Query 029044
Match_columns 200
No_of_seqs 145 out of 1625
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 99.9 3.8E-20 8.1E-25 146.3 19.6 123 77-199 73-223 (233)
2 PRK11478 putative lyase; Provi 99.9 7.5E-20 1.6E-24 132.7 16.2 122 75-197 2-128 (129)
3 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 7.3E-20 1.6E-24 135.2 16.1 121 77-198 1-141 (142)
4 PLN03042 Lactoylglutathione ly 99.8 2.6E-19 5.6E-24 138.3 16.9 123 77-199 25-175 (185)
5 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2E-19 4.3E-24 129.2 14.4 117 79-196 1-125 (125)
6 TIGR03645 glyox_marine lactoyl 99.8 3.2E-19 7E-24 135.3 15.8 122 78-199 3-152 (162)
7 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 8.5E-19 1.8E-23 125.6 15.5 119 78-197 2-125 (125)
8 cd08342 HPPD_N_like N-terminal 99.8 4.9E-19 1.1E-23 130.3 14.3 118 80-199 1-124 (136)
9 PLN02300 lactoylglutathione ly 99.8 5.5E-19 1.2E-23 145.6 15.7 133 63-199 8-149 (286)
10 PRK04101 fosfomycin resistance 99.8 1.1E-18 2.5E-23 128.8 15.4 113 76-198 1-119 (139)
11 cd07233 Glyoxalase_I Glyoxalas 99.8 1.4E-18 3.1E-23 124.2 15.3 114 80-196 1-121 (121)
12 TIGR00068 glyox_I lactoylgluta 99.8 1.5E-18 3.2E-23 129.8 15.5 123 73-199 11-142 (150)
13 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 1.9E-18 4.2E-23 123.8 14.9 117 77-198 1-125 (125)
14 TIGR03081 metmalonyl_epim meth 99.8 5.7E-19 1.2E-23 127.5 12.0 119 79-197 1-128 (128)
15 cd07243 2_3_CTD_C C-terminal d 99.8 2.4E-18 5.2E-23 127.9 15.4 114 75-197 2-124 (143)
16 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 1.2E-18 2.5E-23 122.4 12.8 110 80-195 1-114 (114)
17 cd08364 FosX FosX, a fosfomyci 99.8 2.9E-18 6.2E-23 125.5 14.9 115 77-199 2-123 (131)
18 PRK10291 glyoxalase I; Provisi 99.8 2.6E-18 5.6E-23 125.1 13.2 111 84-198 1-120 (129)
19 cd08363 FosB FosB, a fosfomyci 99.8 3.7E-18 8E-23 124.9 13.0 110 80-199 1-116 (131)
20 cd08347 PcpA_C_like C-terminal 99.8 6.9E-18 1.5E-22 127.4 14.7 113 79-199 1-121 (157)
21 cd09014 BphC-JF8_C_like C-term 99.8 1.3E-17 2.8E-22 127.0 15.4 118 75-198 2-127 (166)
22 cd07255 Glo_EDI_BRP_like_12 Th 99.8 2.5E-17 5.4E-22 118.6 16.1 113 78-199 1-120 (125)
23 cd08355 Glo_EDI_BRP_like_14 Th 99.8 4.3E-17 9.3E-22 117.2 17.0 116 83-198 3-122 (122)
24 cd08361 PpCmtC_N N-terminal do 99.8 2E-17 4.3E-22 119.8 15.2 108 76-199 3-120 (124)
25 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 1.9E-17 4.1E-22 119.8 15.0 114 79-198 1-128 (128)
26 cd09013 BphC-JF8_N_like N-term 99.8 1.4E-17 2.9E-22 119.8 14.1 108 75-199 2-119 (121)
27 cd07265 2_3_CTD_N N-terminal d 99.8 2.3E-17 4.9E-22 118.7 14.7 108 77-198 2-119 (122)
28 cd07252 BphC1-RGP6_N_like N-te 99.8 2.3E-17 4.9E-22 118.7 14.6 106 79-198 2-117 (120)
29 cd09011 Glo_EDI_BRP_like_23 Th 99.8 2.3E-17 4.9E-22 118.5 14.0 113 79-198 2-119 (120)
30 cd07267 THT_Oxygenase_N N-term 99.8 3.7E-17 7.9E-22 116.4 14.7 106 77-197 1-109 (113)
31 cd07247 SgaA_N_like N-terminal 99.8 4.8E-17 1E-21 115.4 15.3 109 80-197 1-114 (114)
32 cd07263 Glo_EDI_BRP_like_16 Th 99.8 4.1E-17 8.9E-22 115.7 14.8 113 82-197 1-119 (119)
33 cd07244 FosA FosA, a Fosfomyci 99.8 2E-17 4.3E-22 119.1 13.2 107 79-198 1-110 (121)
34 cd08346 PcpA_N_like N-terminal 99.8 2.3E-17 4.9E-22 118.4 13.4 116 79-196 1-126 (126)
35 cd07257 THT_oxygenase_C The C- 99.8 1E-17 2.3E-22 125.8 11.9 113 79-197 1-124 (153)
36 PF00903 Glyoxalase: Glyoxalas 99.8 2.9E-18 6.4E-23 123.0 8.0 117 79-195 1-128 (128)
37 cd07249 MMCE Methylmalonyl-CoA 99.8 2.5E-17 5.3E-22 118.7 12.9 118 80-197 1-128 (128)
38 cd08358 Glo_EDI_BRP_like_21 Th 99.8 4.8E-17 1E-21 118.4 14.3 110 79-197 2-126 (127)
39 cd07240 ED_TypeI_classII_N N-t 99.8 5.2E-17 1.1E-21 115.4 14.3 106 78-198 1-114 (117)
40 cd08351 ChaP_like ChaP, an enz 99.8 6.1E-17 1.3E-21 116.9 14.5 106 78-199 3-122 (123)
41 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 1.5E-16 3.4E-21 113.7 16.4 113 83-197 5-121 (122)
42 cd08345 Fosfomycin_RP Fosfomyc 99.7 2.9E-17 6.4E-22 116.2 12.3 106 82-199 1-112 (113)
43 cd08362 BphC5-RrK37_N_like N-t 99.7 6.4E-17 1.4E-21 115.7 13.8 108 77-198 1-117 (120)
44 cd07264 Glo_EDI_BRP_like_15 Th 99.7 8.3E-17 1.8E-21 115.8 14.4 115 80-198 1-125 (125)
45 cd08348 BphC2-C3-RGP6_C_like T 99.7 1.5E-16 3.2E-21 116.2 15.9 113 79-199 1-121 (134)
46 cd08360 MhqB_like_C C-terminal 99.7 1E-16 2.2E-21 117.5 14.7 106 78-197 2-119 (134)
47 cd07256 HPCD_C_class_II C-term 99.7 1.1E-16 2.5E-21 121.1 15.4 112 78-198 2-123 (161)
48 cd07237 BphC1-RGP6_C_like C-te 99.7 1.1E-16 2.3E-21 120.4 14.4 111 78-198 8-131 (154)
49 cd08359 Glo_EDI_BRP_like_22 Th 99.7 1.8E-16 3.9E-21 113.3 14.6 109 82-197 4-119 (119)
50 cd07239 BphC5-RK37_C_like C-te 99.7 2.2E-16 4.8E-21 117.5 14.8 106 78-199 3-118 (144)
51 cd08343 ED_TypeI_classII_C C-t 99.7 4E-16 8.6E-21 113.9 15.1 108 81-199 1-118 (131)
52 cd08354 Glo_EDI_BRP_like_13 Th 99.7 3E-16 6.5E-21 112.3 14.0 114 80-198 1-122 (122)
53 cd07266 HPCD_N_class_II N-term 99.7 2.4E-16 5.1E-21 113.1 13.4 107 77-198 2-118 (121)
54 PRK06724 hypothetical protein; 99.7 3.2E-16 7E-21 114.4 13.4 107 76-198 4-123 (128)
55 cd08357 Glo_EDI_BRP_like_18 Th 99.7 4.2E-16 9E-21 112.0 13.5 111 82-198 2-125 (125)
56 cd09012 Glo_EDI_BRP_like_24 Th 99.7 4.1E-16 8.9E-21 112.5 13.1 113 80-197 1-123 (124)
57 cd08350 BLMT_like BLMT, a bleo 99.7 5.2E-16 1.1E-20 111.4 13.6 104 82-198 5-119 (120)
58 cd08349 BLMA_like Bleomycin bi 99.7 1E-15 2.3E-20 107.7 14.5 105 84-197 3-112 (112)
59 cd07254 Glo_EDI_BRP_like_20 Th 99.7 1.5E-15 3.2E-20 108.8 14.9 107 81-199 3-118 (120)
60 cd07235 MRD Mitomycin C resist 99.7 8.2E-16 1.8E-20 110.4 13.5 112 80-196 1-121 (122)
61 cd08356 Glo_EDI_BRP_like_17 Th 99.7 5.4E-16 1.2E-20 110.5 12.3 100 83-197 5-113 (113)
62 PF12681 Glyoxalase_2: Glyoxal 99.7 1.1E-15 2.3E-20 107.2 13.6 100 85-196 1-108 (108)
63 cd06587 Glo_EDI_BRP_like This 99.7 1.3E-15 2.9E-20 105.6 13.2 108 82-195 1-112 (112)
64 cd07261 Glo_EDI_BRP_like_11 Th 99.7 1.9E-15 4E-20 107.3 13.8 106 83-197 2-114 (114)
65 cd08344 MhqB_like_N N-terminal 99.7 1.8E-15 4E-20 107.3 13.6 103 79-198 2-109 (112)
66 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 2.4E-15 5.2E-20 106.4 14.0 101 83-198 4-111 (112)
67 cd07258 PpCmtC_C C-terminal do 99.7 1.6E-15 3.5E-20 112.5 12.9 104 81-197 1-113 (141)
68 cd07262 Glo_EDI_BRP_like_19 Th 99.7 2.2E-15 4.8E-20 108.3 13.2 107 80-196 1-122 (123)
69 TIGR03211 catechol_2_3 catecho 99.7 1.9E-15 4.2E-20 125.2 14.7 115 73-197 139-264 (303)
70 cd07251 Glo_EDI_BRP_like_10 Th 99.6 6.4E-15 1.4E-19 105.1 13.0 110 83-197 2-120 (121)
71 TIGR02295 HpaD 3,4-dihydroxyph 99.6 8E-15 1.7E-19 120.9 14.9 114 73-197 130-255 (294)
72 TIGR03213 23dbph12diox 2,3-dih 99.6 6.3E-15 1.4E-19 121.3 14.2 107 77-197 1-117 (286)
73 KOG2944 Glyoxalase [Carbohydra 99.6 7.2E-15 1.6E-19 107.7 11.7 120 78-198 41-168 (170)
74 TIGR03213 23dbph12diox 2,3-dih 99.6 2E-14 4.3E-19 118.3 15.3 112 77-197 140-262 (286)
75 TIGR03211 catechol_2_3 catecho 99.6 1.8E-14 3.9E-19 119.4 14.7 107 77-198 2-118 (303)
76 TIGR02295 HpaD 3,4-dihydroxyph 99.6 1.7E-14 3.8E-19 118.9 14.4 108 76-198 1-115 (294)
77 PLN02300 lactoylglutathione ly 99.6 1E-13 2.2E-18 114.3 14.3 119 77-199 152-279 (286)
78 PF13669 Glyoxalase_4: Glyoxal 99.5 4.7E-14 1E-18 99.9 9.6 94 81-176 1-96 (109)
79 COG2514 Predicted ring-cleavag 99.4 3.5E-12 7.6E-17 101.7 13.7 112 78-198 9-126 (265)
80 COG3324 Predicted enzyme relat 99.4 6.7E-12 1.4E-16 90.5 13.1 113 78-199 8-126 (127)
81 COG3607 Predicted lactoylgluta 99.3 2.1E-11 4.4E-16 86.3 10.6 118 79-200 3-129 (133)
82 cd07250 HPPD_C_like C-terminal 99.3 2.3E-11 5.1E-16 94.6 10.1 98 78-175 2-110 (191)
83 KOG2943 Predicted glyoxalase [ 99.3 1.1E-11 2.4E-16 96.9 7.9 120 74-197 12-142 (299)
84 COG3565 Predicted dioxygenase 99.3 1.1E-10 2.5E-15 81.3 11.1 110 80-197 5-128 (138)
85 cd06588 PhnB_like Escherichia 99.2 6.6E-10 1.4E-14 80.8 14.4 108 83-196 3-128 (128)
86 COG0346 GloA Lactoylglutathion 99.2 1.2E-10 2.7E-15 82.8 7.2 120 78-197 1-138 (138)
87 TIGR01263 4HPPD 4-hydroxypheny 99.1 4.9E-10 1.1E-14 95.0 9.8 104 72-175 151-265 (353)
88 COG2764 PhnB Uncharacterized p 99.1 1.1E-08 2.4E-13 74.9 14.7 113 84-199 5-132 (136)
89 TIGR01263 4HPPD 4-hydroxypheny 99.1 4.2E-09 9E-14 89.4 13.8 96 79-175 2-99 (353)
90 PRK01037 trmD tRNA (guanine-N( 98.9 1.3E-08 2.9E-13 84.6 10.0 104 78-198 246-354 (357)
91 PLN02875 4-hydroxyphenylpyruva 98.9 1.3E-08 2.8E-13 87.0 9.3 102 74-175 175-293 (398)
92 KOG2943 Predicted glyoxalase [ 98.8 3.6E-08 7.7E-13 77.4 8.3 111 79-197 149-269 (299)
93 COG2514 Predicted ring-cleavag 98.7 1.1E-07 2.3E-12 76.2 9.7 97 77-196 166-264 (265)
94 PF13468 Glyoxalase_3: Glyoxal 98.6 1E-07 2.2E-12 73.0 6.8 93 80-172 1-101 (175)
95 PF14506 CppA_N: CppA N-termin 98.4 3.7E-05 8E-10 54.5 14.2 110 81-199 2-115 (125)
96 PRK10148 hypothetical protein; 98.4 6.1E-05 1.3E-09 56.1 15.4 109 83-198 5-141 (147)
97 PF14696 Glyoxalase_5: Hydroxy 98.3 4.6E-06 1E-10 61.4 8.6 120 73-197 3-125 (139)
98 KOG0638 4-hydroxyphenylpyruvat 98.3 2.9E-06 6.2E-11 69.4 7.3 102 75-176 13-119 (381)
99 PLN02875 4-hydroxyphenylpyruva 98.3 3E-05 6.4E-10 66.6 13.4 118 80-197 1-150 (398)
100 COG3185 4-hydroxyphenylpyruvat 97.9 2E-05 4.3E-10 65.5 5.7 103 73-175 161-272 (363)
101 PF06983 3-dmu-9_3-mt: 3-demet 97.2 0.014 2.9E-07 41.7 11.6 97 87-196 10-116 (116)
102 KOG0638 4-hydroxyphenylpyruvat 97.2 0.0003 6.4E-09 57.8 3.1 104 72-175 171-289 (381)
103 COG3185 4-hydroxyphenylpyruvat 97.0 0.0096 2.1E-07 49.9 10.4 111 73-189 16-141 (363)
104 PF15067 FAM124: FAM124 family 97.0 0.0067 1.4E-07 48.0 8.9 98 81-194 130-234 (236)
105 PF13669 Glyoxalase_4: Glyoxal 96.0 0.036 7.7E-07 38.6 6.8 50 150-199 1-56 (109)
106 PF14507 CppA_C: CppA C-termin 94.5 0.11 2.5E-06 35.9 5.2 90 80-193 6-98 (101)
107 KOG2944 Glyoxalase [Carbohydra 94.4 0.19 4.1E-06 37.6 6.5 53 78-132 114-167 (170)
108 cd08353 Glo_EDI_BRP_like_7 Thi 92.0 0.72 1.6E-05 33.2 6.5 54 78-132 86-140 (142)
109 cd08342 HPPD_N_like N-terminal 90.9 1.9 4.1E-05 30.9 7.7 59 78-137 68-127 (136)
110 PF13670 PepSY_2: Peptidase pr 90.4 1.2 2.6E-05 29.5 5.8 39 158-196 30-71 (83)
111 cd07249 MMCE Methylmalonyl-CoA 90.2 1.7 3.6E-05 30.2 6.8 31 78-109 71-101 (128)
112 TIGR03645 glyox_marine lactoyl 89.9 2.3 5E-05 31.7 7.6 52 148-199 4-78 (162)
113 cd08347 PcpA_C_like C-terminal 89.7 1.9 4.2E-05 32.1 7.1 50 148-198 1-53 (157)
114 PLN02367 lactoylglutathione ly 89.6 1.7 3.7E-05 34.8 7.0 57 78-136 168-225 (233)
115 cd07242 Glo_EDI_BRP_like_6 Thi 89.3 2 4.4E-05 30.0 6.7 50 148-198 1-54 (128)
116 PRK11478 putative lyase; Provi 88.2 3.8 8.2E-05 28.6 7.4 54 78-132 74-128 (129)
117 cd08352 Glo_EDI_BRP_like_1 Thi 87.8 3.9 8.4E-05 28.0 7.2 50 148-197 3-57 (125)
118 PF06185 YecM: YecM protein; 86.1 11 0.00023 29.2 9.1 77 78-157 33-114 (185)
119 PRK10291 glyoxalase I; Provisi 86.0 6.6 0.00014 27.6 7.7 57 78-135 64-122 (129)
120 cd06587 Glo_EDI_BRP_like This 85.5 3.9 8.5E-05 26.8 6.1 48 151-199 1-51 (112)
121 cd07233 Glyoxalase_I Glyoxalas 85.4 4.9 0.00011 27.5 6.7 50 149-198 1-58 (121)
122 PLN03042 Lactoylglutathione ly 85.3 4.5 9.7E-05 31.2 6.9 57 78-136 120-177 (185)
123 cd07245 Glo_EDI_BRP_like_9 Thi 84.1 4.2 9.2E-05 27.0 5.8 50 149-198 1-52 (114)
124 cd08346 PcpA_N_like N-terminal 83.8 6.8 0.00015 26.8 6.9 50 149-198 2-60 (126)
125 cd07241 Glo_EDI_BRP_like_3 Thi 83.8 8.6 0.00019 26.3 7.4 49 149-197 2-55 (125)
126 cd07235 MRD Mitomycin C resist 83.7 4.7 0.0001 27.8 6.0 46 150-195 2-47 (122)
127 cd08348 BphC2-C3-RGP6_C_like T 83.6 9.3 0.0002 26.8 7.6 50 149-198 2-54 (134)
128 cd07263 Glo_EDI_BRP_like_16 Th 83.1 6.2 0.00013 26.6 6.3 47 151-197 1-53 (119)
129 TIGR03081 metmalonyl_epim meth 82.7 5.8 0.00012 27.4 6.2 30 78-108 71-100 (128)
130 cd07268 Glo_EDI_BRP_like_4 Thi 80.4 21 0.00047 26.5 10.1 74 80-157 2-81 (149)
131 cd07255 Glo_EDI_BRP_like_12 Th 79.0 15 0.00033 25.2 7.3 48 148-197 2-51 (125)
132 PF12681 Glyoxalase_2: Glyoxal 77.7 11 0.00024 25.1 6.1 31 77-108 54-84 (108)
133 cd07253 Glo_EDI_BRP_like_2 Thi 77.3 11 0.00025 25.5 6.2 30 148-177 3-33 (125)
134 PRK11700 hypothetical protein; 76.9 32 0.0007 26.6 8.9 76 78-157 38-119 (187)
135 cd07252 BphC1-RGP6_N_like N-te 76.9 16 0.00035 25.2 6.9 48 148-196 2-51 (120)
136 PF00903 Glyoxalase: Glyoxalas 76.4 15 0.00032 25.0 6.6 49 148-197 1-56 (128)
137 TIGR00068 glyox_I lactoylgluta 75.5 14 0.0003 26.8 6.5 56 78-134 85-142 (150)
138 cd08344 MhqB_like_N N-terminal 72.5 23 0.00051 24.0 6.7 29 148-176 2-30 (112)
139 cd07262 Glo_EDI_BRP_like_19 Th 72.4 19 0.00041 24.7 6.3 47 150-197 2-53 (123)
140 cd08359 Glo_EDI_BRP_like_22 Th 71.7 23 0.00051 24.0 6.6 25 82-107 69-93 (119)
141 cd08360 MhqB_like_C C-terminal 69.4 19 0.0004 25.5 5.8 55 78-132 61-119 (134)
142 cd07240 ED_TypeI_classII_N N-t 68.2 32 0.00069 23.1 6.7 38 149-188 3-41 (117)
143 cd09012 Glo_EDI_BRP_like_24 Th 65.7 35 0.00076 23.5 6.5 26 150-175 2-27 (124)
144 cd07238 Glo_EDI_BRP_like_5 Thi 65.2 39 0.00084 22.7 7.4 28 80-108 58-85 (112)
145 cd04882 ACT_Bt0572_2 C-termina 64.3 19 0.00041 21.7 4.4 25 149-173 40-64 (65)
146 cd07247 SgaA_N_like N-terminal 63.7 42 0.00091 22.5 7.3 30 79-109 61-90 (114)
147 cd07267 THT_Oxygenase_N N-term 62.7 45 0.00098 22.6 7.0 53 78-132 56-109 (113)
148 cd07265 2_3_CTD_N N-terminal d 62.5 47 0.001 22.7 6.8 30 148-177 4-34 (122)
149 cd07237 BphC1-RGP6_C_like C-te 61.6 58 0.0013 23.7 7.3 51 147-197 8-67 (154)
150 COG3865 Uncharacterized protei 61.5 65 0.0014 23.9 12.0 101 85-196 11-122 (151)
151 cd08363 FosB FosB, a fosfomyci 61.1 45 0.00097 23.5 6.4 28 149-176 1-29 (131)
152 cd07257 THT_oxygenase_C The C- 60.8 51 0.0011 24.0 6.8 30 78-107 66-97 (153)
153 cd08351 ChaP_like ChaP, an enz 60.3 53 0.0011 22.6 6.7 48 148-197 4-52 (123)
154 PF13468 Glyoxalase_3: Glyoxal 59.2 12 0.00025 28.2 3.2 28 74-101 148-175 (175)
155 PRK04101 fosfomycin resistance 58.7 53 0.0012 23.3 6.6 29 78-107 62-92 (139)
156 cd07239 BphC5-RK37_C_like C-te 57.2 58 0.0013 23.5 6.6 27 148-174 4-31 (144)
157 cd07246 Glo_EDI_BRP_like_8 Thi 56.8 58 0.0013 21.9 7.2 52 79-131 68-120 (122)
