr--sdFA~av~~AGi~fiGPspeV 141 (1176)
T KOG0369|consen 96 DEIISIAKKHNVDAVHPGYGFLSER--SDFAQAVQDAGIRFIGPSPEV 141 (1176)
T ss_pred HHHHHHHHHcCCCeecCCccccccc--hHHHHHHHhcCceEeCCCHHH
Confidence 4555566667888888888888776 578888899999888766644
No 115
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.96 E-value=72 Score=19.59 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=18.6
Q ss_pred cCCCCCcc-chhhHHHHHHHhCCeEeecc
Q 029043 38 EWSLWTRD-IEEEIIPLCRELGIGIVPYS 65 (200)
Q Consensus 38 ~ynll~~~-~~~~~l~~~~~~gi~vi~~~ 65 (200)
.|+.++.. .-.+++..|+++|+..++.+
T Consensus 7 ~~S~~~~~~~~~~~~~~a~~~g~~~v~iT 35 (67)
T smart00481 7 DYSLLDGALSPEELVKRAKELGLKAIAIT 35 (67)
T ss_pred CCccccccCCHHHHHHHHHHcCCCEEEEe
Confidence 45544433 22789999999998887643
No 116
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=26.72 E-value=1.7e+02 Score=25.37 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=43.9
Q ss_pred ecCCCHHHHHHHhcC-CCceEEcccCCCCCccch-hhHHHHHHHhC-CeEeecccccCcccCC
Q 029043 15 LSEASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELG-IGIVPYSPLGRGFFGG 74 (200)
Q Consensus 15 vS~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~~-~~~l~~~~~~g-i~vi~~~pla~G~L~g 74 (200)
+...+.+.++++++. .+..++..+=|++-+-.+ ..+.+.|+++| +.++.=++++.+++..
T Consensus 125 ~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~ 187 (386)
T PF01053_consen 125 VDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQN 187 (386)
T ss_dssp ESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-
T ss_pred eCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeec
Confidence 344567888888875 567788888888766544 78888999999 9999999998886553
No 117
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=26.56 E-value=1.2e+02 Score=25.68 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=44.3
Q ss_pred EEEecCCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcc
Q 029043 12 YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 12 ~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
+.|=|-++.+.+.++++..-.+++|+..+.+-.- .+++..|+++|+.++..+.+.+++
T Consensus 188 A~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 188 AADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCCcEEEeCCcccHH
Confidence 4455567778888888888888999887765442 567889999999998887777664
No 118
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=26.09 E-value=1.5e+02 Score=25.89 Aligned_cols=69 Identities=12% Similarity=0.015 Sum_probs=49.3
Q ss_pred hHHHHcCCccEEEecCCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCc
Q 029043 2 KKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 70 (200)
Q Consensus 2 ~~L~~~GkIr~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G 70 (200)
..|.++|.--..|+.+-.-...+.+....-..+.+-+|+++......+.....++.++.+++-.|++.+
T Consensus 284 ~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 284 SRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 467788888888888754333333333233346677999998886688899999999999887777754
No 119
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.74 E-value=2e+02 Score=25.28 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=37.4
Q ss_pred CHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCccc
Q 029043 19 SPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 72 (200)
Q Consensus 19 ~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~L 72 (200)
+++.+++++.. .+..++...-|+.-.-. -.++.+.|+++|+.++.=.+.+.|.+
T Consensus 138 d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~ 193 (433)
T PRK08134 138 DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYL 193 (433)
T ss_pred CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 67788887764 45555555555532222 37899999999999998888876643
No 120
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=24.96 E-value=77 Score=24.46 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=34.9
Q ss_pred EEecCCCHHHHHHHhcCCC-c-eEEcccCCCCCccchhhHHHHHHHhCCeEeeccccc
Q 029043 13 IGLSEASPDTIRRAHGVHP-I-TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 13 iGvS~~~~~~~~~~~~~~~-~-~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla 68 (200)
+|.|.|.+-.+..+....+ + +++-+.|+ .++++.|++.|..+..+.+-.
T Consensus 69 fGaS~H~Ar~lL~~~~~~p~iraa~NIrY~-------~~~v~~~~~~G~~v~~~dR~~ 119 (181)
T COG1992 69 FGASSHTARVLLTVMKHDPDIRAAINIRYS-------EEVVEALKDLGLAVSSFDRSK 119 (181)
T ss_pred CCchHHHHHHHHHHHhhCCCceEEeeeccc-------HHHHHHHHhcCceEEEeCccc
Confidence 4677777777777766633 3 44555665 789999999999998776643
No 121
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.82 E-value=2e+02 Score=18.90 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=36.3
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecc
Q 029043 1 MKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 65 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~ 65 (200)
+++|++.||+ .+| ..+..++++..+...+-+-=+.-. +....+..+|+.++|.++-+.
T Consensus 3 ~~~~~ragkl-~~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSI-VIG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCE-EEc-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 3567777864 222 466677777655444444333322 234789999999999997665
No 122
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=24.80 E-value=1.3e+02 Score=24.98 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=44.8
Q ss_pred EEEecCCCHHHHHHHhcCCCceEEcccCCCCCcc-chhhHHHHHHHhCCeEeecccccCcc
Q 029043 12 YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 12 ~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~-~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
..|=|-++.+.+..+++..-.+++|+.....-.- .-..+.+.|+.+|+.++..+.+..|+
T Consensus 210 a~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 210 ALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred EeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 4455667778888888887788888877654322 23789999999999999887777665
No 123
>PF13518 HTH_28: Helix-turn-helix domain
Probab=24.52 E-value=98 Score=17.61 Aligned_cols=21 Identities=10% Similarity=0.556 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 029043 107 RIENLAKKYKCTSAQLALAWVL 128 (200)
Q Consensus 107 ~l~~ia~~~g~s~~q~al~~~l 128 (200)
.+.++|..+|+|..++ .+|+.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~ 34 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIK 34 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHH
Confidence 4567788888877664 66654
No 124
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=24.33 E-value=2.9e+02 Score=23.37 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=40.0
Q ss_pred CCHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCccc
Q 029043 18 ASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 72 (200)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~L 72 (200)
.+.+.+++++.. .+..++....|+.-.-. ..++.+.|+++|+-++.=.+.+.|.+
T Consensus 113 ~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~ 169 (369)
T cd00614 113 DDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL 169 (369)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence 356778777754 55666667777754332 37889999999999998888877765
No 125
>PRK05968 hypothetical protein; Provisional
Probab=24.32 E-value=3e+02 Score=23.58 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=39.5
Q ss_pred CCHHHHHHHhcCCCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcc
Q 029043 18 ASPDTIRRAHGVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
.+++.+++++...+..+++.+-|..-...+ .++.+.|+++|+.++.=...+.+.
T Consensus 136 ~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 136 RDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 366778777755667777777776554433 778999999999998877776654
No 126
>PRK12397 propionate kinase; Reviewed
Probab=24.26 E-value=2.6e+02 Score=24.57 Aligned_cols=118 Identities=13% Similarity=0.151 Sum_probs=65.2
Q ss_pred HHHHcCCccEEEecCCCHHHHH----HHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeE---eecccccCcccCCC
Q 029043 3 KLVEEGKIKYIGLSEASPDTIR----RAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGI---VPYSPLGRGFFGGK 75 (200)
Q Consensus 3 ~L~~~GkIr~iGvS~~~~~~~~----~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~v---i~~~pla~G~L~g~ 75 (200)
++.++-.||.+|+=.-+-..+. +.+....-+...+-.++ ..+.-=-|.++|..+ ++++|+. |++.+.