158 cd08361 PpCmtC_N N-terminal do 56.5 64 0.0014 22.3 6.6 47 148-196 6-54 (124)
159 cd07251 Glo_EDI_BRP_like_10 Th 55.6 49 0.0011 22.2 5.8 44 152-197 2-46 (121)
160 cd07258 PpCmtC_C C-terminal do 54.8 75 0.0016 22.9 6.8 56 77-132 54-113 (141)
161 cd04883 ACT_AcuB C-terminal AC 54.7 40 0.00087 20.8 4.8 27 150-176 43-71 (72)
162 cd07250 HPPD_C_like C-terminal 54.3 20 0.00043 27.5 3.8 87 78-199 82-172 (191)
163 cd09013 BphC-JF8_N_like N-term 54.2 63 0.0014 22.0 6.2 29 78-106 61-91 (121)
164 cd08364 FosX FosX, a fosfomyci 53.5 76 0.0016 22.2 6.6 28 79-107 66-95 (131)
165 cd08362 BphC5-RrK37_N_like N-t 53.1 68 0.0015 21.6 6.2 29 148-176 3-32 (120)
166 cd07264 Glo_EDI_BRP_like_15 Th 52.5 71 0.0015 21.6 6.9 27 81-108 73-99 (125)
167 cd08345 Fosfomycin_RP Fosfomyc 51.9 55 0.0012 21.8 5.5 53 78-131 54-109 (113)
168 cd08358 Glo_EDI_BRP_like_21 Th 51.3 88 0.0019 22.4 7.9 27 149-175 3-30 (127)
169 cd07266 HPCD_N_class_II N-term 50.1 78 0.0017 21.4 6.6 30 148-177 4-34 (121)
170 cd07243 2_3_CTD_C C-terminal d 49.9 86 0.0019 22.5 6.5 55 78-132 66-124 (143)
171 PRK06724 hypothetical protein; 49.7 91 0.002 22.1 7.1 56 78-133 62-123 (128)
172 cd04895 ACT_ACR_1 ACT domain-c 46.1 42 0.00091 21.6 3.7 35 159-193 15-55 (72)
173 cd08343 ED_TypeI_classII_C C-t 45.8 96 0.0021 21.6 6.1 48 150-197 1-53 (131)
174 cd08349 BLMA_like Bleomycin bi 45.4 87 0.0019 20.6 6.4 26 78-104 57-82 (112)
175 PF14133 DUF4300: Domain of un 41.7 46 0.00099 27.1 4.1 37 159-195 150-186 (250)
176 cd09011 Glo_EDI_BRP_like_23 Th 41.2 1.1E+02 0.0024 20.7 6.8 52 79-131 64-117 (120)
177 cd04906 ACT_ThrD-I_1 First of 38.5 70 0.0015 20.9 4.1 27 150-176 42-72 (85)
178 PF06923 GutM: Glucitol operon 38.2 48 0.001 23.2 3.3 43 156-199 23-71 (109)
179 cd07244 FosA FosA, a Fosfomyci 38.1 1.3E+02 0.0028 20.5 6.6 29 148-176 1-30 (121)
180 cd09014 BphC-JF8_C_like C-term 37.4 1.2E+02 0.0026 22.4 5.7 56 78-133 68-127 (166)
181 PF07063 DUF1338: Domain of un 37.3 32 0.0007 28.7 2.7 44 81-125 36-84 (302)
182 PF14907 NTP_transf_5: Unchara 36.5 1.3E+02 0.0029 23.5 6.2 45 152-197 97-143 (249)
183 KOG4657 Uncharacterized conser 35.9 94 0.002 24.9 4.9 20 88-107 145-164 (246)
184 cd03012 TlpA_like_DipZ_like Tl 34.9 1.5E+02 0.0034 20.5 6.0 41 158-198 72-124 (126)
185 PF09142 TruB_C: tRNA Pseudour 33.1 89 0.0019 19.0 3.6 41 158-199 5-45 (56)
186 cd04908 ACT_Bt0572_1 N-termina 32.6 1E+02 0.0022 18.8 4.0 23 152-174 43-65 (66)
187 cd08354 Glo_EDI_BRP_like_13 Th 30.8 1.7E+02 0.0036 19.6 7.5 47 150-197 2-49 (122)
188 cd07256 HPCD_C_class_II C-term 30.1 1E+02 0.0022 22.6 4.3 27 148-174 3-30 (161)
189 PHA02754 hypothetical protein; 29.8 1.4E+02 0.0031 18.5 4.4 39 160-198 21-62 (67)
190 PF07494 Reg_prop: Two compone 29.4 66 0.0014 15.7 2.1 13 181-193 7-19 (24)
191 PF13176 TPR_7: Tetratricopept 28.8 36 0.00078 18.2 1.2 18 86-103 11-28 (36)
192 cd04885 ACT_ThrD-I Tandem C-te 28.8 85 0.0018 19.4 3.1 25 149-173 39-66 (68)
193 COG3603 Uncharacterized conser 28.7 62 0.0014 23.2 2.6 25 150-174 103-127 (128)
194 PF02208 Sorb: Sorbin homologo 28.0 12 0.00027 21.8 -0.8 25 77-101 9-33 (47)
195 COG2344 AT-rich DNA-binding pr 27.8 1.2E+02 0.0027 23.7 4.2 37 157-196 157-193 (211)
196 cd07261 Glo_EDI_BRP_like_11 Th 27.3 1.9E+02 0.0041 19.1 6.4 30 78-107 58-89 (114)
197 PRK09437 bcp thioredoxin-depen 26.5 2.5E+02 0.0053 20.1 6.0 17 181-197 121-137 (154)
198 PF03975 CheD: CheD chemotacti 25.2 1.6E+02 0.0034 20.6 4.2 37 157-193 64-103 (114)
199 COG1225 Bcp Peroxiredoxin [Pos 25.2 3E+02 0.0065 20.7 5.9 49 148-196 64-136 (157)
200 PRK10234 DNA-binding transcrip 24.4 1.4E+02 0.003 21.4 3.7 44 155-199 23-72 (118)
201 COG3102 Uncharacterized protei 24.3 3.3E+02 0.0072 20.9 7.8 86 76-165 36-128 (185)
202 PF05593 RHS_repeat: RHS Repea 24.0 1.3E+02 0.0029 16.3 3.9 24 176-199 12-35 (38)
203 cd04886 ACT_ThrD-II-like C-ter 23.5 1.7E+02 0.0037 17.3 3.9 25 150-174 45-72 (73)
204 TIGR01643 YD_repeat_2x YD repe 23.4 1.4E+02 0.003 16.2 4.0 23 177-199 13-35 (42)
205 PF10706 Aminoglyc_resit: Amin 23.1 2.2E+02 0.0047 21.8 4.8 25 152-176 47-71 (174)
206 PF08445 FR47: FR47-like prote 23.0 1.6E+02 0.0035 19.2 3.8 24 84-108 59-82 (86)
207 COG4747 ACT domain-containing 22.9 93 0.002 22.4 2.6 86 80-175 42-135 (142)
208 COG3254 Uncharacterized conser 22.6 2.5E+02 0.0055 19.6 4.6 32 161-199 28-59 (105)
209 PF00583 Acetyltransf_1: Acety 22.6 98 0.0021 19.1 2.6 25 79-104 58-83 (83)
210 cd08355 Glo_EDI_BRP_like_14 Th 22.0 2.6E+02 0.0056 18.8 6.7 29 79-108 68-96 (122)
211 PF13420 Acetyltransf_4: Acety 21.8 2.9E+02 0.0064 19.4 5.9 31 79-110 110-141 (155)
212 cd04909 ACT_PDH-BS C-terminal 21.6 98 0.0021 18.8 2.4 16 158-173 54-69 (69)
213 PF12142 PPO1_DWL: Polyphenol 21.5 1.1E+02 0.0025 18.6 2.5 16 181-196 10-25 (54)
214 PF00379 Chitin_bind_4: Insect 21.0 1.9E+02 0.0041 16.9 3.5 16 182-197 30-45 (52)
215 cd04897 ACT_ACR_3 ACT domain-c 20.8 2.5E+02 0.0054 18.2 4.9 35 160-194 16-56 (75)
216 PRK13498 chemoreceptor glutami 20.8 2E+02 0.0043 21.8 4.3 38 155-192 113-153 (167)
217 COG1724 Predicted RNA binding 20.4 2.4E+02 0.0053 17.9 5.1 36 158-195 8-43 (66)
No 1
>PLN02367 lactoylglutathione lyase
Probab=99.87 E-value=3.8e-20 Score=146.29 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=96.3
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-------------------CeEEEEEecCCCC
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-------------------AEMIHLMELPNPD 137 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-------------------~~~~~l~~~~~~~ 137 (200)
-..++|++|+|+|++++++||+++|||++..+...++.++..+||..+ +..++|....+.+
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 347999999999999999999999999999888777777788888532 2368887655433
Q ss_pred C--CCCCCC----CCCceeEEEEEECCHHHHHHHHHHCCCeEEecCC---CceEEEEECCCCCeEEEEEeC
Q 029044 138 P--LSGRPE----HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 138 ~--~~~~~~----~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdGn~iEl~e~~ 199 (200)
. ...... ...+..||||.|+|+++++++|+++|+++...+. +.+.+||+|||||+|||+|..
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 1 111111 1247899999999999999999999999976432 245789999999999999864
No 2
>PRK11478 putative lyase; Provisional
Probab=99.85 E-value=7.5e-20 Score=132.69 Aligned_cols=122 Identities=23% Similarity=0.358 Sum_probs=87.9
Q ss_pred ceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEEecCCCCCCCCCCCCCCceeEEE
Q 029044 75 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 153 (200)
Q Consensus 75 ~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 153 (200)
+.+.+++||+|.|+|++++++||+++|||++......+........+.. ++..++++..+.+...... ....+..|++
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~~~~g~~hi~ 80 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSR-PEACGLRHLA 80 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCC-CCCCceeEEE
Confidence 4577899999999999999999999999998753221111111112333 4457777765433221111 1234578999
Q ss_pred EEECCHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEE
Q 029044 154 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 154 f~v~dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e 197 (200)
|.|+|+++++++|+++|+++... ..|.+.+||+|||||.|||+|
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999998643 246788999999999999987
No 3
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.85 E-value=7.3e-20 Score=135.16 Aligned_cols=121 Identities=21% Similarity=0.338 Sum_probs=90.0
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC-----------CCceEEEEEe--CCeEEEEEecCCCCCCC---
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWV--GAEMIHLMELPNPDPLS--- 140 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~--g~~~~~l~~~~~~~~~~--- 140 (200)
|.+++||+|.|+|++++++||++ |||++..+..... ......++.. ++..++|+....+....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999999 9999875543211 1123345543 44588888754332211
Q ss_pred CCCCCCCceeEEEEEECCHHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEEe
Q 029044 141 GRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 141 ~~~~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
.....+.+..|+||.|+|+++++++|+++|+++...+ ++.+.+||+||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 1122345678999999999999999999999986532 467889999999999999984
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=2.6e-19 Score=138.28 Aligned_cols=123 Identities=17% Similarity=0.212 Sum_probs=92.6
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-------------------CCeEEEEEecCCCC
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPNPD 137 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-------------------g~~~~~l~~~~~~~ 137 (200)
-.+++|++|+|.|+++|++||+++|||++..+...+...+..+++.. ++..++|+...+..
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 45799999999999999999999999999887655555556666643 23478887644322
Q ss_pred C-C-CC----CCCCCCceeEEEEEECCHHHHHHHHHHCCCeEEecCC---CceEEEEECCCCCeEEEEEeC
Q 029044 138 P-L-SG----RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 138 ~-~-~~----~~~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdGn~iEl~e~~ 199 (200)
. + .. ....+.++.|++|.|+|+++++++|+++|+++...+. +.+.+||+|||||+|||++..
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 1 0 00 1112246889999999999999999999999875432 345688899999999999864
No 5
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=2e-19 Score=129.17 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=85.9
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-CeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 157 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~ 157 (200)
+++||.|.|+|++++++||+++|||+..........++...|+..+ +..++++..+...... ......+..|+||.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVG 79 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECC
Confidence 4789999999999999999999999986543322333455677764 4578887654332211 1222346789999996
Q ss_pred ---CHHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEE
Q 029044 158 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 158 ---dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~ 196 (200)
|+++++++|+++|+++...+ .|.+.++|+|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 58999999999999986532 3456688999999999983
No 6
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.83 E-value=3.2e-19 Score=135.29 Aligned_cols=122 Identities=22% Similarity=0.273 Sum_probs=90.1
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeec----CC--------------CCCCceEEEEEeCC-eEEEEEecCCCCC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEAR----PH--------------DKLPYRGAWLWVGA-EMIHLMELPNPDP 138 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~g~-~~~~l~~~~~~~~ 138 (200)
++++||+|.|+|+++|++||+++|||++..+. .. .......+++..++ ..++|+...+...
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999886321 10 01113456676654 4799998765433
Q ss_pred CCCC-CCCCCceeEEEEEECCHHHHHHHHHHCCCeEEecC-----C---CceEEEEECCCCCeEEEEEeC
Q 029044 139 LSGR-PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----S---GRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 139 ~~~~-~~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~~~-----~---g~~~~~~~DPdGn~iEl~e~~ 199 (200)
+... ...+.+..|+||.|+|+++++++++++|+++.... . +.+.+||+|||||.|||++.+
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 2222 12345789999999999999999999998763321 1 247899999999999999864
No 7
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.82 E-value=8.5e-19 Score=125.61 Aligned_cols=119 Identities=27% Similarity=0.436 Sum_probs=86.8
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
.+++||+|.|.|++++++||+++|||++..............++.. ++..++++...........+ ...+..|++|.|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~g~~h~~~~v 80 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYP-EACGLRHLAFSV 80 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCC-cCCCceEEEEEe
Confidence 5799999999999999999999999999765322221112223333 45577777654432211112 234678999999
Q ss_pred CCHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEE
Q 029044 157 RDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 157 ~dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e 197 (200)
+|+++++++++++|+++... ..+.+.+|++||+||+|||.|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 81 EDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 99999999999999988653 235678999999999999975
No 8
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.82 E-value=4.9e-19 Score=130.31 Aligned_cols=118 Identities=12% Similarity=0.039 Sum_probs=88.5
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCC--CCCCCCceeEEEEEEC
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIR 157 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~f~v~ 157 (200)
++|+.|.|+|++++++||+++|||++......+ .....++..++..+.+........... ....+.+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 589999999999999999999999998765432 123455555666677665333221101 1224456789999999
Q ss_pred CHHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEEeC
Q 029044 158 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|+++++++++++|+++...+ .+.+.++++||||++|||+|..
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~ 124 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRK 124 (136)
T ss_pred CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecC
Confidence 99999999999999996432 4568899999999999999854
No 9
>PLN02300 lactoylglutathione lyase
Probab=99.82 E-value=5.5e-19 Score=145.57 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=99.3
Q ss_pred eecccCCCCCCCceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe----EEEEEecCCCCC
Q 029044 63 KKEPIRDSDKIDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDP 138 (200)
Q Consensus 63 ~~e~~~~~~~~~~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~~~l~~~~~~~~ 138 (200)
+.|.....+++.+.|.+++||.|.|+|++++++||+++|||++..+...+...+..+|+..++. .+.+......