T Consensus 166 ~~~~~~gIRryGFHGlS~~yva~~~a~~lg~~~~~~~lIv~HL-----G~GaSi~Ai~~GksvDtsmG~tPle-Gl~mgt 239 (404)
T PRK12397 166 RYYAELGIRRYGFHGTSHKYVSGVLAEKLGVPLSALRVICCHL-----GNGSSICAIKNGRSVNTSMGFTPQS-GVMMGT 239 (404)
T ss_pred HHHHhcCceEeeeeHHHHHHHHHHHHHHhCCChhHCCEEEEEe-----CCCcchheeeCCEEEEcCCCCCCCC-CCCCCC
Confidence 4566744699998876644432 23322111222222222 223333334556544 5557777 555544
Q ss_pred CCCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecC-CCChHhHHHHHh
Q 029043 76 AVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPG-TTKIKNLDDNID 151 (200)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G-~~~~~~l~enl~ 151 (200)
+.. ..++ ..+-.++++.|.++.+ ....+..+.+. .-+.| +++...+.+..+
T Consensus 240 RsG-~lDp----------------------~~l~~l~~~~~~s~~e-~~~~Lnk~SGL-lg~sG~s~D~R~l~~~~~ 291 (404)
T PRK12397 240 RSG-DIDP----------------------SILPWIAQREGKTPQQ-LNQLLNNESGL-LGVSGVSSDYRDVEQAAN 291 (404)
T ss_pred CCC-CCCh----------------------HHHHHHHHhcCCCHHH-HHHHHhccccc-eEecCCCCCHHHHHHHHH
Confidence 322 2222 3667788888999877 45666666664 44668 788888876654
No 127
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=24.12 E-value=1.5e+02 Score=26.02 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHhcC-CCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcccC
Q 029043 21 DTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFG 73 (200)
Q Consensus 21 ~~~~~~~~~-~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~L~ 73 (200)
..++++++. ++...+..+-|++-.-++ ..+.+.|+++|+.++.=.+++.+.+.
T Consensus 153 ~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~ 207 (409)
T KOG0053|consen 153 KKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQ 207 (409)
T ss_pred HHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccccc
Confidence 355556665 667778888999877665 88999999999999999999988544
No 128
>PRK07058 acetate kinase; Provisional
Probab=24.01 E-value=2.1e+02 Score=24.97 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=61.2
Q ss_pred HHHHcCCccEEEecCCCHHHHHH-HhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeE---eecccccCcccCCCCCC
Q 029043 3 KLVEEGKIKYIGLSEASPDTIRR-AHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGI---VPYSPLGRGFFGGKAVV 78 (200)
Q Consensus 3 ~L~~~GkIr~iGvS~~~~~~~~~-~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~v---i~~~pla~G~L~g~~~~ 78 (200)
++.++ .||.+|+=.-+-..+.+ +.+..+ .. -..|++--....+.-=-|.++|-.+ ++++||. |+--|. ..
T Consensus 168 ~~~~~-giRRYGfHGlS~~~va~~~a~~l~-~~--~~~~~Iv~HLG~G~Si~Ai~~GksvDtsmG~tpLe-GL~mgt-Rs 241 (396)
T PRK07058 168 ALHDE-GIKRYGFHGLSYKFVAGELRRRAP-EL--ARGKVVAAHLGSGASLCALDAGKSRDTSMGFSTLD-GIPMAT-RC 241 (396)
T ss_pred HHHHh-CCCccCCcHHHHHHHHHHHHHhcC-Cc--ccCCEEEEEeCCCceeeeeeCCEEEEcCCCCCCcC-CCcccC-CC
Confidence 46677 79999998766544332 222111 00 1223322222233222334555433 4556766 432222 22
Q ss_pred CCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecC-CCChHhHH
Q 029043 79 ESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPG-TTKIKNLD 147 (200)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~i~G-~~~~~~l~ 147 (200)
...+. ..+..++++.+.|+.+ ....+..+.+... +.| +++...+.