T Consensus 8 ~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-- 85 (286)
T PLN02300 8 AAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV-- 85 (286)
T ss_pred ChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC--
Confidence 4455666788889999999999999999999999999999999875543333445677766532 2333321111
Q ss_pred CCCCCCCCCceeEEEEEECCHHHHHHHHHHCCCeEEecC----C-CceEEEEECCCCCeEEEEEeC
Q 029044 139 LSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK----S-GRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 139 ~~~~~~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~~~----~-g~~~~~~~DPdGn~iEl~e~~ 199 (200)
.....+.+..|++|.|+|+++++++++++|+++...+ . +.+.+||+|||||.|||++..
T Consensus 86 --~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 86 --DKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred --CccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 1122345678999999999999999999999886542 2 246789999999999999864
No 10
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.81 E-value=1.1e-18 Score=128.81 Aligned_cols=113 Identities=23% Similarity=0.361 Sum_probs=88.2
Q ss_pred eeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 76 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 76 ~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
+|.+++||.|.|+|++++++||+++|||++..+.+ ..+++..++..+.+...+... ......+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g~~l~l~~~~~~~----~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNGLWIALNEEKDIP----RNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCCeEEEeeccCCCC----CccCCCCeeEEEEE
Confidence 46789999999999999999999999999976432 346777777777665432211 11123456899999
Q ss_pred EC--CHHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEEe
Q 029044 156 IR--DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 156 v~--dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
++ |+++++++++++|+++...+ .+++.+||+|||||+|||.+.
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 98 99999999999999985432 367999999999999999874
No 11
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.81 E-value=1.4e-18 Score=124.23 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=86.4
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC----eEEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
|+||.|.|+|++++++||+++||+++......+......+|+..++ ..+++........ ....+.+..|++|.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~ 77 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFA 77 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEE
Confidence 5799999999999999999999999987654333334556777654 3566554322211 11223457899999
Q ss_pred ECCHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeEEEE
Q 029044 156 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 156 v~dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~iEl~ 196 (200)
++|+++++++++++|+++...+ .+++.+||+|||||+|||+
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 9999999999999999997654 3567899999999999985
No 12
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.81 E-value=1.5e-18 Score=129.83 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=87.6
Q ss_pred CCceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe----EEEEEecCCCCCCCCCCCCCCc
Q 029044 73 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGR 148 (200)
Q Consensus 73 ~~~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~~~l~~~~~~~~~~~~~~~~~~ 148 (200)
+.-.+++++||.|.|.|++++++||+++|||++..+..........+++..++. .+.+....... ....+.+
T Consensus 11 ~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~g 86 (150)
T TIGR00068 11 PKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTE----KYDLGNG 86 (150)
T ss_pred cccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCC----cccCCCc
Confidence 344577999999999999999999999999998765543333334455554422 23332211111 1112346
Q ss_pred eeEEEEEECCHHHHHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEEeC
Q 029044 149 DRHTCIAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
..|++|.|+|+++++++|+++|+++...+ .+.+.+||+|||||+|||++..
T Consensus 87 ~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 87 FGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred eeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 78999999999999999999999875432 2346789999999999999864
No 13
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=1.9e-18 Score=123.75 Aligned_cols=117 Identities=21% Similarity=0.373 Sum_probs=88.1
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
|.+++||.|.|+|++++++||+++|||+.....+.. ...++..++..+++......... .......+..|++|.+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGSQKINLHPVGGEFEP-AAGSPGPGSDDLCLIT 75 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCCEEEEEecCCCccCc-CccCCCCCCceEEEEe
Confidence 468999999999999999999999999998654321 23456777777777664432211 1122334568999999
Q ss_pred C-CHHHHHHHHHHCCCeEEecC-------CCceEEEEECCCCCeEEEEEe
Q 029044 157 R-DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 157 ~-dv~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+ ++++++++++++|+++...+ .+++.+||+|||||+||++++
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 7 49999999999999885432 235789999999999999875
No 14
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.81 E-value=5.7e-19 Score=127.52 Aligned_cols=119 Identities=20% Similarity=0.400 Sum_probs=88.7
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCC--CCCCCCceeEEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 156 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~f~v 156 (200)
+++|+.|.|+|++++++||+++|||+..............+++..++..++|........... ....+.+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 478999999999999999999999998765433333446677878878888876432221111 011245678999999
Q ss_pred CCHHHHHHHHHHCCCeEEec-C----CCceEEEE--ECCCCCeEEEEE
Q 029044 157 RDVSKLKMILDKAGISYTLS-K----SGRPAIFT--RDPDANALEFTQ 197 (200)
Q Consensus 157 ~dv~~~~~~l~~~G~~~~~~-~----~g~~~~~~--~DPdGn~iEl~e 197 (200)
+|+++++++++++|+++..+ + .|.+.+|+ +||||++||+.|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 99999999999999988643 1 34466677 799999999986
No 15
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.80 E-value=2.4e-18 Score=127.89 Aligned_cols=114 Identities=17% Similarity=0.252 Sum_probs=82.2
Q ss_pred ceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCC-ceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEE
Q 029044 75 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 153 (200)
Q Consensus 75 ~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 153 (200)
+.+.+++||+|.|+|++++++||+++|||++..+....... ..+.|+..+.. .+.+..... + .+++.|+|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~~------~--~~~~~Hia 72 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVGG------P--DGKLHHFS 72 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEecC------C--CCCceEEE
Confidence 35678999999999999999999999999986654221111 23567765543 222221111 1 24578999
Q ss_pred EEECCHHH---HHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEE
Q 029044 154 IAIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 154 f~v~dv~~---~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e 197 (200)
|.|+|+++ +.++|+++|+++..++ .+.+.+||+|||||.|||.+
T Consensus 73 f~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 73 FFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 99998777 5789999999986543 23578999999999999975
No 16
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.80 E-value=1.2e-18 Score=122.35 Aligned_cols=110 Identities=40% Similarity=0.745 Sum_probs=86.5
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe-EEEEEecCCCCCCCCCCCCCCceeEEEEEECC
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 158 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 158 (200)
++|++|.|+|++++++||+++|||++....... ....|+..++. .+++...+..... +...++..|++|.++|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCC
Confidence 589999999999999999999999987543321 23467887765 7787765544321 2233456899999999
Q ss_pred HHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeEEE
Q 029044 159 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 195 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~iEl 195 (200)
+++++++++++|+++...+ .+.+.+++.|||||+|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 9999999999999986643 466889999999999996
No 17
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.80 E-value=2.9e-18 Score=125.47 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=85.8
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCC-CceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
|.+++||.|.|+|++++++||+++|||+...+.+.... .....|+..++..+.+...... ...+..|++|.
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--------~~~~~~Hiaf~ 73 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL--------QERTYNHIAFK 73 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC--------CCCCceEEEEE
Confidence 67899999999999999999999999988765432211 1122345556666766532211 11246899999
Q ss_pred EC--CHHHHHHHHHHCCCeEEecC---C-CceEEEEECCCCCeEEEEEeC
Q 029044 156 IR--DVSKLKMILDKAGISYTLSK---S-GRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 156 v~--dv~~~~~~l~~~G~~~~~~~---~-g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|+ |+++++++|+++|+++.... + +++++||+|||||.|||.+.+
T Consensus 74 v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 74 ISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred cCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCC
Confidence 98 79999999999999886532 2 368999999999999998753
No 18
>PRK10291 glyoxalase I; Provisional
Probab=99.79 E-value=2.6e-18 Score=125.07 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=82.0
Q ss_pred EEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe----EEEEEecCCCCCCCCCCCCCCceeEEEEEECCH
Q 029044 84 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 159 (200)
Q Consensus 84 ~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv 159 (200)
+|.|+|++++++||+++|||++..+...+...+..+|+..++. .+++...... .....+.+..|++|.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV----DKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCC----CCCcCCCCeeEEEEEeCCH
Confidence 4789999999999999999999876655555566777766532 3444321111 1122345678999999999
Q ss_pred HHHHHHHHHCCCeEEecC----CC-ceEEEEECCCCCeEEEEEe
Q 029044 160 SKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 160 ~~~~~~l~~~G~~~~~~~----~g-~~~~~~~DPdGn~iEl~e~ 198 (200)
++++++|+++|+++...+ .+ .+.+||+|||||.|||++.
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE 120 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence 999999999999886431 23 3568899999999999985
No 19
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.78 E-value=3.7e-18 Score=124.92 Aligned_cols=110 Identities=23% Similarity=0.399 Sum_probs=85.3
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC--
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 157 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~-- 157 (200)
|+||.|.|+|++++++||+++|||++....+ ..+++..++..+.+...+... .....++..|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDIP----RNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCCC----cCCcCccceEEEEEecHH
Confidence 5899999999999999999999999875432 234577777777776544221 1112345689999998
Q ss_pred CHHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEEeC
Q 029044 158 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|+++++++++++|+++...+ .+++.+||+|||||+|||.+.+
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 59999999999999985432 3668999999999999999864
No 20
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.78 E-value=6.9e-18 Score=127.39 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=85.2
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC---CeEEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
+++||.|.|+|++++.+||+++|||++..+.. ....|+..+ +..+.++....... .....+++.|++|.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGGGPGAVVDVLEEPDQPR---GRPGAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCCCCCCEEEEEeCCCCCC---CcccCCceEEEEEE
Confidence 57999999999999999999999999986543 133444444 45777777432211 11122457899999
Q ss_pred ECC---HHHHHHHHHHCCCeEEecC--CCceEEEEECCCCCeEEEEEeC
Q 029044 156 IRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 156 v~d---v~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|+| +++++++|+++|+++.... .+.+++||+|||||.|||++..
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 997 8999999999999864422 3457899999999999999864
No 21
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.78 E-value=1.3e-17 Score=127.02 Aligned_cols=118 Identities=22% Similarity=0.358 Sum_probs=84.7
Q ss_pred ceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEE
Q 029044 75 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 154 (200)
Q Consensus 75 ~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 154 (200)
|.|.+++||.|.|+|++++++||+++|||++......+.......|+..++....+........ ..+++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~------~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAG------ARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCC------CCCCceEEEE
Confidence 6788999999999999999999999999998765433322234577776543222322211111 1235689999
Q ss_pred EECC---HHHHHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEEe
Q 029044 155 AIRD---VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 155 ~v~d---v~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
.|+| +++++++|+++|+++...+ .....+|++|||||+|||.+.
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 9985 5588999999999985332 123468999999999999986
No 22
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=2.5e-17 Score=118.64 Aligned_cols=113 Identities=28% Similarity=0.369 Sum_probs=85.1
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC--eEEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
++++||.|.|+|++++++||+++|||++....+ ..+++..++ ..+.+...+... .......+..|++|.
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~~~~~l~l~~~~~~~---~~~~~~~~~~hi~f~ 71 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGGKRPLLVLEEDPDAP---PAPPGATGLYHFAIL 71 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCCCeEEEEEEeCCCCC---cccCCCCcEEEEEEE
Confidence 479999999999999999999999999987632 346676665 345555543321 112233457899999
Q ss_pred EC---CHHHHHHHHHHCCCeEEecC--CCceEEEEECCCCCeEEEEEeC
Q 029044 156 IR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 156 v~---dv~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
+. ++++++++++++|+++.... ...+.+||+|||||+|||.+.-
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEec
Confidence 97 58999999999999885432 2347899999999999998653
No 23
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.78 E-value=4.3e-17 Score=117.19 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=85.3
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECCHHHH
Q 029044 83 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 162 (200)
Q Consensus 83 v~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv~~~ 162 (200)
..|.|+|++++++||+++||+++....+.+......+.+..++..+.+.................+..|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 46889999999999999999999876533332223445777777777765443221111112223457999999999999
Q ss_pred HHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEEe
Q 029044 163 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 163 ~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+++++++|+++... ++|.+.++++|||||+|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 99999999988643 3567889999999999999874
No 24
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=2e-17 Score=119.84 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=81.8
Q ss_pred eeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 76 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 76 ~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
.+.+++||.|.|+|++++.+||+++|||++..+.+ ...|+..++....+...... .+..|++|.
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~~~i~l~~~~----------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARDHTLVYIEGD----------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCccEEEEEEeCC----------CceEEEEEE
Confidence 57899999999999999999999999999875432 24677776432222221111 134789999
Q ss_pred ECC---HHHHHHHHHHCCCeEEecC-------CCceEEEEECCCCCeEEEEEeC
Q 029044 156 IRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 156 v~d---v~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|++ +++++++++++|+++.... .+.+.+||+|||||.||+....
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 984 9999999999999886532 3356789999999999998753
No 25
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=1.9e-17 Score=119.85 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=86.7
Q ss_pred eEeEEEEEcCCHHHHHHHHHhcc---CCEEeeecCCCCCCceEEEEEe-CCeEEEEEecCCCCCCCCCCCCCCceeEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 154 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 154 (200)
+++||.|.|+|++++++||+++| ||++....+. ...|... ++..+.+......... .......+..|++|
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-----~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-----GRSWRAGDGGTYLVLQQADGESAG-RHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-----CceEEecCCceEEEEEecccCCCc-ccccCCcCeeEEEE
Confidence 57999999999999999999999 9999876421 2245543 5667888765544322 11123345789999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEecC-------CCceEEEEECCCCCeEEEEEe
Q 029044 155 AIR---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 155 ~v~---dv~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdGn~iEl~e~ 198 (200)
.|. |+++++++++++|+++.... .+.+.+||+|||||+|||+.+
T Consensus 75 ~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 75 RAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 997 58899999999999986532 256789999999999999864
No 26
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.77 E-value=1.4e-17 Score=119.80 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=82.5
Q ss_pred ceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC-e---EEEEEecCCCCCCCCCCCCCCcee
Q 029044 75 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-E---MIHLMELPNPDPLSGRPEHGGRDR 150 (200)
Q Consensus 75 ~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~---~~~l~~~~~~~~~~~~~~~~~~~~ 150 (200)
|.+.+++|+.|.|+|++++++||+++|||++..+.+ ..+|+..++ . .+.+.. . ...+..
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~--~---------~~~~~~ 64 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTE--S---------PEAGLG 64 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEee--C---------CCCceE
Confidence 567899999999999999999999999999887543 235665532 1 222221 1 113578
Q ss_pred EEEEEEC---CHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCeEEEEEeC
Q 029044 151 HTCIAIR---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 151 hi~f~v~---dv~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|++|.++ |+++++++++++|+++... +.++..+||+|||||.||+....
T Consensus 65 h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 65 HIAWRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEec
Confidence 9999997 6889999999999987432 34567899999999999998754
No 27
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.77 E-value=2.3e-17 Score=118.73 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=79.8
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-C-eEEEEEecCCCCCCCCCCCCCCceeEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 154 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 154 (200)
+.+++||.|.|+|++++++||+++|||++....+. ..+|+... + ....+..... ...+..|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~---------~~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIVLREA---------DTAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEEeccC---------CCCCeeEEEE
Confidence 67899999999999999999999999998765421 12455542 1 1122221111 1134689999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEEe
Q 029044 155 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 155 ~v~---dv~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
.+. |+++++++++++|+++...+ ..++.+||+|||||.|||.+.
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 997 88999999999999986532 235789999999999999864
No 28
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.77 E-value=2.3e-17 Score=118.69 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=80.7
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC-
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 157 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~- 157 (200)
+++||.|.|+|+++|++||+++|||++....+. ..+|+..++..+.+...+.. ..+..|++|.++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-----GALYLRMDDRAWRIAVHPGE---------ADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC-----CeEEEEccCCceEEEEEeCC---------CCceeEEEEEECC
Confidence 689999999999999999999999998754221 34677776544434332221 124579999997
Q ss_pred --CHHHHHHHHHHCCCeEEecC-------CCceEEEEECCCCCeEEEEEe
Q 029044 158 --DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 158 --dv~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdGn~iEl~e~ 198 (200)
|+++++++|+++|+++...+ .+.+.+||+|||||.||+...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 58899999999999987532 234789999999999999854
No 29
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=2.3e-17 Score=118.46 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=76.5
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECC
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 158 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 158 (200)
++.|+.|.|+|++++++||+++||+++....+ . . ..+ .++..+++...............+.+..|++|.|+|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~---~-~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d 74 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E---N-VTF-EGGFALQEGYSWLEGISKADIIEKSNNFELYFEEED 74 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c---e-EEE-eccceeccchhhhccCCcccccccCCceEEEEEehh
Confidence 68899999999999999999999999865332 1 1 112 122222221110000000111122344799999999
Q ss_pred HHHHHHHHHHCCC-eEEec----CCCceEEEEECCCCCeEEEEEe
Q 029044 159 VSKLKMILDKAGI-SYTLS----KSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 159 v~~~~~~l~~~G~-~~~~~----~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+++++++|+++|+ ++... ++|.+.++|+|||||+|||.+.