T Consensus 242 G~ldp----------------------~~l~~l~~~~~~s~~e-l~~~Ln~~SGLlg-~sG~s~D~R~l~ 287 (396)
T PRK07058 242 GALDP----------------------GVVLHLLKQEGMSLDE-VEDLLYHRSGLLG-VSGISGDTRDLL 287 (396)
T ss_pred CCCCh----------------------HHHHHHHHhcCCCHHH-HHHHHhcccCcEE-ecCCCCCHHHHh
Confidence 23333 3667788888999887 4566666666544 568 77888885
No 129
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.98 E-value=2.4e+02 Score=23.05 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=21.2
Q ss_pred ceEEcccCCCCCccchhhHHHHHHHhCCe
Q 029043 32 ITAVQMEWSLWTRDIEEEIIPLCRELGIG 60 (200)
Q Consensus 32 ~~~~q~~ynll~~~~~~~~l~~~~~~gi~ 60 (200)
+-+++.-||++.+--...++..|++.|+.
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGvd 121 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGVK 121 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCCe
Confidence 34688899998775446778888877763
No 130
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=23.81 E-value=1.4e+02 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=25.3
Q ss_pred HHcCCCH---HHHHHHHHHhCCCCeEeecCCCChH
Q 029043 113 KKYKCTS---AQLALAWVLGQGDDVVPIPGTTKIK 144 (200)
Q Consensus 113 ~~~g~s~---~q~al~~~l~~~~v~~~i~G~~~~~ 144 (200)
.+.|++. ..-++.|+++++.|..+|+|+....
T Consensus 216 ~~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~ 250 (356)
T PRK08334 216 HYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIV 250 (356)
T ss_pred HHCCCCEEEEehhHHHHHhhhcCCCEEEECccEEe
Confidence 4567763 5778889999989999999887654
No 131
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.78 E-value=1.8e+02 Score=25.11 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=43.2
Q ss_pred cEEEecCCCHHHHHHHhcCCCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeeccc
Q 029043 11 KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSP 66 (200)
Q Consensus 11 r~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~p 66 (200)
-..|-|.++.+.++++++..-.+++|+..+-.-.-. -.++.+.|+.+|+.++..+.
T Consensus 264 Ia~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 264 IVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred EEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 345566678899999998888899999877643321 27899999999999998654
No 132
>PRK06361 hypothetical protein; Provisional
Probab=23.57 E-value=3.4e+02 Score=20.79 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHH
Q 029043 104 IYFRIENLAKKYKCTSAQLAL 124 (200)
Q Consensus 104 ~~~~l~~ia~~~g~s~~q~al 124 (200)
..+.+..++.+.|++..++--
T Consensus 178 ~~~~~~~i~~~~gl~~~~v~~ 198 (212)
T PRK06361 178 TYEFARKVALGAGLTEKELEE 198 (212)
T ss_pred HHHHHHHHHcCCCCCHHHHHH
Confidence 346677777777877776543
No 133
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=23.34 E-value=1.2e+02 Score=25.09 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCHHHHHHHhcC--CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcc
Q 029043 18 ASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 18 ~~~~~~~~~~~~--~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
|+..++.++++. .+..++-+.||+-+. ++-++|++.|+.+++.-|+..-+
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s----~ie~~~~e~gi~il~~IPyd~~i 252 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS----EIEEYCEEEGIPILGEIPYDKDI 252 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch----HHHHHHHHcCCCeeEECCcchhH
Confidence 344445555554 677888889965332 68999999999999998988554
No 134
>PLN02509 cystathionine beta-lyase
Probab=23.31 E-value=3e+02 Score=24.51 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=41.4
Q ss_pred CCHHHHHHHhcC-CCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcccC
Q 029043 18 ASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFG 73 (200)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~L~ 73 (200)
.+.+.+++++.. .+..++..+.|+.-.-.+ ..+.+.|+++|+-++.=.+++.|.+.
T Consensus 205 ~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~ 262 (464)
T PLN02509 205 TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLS 262 (464)
T ss_pred CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccC
Confidence 456777777754 456667778888655433 78899999999999988888777643
No 135
>PRK08462 biotin carboxylase; Validated
Probab=23.19 E-value=1.4e+02 Score=26.10 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=7.9
Q ss_pred HHHHHHHHHcCCC
Q 029043 106 FRIENLAKKYKCT 118 (200)
Q Consensus 106 ~~l~~ia~~~g~s 118 (200)
..+++++++.|++
T Consensus 119 ~~~r~~l~~~gIp 131 (445)
T PRK08462 119 SKAKEVMKRAGVP 131 (445)
T ss_pred HHHHHHHHHCCCC
Confidence 3555666676665
No 136
>PF10120 Aldolase_2: Putative aldolase; InterPro: IPR019293 This family of proteins have no known function. In many cases they represent a domain C-terminal to a phosphomethylpyrimidine kinase domain or a HTH DNA-binding domain.; PDB: 2PHP_A 2PB9_A.