T Consensus 75 vd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 75 FDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 9999999999985 56432 3567899999999999999874
No 30
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=3.7e-17 Score=116.39 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=80.5
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
|.+++||.|.|+|++++++||++ |||+.....+ ..+|+..++....++...... ..+..|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDPFVYVARKGE--------KARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCccEEEEcccCC--------cCcccEEEEEE
Confidence 46899999999999999999999 9999876532 246776644332332221111 13567999999
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCeEEEEE
Q 029044 157 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 157 ~dv~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdGn~iEl~e 197 (200)
+|.+++.+.+++.|...... +.+++.+||+|||||.|||+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999999977543 356789999999999999974
No 31
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.76 E-value=4.8e-17 Score=115.39 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=83.0
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC-eEEEEEecCCCCCCCCCCCCCCceeEEEEEECC
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 158 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 158 (200)
+.||.|.|+|++++++||+++||+++..... .. ...+++..++ ..+.++...... ...+...|++|.++|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG--GDYAVFSTGGGAVGGLMKAPEPA------AGSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC--CceEEEEeCCccEEEEecCCCCC------CCCCCeEEEEEEeCC
Confidence 3799999999999999999999999976543 11 1335566664 355555544332 112345799999999
Q ss_pred HHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEE
Q 029044 159 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e 197 (200)
+++++++++++|+++..++ ++++.++|+|||||.|||+|
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 9999999999999886542 36688999999999999985
No 32
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=4.1e-17 Score=115.70 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=81.2
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC---CeEEEEEecCCCCCCCCCCCCCCceeEEEEEECC
Q 029044 82 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 158 (200)
Q Consensus 82 hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 158 (200)
||.|.|.|++++++||+++|||++........ ......+..+ +..+++........ ......++..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPAA--MSGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCccc--cccccCCCceEEEEEehH
Confidence 89999999999999999999999987654211 1222223322 23444443333221 112233456799999999
Q ss_pred HHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeEEEEE
Q 029044 159 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~iEl~e 197 (200)
+++++++++++|+++...+ .+++.+|++|||||.|||+|
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 9999999999999987543 35689999999999999975
No 33
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.76 E-value=2e-17 Score=119.10 Aligned_cols=107 Identities=26% Similarity=0.413 Sum_probs=82.4
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC-
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 157 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~- 157 (200)
+++||.|.|+|++++.+||+++|||++....+ ...|+..++..+.+...+... ...+..|++|.++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~-------~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANVG-------PAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCCC-------CCCCeeeEEEEeCH
Confidence 57999999999999999999999999876543 235676776655554322211 1234689999994
Q ss_pred -CHHHHHHHHHHCCCeEEecC-CCceEEEEECCCCCeEEEEEe
Q 029044 158 -DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 158 -dv~~~~~~l~~~G~~~~~~~-~g~~~~~~~DPdGn~iEl~e~ 198 (200)
|+++++++++++|+++.... ..++.+||+|||||.|||+..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeC
Confidence 89999999999999885543 345789999999999999864
No 34
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.76 E-value=2.3e-17 Score=118.42 Aligned_cols=116 Identities=21% Similarity=0.406 Sum_probs=84.1
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCC-CceEEEEEe----CCeEEEEEecCCCCCCCCCCCCCCceeEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 153 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~----g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 153 (200)
+++||.|.|.|++++++||+++|||+.......... .....++.. ++..++|+..+..... ......+..|++
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~ 78 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIA 78 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEE
Confidence 478999999999999999999999999876542221 112233332 3446777765443221 112234568999
Q ss_pred EEEC---CHHHHHHHHHHCCCeEEec--CCCceEEEEECCCCCeEEEE
Q 029044 154 IAIR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 154 f~v~---dv~~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdGn~iEl~ 196 (200)
|.++ |+++++++++++|+++... ..+++.+||+|||||+|||+
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 9998 5799999999999987543 34678999999999999984
No 35
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=1e-17 Score=125.81 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=80.3
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCC-CCCceEEEEEeCCe--EEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
+++||+|.|+|++++++||+++||+++......+ ......+|+..++. .+......-. ...++++.|+||.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~------~~~~~g~~Hiaf~ 74 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALA------QGPESGVHHAAFE 74 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHh------cCCCCceeEEEEE
Confidence 4799999999999999999999999987543322 12235677776532 1111000000 0113568999999
Q ss_pred ECCHHHHH---HHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEE
Q 029044 156 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 156 v~dv~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e 197 (200)
|+|++++. ++|+++|+++.+++ .....+|++|||||.|||..
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence 99999886 99999999987642 12346799999999999985
No 36
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.75 E-value=2.9e-18 Score=123.01 Aligned_cols=117 Identities=25% Similarity=0.436 Sum_probs=85.3
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCC--CCCCceEEEEEeCCeEEEEEecCCCCCCCCCCC-CCCceeEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPH--DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE-HGGRDRHTCIA 155 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~-~~~~~~hi~f~ 155 (200)
+|+||+|.|+|++++++||+++|||++...... ........++..++..+.+.............. ......|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 689999999999999999999999999987651 222334566777777777776655443221110 00134678887
Q ss_pred EC---CHHHHHHHHHHCCCeEEecC----C-CceEEEEECCCCCeEEE
Q 029044 156 IR---DVSKLKMILDKAGISYTLSK----S-GRPAIFTRDPDANALEF 195 (200)
Q Consensus 156 v~---dv~~~~~~l~~~G~~~~~~~----~-g~~~~~~~DPdGn~iEl 195 (200)
+. |+++++++|+++|+++...+ . ....+|++|||||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 76 77888999999999987653 2 33446799999999997
No 37
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.75 E-value=2.5e-17 Score=118.69 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=87.9
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCC-CCCceEEEEEeCCeEEEEEecCCCCCCCC--CCCCCCceeEEEEEE
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 156 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~f~v 156 (200)
++||.|.|+|++++.+||+++|||+.....+.. ......+|+..++..+++++......... ....+.+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999998755432 22345677888888888886543322111 112446678999999
Q ss_pred CCHHHHHHHHHHCCCeEEecC----CCceEEEEECCC---CCeEEEEE
Q 029044 157 RDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPD---ANALEFTQ 197 (200)
Q Consensus 157 ~dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPd---Gn~iEl~e 197 (200)
+|+++++++++++|+++...+ .+++.+++.||+ |++|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999986543 234555555555 99999986
No 38
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=4.8e-17 Score=118.36 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=77.9
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC-----------CCceEEEEEeC----CeEEEEEecCCCCCCCCCC
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVG----AEMIHLMELPNPDPLSGRP 143 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g----~~~~~l~~~~~~~~~~~~~ 143 (200)
++.|++|+|+|+++|++||+++|||++..+...+. .....+++..+ +..++|....+..+ .
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~----~ 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGD----Y 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCC----C
Confidence 68999999999999999999999999877554433 11122334432 23566665333221 1
Q ss_pred CCCCceeEEEEEECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEEE
Q 029044 144 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 144 ~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~e 197 (200)
..+.+ |++|.|++. ++.++|+++|+++...+.+ .+|++||||+.|||+-
T Consensus 78 ~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 22333 677777776 5669999999999876654 8999999999999973
No 39
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.75 E-value=5.2e-17 Score=115.42 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=83.0
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-CeEEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
++++|+.|.|+|++++++||+++|||++....+ ..+|+..+ +..+.+....... .+..|++|.|
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~h~~~~v 65 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSEDDHHSLVLTEGDE---------PGVDALGFEV 65 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCCCcEEEEEEeCCC---------CCceeEEEEc
Confidence 478999999999999999999999999987543 34677776 3443333222211 2468999999
Q ss_pred C---CHHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEEe
Q 029044 157 R---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 157 ~---dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
. ++++++++++++|+++...+ .+++.+||.||+||.||+...
T Consensus 66 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 66 ASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 7 68899999999999986543 356899999999999999864
No 40
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.75 E-value=6.1e-17 Score=116.86 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=80.1
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC-eEEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
.+++|+.|.|+|++++++||+++|||+.....+ ..+++..++ ..+.+..... .....|++|.+
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~l~~~~~~~----------~~~~~h~a~~v 66 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFG------PFAVVKLDNGVSLDFAQPDG----------EIPPQHYAFLV 66 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC------CEEEEEcCCCcEEEEecCCC----------CCCcceEEEEe
Confidence 578999999999999999999999999876322 123344433 3455443211 12347999988
Q ss_pred C--CHHHHHHHHHHCCCeEEec-----------CCCceEEEEECCCCCeEEEEEeC
Q 029044 157 R--DVSKLKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 157 ~--dv~~~~~~l~~~G~~~~~~-----------~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
+ |+++++++++++|+++... .+|++.+||+|||||.|||++.+
T Consensus 67 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 67 SEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 7 6999999999999987432 24679999999999999999864
No 41
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.75 E-value=1.5e-16 Score=113.67 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=84.4
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECCHHHH
Q 029044 83 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 162 (200)
Q Consensus 83 v~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv~~~ 162 (200)
+.|+|+|++++.+||+++||+++.............+.+..++..+.+........ .......+..|++|.|+|++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG--SPASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC--CCCCCCCceEEEEEEeCCHHHH
Confidence 56889999999999999999999876543333333455677777777765322111 1112234457999999999999
Q ss_pred HHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEE
Q 029044 163 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 163 ~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e 197 (200)
++++.++|+++..+ .+|.+.++++|||||.|||.+
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 83 FARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999999988543 356789999999999999986
No 42
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.75 E-value=2.9e-17 Score=116.21 Aligned_cols=106 Identities=23% Similarity=0.392 Sum_probs=81.2
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC--CH
Q 029044 82 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DV 159 (200)
Q Consensus 82 hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--dv 159 (200)
||.|.|+|++++++||+++|||++....+ ...|+..++..+.+...+... ....+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~------~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAGLWICLMEEDSLQ------GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecCeEEEeccCCCcC------CCCCCccEEEEEcCHHHH
Confidence 79999999999999999999999876542 235666676666554432211 12234679999995 79
Q ss_pred HHHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEEeC
Q 029044 160 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 160 ~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
++++++++++|+++... ..+++.+|++|||||+|||+..+
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 112 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAGT 112 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEeCc
Confidence 99999999999998543 13578999999999999999754
No 43
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.75 E-value=6.4e-17 Score=115.65 Aligned_cols=108 Identities=21% Similarity=0.311 Sum_probs=81.3
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
+.+|+|+.|.|+|++++++||+++|||+.....+ ...|+..++...+++...... ..+..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGSEHHILRLRRSD--------RNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCCccEEEEeccCC--------CCCCceEEEEe
Confidence 4689999999999999999999999999875433 245666544333333322111 12357999999
Q ss_pred C---CHHHHHHHHHHCCCeEEecC------CCceEEEEECCCCCeEEEEEe
Q 029044 157 R---DVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 157 ~---dv~~~~~~l~~~G~~~~~~~------~g~~~~~~~DPdGn~iEl~e~ 198 (200)
. ++++++++++++|+++...+ .+++.++|+||+||.|||+..
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 4 78999999999999986432 356789999999999999875
No 44
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=8.3e-17 Score=115.78 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=80.5
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCC---CCC---CCCCCCCceeEEE
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD---PLS---GRPEHGGRDRHTC 153 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~---~~~---~~~~~~~~~~hi~ 153 (200)
+.|+.|+|+|++++.+||+++|||+.....+.+ ....+..++..+.+....... +.. ..+....+..|++
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG----DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIA 76 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC----cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEE
Confidence 469999999999999999999999987543321 112233455555554332110 000 1122223346999
Q ss_pred EEECCHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEEe
Q 029044 154 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 154 f~v~dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
|.|+|+++++++++++|+++... ++|.+.++++|||||.|||.++
T Consensus 77 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 77 FVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999999999988543 3466789999999999999874
No 45
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.74 E-value=1.5e-16 Score=116.19 Aligned_cols=113 Identities=25% Similarity=0.371 Sum_probs=83.7
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-C--eEEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
+++||.|.|+|++++++||+++|||++....+. ....|+..+ + ..+.++..+.... .....+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~ 72 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFE 72 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEE
Confidence 489999999999999999999999998765432 134566655 2 3566655433211 1223456899999
Q ss_pred ECCHH---HHHHHHHHCCCeEEec--CCCceEEEEECCCCCeEEEEEeC
Q 029044 156 IRDVS---KLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 156 v~dv~---~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|+|.+ +++++|+++|+++... ..+++.+|++|||||.|||.+..
T Consensus 73 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 73 VDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcC
Confidence 98655 6889999999987653 23468899999999999999753
No 46
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.74 E-value=1e-16 Score=117.54 Aligned_cols=106 Identities=20% Similarity=0.349 Sum_probs=79.9
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC--e--EEEEEecCCCCCCCCCCCCCCceeEEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--E--MIHLMELPNPDPLSGRPEHGGRDRHTC 153 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~--~~~l~~~~~~~~~~~~~~~~~~~~hi~ 153 (200)
.+++||.|.|+|++++++||+++|||++..... ...+|+..++ . .+.+...+. ...++.|++
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-----~~~~~~~~~~~~~~~~i~l~~~~~---------~~~g~~hia 67 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK-----GRGAFLRAAGGGDHHNLFLIKTPA---------PMAGFHHAA 67 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec-----CcEEEEECCCCCCCcEEEEecCCC---------CCCcceEEE
Confidence 479999999999999999999999999876543 1356777652 2 344433221 124678999
Q ss_pred EEECCHHHHH---HHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEE
Q 029044 154 IAIRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 154 f~v~dv~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e 197 (200)
|.|+|++++. ++|+++|+++...+ .+.+.+||+|||||+|||..
T Consensus 68 f~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 68 FEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 9999887665 69999999876432 23466899999999999985
No 47
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.74 E-value=1.1e-16 Score=121.14 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=78.1
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 157 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~ 157 (200)
++++||+|.|+|++++++||+++|||++......+.......|+..++....+..... .+.++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~---------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGG---------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecC---------CCCceeEEEEEcC
Confidence 4799999999999999999999999998754332222223466655433222211111 1235789999998
Q ss_pred C---HHHHHHHHHHCCCeE--EecC-----CCceEEEEECCCCCeEEEEEe
Q 029044 158 D---VSKLKMILDKAGISY--TLSK-----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 158 d---v~~~~~~l~~~G~~~--~~~~-----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
| +++++++|+++|+.. ...+ .+.+.+||+|||||.||+++.
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 5 778899999999863 2221 234679999999999999853
No 48
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.74 E-value=1.1e-16 Score=120.40 Aligned_cols=111 Identities=17% Similarity=0.294 Sum_probs=82.1
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCC---CCCceEEEEEeCCe--EEEEEecCCCCCCCCCCCCCCceeEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHD---KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHT 152 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~hi 152 (200)
++++||.|.|+|++++++||+++|||++....... ......+|+..++. .+.+...+. ..++.|+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~----------~~g~~Hi 77 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGPG----------PKRIHHL 77 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCCC----------CceeEEE
Confidence 47999999999999999999999999987643221 11234567776542 233332211 2457899
Q ss_pred EEEECCHH---HHHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEEe
Q 029044 153 CIAIRDVS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 153 ~f~v~dv~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+|.|+|.+ +++++|+++|+++...+ .+.+.+|++|||||.|||...
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 99998654 68999999999986532 356889999999999999854
No 49
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.73 E-value=1.8e-16 Score=113.27 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=78.4
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe--EEEEEecCCCCCC-CCCCCCCCceeEEEEEECC
Q 029044 82 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPL-SGRPEHGGRDRHTCIAIRD 158 (200)
Q Consensus 82 hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~~~l~~~~~~~~~-~~~~~~~~~~~hi~f~v~d 158 (200)
++.|.|+|++++++||+++|||+.....+ ....+..++. .+.+......... ...+..+.+ .|++|.|+|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v~d 76 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQG-LILNFEVDD 76 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCCCCcchhcccCCce-EEEEEEECC
Confidence 57899999999999999999999986532 2234544443 4444433222111 111223333 599999999
Q ss_pred HHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEE
Q 029044 159 VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e 197 (200)
+++++++++++|+++..+ ++|.+.++++|||||+|||+|
T Consensus 77 id~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 77 VDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 999999999999987543 246689999999999999986
No 50
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.73 E-value=2.2e-16 Score=117.49 Aligned_cols=106 Identities=16% Similarity=0.304 Sum_probs=79.8
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeE--EEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
.+++||.|.|+|++++++||+++|||++..... ....|+..++.. +.+.. . ..++..|++|.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~l~~~~~~~~~~l~~--~---------~~~~~~hiaf~ 66 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG-----DQMAFLRCNSDHHSIAIAR--G---------PHPSLNHVAFE 66 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC-----CeEEEEECCCCcceEEEcc--C---------CCCceEEEEEE
Confidence 379999999999999999999999999875432 134677776433 33321 1 11356899999
Q ss_pred ECCHHHHH---HHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEEeC
Q 029044 156 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 156 v~dv~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|+|++++. ++|+++|+++...+ .+.+.+||+|||||.|||++..
T Consensus 67 v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 67 MPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 99877774 89999999986432 2346789999999999998753
No 51
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.72 E-value=4e-16 Score=113.85 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=80.9
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe--EEEEEecCCCCCCCCCCCCCCceeEEEEEECC
Q 029044 81 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 158 (200)
Q Consensus 81 ~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 158 (200)
+||.|.|+|++++++||+++||+++......+ ......|+..++. .+.+..... ..+..|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHHDLALFPGPE----------RPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcceEEEEcCCC----------CCCeeEEEEEcCC
Confidence 59999999999999999999999997654432 2235577777654 333332111 2457899999997
Q ss_pred H---HHHHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEEeC
Q 029044 159 V---SKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 159 v---~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
+ ++++++++++|+++...+ .+.+.++|+|||||+|||.+..
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 6 478999999999986532 2357899999999999999753
No 52
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=3e-16 Score=112.26 Aligned_cols=114 Identities=26% Similarity=0.509 Sum_probs=83.3
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC-eEEEEEecCCCCCCC--CCCCCCCceeEEEEEE
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLS--GRPEHGGRDRHTCIAI 156 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~~~l~~~~~~~~~~--~~~~~~~~~~hi~f~v 156 (200)
+.+|.|.|.|++++++||+++|||++..... . ..+++..++ ..+.++......... ..+....+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~--~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED--R---RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC--C---ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 4689999999999999999999999986421 1 236677776 445555433221100 0111234567999999
Q ss_pred C--CHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCeEEEEEe
Q 029044 157 R--DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 157 ~--dv~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+ |++++++++.++|+++... ..+++.+||+|||||+||++++
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 5 8999999999999988654 3467899999999999999874
No 53
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.72 E-value=2.4e-16 Score=113.06 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=79.1
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC--CeEEEEEecCCCCCCCCCCCCCCceeEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 154 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 154 (200)
+++++|+.|.|+|++++++||+++|||++....+ ..+|+... .....+...... ..+..|++|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~hi~~ 66 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKAP---------VAGLGHIAF 66 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeCC---------CCceeEEEE
Confidence 6789999999999999999999999999875432 23455432 122222221111 134689999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEec----C-CCceEEEEECCCCCeEEEEEe
Q 029044 155 AIR---DVSKLKMILDKAGISYTLS----K-SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 155 ~v~---dv~~~~~~l~~~G~~~~~~----~-~g~~~~~~~DPdGn~iEl~e~ 198 (200)
.+. |+++++++++++|+++... . .+++.+|+.|||||.||++..
T Consensus 67 ~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 67 RVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 994 7899999999999998643 1 235789999999999999864
No 54
>PRK06724 hypothetical protein; Provisional
Probab=99.71 E-value=3.2e-16 Score=114.39 Aligned_cols=107 Identities=22% Similarity=0.292 Sum_probs=75.0
Q ss_pred eeceEeEEEEEcCCHHHHHHHHHhcc---CCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEE
Q 029044 76 GVVSVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 152 (200)
Q Consensus 76 ~i~~l~hv~l~v~Dl~~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi 152 (200)
++.+++||.|.|+|+++|++||+++| |++.... ..| ..++..+.|....... . ...+..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~---------~~~-~~g~~~l~l~~~~~~~-----~-~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE---------VAY-STGESEIYFKEVDEEI-----V-RTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee---------Eee-eCCCeeEEEecCCccc-----c-CCCCceeE
Confidence 35579999999999999999999966 5554321 011 1233334443322110 1 12346899
Q ss_pred EEEE---CCHHHHHHHHHHCCCeEEecC-------CCceEEEEECCCCCeEEEEEe
Q 029044 153 CIAI---RDVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 153 ~f~v---~dv~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdGn~iEl~e~ 198 (200)
||.| +|+++++++++++|+++...+ +|.+.+||+|||||.||++..
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 9998 589999999999999985432 334789999999999999864
No 55
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=4.2e-16 Score=111.99 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=74.8
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCC--C-CCCCCCCceeEEEE--EE
Q 029044 82 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL--S-GRPEHGGRDRHTCI--AI 156 (200)
Q Consensus 82 hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~--~-~~~~~~~~~~hi~f--~v 156 (200)
||.|.|+|++++++||+++|||++..... ....+..++..+.+......... . .......+..|++| .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 89999999999999999999999865322 11223344444444332221110 0 01111223457765 55
Q ss_pred CCHHHHHHHHHHCCCeEEecC--------CCceEEEEECCCCCeEEEEEe
Q 029044 157 RDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 157 ~dv~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+|+++++++|+++|+++..++ .+.+.+||+|||||.|||..+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 699999999999999986432 235889999999999999864
No 56
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=4.1e-16 Score=112.52 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=78.3
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-CeEEEEEecCCCCCCCC---CCCCCCceeEEEEE
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSG---RPEHGGRDRHTCIA 155 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~~~~~~~~~~~---~~~~~~~~~hi~f~ 155 (200)
+.+|.|.|+|+++|++||+. |||+.......+. ..++..+ +..+.|...+....... ......+..|++|.
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~ 75 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLS 75 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEe
Confidence 46799999999999999987 8999875333221 2444454 45666655322110000 00123344699999
Q ss_pred EC---CHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeEEEEE
Q 029044 156 IR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 156 v~---dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~iEl~e 197 (200)
|+ |+++++++++++|+++..++ .+.+.+||+|||||+|||+.
T Consensus 76 v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 76 ADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 98 68899999999999986543 34568999999999999985
No 57
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.70 E-value=5.2e-16 Score=111.44 Aligned_cols=104 Identities=25% Similarity=0.372 Sum_probs=79.5
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECCHHH
Q 029044 82 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 161 (200)
Q Consensus 82 hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv~~ 161 (200)
...|.|+|++++++||++ |||+.....+. ...++..++..++|...+...+ . ....|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~~-----~--~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGDLELHFFAHPDLDP-----A--TSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCCEEEEEEecCcCCC-----C--CCcceEEEEeCCHHH
Confidence 367899999999999999 99999865442 2344666777888876542211 1 112579999999999
Q ss_pred HHHHHHHCCCeEE-------ec----CCCceEEEEECCCCCeEEEEEe
Q 029044 162 LKMILDKAGISYT-------LS----KSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 162 ~~~~l~~~G~~~~-------~~----~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
++++|+++|+++. .. .+|.+.++|+|||||+|||.|+
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 9999999999742 11 2577899999999999999985
No 58
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.70 E-value=1e-15 Score=107.74 Aligned_cols=105 Identities=30% Similarity=0.470 Sum_probs=80.1
Q ss_pred EEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECCHHHHH
Q 029044 84 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 163 (200)
Q Consensus 84 ~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv~~~~ 163 (200)
.|.|+|++++++||+++|||+.....+. ...+++..++..+++......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPE----PGYAFLSRGGAQLMLSEHDGDEPV-----PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCC----CcEEEEEeCCEEEEEeccCCCCCC-----CCCCcEEEEEEeCCHHHHH
Confidence 5899999999999999999999876531 123556667777777665433211 1233468999999999999
Q ss_pred HHHHHCCCe-EEec----CCCceEEEEECCCCCeEEEEE
Q 029044 164 MILDKAGIS-YTLS----KSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 164 ~~l~~~G~~-~~~~----~~g~~~~~~~DPdGn~iEl~e 197 (200)
++++++|++ +..+ ..+.+.++++|||||.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 999999998 4332 245588999999999999986
No 59
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=1.5e-15 Score=108.81 Aligned_cols=107 Identities=22% Similarity=0.375 Sum_probs=76.9
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECC--
Q 029044 81 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-- 158 (200)
Q Consensus 81 ~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d-- 158 (200)
.|+.|.|+|++++.+||+++||++.....+ . ...|. .++..+.+......... . ++..|++|.+.+
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~~~-~~~~~~~~~~~~~~~~~-----~-~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAKFL-LEDPRLNFVLNERPGAP-----G-GGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeEEE-ecCCceEEEEecCCCCC-----C-CCeeEEEEEeCCHH
Confidence 589999999999999999999999865432 1 22333 33333333332221110 0 356899999986
Q ss_pred -HHHHHHHHHHCCCeEEecCC------CceEEEEECCCCCeEEEEEeC
Q 029044 159 -VSKLKMILDKAGISYTLSKS------GRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 159 -v~~~~~~l~~~G~~~~~~~~------g~~~~~~~DPdGn~iEl~e~~ 199 (200)
++++++++.++|+++...+. +.+.+|++|||||.|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999865431 246799999999999999764
No 60
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.69 E-value=8.2e-16 Score=110.39 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=77.1
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-CeEEEEEecCCCCCC-CCCCCCCCceeEEEEEEC
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPL-SGRPEHGGRDRHTCIAIR 157 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~~~~~~~~~-~~~~~~~~~~~hi~f~v~ 157 (200)
|+||.|.|+|+++|++||+. |||++...... ...+++..+ +..+.+......... ...+....+..|++|.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 57999999999999999975 99998654321 122445555 455555433211100 011112234568999875
Q ss_pred ---CHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEE
Q 029044 158 ---DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 158 ---dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~ 196 (200)
|+++++++++++|+++... ++|.+.++|+|||||.|||+
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 8999999999999987543 34668899999999999996
No 61
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=5.4e-16 Score=110.54 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=76.9
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECCHHHH
Q 029044 83 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 162 (200)
Q Consensus 83 v~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv~~~ 162 (200)
..|.|+|++++++||++ |||++....+ ..+++..++..+.|........ ....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~~~l~l~~~~~~~~--------~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGNCAFYLQDYYVKDW--------AENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCCEEEEeecCCCccc--------ccCCEEEEEECCHHHH
Confidence 46889999999999988 9999987542 3477888877776654222111 1125799999999999
Q ss_pred HHHHHHCCCeEE---------ecCCCceEEEEECCCCCeEEEEE
Q 029044 163 KMILDKAGISYT---------LSKSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 163 ~~~l~~~G~~~~---------~~~~g~~~~~~~DPdGn~iEl~e 197 (200)
+++|+++|+++. ...+|.+.++|+|||||+|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998642 12467899999999999999975
No 62
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.69 E-value=1.1e-15 Score=107.19 Aligned_cols=100 Identities=27% Similarity=0.509 Sum_probs=73.1
Q ss_pred EEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe----EEEEEecCCCCCCCCCCCCCCceeEEEEEECCHH
Q 029044 85 ILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 160 (200)
Q Consensus 85 l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv~ 160 (200)
|.|+|++++++||+++|||++....+ ..+.+..+.. ...+...+... ....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDPP------GPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESSS------SSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCccc------cCCCceeEEEEEEcCHH
Confidence 68999999999999999999998444 2244555422 23344332211 12245689999999999
Q ss_pred HHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEE
Q 029044 161 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 161 ~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~ 196 (200)
+++++++++|+++... .+|.+.++|.|||||+|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 9999999999997543 35679999999999999996
No 63
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.68 E-value=1.3e-15 Score=105.58 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=86.2
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECCHHH
Q 029044 82 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 161 (200)
Q Consensus 82 hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv~~ 161 (200)
|+.|.|+|++++++||+++||++....... .....+++..++..+++...++.... ....+..|++|.++|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHH
Confidence 789999999999999999999999876542 11245667767778888876654321 234556899999999999
Q ss_pred HHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEE
Q 029044 162 LKMILDKAGISYTLSK----SGRPAIFTRDPDANALEF 195 (200)
Q Consensus 162 ~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl 195 (200)
++++++++|+.+.... .+.+.+++.||+||.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 9999999999886543 467899999999999986
No 64
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=1.9e-15 Score=107.26 Aligned_cols=106 Identities=22% Similarity=0.264 Sum_probs=77.5
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECC---
Q 029044 83 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 158 (200)
Q Consensus 83 v~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d--- 158 (200)
+.|.|+|++++++||+++||+++....+ ..+++.. ++..+.++....... .+....+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP------TFALFVLGSGVKLGLWSRHTVEP---ASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC------ceEEEEeCCCcEEEEeeccccCC---CCCCCCCceEEEEEcCCHHH
Confidence 6789999999999999999999876432 1233444 455677766443221 11122345799999985
Q ss_pred HHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeEEEEE
Q 029044 159 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~iEl~e 197 (200)
+++++++++++|+++...+ ..++.++|+|||||+|||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 8899999999999986542 33468999999999999973
No 65
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1.8e-15 Score=107.34 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=71.6
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEEecCCCCCCCCCCCCCCceeEEEE--E
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI--A 155 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f--~ 155 (200)
+|+||.|.|.|++++.+||+ .|||++....+ . .++.. ++....+...... .....|++| .
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 64 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD------G-LELRTAGNDHRWARLLEGA---------RKRLAYLSFGIF 64 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------c-eEEEecCCCceEEEeecCC---------CCceeeEEEEeE
Confidence 68999999999999999997 69999975432 1 23333 3232222111111 112345444 4
Q ss_pred ECCHHHHHHHHHHCCCeEEecC--CCceEEEEECCCCCeEEEEEe
Q 029044 156 IRDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 156 v~dv~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdGn~iEl~e~ 198 (200)
++|+++++++++++|+++...+ .+.+.+||.|||||.|||...
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEecC
Confidence 5799999999999999986542 345689999999999999853
No 66
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.68 E-value=2.4e-15 Score=106.42 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=74.6
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC---eEEEEEecCCCCCCCCCCCCCCceeEEEEEECCH
Q 029044 83 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA---EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 159 (200)
Q Consensus 83 v~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~---~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv 159 (200)
..|.|+|++++++||+++|||+.....+ ...++..++ ..+.+....... ....|++|.|+|+
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~v~d~ 68 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDHG------WIATFASPQNMTVQVSLATEGGTA---------TVVPDLSIEVDDV 68 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcCC------ceEEEeecCCCCcEEEEecCCCCC---------CCCCEEEEEeCCH
Confidence 4688999999999999999999864321 233344332 234444322111 1236999999999
Q ss_pred HHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEEe
Q 029044 160 SKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 160 ~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
++++++++++|+++..++ +|.+.+||.|||||.|||++.
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 69 DAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 999999999999986542 456889999999999999975
No 67
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=1.6e-15 Score=112.46 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=77.7
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe-EEEEEecCCCCCCCCCCCCCCceeEEEEEECC-
Q 029044 81 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD- 158 (200)
Q Consensus 81 ~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d- 158 (200)
+||.|.|+|++++++||+++|||++...... ..+|+...+. ..+.+... +...++++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~--------~~~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVG--------PASSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeec--------cCCCCceEEEEEECCCH
Confidence 5899999999999999999999998765321 4577765432 22333211 1123578999999985
Q ss_pred --HHHHHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEE
Q 029044 159 --VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 159 --v~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e 197 (200)
+++++++|+++|+++...+ .+.+.+||+||||+.|||..
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 4677999999999886432 34578999999999999975
No 68
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=2.2e-15 Score=108.28 Aligned_cols=107 Identities=23% Similarity=0.319 Sum_probs=75.7
Q ss_pred EeEEEEEcCCHHHHHHHHHhc---cCCEEeeecCCCCCCceEEEEEeC--CeEEEEEecCCCCCCCCCCCCCCceeEEEE
Q 029044 80 VHHVGILCENLERSLEFYQNI---LGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 154 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 154 (200)
++||.|.|+|++++++||+++ ||++.....+ . ...++..+ +..+.+....... +....+..|++|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~hi~f 70 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGPDFWVTKPFDGE-----PATAGNGTHVAF 70 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCceEEEeccccCC-----CCCCCCceEEEE
Confidence 579999999999999999998 6999875541 1 11233333 3456665432211 111223479999
Q ss_pred EECC---HHHHHHHHHHCCCeEEecC-------CCceEEEEECCCCCeEEEE
Q 029044 155 AIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 155 ~v~d---v~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdGn~iEl~ 196 (200)
.|++ +++++++++++|+.+..++ .+.+.+||+|||||.|||+
T Consensus 71 ~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 71 AAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 9986 7889999999999876442 2345789999999999997
No 69
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.67 E-value=1.9e-15 Score=125.19 Aligned_cols=115 Identities=21% Similarity=0.325 Sum_probs=81.9
Q ss_pred CCceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCc-eEEEEEeCCeE--EEEEecCCCCCCCCCCCCCCce
Q 029044 73 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY-RGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRD 149 (200)
Q Consensus 73 ~~~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~g~~~--~~l~~~~~~~~~~~~~~~~~~~ 149 (200)
..+.+.+++||.|.|+|++++++||+++|||++........... ...|+..++.. +.+... + ..+..
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~g~~ 208 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVGD---------P-EPGKL 208 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceecC---------C-CCCce
Confidence 44668899999999999999999999999999875432222211 34566554321 211110 1 11347
Q ss_pred eEEEEEECC---HHHHHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEE
Q 029044 150 RHTCIAIRD---VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 150 ~hi~f~v~d---v~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e 197 (200)
+|+||.|+| +++++++|+++|+++..++ .+.+.+||+|||||+||+.+
T Consensus 209 ~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 209 HHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 899999986 5567889999999986543 13578999999999999983
No 70
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=6.4e-15 Score=105.09 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=78.8
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCC--CCCCceeEEEEEE---C
Q 029044 83 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP--EHGGRDRHTCIAI---R 157 (200)
Q Consensus 83 v~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~--~~~~~~~hi~f~v---~ 157 (200)
|.|.|+|++++.+||+++|||++..+.. ....++..++..++++..+........+ ..+.+..|++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-----DGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-----CceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 7899999999999999999999876511 1345677777778777644221111111 1222334566665 5
Q ss_pred CHHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEE
Q 029044 158 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e 197 (200)
|++++++++++.|+++...+ +|++.++++|||||+|||..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 89999999999999986432 35789999999999999975
No 71
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.64 E-value=8e-15 Score=120.90 Aligned_cols=114 Identities=27% Similarity=0.427 Sum_probs=81.3
Q ss_pred CCceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe--EEEEEecCCCCCCCCCCCCCCcee
Q 029044 73 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDR 150 (200)
Q Consensus 73 ~~~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~ 150 (200)
..+.+++++||.|.|+|++++++||+++|||++..............|+..++. .+.+.. ..+.+++
T Consensus 130 ~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 198 (294)
T TIGR02295 130 RGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALTN-----------GNGPRLH 198 (294)
T ss_pred CCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEeec-----------CCCCcee
Confidence 345788999999999999999999999999998765432222233456654332 122211 1124679
Q ss_pred EEEEEECC---HHHHHHHHHHCCCe--EEecC-----CCceEEEEECCCCCeEEEEE
Q 029044 151 HTCIAIRD---VSKLKMILDKAGIS--YTLSK-----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 151 hi~f~v~d---v~~~~~~l~~~G~~--~~~~~-----~g~~~~~~~DPdGn~iEl~e 197 (200)
|+||.|+| +++++++|+++|++ +...+ .+...+|++|||||+||+++
T Consensus 199 Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~ 255 (294)
T TIGR02295 199 HIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYT 255 (294)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEe
Confidence 99999997 55678999999987 43322 12357999999999999986
No 72
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.64 E-value=6.3e-15 Score=121.28 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=80.3
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
|.+++||.|.|+|+++|++||+++|||+....... ...|+..++....+...+... .++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGEN-----DALYLRLDSRAHRIAVHPGES---------DDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCCC-----ceEEEEcCCCceEEEEEECCc---------CCeeeEeeee
Confidence 46899999999999999999999999997653221 234667764333332222211 2357899999
Q ss_pred CC---HHHHHHHHHHCCCeEEecC-------CCceEEEEECCCCCeEEEEE
Q 029044 157 RD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 157 ~d---v~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdGn~iEl~e 197 (200)
++ ++++.++|+++|+++...+ .+.+.++|.|||||.|||..
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~ 117 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYY 117 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEE
Confidence 97 8899999999999986532 34578999999999999986
No 73
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=7.2e-15 Score=107.74 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=82.3
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCC-C---CCCCCC-ceeEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS-G---RPEHGG-RDRHT 152 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~-~---~~~~~~-~~~hi 152 (200)
.++.|+.|.+++.-+...||...||++.....+.+..... +|+......++|...-+.+.+. . .....+ +++||
T Consensus 41 tr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHI 119 (170)
T KOG2944|consen 41 TRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHI 119 (170)
T ss_pred hhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecccCceeeecCCCCCCCcchhhcCCCCCCCccceE
Confidence 3455566666666666666666666665544444333322 7777777778887655443332 1 122223 77999
Q ss_pred EEEECCHHHHHHHHHHCCCeEEecCCCc---eEEEEECCCCCeEEEEEe
Q 029044 153 CIAIRDVSKLKMILDKAGISYTLSKSGR---PAIFTRDPDANALEFTQV 198 (200)
Q Consensus 153 ~f~v~dv~~~~~~l~~~G~~~~~~~~g~---~~~~~~DPdGn~iEl~e~ 198 (200)
||.|+|+++++++|+++|+++......+ ..+|+.|||||.|||.-.
T Consensus 120 ci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 120 CIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred EEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 9999999999999999999987765433 569999999999999753
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.62 E-value=2e-14 Score=118.31 Aligned_cols=112 Identities=15% Similarity=0.245 Sum_probs=80.4
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCC--CCC-CceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPH--DKL-PYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 153 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~--~~~-~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 153 (200)
+.+|+||.|.|+|++++.+||+++|||++...... +.. .+..+|+..++....+...... ...+++|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~--------~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGP--------SEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCC--------CCCceEEEE
Confidence 57999999999999999999999999998754221 111 1245778776443222211111 124578999
Q ss_pred EEECCHHH---HHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEE
Q 029044 154 IAIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 154 f~v~dv~~---~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e 197 (200)
|.|+|.++ ++++|+++|+ ....+ .+...+||+|||||+||+..
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99997666 7999999999 43321 34678999999999999975
No 75
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.61 E-value=1.8e-14 Score=119.39 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=79.4
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CC-eEEEEEecCCCCCCCCCCCCCCceeEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GA-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 154 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 154 (200)
|++++||.|.|+|++++++||+++|||++..+.+. .+++.. ++ ....+..... ...++.|++|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~---------~~~g~~hiaf 66 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA---------DTAGLDHMAF 66 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC---------CCCceeEEEE
Confidence 67899999999999999999999999999765431 234443 21 1111211111 1135789999
Q ss_pred EEC---CHHHHHHHHHHCCCeEEecC-----CCceEEEEECCCCCeEEEEEe
Q 029044 155 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 155 ~v~---dv~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdGn~iEl~e~ 198 (200)
.|+ |+++++++|+++|+++...+ ..++.+||+|||||.|||.+.