Probab=23.07 E-value=86 Score=23.88 Aligned_cols=49 Identities=27% Similarity=0.462 Sum_probs=34.0
Q ss_pred EEecCCCHHHHHHHhcCCC-c-eEEcccCCCCCccchhhHHHHHHHhCCeEeeccccc
Q 029043 13 IGLSEASPDTIRRAHGVHP-I-TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 68 (200)
Q Consensus 13 iGvS~~~~~~~~~~~~~~~-~-~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla 68 (200)
+|.|.|.+..+..+.+..+ + .++-+.|+ .++++.|++.|..+..+.+-.
T Consensus 62 fGaS~H~A~~lL~a~~~~p~iRsaiNiry~-------~~i~~~l~~~g~~v~~~dr~~ 112 (170)
T PF10120_consen 62 FGASSHVARILLTARKFDPEIRSAINIRYD-------EEIIEALEELGLKVSEFDRSE 112 (170)
T ss_dssp ETS-CHHHHHHHHHHCC-TT--EEEEEE---------HHHHHHHHCTTSEEEE--CCC
T ss_pred cCCcHHHHHHHHHHHHhCCCceEEEEEecC-------HHHHHHHHHCCCeEEEECCCC
Confidence 7899998888888888743 2 45555665 689999999999998877665
No 137
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.04 E-value=97 Score=24.66 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=34.1
Q ss_pred HcCCccEEEecC-CCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhC
Q 029043 6 EEGKIKYIGLSE-ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELG 58 (200)
Q Consensus 6 ~~GkIr~iGvS~-~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~g 58 (200)
.--+|-|+|.|+ .++.++-.++..+.+ .-++|++ ++-.++++.|+++.
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~i--YaVEfs~---R~~reLl~~a~~R~ 124 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRI--YAVEFSP---RPMRELLDVAEKRP 124 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcE--EEEEecc---hhHHHHHHHHHhCC
Confidence 445799999886 778999999885444 3444443 22478999999753
No 138
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=22.84 E-value=2.1e+02 Score=26.17 Aligned_cols=18 Identities=17% Similarity=-0.053 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHcCCCH
Q 029043 102 KNIYFRIENLAKKYKCTS 119 (200)
Q Consensus 102 ~~~~~~l~~ia~~~g~s~ 119 (200)
..++....++++.+|++.
T Consensus 474 ~r~~~la~aLae~lgvdI 491 (576)
T COG1151 474 YRIIVLALALAEVLGLDI 491 (576)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 344456678888888863
No 139
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=22.65 E-value=3.8e+02 Score=23.00 Aligned_cols=54 Identities=11% Similarity=-0.030 Sum_probs=37.5
Q ss_pred CCHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCcc
Q 029043 18 ASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGF 71 (200)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~ 71 (200)
.+.+.+++++.. .+..++..+.|+.-.-. ..++.+.|+++|+-++.=...+.+.
T Consensus 134 ~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~ 189 (390)
T PRK08133 134 TDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPA 189 (390)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 456777777654 45666666777654432 3789999999999998777665554
No 140
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.55 E-value=2.9e+02 Score=21.68 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=0.0
Q ss_pred ChHHHHcCCccEEEecC-CCHHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEee
Q 029043 1 MKKLVEEGKIKYIGLSE-ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 63 (200)
Q Consensus 1 l~~L~~~GkIr~iGvS~-~~~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~ 63 (200)
+++++++..=-.+|..+ .+.+.++.+++.+-==++-..+| .+++++|+++|+.++.