T Consensus 67 ~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~ 118 (303)
T TIGR03211 67 KVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAE 118 (303)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEc
Confidence 998 78999999999999986532 245789999999999999974
No 76
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.61 E-value=1.7e-14 Score=118.86 Aligned_cols=108 Identities=21% Similarity=0.283 Sum_probs=80.6
Q ss_pred eeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC--eEEEEEecCCCCCCCCCCCCCCceeEEE
Q 029044 76 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTC 153 (200)
Q Consensus 76 ~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 153 (200)
+|.+++||.|.|+|++++++||+++|||++..+.+ ..+|+.... ....+...... ..+..|++
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~---------~~~~~hia 65 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKAP---------SAALSYIG 65 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeCC---------CcCccEEE
Confidence 36789999999999999999999999999976543 234554321 11222211111 12468999
Q ss_pred EEEC---CHHHHHHHHHHCCCeEEecC--CCceEEEEECCCCCeEEEEEe
Q 029044 154 IAIR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 154 f~v~---dv~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdGn~iEl~e~ 198 (200)
|.|+ |+++++++|+++|+++.... .+.+.+||+|||||.|||++.
T Consensus 66 f~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 66 FRVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred EEeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 9997 78999999999999986543 346899999999999999863
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.56 E-value=1e-13 Score=114.27 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=87.3
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC----eEEEEEecCCCCCCCCCCCCCCceeEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHT 152 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~~~l~~~~~~~~~~~~~~~~~~~~hi 152 (200)
...+.|+.|.|+|++++.+||+++|||++......+...+...++..++ ..+++....+. ..+..+.+..|+
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~----~~~~~g~~~~~i 227 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV----TEYTKGNAYAQI 227 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC----CccccCCceeEE
Confidence 4478899999999999999999999999986544333445556665432 13444321111 112234567899
Q ss_pred EEEECCHHHHHHHHHHCCCeEEecC---CC--ceEEEEECCCCCeEEEEEeC
Q 029044 153 CIAIRDVSKLKMILDKAGISYTLSK---SG--RPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 153 ~f~v~dv~~~~~~l~~~G~~~~~~~---~g--~~~~~~~DPdGn~iEl~e~~ 199 (200)
+|.|+|+++++++++++|+++...+ ++ .+.++|+|||||.++|++..
T Consensus 228 ~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 228 AIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred EEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 9999999999999999999987642 22 37899999999999999854
No 78
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.55 E-value=4.7e-14 Score=99.88 Aligned_cols=94 Identities=26% Similarity=0.393 Sum_probs=77.3
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC--eEEEEEecCCCCCCCCCCCCCCceeEEEEEECC
Q 029044 81 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 158 (200)
Q Consensus 81 ~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 158 (200)
+||+|.|+|++++++||+++||++.......+....+.+|+..++ ..++|++..+.... ....+.+++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~--~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSP--LDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCH--HHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcc--cccCCCCEEEEEEEeCC
Confidence 699999999999999999999999877666556667888999987 58999986665411 12367789999999999
Q ss_pred HHHHHHHHHHCCCeEEec
Q 029044 159 VSKLKMILDKAGISYTLS 176 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~~~ 176 (200)
++++.++|+++|+++...
T Consensus 79 ~d~~~~~l~~~G~~~~~~ 96 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDE 96 (109)
T ss_dssp HHHHHHHHHHTTECEEEC
T ss_pred HHHHHHHHHHCCCEEccc
Confidence 999999999999998553
No 79
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.44 E-value=3.5e-12 Score=101.70 Aligned_cols=112 Identities=24% Similarity=0.365 Sum_probs=88.8
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCe-EEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
+.++.|.|.|+|++++..||+++||+++..+.. ..+-+..|+. -+.|.+.++...+. ....++.|++|.+
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~~LL~L~q~~~a~~~~---~~~aGLyH~AfLl 79 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGTPLLTLEQFPDARRPP---PRAAGLYHTAFLL 79 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCEEEEEEEeCCCCCCCC---ccccceeeeeeec
Confidence 468999999999999999999999999998765 3355777877 56666666554321 2445789999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec--CCCceEEEEECCCCCeEEEEEe
Q 029044 157 R---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 157 ~---dv~~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+ |+..+..++.+.|+.+... .....++||.||+||-||+...
T Consensus 80 P~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaD 126 (265)
T COG2514 80 PTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYAD 126 (265)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEec
Confidence 8 6778888999999998632 2346789999999999999864
No 80
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.42 E-value=6.7e-12 Score=90.48 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=80.6
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC-e-EEEEEecCCCCCCCCCCCCCCceeEEEEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-E-MIHLMELPNPDPLSGRPEHGGRDRHTCIA 155 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~-~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 155 (200)
..+.|..|+++|++++++||+++|||+......... .....+..++ . .-.+...+... +. +....+.|.
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~~~~~~-----p~--~~~~~iy~~ 78 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMARPGSP-----PG--GGGWVIYFA 78 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceeccCCcCC-----CC--CCCEEEEEe
Confidence 458899999999999999999999999986543322 2333333332 1 11121111111 11 223578889
Q ss_pred ECCHHHHHHHHHHCCCeEEecC----CCceEEEEECCCCCeEEEEEeC
Q 029044 156 IRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 156 v~dv~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|+|+++..++++++|.++...+ .+++.+.+.||+||+|.|+++.
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 9999999999999999987653 4789999999999999999865
No 81
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.33 E-value=2.1e-11 Score=86.29 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=83.4
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCC---CCCCCCCceeEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS---GRPEHGGRDRHTCIA 155 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~---~~~~~~~~~~hi~f~ 155 (200)
++-.|+|.|+|++++.+||+. ||++.......+. ..+.+..+...+.|........-. -.......-.-+|+.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls 78 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLS 78 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEec
Confidence 466799999999999999998 9999987665433 234455566677776644332111 011122233468888
Q ss_pred EC---CHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeEEEEEeCC
Q 029044 156 IR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVDG 200 (200)
Q Consensus 156 v~---dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~iEl~e~~~ 200 (200)
+. +++++.++..++|++...++ ...++..|.|||||.||+...+|
T Consensus 79 ~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 79 AGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred cCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 76 78999999999999884443 34578899999999999998764
No 82
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.30 E-value=2.3e-11 Score=94.61 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=70.9
Q ss_pred ceEeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCC--CCceEEEEEeC--CeEEEEEecCCCCCCCC-----CCCCC
Q 029044 78 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWVG--AEMIHLMELPNPDPLSG-----RPEHG 146 (200)
Q Consensus 78 ~~l~hv~l~v~--Dl~~s~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g--~~~~~l~~~~~~~~~~~-----~~~~~ 146 (200)
.+++||++.|+ |++++++||+++|||+......... .+.....+..+ +..+.|.+......... ....+
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 57999999999 9999999999999999987654332 22333445553 34666765443211100 01235
Q ss_pred CceeEEEEEECCHHHHHHHHHHCCCeEEe
Q 029044 147 GRDRHTCIAIRDVSKLKMILDKAGISYTL 175 (200)
Q Consensus 147 ~~~~hi~f~v~dv~~~~~~l~~~G~~~~~ 175 (200)
.+++||||.|+|+++++++|+++|+++..
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~ 110 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLP 110 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeecc
Confidence 78899999999999999999999999843
No 83
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.1e-11 Score=96.87 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=90.6
Q ss_pred CceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC-----------CCceEEEEEeCCeEEEEEecCCCCCCCCC
Q 029044 74 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVGAEMIHLMELPNPDPLSGR 142 (200)
Q Consensus 74 ~~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~l~~~~~~~~~~~~ 142 (200)
..+-.++-|+++.|.|.+++++||+++|||++....+.++ ....-.++..|...-||+.--...-....
T Consensus 12 ~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~ 91 (299)
T KOG2943|consen 12 KADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSK 91 (299)
T ss_pred hccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccc
Confidence 3445679999999999999999999999999998776655 23333557777665555433333333456
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEEE
Q 029044 143 PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 143 ~~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~e 197 (200)
.+-|+++.||.+.++|+-...+.++..|.+ ..|.-.+++.||||+.|++.+
T Consensus 92 YelGndfg~i~I~s~dv~~~ve~v~~p~~~----~~g~~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 92 YELGNDFGGITIASDDVFSKVEKVNAPGGK----GSGCGIAFVKDPDGYKFYLID 142 (299)
T ss_pred eeccCCcccEEEeHHHHHHHHHHhcCcCCc----ccceEEEEEECCCCcEEEEec
Confidence 778888999999999999888888877652 234557899999999999985
No 84
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=81.32 Aligned_cols=110 Identities=27% Similarity=0.485 Sum_probs=74.1
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC--CeEEEEEecCCCCCC-CCC-CCCCCceeEEEE-
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPL-SGR-PEHGGRDRHTCI- 154 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g--~~~~~l~~~~~~~~~-~~~-~~~~~~~~hi~f- 154 (200)
+=|+.|.|+|++++++||.++||.+.....+ .|+..+ +.++.....+..+.. .++ ..++--..|++.
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvV 76 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVV 76 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEE
Confidence 4589999999999999999999999876443 343332 334333333332211 111 112222346655
Q ss_pred -EECCHHHHHHHHHHCCCeEEecC--------CCceEEEEECCCCCeEEEEE
Q 029044 155 -AIRDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 155 -~v~dv~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DPdGn~iEl~e 197 (200)
.++|--++.++|+++|+.+...+ ...+.+|+.||.||.+|+-.
T Consensus 77 l~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 77 LPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 45588899999999999874432 34688999999999999865
No 85
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.23 E-value=6.6e-10 Score=80.76 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=76.4
Q ss_pred EEEEc-CCHHHHHHHHHhccCCEEeeecCCC----------CCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeE
Q 029044 83 VGILC-ENLERSLEFYQNILGLEINEARPHD----------KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 151 (200)
Q Consensus 83 v~l~v-~Dl~~s~~FY~~vLG~~~~~~~~~~----------~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~h 151 (200)
..|.+ .|.+++++||+++||+++......+ ......+.+.+++..+.+......... ..+...+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~-----~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF-----TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC-----CCCCCEE
Confidence 35667 9999999999999999998755321 122234567888888877764432211 1123357
Q ss_pred EEEEECC---HHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEE
Q 029044 152 TCIAIRD---VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 152 i~f~v~d---v~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~ 196 (200)
+++.|+| +++++++|.+.| ++... .+|.+..+++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 8999885 778889987776 55432 36778999999999999973
No 86
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.15 E-value=1.2e-10 Score=82.76 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=72.7
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCc---eEEEEEeCCeEEEEEecC--------CCCCCCCCCCCC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY---RGAWLWVGAEMIHLMELP--------NPDPLSGRPEHG 146 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~---~~~~l~~g~~~~~l~~~~--------~~~~~~~~~~~~ 146 (200)
++++||.|.|+|++++++||+++||++............ ...+.............. ............
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 368999999999999999999999999998665433221 111111111000110000 000000001111
Q ss_pred --CceeEEEEEECC---HHHHHHHHHHCCCeEEecC--CCceEEEEECCCCCeEEEEE
Q 029044 147 --GRDRHTCIAIRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 147 --~~~~hi~f~v~d---v~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdGn~iEl~e 197 (200)
.+..|+++.+.+ ..+........|..+.... .....+||+||||+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 235799999997 6666777777788764432 22238999999999999974
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.10 E-value=4.9e-10 Score=95.03 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=73.7
Q ss_pred CCCceeceEeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCC--CCceEEEEEe--CCeEEEEEecCCCCCCCC----
Q 029044 72 KIDYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWV--GAEMIHLMELPNPDPLSG---- 141 (200)
Q Consensus 72 ~~~~~i~~l~hv~l~v~--Dl~~s~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~--g~~~~~l~~~~~~~~~~~---- 141 (200)
.+.+.+.+++||++.|+ |+++++.||+++|||+......... ......++.. |+..++|.+.........
T Consensus 151 ~~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~f 230 (353)
T TIGR01263 151 PPGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEF 230 (353)
T ss_pred CCCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHH
Confidence 35677999999999999 9999999999999999986544221 1111122332 345777776422211111
Q ss_pred -CCCCCCceeEEEEEECCHHHHHHHHHHCCCeEEe
Q 029044 142 -RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTL 175 (200)
Q Consensus 142 -~~~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~ 175 (200)
....+.+++||||.|+|+++++++|+++|+++..
T Consensus 231 l~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~ 265 (353)
T TIGR01263 231 LEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLD 265 (353)
T ss_pred HHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCc
Confidence 1123678899999999999999999999998854
No 88
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=1.1e-08 Score=74.92 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=83.6
Q ss_pred EEEcC-CHHHHHHHHHhccCCEEeeecCCCC----------CCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEE
Q 029044 84 GILCE-NLERSLEFYQNILGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 152 (200)
Q Consensus 84 ~l~v~-Dl~~s~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi 152 (200)
.|..+ |.+++++||+++||.+.....+..+ ...-.+-|.+++..+.+........ ....++...-|
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~---~~~~~~~s~~l 81 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG---ATEGGGTSLSL 81 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC---cccCCCeeEEE
Confidence 46677 9999999999999999987665544 3344466888888777765333222 11112222467
Q ss_pred EEEECCHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEEeC
Q 029044 153 CIAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 153 ~f~v~dv~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
.+.++|++++++++.+.|+++... .+|.+...++||.|+.|-|....
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCc
Confidence 778889999999999999888654 36889999999999999998653
No 89
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.06 E-value=4.2e-09 Score=89.38 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=71.8
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCC--CCCCCCceeEEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 156 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~f~v 156 (200)
+++||.|+|+|++++++||.+.|||+........... ....+..|+..+.|........... ...++.+..|++|.|
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V 80 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRV 80 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEE
Confidence 6899999999999999999999999998762211111 2333566777888876544321111 123667889999999
Q ss_pred CCHHHHHHHHHHCCCeEEe
Q 029044 157 RDVSKLKMILDKAGISYTL 175 (200)
Q Consensus 157 ~dv~~~~~~l~~~G~~~~~ 175 (200)
+|+++++++++++|+++..
T Consensus 81 ~Dv~~a~~~l~~~Ga~~v~ 99 (353)
T TIGR01263 81 DDAAAAFEAAVERGAEPVQ 99 (353)
T ss_pred CCHHHHHHHHHHCCCEecc
Confidence 9999999999999998844
No 90
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.89 E-value=1.3e-08 Score=84.57 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=71.0
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 157 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~ 157 (200)
.++-||+|.|+|+++|++||+.+|++.. +..+ . ..-+ ++..+.+..... + ... ..-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde--~----a~cm--~dtI~vMllt~~-D----~~~--~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD--K----LFLL--GKTSLYLQQTKA-E----KKN--RGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC--c----cccc--cCcEEEEEecCC-C----CCC--cceEEEEeccC
Confidence 3577999999999999999999988875 3222 1 1112 444444443332 1 111 12245888887
Q ss_pred ---CHHHHHHHHHHCCCeEEecC--CCceEEEEECCCCCeEEEEEe
Q 029044 158 ---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 158 ---dv~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+++++.++..++|++..... .|. .--|.|||||.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf-~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP-LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC-cceeECCCCCEEEEEEE
Confidence 78999999999999663332 345 78899999999999863
No 91
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.86 E-value=1.3e-08 Score=87.03 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred CceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC-----CCceEEEEEeCC--eEEEEEecCCC---CCCCC--
Q 029044 74 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----LPYRGAWLWVGA--EMIHLMELPNP---DPLSG-- 141 (200)
Q Consensus 74 ~~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~-----~~~~~~~l~~g~--~~~~l~~~~~~---~~~~~-- 141 (200)
+..+.+++||++.|++++.++.||+++|||+..+...... .+.+...+..++ ..+.|.+.... .....
T Consensus 175 ~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eF 254 (398)
T PLN02875 175 DYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTY 254 (398)
T ss_pred CCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHH
Confidence 3457899999999999999999999999999886544322 123455566654 56777775421 11111
Q ss_pred -CCCCCCceeEEEEEECCHHHHHHHHHHC----CCeEEe
Q 029044 142 -RPEHGGRDRHTCIAIRDVSKLKMILDKA----GISYTL 175 (200)
Q Consensus 142 -~~~~~~~~~hi~f~v~dv~~~~~~l~~~----G~~~~~ 175 (200)
....|.|++||||.++|+.++.++|+++ |+++..
T Consensus 255 L~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 255 LEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred HHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCC
Confidence 1234578999999999999999999999 998854
No 92
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=3.6e-08 Score=77.44 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=74.4
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC-
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 157 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~- 157 (200)
.+-.|.|.|.|++++++||+++|||++..... .+..+.|..++.+..|-.....+.- .... +...++|.++
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekee----k~t~~~mgYgd~q~~LElt~~~~~i--d~~k--g~griafaip~ 220 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEE----KYTRARMGYGDEQCVLELTYNYDVI--DRAK--GFGRIAFAIPT 220 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhh----hhhhhhhccCCcceEEEEEeccCcc--cccc--cceeEEEeccc
Confidence 37789999999999999999999999997532 2334557777665444332222211 1122 2345666665
Q ss_pred -CHHHHHHHHHHCCCeE----Ee-cCC---CceEEEEECCCCCeEEEEE
Q 029044 158 -DVSKLKMILDKAGISY----TL-SKS---GRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 158 -dv~~~~~~l~~~G~~~----~~-~~~---g~~~~~~~DPdGn~iEl~e 197 (200)
++..+.+.++..+.++ +. ..+ +...+.+.||||+.|.|+.