T Consensus 50 i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~-------~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 50 IRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLT-------PELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCC-------HHHHHHHHHcCCcEEC
No 141
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=22.48 E-value=3.7e+02 Score=23.16 Aligned_cols=64 Identities=8% Similarity=0.043 Sum_probs=42.8
Q ss_pred ccEEEecCCCHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCcccC
Q 029043 10 IKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFG 73 (200)
Q Consensus 10 Ir~iGvS~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G~L~ 73 (200)
++..-+...+.+.+++++.. .+..++..+-|+.-.-. ..++.+.|+++|+-++.=.+.+.|.+.
T Consensus 118 i~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 118 FKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ 183 (388)
T ss_pred eEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC
Confidence 34333444567778777653 55666666666643332 268899999999999988888877543
No 142
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=22.46 E-value=2.5e+02 Score=24.57 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=39.2
Q ss_pred CCCHHHHHHHhcC-CCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcccCC
Q 029043 17 EASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGG 74 (200)
Q Consensus 17 ~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~L~g 74 (200)
..+++.++++++. .+-..+..-=|+--.-.+ +.+-+.|+++|+.++.-++++.+.|..
T Consensus 134 ~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~r 193 (426)
T COG2873 134 PDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCR 193 (426)
T ss_pred CCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecc
Confidence 4567888888776 555555553333222222 678999999999999998888765543
No 143
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=22.13 E-value=4.4e+02 Score=21.49 Aligned_cols=21 Identities=19% Similarity=0.030 Sum_probs=16.4
Q ss_pred CCeEeecCCCChHhHHHHHhh
Q 029043 132 DDVVPIPGTTKIKNLDDNIDS 152 (200)
Q Consensus 132 ~v~~~i~G~~~~~~l~enl~a 152 (200)
+...+++|+++++++.+.-+.
T Consensus 187 g~~GvV~gAT~p~e~~~iR~~ 207 (261)
T TIGR02127 187 SSVGAVVGATSPGDLLRLRIE 207 (261)
T ss_pred CceEEEECCCCHHHHHHHHHh
Confidence 468999999998887776554
No 144
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=22.02 E-value=1.6e+02 Score=28.57 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccccCcccC
Q 029043 20 PDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFG 73 (200)
Q Consensus 20 ~~~~~~~~~~~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pla~G~L~ 73 (200)
.+++-.+......|.+...|-+|..+ .++...|.+.||.+|+=+|-..-.|.
T Consensus 69 IdeII~iAk~~gaDaIhPGYGfLSEn--~efA~~c~eaGI~FIGP~~e~ld~~G 120 (1149)
T COG1038 69 IDEIIRIAKRSGADAIHPGYGFLSEN--PEFARACAEAGITFIGPKPEVLDMLG 120 (1149)
T ss_pred HHHHHHHHHHcCCCeecCCcccccCC--HHHHHHHHHcCCEEeCCCHHHHHHhc
Confidence 45555556667889999999999987 57999999999999986655444433
No 145
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=21.71 E-value=1.7e+02 Score=23.16 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=28.0
Q ss_pred CceEEcc--cCCCCCccchhhHHHHHHHhCCeEeecc
Q 029043 31 PITAVQM--EWSLWTRDIEEEIIPLCRELGIGIVPYS 65 (200)
Q Consensus 31 ~~~~~q~--~ynll~~~~~~~~l~~~~~~gi~vi~~~ 65 (200)
...++-+ +||++|+....++.+..++.|+.++...