T Consensus 221 d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVd 269 (299)
T KOG2943|consen 221 DDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVD 269 (299)
T ss_pred cccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEec
Confidence 7888888888775554 22 222 3467889999999999985
No 93
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.72 E-value=1.1e-07 Score=76.22 Aligned_cols=97 Identities=23% Similarity=0.294 Sum_probs=67.6
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEe--cCCCCCCCCCCCCCCceeEEEE
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLME--LPNPDPLSGRPEHGGRDRHTCI 154 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~--~~~~~~~~~~~~~~~~~~hi~f 154 (200)
-+.|+||.|.|.|++++.+||+++|||+...+.+ ...|+..|+.+.|+.. ...... ........++..+.+
T Consensus 166 ~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~-~~~~~~~~GLa~~~i 238 (265)
T COG2514 166 GTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGA-RPRNANASGLAWLEI 238 (265)
T ss_pred CcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCC-CCCCCCCCCcceEEE
Confidence 4679999999999999999999999999998733 4478999998766653 233222 122234456677888
Q ss_pred EECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEE
Q 029044 155 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 155 ~v~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~ 196 (200)
.+++-..+....... .||+|+.|+++
T Consensus 239 ~~~~~~~l~~~~~~~----------------~Dp~G~~i~~~ 264 (265)
T COG2514 239 HTPDPEKLDATGTRL----------------TDPWGIVIRVV 264 (265)
T ss_pred EcCCcccccccccce----------------ecCCCceEEEe
Confidence 877643332211111 89999999875
No 94
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.62 E-value=1e-07 Score=72.99 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=59.5
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCC--CC------CCCCCceeE
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS--GR------PEHGGRDRH 151 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~--~~------~~~~~~~~h 151 (200)
|+|+.+.|+|++++.++|++.|||.+.........+.....+..++..++|+...+..... +. ...+.+..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999998889999998776666667777777788899999865432221 11 124677889
Q ss_pred EEEEECCHHHHHHHHHHCCCe
Q 029044 152 TCIAIRDVSKLKMILDKAGIS 172 (200)
Q Consensus 152 i~f~v~dv~~~~~~l~~~G~~ 172 (200)
+|+.++|+++..++++++|+.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999985
No 95
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.40 E-value=3.7e-05 Score=54.48 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=64.2
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC--CeEEEEEecCCCCCCCCCCCCCCceeEEEEEECC
Q 029044 81 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 158 (200)
Q Consensus 81 ~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 158 (200)
.+-.|+|.|-+..++||++.|||++..+.. ..++|... ...+.+-+.|....... +..-.+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V--~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAV--EGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B----SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccc--cCcceeeEEEEEcCC
Confidence 456899999999999999999999998765 33555443 23666666666542111 111135789999987
Q ss_pred HHHHHHHHHHCCCeEE--ecCCCceEEEEECCCCCeEEEEEeC
Q 029044 159 VSKLKMILDKAGISYT--LSKSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~--~~~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
-+++-+ |.++|.++. .....++++-..+|+|+.|.+...+
T Consensus 74 ~~EIe~-LLar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 74 PKEIEA-LLARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHHHH-HHHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHHHH-HHhcccccceeEEcCCceEEEEECCCCCEEEEEEcC
Confidence 766644 444555442 2334577888999999999998543
No 96
>PRK10148 hypothetical protein; Provisional
Probab=98.35 E-value=6.1e-05 Score=56.15 Aligned_cols=109 Identities=14% Similarity=0.030 Sum_probs=71.9
Q ss_pred EEEEc-CCHHHHHHHHHhccCCEEeeecC-----C---------------CCCCceEEEEEeCCeEEEEEecCCCCCCCC
Q 029044 83 VGILC-ENLERSLEFYQNILGLEINEARP-----H---------------DKLPYRGAWLWVGAEMIHLMELPNPDPLSG 141 (200)
Q Consensus 83 v~l~v-~Dl~~s~~FY~~vLG~~~~~~~~-----~---------------~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~ 141 (200)
..|.. .|.+++++||+++||.++..... . .....-.+.|.+++..+.+.......
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~---- 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG---- 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc----
Confidence 34555 48999999999999999864321 0 11223346678888766665422111
Q ss_pred CCCCCCceeEEEEEECCHHH---HHHHHHHCCCeEEec----CCCceEEEEECCCCCeEEEEEe
Q 029044 142 RPEHGGRDRHTCIAIRDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 142 ~~~~~~~~~hi~f~v~dv~~---~~~~l~~~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+..+. ..++++.++|.++ +++.| +.|.++... .++.+...++||.|+.|.|...
T Consensus 81 -~~~~~-~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 -KAHYS-GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred -CCCCC-eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 11112 3578888888776 56666 577777543 3567889999999999999764
No 97
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.32 E-value=4.6e-06 Score=61.37 Aligned_cols=120 Identities=11% Similarity=0.034 Sum_probs=77.3
Q ss_pred CCceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEE
Q 029044 73 IDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 152 (200)
Q Consensus 73 ~~~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi 152 (200)
+++.+.++.+|.+.++|.+++..|++ .|||+.+...... ....++-|+..+.|...++.........+|.+..-+
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 46789999999999999877777775 5999999754321 233456688777776633321111123467788899
Q ss_pred EEEECCHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeEEEEE
Q 029044 153 CIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 153 ~f~v~dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~iEl~e 197 (200)
+|.|+|.++++++..++|.+....+ .....--++-++|.++-|++
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVd 125 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVD 125 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEe
Confidence 9999999999999999999774432 12233455666666666665
No 98
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.28 E-value=2.9e-06 Score=69.38 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=70.8
Q ss_pred ceeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCc--eEEEEEeCCeEEEEEecCCCCCC-C--CCCCCCCce
Q 029044 75 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY--RGAWLWVGAEMIHLMELPNPDPL-S--GRPEHGGRD 149 (200)
Q Consensus 75 ~~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~--~~~~l~~g~~~~~l~~~~~~~~~-~--~~~~~~~~~ 149 (200)
..+.+++||.+.|.|.+.+..||+..|||++....+.+.... .-.-++.|...+.+...-++... - ....++.+.
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccch
Confidence 347799999999999999999999999999986443211100 00113334444444443333221 1 235577778
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeEEec
Q 029044 150 RHTCIAIRDVSKLKMILDKAGISYTLS 176 (200)
Q Consensus 150 ~hi~f~v~dv~~~~~~l~~~G~~~~~~ 176 (200)
.-+||+|+|.+++.+.+.++|+++...
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~ 119 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRP 119 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCC
Confidence 899999999999999999999998654
No 99
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.25 E-value=3e-05 Score=66.59 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=79.2
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCC--CCceEEEEEeCCeEEEEEecCCCC--C----------CC---C-
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWVGAEMIHLMELPNPD--P----------LS---G- 141 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~l~~~~~~~--~----------~~---~- 141 (200)
++||.++|.|.+.+..||+..|||+.+....... .......++.|+..+.|.....+. . .. .
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 5899999999999999999999999987554211 112234456677676666552221 0 00 0
Q ss_pred -----CCCCCCceeEEEEEECCHHHHHHHHHHCCCeEEecCC-------C--ceEEEEECCCCCeEEEEE
Q 029044 142 -----RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS-------G--RPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 142 -----~~~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~~~~-------g--~~~~~~~DPdGn~iEl~e 197 (200)
...++.++.-++|+|+|++++++++.++|.+....+. + ....-+.-++|..+-|++
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVd 150 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVS 150 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEc
Confidence 1246778889999999999999999999998744321 1 122335556666666665
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.92 E-value=2e-05 Score=65.53 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=70.7
Q ss_pred CCceeceEeEEEEEc--CCHHHHHHHHHhccCCEEeeecCCCC--CCceEEEEEeC--CeEEEEEecCCCCCCCC---CC
Q 029044 73 IDYGVVSVHHVGILC--ENLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWVG--AEMIHLMELPNPDPLSG---RP 143 (200)
Q Consensus 73 ~~~~i~~l~hv~l~v--~Dl~~s~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g--~~~~~l~~~~~~~~~~~---~~ 143 (200)
....+..++|+...| ..++.+..||+++|||+.....+.+. ...+..-|... ...+-|-...+.....+ ..
T Consensus 161 ~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 161 GGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred cccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHH
Confidence 344567899998886 89999999999999999986544322 22222223333 33444444333322111 12
Q ss_pred CCCCceeEEEEEECCHHHHHHHHHHCCCeEEe
Q 029044 144 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTL 175 (200)
Q Consensus 144 ~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~ 175 (200)
-+|.|++||+|.++|+-++.++++++|+++..
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ 272 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAALRERGVKFLP 272 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHHHHcCCccCC
Confidence 36778999999999999999999999999843
No 101
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.22 E-value=0.014 Score=41.71 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHhccCCEEee---ecCC----CCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEECCH
Q 029044 87 CENLERSLEFYQNILGLEINE---ARPH----DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 159 (200)
Q Consensus 87 v~Dl~~s~~FY~~vLG~~~~~---~~~~----~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~dv 159 (200)
-.+.+++.+||.++||-..+. ..+. .....-.+.|.+++..+.+....... ..+.+ ..+++.++|.
T Consensus 10 ~g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~~------~~~~~-~sl~i~~~~~ 82 (116)
T PF06983_consen 10 NGNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPDF------PFGNN-ISLCIECDDE 82 (116)
T ss_dssp SS-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS----------TT-EEEEEEESSH
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCCC------CCCCc-EEEEEEcCCH
Confidence 379999999999999953322 1111 11223345688888887776654111 11222 5788888865
Q ss_pred ---HHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEE
Q 029044 160 ---SKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 160 ---~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~ 196 (200)
++++++|.+.|- +......+.|--|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG~------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGGQ------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTTE------TCCEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCCC------ccceeEEEEeCCCCEEEeC
Confidence 455777777775 3337889999999999885
No 102
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0003 Score=57.84 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=70.1
Q ss_pred CCCceeceEeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCCCceE-----EEEEeCCeEEEEEecCCCCCCCC---
Q 029044 72 KIDYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRG-----AWLWVGAEMIHLMELPNPDPLSG--- 141 (200)
Q Consensus 72 ~~~~~i~~l~hv~l~v~--Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~-----~~l~~g~~~~~l~~~~~~~~~~~--- 141 (200)
-+.+.+..++|++..++ .++.+.+||.+.|||...+..+....+... .-+...+..+.+...........
T Consensus 171 l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQ 250 (381)
T KOG0638|consen 171 LPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQ 250 (381)
T ss_pred CCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHH
Confidence 34578899999999998 788999999999999998876643322111 01222233333222111111111
Q ss_pred -----CCCCCCceeEEEEEECCHHHHHHHHHHCCCeEEe
Q 029044 142 -----RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTL 175 (200)
Q Consensus 142 -----~~~~~~~~~hi~f~v~dv~~~~~~l~~~G~~~~~ 175 (200)
....|.|++||++.++|+-++.+.|+++|.++..
T Consensus 251 Iqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs 289 (381)
T KOG0638|consen 251 IQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLS 289 (381)
T ss_pred HHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCcccc
Confidence 1235678999999999999999999999999853
No 103
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.02 E-value=0.0096 Score=49.87 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=75.6
Q ss_pred CCceeceEeEEEEEcCCH-HHHHHHHHhccCCEEeeecCCCCCCceEEEE-EeCCeEEEEEecCCCCCCCCCCCCCCcee
Q 029044 73 IDYGVVSVHHVGILCENL-ERSLEFYQNILGLEINEARPHDKLPYRGAWL-WVGAEMIHLMELPNPDPLSGRPEHGGRDR 150 (200)
Q Consensus 73 ~~~~i~~l~hv~l~v~Dl-~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (200)
.++...++.+|.+.|.|. ++...++.. |||....+-.. ..+.+ +-|+..+.+...+..........++....
T Consensus 16 ~P~~~~GfeFvEf~~~d~~~~l~~l~~~-lGF~~~~~Hrs-----k~v~l~rQGdinlvvn~~~~s~a~~f~~~Hgps~~ 89 (363)
T COG3185 16 NPEGTDGFEFVEFAVPDPQEALGALLGQ-LGFTAVAKHRS-----KAVTLYRQGDINLVVNAEPDSFAAEFLDKHGPSAC 89 (363)
T ss_pred CCCCCCceeEEEEecCCHHHHHHHHHHH-hCccccccccc-----cceeEEEeCCEEEEEcCCCcchhhHHHHhcCCchh
Confidence 455678999999999999 555556655 99998864432 22333 44665665554443311112245677778
Q ss_pred EEEEEECCHHHHHHHHHHCCCeEEec-------------CCCceEEEEECCC
Q 029044 151 HTCIAIRDVSKLKMILDKAGISYTLS-------------KSGRPAIFTRDPD 189 (200)
Q Consensus 151 hi~f~v~dv~~~~~~l~~~G~~~~~~-------------~~g~~~~~~~DPd 189 (200)
-++|.|+|...++++.++.|.+.... .-|+..+||-|.+
T Consensus 90 a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 90 AMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred eeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 89999999999999999999854221 1356778888887
No 104
>PF15067 FAM124: FAM124 family
Probab=97.00 E-value=0.0067 Score=48.03 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=58.3
Q ss_pred eEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC---Ce--EEEEEecCCCCCCCCCCCCCCceeEEE
Q 029044 81 HHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AE--MIHLMELPNPDPLSGRPEHGGRDRHTC 153 (200)
Q Consensus 81 ~hv~l~v~--Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g---~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~ 153 (200)
--++|+|+ |.+.+++||+-+|+-+.....+ +..|+.+- +. ++.|-..+ ......+... .-+.
T Consensus 130 lRftly~~~~N~~d~vr~Yelil~~~~~~~k~------~FC~F~lys~~~~~iQlsLK~lp--~~~~p~p~es---avLq 198 (236)
T PF15067_consen 130 LRFTLYCSFDNYEDMVRFYELILQREPTQQKE------DFCFFTLYSQPGLDIQLSLKQLP--PGMSPEPTES---AVLQ 198 (236)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhccCcceeeC------CcEEEEEecCCCeEEEEEeccCC--CCCCcccccc---eEEE
Confidence 34788898 9999999999999998866544 22444332 22 33333321 1111122222 3599
Q ss_pred EEECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEE
Q 029044 154 IAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 194 (200)
Q Consensus 154 f~v~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iE 194 (200)
|.|.|+.++...|=.-=..++.. .--..|||||.|=
T Consensus 199 F~V~~igqLvpLLPnpc~PIS~~-----rWqT~D~DGNkIL 234 (236)
T PF15067_consen 199 FRVEDIGQLVPLLPNPCSPISET-----RWQTEDYDGNKIL 234 (236)
T ss_pred EEecchhhhcccCCCCcccccCC-----cceeeCCCCCEec
Confidence 99999999865432221122222 2457899999873
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.01 E-value=0.036 Score=38.62 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=39.6
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeEEec----CCCceEEEEECCCC-CeEEEEEeC
Q 029044 150 RHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDA-NALEFTQVD 199 (200)
Q Consensus 150 ~hi~f~v~dv~~~~~~l~~-~G~~~~~~----~~g~~~~~~~DPdG-n~iEl~e~~ 199 (200)
+|++|.|+|++++.+.+.+ .|++.... ..+.+..++..++| ..|||+++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 89865332 34456788889988 689999875
No 106
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.53 E-value=0.11 Score=35.92 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=43.0
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC--
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 157 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~-- 157 (200)
+..|.|.|+| +++..||+++||-.. ...+.+.+..+++-........ .+..+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~-------------------~~~l~f~ea~G~DL~~~~~~tw-DLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQL-------------------PFFLTFQEAQGPDLTIENNETW-DLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHH-------------------TTTEEEEE---CCGSS-TTSBS-SEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCC-------------------CceEEEeeccCCccccCCCcEE-eeEEEEEEecCc
Confidence 5678999999 889999999886221 1224555544443332222233 3567888888
Q ss_pred -CHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeE
Q 029044 158 -DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 193 (200)
Q Consensus 158 -dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~i 193 (200)
|+.++.+++.+.+. +.. ...+.+-+.||.|..|
T Consensus 65 ~Dl~~L~~~le~~~~-fid--Kk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 65 FDLAALKSHLEEQEF-FID--KKEKFLVTSDPSQIEL 98 (101)
T ss_dssp --HHHHHHHTTTS-E-E----TT-SEEEEE-TTS-EE
T ss_pred ccHHHHHHHhcccce-Eec--CCceEEEEECCcceEE
Confidence 77888999888443 222 2346788899987543
No 107
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=94.44 E-value=0.19 Score=37.61 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=38.4
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-CeEEEEEe
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLME 132 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~~ 132 (200)
++++||+|.|+|+..+..-+++ +|.+.....+.... -..+|+.-. +.++++..
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~-K~iaF~~dpDgywiei~~ 167 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKM-KPIAFLHDPDGYWIEIEL 167 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccc-cceeEEECCCCCeEEEee
Confidence 6899999999999999999999 99996655543333 245665543 44666543
No 108
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=91.99 E-value=0.72 Score=33.15 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=37.3
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-CeEEEEEe
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLME 132 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~~ 132 (200)
.++.|+++.|.|++++.+-..+ .|.++.........+.+.+|+.-. +..++|++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 4789999999999999999998 798887532222223344555543 44667665
No 109
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=90.92 E-value=1.9 Score=30.95 Aligned_cols=59 Identities=10% Similarity=-0.042 Sum_probs=44.0
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-CeEEEEEecCCCC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPD 137 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~~~~~~~ 137 (200)
.++.|+.+.|.|++++.+=.++ .|.++.........+.+.++++-. +..++|++.....
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~~ 127 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGYK 127 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCCC
Confidence 4688999999999999988887 899998644433444556666654 5689999876653
No 110
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=90.37 E-value=1.2 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHCCCeEEe---cCCCceEEEEECCCCCeEEEE
Q 029044 158 DVSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~~~---~~~g~~~~~~~DPdGn~iEl~ 196 (200)
..+++.+.+++.|+++.. +.+|.+.+...|.||+.+|+.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~ 71 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVY 71 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEE
Confidence 688999999999997743 245678899999999999986
No 111
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=90.16 E-value=1.7 Score=30.15 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=26.6
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeec
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEAR 109 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~ 109 (200)
.++.|+.+.|.|++++.+...+ .|.++....
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~~ 101 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQEG 101 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeeccC
Confidence 5789999999999999999987 799887643
No 112
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=89.85 E-value=2.3 Score=31.71 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=37.7
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEec-----CC------------C-----ceEEEEECCCCCeEEEEEeC
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLS-----KS------------G-----RPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~-----~~------------g-----~~~~~~~DPdGn~iEl~e~~ 199 (200)
++.|+++.|.|+++..+-.++ .|.++... .. + ....++..++|..||+++..
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 468999999999999998876 68866311 00 1 23456666778889999864
No 113
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=89.72 E-value=1.9 Score=32.06 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=34.7
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEEC--CCCCeEEEEEe
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD--PDANALEFTQV 198 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~D--PdGn~iEl~e~ 198 (200)
|+.|+++.|+|+++..+...+ .|.++.....+. ..++.. .+|..|++.+.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGDR-VRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCE-EEEEecCCCCCCEEEEEeC
Confidence 468999999999999998866 598876543332 222332 24788888764
No 114
>PLN02367 lactoylglutathione lyase
Probab=89.61 E-value=1.7 Score=34.83 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=41.0
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEEecCCC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNP 136 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~ 136 (200)
.+++||+|.|.|++++.+-.++ .|.++..... .......+|+.- ++..++|++....
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~-~g~~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPN-DGKMKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCc-cCCceEEEEEECCCCCEEEEEecccc
Confidence 4899999999999999999988 9999985332 211123456654 4568888875544
No 115
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.33 E-value=2 Score=29.97 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=34.5
Q ss_pred ceeEEEEEECCHHHHHHHHHHC----CCeEEecCCCceEEEEECCCCCeEEEEEe
Q 029044 148 RDRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~~----G~~~~~~~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
++.|+.+.|.|++++.+...+. |.+......+ ...|+...++..+++++.