T Consensus 183 ~~~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~d 219 (221)
T PF09989_consen 183 KPAIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITED 219 (221)
T ss_pred CceEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCcc
Confidence 3444444 9999999988999999999999998643
No 146
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.56 E-value=4.1e+02 Score=23.25 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=37.4
Q ss_pred EecCCCHHHHHHHhcC-CCceEEcccCCCCCccc-hhhHHHHHHHhCCeEeecccccCc
Q 029043 14 GLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRG 70 (200)
Q Consensus 14 GvS~~~~~~~~~~~~~-~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi~vi~~~pla~G 70 (200)
-+...+++.+++++.. .+..++..+-|+.-.-. ..++.++|+++|+-++.=.+.+.+
T Consensus 133 ~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 133 FVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred EECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 3334567788887754 45555555556533332 268899999999988877776644
No 147
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=21.43 E-value=2.7e+02 Score=18.79 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=39.7
Q ss_pred HHHc-CCccEEEecCCCHHHHHHHhcC---------------CCceEEcccCCCCCccchhhHHHHHHHhCCeEeecccc
Q 029043 4 LVEE-GKIKYIGLSEASPDTIRRAHGV---------------HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 67 (200)
Q Consensus 4 L~~~-GkIr~iGvS~~~~~~~~~~~~~---------------~~~~~~q~~ynll~~~~~~~~l~~~~~~gi~vi~~~pl 67 (200)
+.+. ..+.-.|+.+-+.+..+.+.+. ..+|++-+.-.. ..-.+++..|-++|+.++.-.|+
T Consensus 19 ~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~---~~h~~~~~~~l~~g~~v~~EKP~ 95 (120)
T PF01408_consen 19 LLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP---SSHAEIAKKALEAGKHVLVEKPL 95 (120)
T ss_dssp HHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG---GGHHHHHHHHHHTTSEEEEESSS
T ss_pred HHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC---cchHHHHHHHHHcCCEEEEEcCC
Confidence 4444 5667778888777665554333 233333332111 11268899999999999999999
Q ss_pred cC
Q 029043 68 GR 69 (200)
Q Consensus 68 a~ 69 (200)
+.
T Consensus 96 ~~ 97 (120)
T PF01408_consen 96 AL 97 (120)
T ss_dssp SS
T ss_pred cC
Confidence 94
No 148
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=21.40 E-value=1.6e+02 Score=16.77 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHH
Q 029043 102 KNIYFRIENLAKKYKCTSAQL 122 (200)
Q Consensus 102 ~~~~~~l~~ia~~~g~s~~q~ 122 (200)
.+....|..++++.|++.+.+
T Consensus 11 ~el~~~L~~ls~~t~i~~S~L 31 (44)
T PF12651_consen 11 KELYEKLKELSEETGIPKSKL 31 (44)
T ss_pred HHHHHHHHHHHHHHCCCHHHH
Confidence 456689999999999987654
No 149
>PF14658 EF-hand_9: EF-hand domain
Probab=21.37 E-value=1.7e+02 Score=18.64 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCCChHhHHHHHhhcCC-CCCHHHHHHHHhhCCCC
Q 029043 139 GTTKIKNLDDNIDSLRI-KLTKEDLKEISDAVPIE 172 (200)
Q Consensus 139 G~~~~~~l~enl~a~~~-~Lt~~~~~~l~~~~~~~ 172 (200)
|.-...++...+++... ..++.+++.|.+.+++.
T Consensus 13 G~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~ 47 (66)
T PF14658_consen 13 GRVPVSDLITYLRAVTGRSPEESELQDLINELDPE 47 (66)
T ss_pred ceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCC
Confidence 45567899999999988 88999999999888754
No 150
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.21 E-value=1.1e+02 Score=17.71 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=17.0
Q ss_pred CCChHhHHHHHhhcCCCCCHHHH
Q 029043 140 TTKIKNLDDNIDSLRIKLTKEDL 162 (200)
Q Consensus 140 ~~~~~~l~enl~a~~~~Lt~~~~ 162 (200)
+.+++++....+..++.+|.+|+
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHh
Confidence 55777777777777778887765
No 151
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=21.01 E-value=1.5e+02 Score=22.86 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHcCC-ccEEEecCCCHHHHHHHhcCCCceEEcccCCCCCccc-hhhHHHHHHHhCC
Q 029043 4 LVEEGK-IKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDI-EEEIIPLCRELGI 59 (200)
Q Consensus 4 L~~~Gk-Ir~iGvS~~~~~~~~~~~~~~~~~~~q~~ynll~~~~-~~~~l~~~~~~gi 59 (200)
|+..|. +.++| .+.+.+.+.+++....++++-+..+.-.... -.++++.+++.+.
T Consensus 106 l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 106 LEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred HHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCC
Confidence 344443 35566 5556777777777777777777665533321 2667777777643
No 152
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.90 E-value=2e+02 Score=24.65 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHHhcC-CCceEEcccCCCCCccch-hhHHHHHHHhCCeEeecccccCcccC
Q 029043 21 DTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFG 73 (200)
Q Consensus 21 ~~~~~~~~~-~~~~~~q~~ynll~~~~~-~~~l~~~~~~gi~vi~~~pla~G~L~ 73 (200)
+.+++++.. .+..++..+.|+.-...+ .++.+.|+++|+-++.=.+.+.|.+.
T Consensus 126 e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~ 180 (377)
T TIGR01324 126 EDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF 180 (377)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 566666654 566777778887554433 68899999999999988888877653
No 153
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.49 E-value=1.1e+02 Score=28.41 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.7
Q ss_pred hhHHHHHHHhCCeEeecccccCcccC
Q 029043 48 EEIIPLCRELGIGIVPYSPLGRGFFG 73 (200)
Q Consensus 48 ~~~l~~~~~~gi~vi~~~pla~G~L~ 73 (200)
..+.+.|+++||.++---|||+.+..
T Consensus 591 lrIReiAeE~gVPIVENpPLARALY~ 616 (646)
T PRK12773 591 LLIIRIARENGVPTVEDRLQARGLYE 616 (646)
T ss_pred HHHHHHHHHcCCcEEECHHHHHHHHH
Confidence 67889999999999999999999854
No 154
>PF12728 HTH_17: Helix-turn-helix domain
Probab=20.46 E-value=1.2e+02 Score=17.40 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=13.7
Q ss_pred hHHHHcCCccEEEecC---CCHHHHHHHh
Q 029043 2 KKLVEEGKIKYIGLSE---ASPDTIRRAH 27 (200)
Q Consensus 2 ~~L~~~GkIr~iGvS~---~~~~~~~~~~ 27 (200)
..+.++|++..++++. ++.+.+.+.+
T Consensus 19 ~~~~~~g~i~~~~~g~~~~~~~~~l~~~~ 47 (51)
T PF12728_consen 19 YRWIRQGKIPPFKIGRKWRIPKSDLDRWL 47 (51)
T ss_pred HHHHHcCCCCeEEeCCEEEEeHHHHHHHH
Confidence 3456666666666544 3344444443
No 155
>PLN02591 tryptophan synthase
Probab=20.38 E-value=2.6e+02 Score=22.67 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=21.3
Q ss_pred ceEEcccCCCCCccchhhHHHHHHHhCC
Q 029043 32 ITAVQMEWSLWTRDIEEEIIPLCRELGI 59 (200)
Q Consensus 32 ~~~~q~~ynll~~~~~~~~l~~~~~~gi 59 (200)
+-+++.-||++.+.-...++..|++.|+
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHHHHcCC
Confidence 3468889999877545678888888886
No 156
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=20.16 E-value=3.4e+02 Score=21.42 Aligned_cols=52 Identities=23% Similarity=0.139 Sum_probs=31.1
Q ss_pred cEEEecCCCHHHHHHHhcCCCceEEcc-cCCCCCcc-----chhhHHHHHHHhC-CeEee
Q 029043 11 KYIGLSEASPDTIRRAHGVHPITAVQM-EWSLWTRD-----IEEEIIPLCRELG-IGIVP 63 (200)
Q Consensus 11 r~iGvS~~~~~~~~~~~~~~~~~~~q~-~ynll~~~-----~~~~~l~~~~~~g-i~vi~ 63 (200)
..||+|+|+.++++++.+.. +|.+=+ +.-.-..+ ...+.+.+.++.. +.+++
T Consensus 105 ~iIG~S~h~~eea~~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vA 163 (211)
T COG0352 105 LIIGLSTHDLEEALEAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVA 163 (211)
T ss_pred CEEEeecCCHHHHHHHHhcC-CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEE
Confidence 36999999999999988763 333322 22221111 2356666676666 66655
Done!