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~ 54 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQA 54 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEec
Confidence 3579999999999998888775 8887654322 233443345677777754
No 116
>PRK11478 putative lyase; Provisional
Probab=88.17 E-value=3.8 Score=28.62 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=34.4
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEEe
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 132 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~ 132 (200)
.++.|+++.|.|++++.+-..+ .|.++.........+...+|+.- ++..+++++
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 4689999999999999998877 79987643211112223444443 234555543
No 117
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.82 E-value=3.9 Score=28.00 Aligned_cols=50 Identities=16% Similarity=0.023 Sum_probs=35.2
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecC--CC--ceEEEEECCCCCeEEEEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK--SG--RPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~--~g--~~~~~~~DPdGn~iEl~e 197 (200)
++.|+++.|.|++++.+...+ .|..+.... .+ ...+.+..+++..+|+..
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 468999999999999999975 798875432 11 223444556677788764
No 118
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=86.12 E-value=11 Score=29.21 Aligned_cols=77 Identities=19% Similarity=0.125 Sum_probs=42.7
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeec-CCCCCCceEE----EEEeCCeEEEEEecCCCCCCCCCCCCCCceeEE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGA----WLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 152 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~-~~~~~~~~~~----~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi 152 (200)
..++||.++|++.+.+.+|-...+..-..-.. .....+.... =+..++..+.+++.+-+.. ..+ ...|.-||
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~--K~Y-p~eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKD--KRY-PQEGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---S--S---SS-EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC--CCC-CCCCceEE
Confidence 36899999999999999999987755433221 1111111111 1445777888888776543 112 22467899
Q ss_pred EEEEC
Q 029044 153 CIAIR 157 (200)
Q Consensus 153 ~f~v~ 157 (200)
-|.++
T Consensus 110 E~Vip 114 (185)
T PF06185_consen 110 EFVIP 114 (185)
T ss_dssp EEE--
T ss_pred EEEec
Confidence 99997
No 119
>PRK10291 glyoxalase I; Provisional
Probab=86.02 E-value=6.6 Score=27.59 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=38.5
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeec-CCCCCCceEEEEEe-CCeEEEEEecCC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGAWLWV-GAEMIHLMELPN 135 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~-~~~~~~~~~~~l~~-g~~~~~l~~~~~ 135 (200)
.+++|+.+.|.|++++.+-..+ .|.++.... +........+|+.- ++..++|++...
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 4689999999999999888877 898876432 11122223455443 456888887553
No 120
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=85.50 E-value=3.9 Score=26.80 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=36.1
Q ss_pred EEEEEECCHHHHHHHHHH-CCCeEEecCC--CceEEEEECCCCCeEEEEEeC
Q 029044 151 HTCIAIRDVSKLKMILDK-AGISYTLSKS--GRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 151 hi~f~v~dv~~~~~~l~~-~G~~~~~~~~--g~~~~~~~DPdGn~iEl~e~~ 199 (200)
|+.+.+.|+++..+.+.+ .|.+...... .....++.++ +..|+|.+..
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~ 51 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEGD 51 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecCC
Confidence 788999999999999987 8988766543 2455666655 7888887643
No 121
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=85.40 E-value=4.9 Score=27.48 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=35.0
Q ss_pred eeEEEEEECCHHHHHHHHHHC-CCeEEecC---C-CceEEEEECCC---CCeEEEEEe
Q 029044 149 DRHTCIAIRDVSKLKMILDKA-GISYTLSK---S-GRPAIFTRDPD---ANALEFTQV 198 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~~~-G~~~~~~~---~-g~~~~~~~DPd---Gn~iEl~e~ 198 (200)
+.|+++.|+|++++.+...+. |.+..... + +...+++..++ +..+++.+.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEec
Confidence 369999999999999999874 98875432 2 23345565554 577887653
No 122
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=85.32 E-value=4.5 Score=31.22 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=39.2
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEEecCCC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNP 136 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~ 136 (200)
.+++|+.|.|.|++++.+.+.+ .|..+..... ........|+.- ++..++|++..+-
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~-~~~~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPD-DGKMKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCc-cCCceeEEEEECCCCCEEEEEECCCc
Confidence 4899999999999999999988 8998874322 111123345443 4557888875543
No 123
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=84.11 E-value=4.2 Score=27.04 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=33.9
Q ss_pred eeEEEEEECCHHHHHHHHH-HCCCeEEecCCC-ceEEEEECCCCCeEEEEEe
Q 029044 149 DRHTCIAIRDVSKLKMILD-KAGISYTLSKSG-RPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~-~~G~~~~~~~~g-~~~~~~~DPdGn~iEl~e~ 198 (200)
+.|+++.|+|++++.+... -.|.+....... ....++..+++..++|...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 3699999999999988886 568776543221 2345666555557777653
No 124
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=83.83 E-value=6.8 Score=26.82 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=35.2
Q ss_pred eeEEEEEECCHHHHHHHHHH-CCCeEEecC---C--CceEEEEECC---CCCeEEEEEe
Q 029044 149 DRHTCIAIRDVSKLKMILDK-AGISYTLSK---S--GRPAIFTRDP---DANALEFTQV 198 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~---~--g~~~~~~~DP---dGn~iEl~e~ 198 (200)
+.|+++.|.|++++.+..++ .|.+..... . +....++.+. +|..+++++.
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 57999999999999999876 698775432 1 1234555554 5678888764
No 125
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=83.77 E-value=8.6 Score=26.30 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=34.1
Q ss_pred eeEEEEEECCHHHHHHHHHH-CCCeEEec----CCCceEEEEECCCCCeEEEEE
Q 029044 149 DRHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~~-~G~~~~~~----~~g~~~~~~~DPdGn~iEl~e 197 (200)
+.|+++.|+|+++..+-..+ .|.+.... ..+....|+.-.+|..+++++
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 55 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMT 55 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEc
Confidence 47999999999999888876 57775321 123334455545677888875
No 126
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=83.74 E-value=4.7 Score=27.83 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=29.6
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEE
Q 029044 150 RHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 195 (200)
Q Consensus 150 ~hi~f~v~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl 195 (200)
.|+.+.|+|+++..+-.+..|.+......+...+.+..++|..+.+
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~~~~~~~~~~~~l~l 47 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEADDEPHVEAVLPGGVRLAW 47 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCcCCCCcEEEEeCCCEEEEE
Confidence 6899999999999888877888764432221233344444544433
No 127
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=83.62 E-value=9.3 Score=26.83 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.2
Q ss_pred eeEEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECC--CCCeEEEEEe
Q 029044 149 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 198 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP--dGn~iEl~e~ 198 (200)
+.|+.+.|.|+++..+...+ .|.++.....+....|+..+ .+..+++++.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 57999999999999998876 79887654432234455443 3456776643
No 128
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=83.06 E-value=6.2 Score=26.60 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=33.3
Q ss_pred EEEEEECCHHHHHHHHHH-CCCeEEecC---CCceEEEEECCCC--CeEEEEE
Q 029044 151 HTCIAIRDVSKLKMILDK-AGISYTLSK---SGRPAIFTRDPDA--NALEFTQ 197 (200)
Q Consensus 151 hi~f~v~dv~~~~~~l~~-~G~~~~~~~---~g~~~~~~~DPdG--n~iEl~e 197 (200)
|+++.|.|++++.+-..+ .|.++.... .+...+.+.++++ ..+++.+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAP 53 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeC
Confidence 789999999999998886 899886543 2344555666654 4555543
No 129
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=82.75 E-value=5.8 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=25.3
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeee
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEA 108 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~ 108 (200)
.++.|+++.|.|++++.+.... .|.++...
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~~ 100 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLIDE 100 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccCC
Confidence 4688999999999999998877 78887653
No 130
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=80.37 E-value=21 Score=26.49 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=45.4
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEE------EEeCCeEEEEEecCCCCCCCCCCCCCCceeEEE
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW------LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 153 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~------l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 153 (200)
++||.++|.+.+.+.+|-...+..--.-... .=.+.-..- +.+++..+..++.+-+.. ...+ ..|.-||-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen-~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~Yp--~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSEN-EINGRPIALIKLEKPLQFAGWSISIVELPFPKD-KKYP--QEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhcc-ccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC--CCCceEEE
Confidence 5899999999999999998765333221111 001111121 344677888888776543 1122 23578999
Q ss_pred EEEC
Q 029044 154 IAIR 157 (200)
Q Consensus 154 f~v~ 157 (200)
+.++
T Consensus 78 ~Vlp 81 (149)
T cd07268 78 IVIP 81 (149)
T ss_pred EEec
Confidence 9887
No 131
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=79.04 E-value=15 Score=25.19 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=33.2
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECCC-CCeEEEEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQ 197 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPd-Gn~iEl~e 197 (200)
.+.|+.+.|+|+++..+-..+ .|.++..... ..+++...+ +..|.+.+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~ 51 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEE 51 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEe
Confidence 367999999999999998876 6988866532 234444443 45565554
No 132
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=77.69 E-value=11 Score=25.10 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.6
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhccCCEEeee
Q 029044 77 VVSVHHVGILCENLERSLEFYQNILGLEINEA 108 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~ 108 (200)
-.+..|+.+.|.|+++..+...+ +|.++...
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~ 84 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKE-LGAEIVTE 84 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHH-TTSEEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHH-CCCeEeeC
Confidence 34688999999999999999998 89997654
No 133
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=77.28 E-value=11 Score=25.54 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=25.0
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecC
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 177 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~ 177 (200)
++.|+.+.|+|+++..+-.++ .|.+.....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 468999999999999998887 688876543
No 134
>PRK11700 hypothetical protein; Provisional
Probab=76.93 E-value=32 Score=26.60 Aligned_cols=76 Identities=21% Similarity=0.210 Sum_probs=46.5
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEE------EEeCCeEEEEEecCCCCCCCCCCCCCCceeE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW------LWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 151 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~------l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~h 151 (200)
..++||.++|++.+.+.+|-...+-.--.-... .=.+...+- +.+++..+..++.+-+.. ...| + .|.-|
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen-~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Yp-~-eGWEH 113 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSEN-IINGRPICLFELDQPLQVGHWSIDCVELPYPGE-KRYP-H-EGWEH 113 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhcc-ccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC-C-CCceE
Confidence 358999999999999999988765332221111 011111121 344677888888776543 1222 2 35789
Q ss_pred EEEEEC
Q 029044 152 TCIAIR 157 (200)
Q Consensus 152 i~f~v~ 157 (200)
|-+.++
T Consensus 114 IElVlp 119 (187)
T PRK11700 114 IELVLP 119 (187)
T ss_pred EEEEec
Confidence 999987
No 135
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=76.87 E-value=16 Score=25.22 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=31.4
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECC-CCCeEEEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP-DANALEFT 196 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP-dGn~iEl~ 196 (200)
++.|+.+.|.|++++.+-..+ .|.+......+ ...++..+ .+..+.+.
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-GALYLRMDDRAWRIAVH 51 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC-CeEEEEccCCceEEEEE
Confidence 357999999999999998876 69887554222 23445443 23444443
No 136
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=76.35 E-value=15 Score=24.99 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=32.6
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecCC-----Cc-eEEEEECCCCCeEEEEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKS-----GR-PAIFTRDPDANALEFTQ 197 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~-----g~-~~~~~~DPdGn~iEl~e 197 (200)
++.|+++.|.|++++.+-..+ .|.++..... +. ...++... +..+++..
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 56 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG-EGHIELFL 56 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST-SSCEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc-ccceeeee
Confidence 368999999999999888876 6888755322 22 33344444 44566654
No 137
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=75.46 E-value=14 Score=26.79 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=37.7
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecC-CCCCCceEEEEEe-CCeEEEEEecC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMELP 134 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~-~~~~~~~~~~l~~-g~~~~~l~~~~ 134 (200)
.++.|+.+.|.|++++.+...+ .|.++..... .........|+.- .+..++|+...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 3788999999999999999988 8988764321 1112223344443 45578887644
No 138
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=72.48 E-value=23 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=24.3
Q ss_pred ceeEEEEEECCHHHHHHHHHHCCCeEEec
Q 029044 148 RDRHTCIAIRDVSKLKMILDKAGISYTLS 176 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~~G~~~~~~ 176 (200)
++.|+++.|.|++++.+-....|.+....
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 46899999999999988887789887543
No 139
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=72.39 E-value=19 Score=24.69 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=30.9
Q ss_pred eEEEEEECCHHHHHHHHHH----CCCeEEecCCCceEEEEECC-CCCeEEEEE
Q 029044 150 RHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDP-DANALEFTQ 197 (200)
Q Consensus 150 ~hi~f~v~dv~~~~~~l~~----~G~~~~~~~~g~~~~~~~DP-dGn~iEl~e 197 (200)
.|+.+.|.|++++.+-.++ .|.+......+. .+++..+ .+..+.+..
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 53 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPG-AVGYGKGGGGPDFWVTK 53 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCc-eeEeccCCCCceEEEec
Confidence 6999999999999888876 488775443122 3444444 345566654
No 140
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=71.73 E-value=23 Score=24.02 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.9
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEee
Q 029044 82 HVGILCENLERSLEFYQNILGLEINE 107 (200)
Q Consensus 82 hv~l~v~Dl~~s~~FY~~vLG~~~~~ 107 (200)
|+.+.|.|+++..+...+ .|.++..
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~ 93 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVL 93 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeee
Confidence 899999999999999988 7887654
No 141
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=69.41 E-value=19 Score=25.52 Aligned_cols=55 Identities=5% Similarity=-0.019 Sum_probs=34.5
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCCCC-CCceEEEEEe-CCeEEEEEe
Q 029044 78 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLWV-GAEMIHLME 132 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~v--LG~~~~~~~~~~~-~~~~~~~l~~-g~~~~~l~~ 132 (200)
.+++|+++.|.|++...+++..+ .|.++........ ......|+.- ++..++|..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 57999999999999999988876 6777653221111 1111123433 455777764
No 142
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=68.21 E-value=32 Score=23.09 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=29.1
Q ss_pred eeEEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECC
Q 029044 149 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP 188 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP 188 (200)
+.|+.+.|.|+++..+-..+ .|.++..... ..+++..+
T Consensus 3 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~ 41 (117)
T cd07240 3 IAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCS 41 (117)
T ss_pred eeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecC
Confidence 57999999999999998887 7988865542 24566654
No 143
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=65.69 E-value=35 Score=23.47 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.7
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeEEe
Q 029044 150 RHTCIAIRDVSKLKMILDKAGISYTL 175 (200)
Q Consensus 150 ~hi~f~v~dv~~~~~~l~~~G~~~~~ 175 (200)
.++.+.|+|+++..+-.+..|.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcc
Confidence 46889999999998888888888653
No 144
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=65.20 E-value=39 Score=22.66 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=23.5
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeee
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEA 108 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~ 108 (200)
..|+.+.|.|++++.+-+.+ .|.++...
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 45899999999999998877 88887653
No 145
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.31 E-value=19 Score=21.68 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.9
Q ss_pred eeEEEEEECCHHHHHHHHHHCCCeE
Q 029044 149 DRHTCIAIRDVSKLKMILDKAGISY 173 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~~~G~~~ 173 (200)
...+.|.+++.+.+.+.|+++|+++
T Consensus 40 ~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 40 KALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred eEEEEEEeCCHHHHHHHHHHCCceE
Confidence 3568899999999999999999875
No 146
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=63.71 E-value=42 Score=22.50 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=24.8
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeec
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEAR 109 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~ 109 (200)
...|+.+.|.|+++..+-..+ .|.++....
T Consensus 61 ~~~~~~f~v~di~~~~~~l~~-~g~~~~~~~ 90 (114)
T cd07247 61 PGWLVYFAVDDVDAAAARVEA-AGGKVLVPP 90 (114)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEEeCC
Confidence 466899999999999998877 799887543
No 147
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=62.66 E-value=45 Score=22.57 Aligned_cols=53 Identities=6% Similarity=-0.174 Sum_probs=32.4
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEEe
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 132 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~ 132 (200)
.++.|+.+.|.|.++..+.... +|........ ...+....|+.- ++..++|+.
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~~-~g~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAAL-PGASVIDDLE-APGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CcccEEEEEECCHHHHHHHHHc-CCCeeecCCC-CCCCceEEEEECCCCCEEEEEe
Confidence 4688999999999988888654 8887654221 111122344433 344666654
No 148
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=62.55 E-value=47 Score=22.69 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=24.9
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecC
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 177 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~ 177 (200)
++.|+.+.|.|++++.+-..+ .|.++....
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeeec
Confidence 568999999999999998876 798875543
No 149
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=61.62 E-value=58 Score=23.73 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=33.7
Q ss_pred CceeEEEEEECCHHHHHHHHHH-CCCeEEec--CC-----CceEEEEE-CCCCCeEEEEE
Q 029044 147 GRDRHTCIAIRDVSKLKMILDK-AGISYTLS--KS-----GRPAIFTR-DPDANALEFTQ 197 (200)
Q Consensus 147 ~~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~--~~-----g~~~~~~~-DPdGn~iEl~e 197 (200)
.++.|+++.|+|++++.+...+ .|.++... .. +....++. +++++.+++.+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 3578999999999999988876 78876432 11 22344443 44556666654
No 150
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.49 E-value=65 Score=23.94 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=56.2
Q ss_pred EEcCCHHHHHHHHHhccCCEE-e--eecCCC-----CCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEE
Q 029044 85 ILCENLERSLEFYQNILGLEI-N--EARPHD-----KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 156 (200)
Q Consensus 85 l~v~Dl~~s~~FY~~vLG~~~-~--~~~~~~-----~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 156 (200)
..-.+.+++..||.++|.=.- . .+.+.+ ....-.+-+++++..+..+...... ....... ..+-+.+
T Consensus 11 ~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~----~f~fneA-~S~~v~~ 85 (151)
T COG3865 11 WFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNT----SFKFNEA-FSFQVAC 85 (151)
T ss_pred EECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCc----CCCcCcc-EEEEEEc
Confidence 344899999999999874322 2 122111 1222335567777655544322211 1112212 2344455
Q ss_pred CC---HHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEE
Q 029044 157 RD---VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 157 ~d---v~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~ 196 (200)
+| +|.+++.|...|.+. ....+++|-.|.-|.|+
T Consensus 86 ~~q~E~Drlwnal~~~g~e~------~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 86 DDQEEIDRLWNALSDNGGEA------EACGWLKDKFGVSWQIV 122 (151)
T ss_pred CCHHHHHHHHHHHhccCcch------hcceeEecccCcEEEEc
Confidence 54 566788888888633 23567888888877765
No 151
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=61.11 E-value=45 Score=23.50 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=22.6
Q ss_pred eeEEEEEECCHHHHHHHHHH-CCCeEEec
Q 029044 149 DRHTCIAIRDVSKLKMILDK-AGISYTLS 176 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~~-~G~~~~~~ 176 (200)
+.|+++.|+|++++.+-..+ .|.++...
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEecc
Confidence 36999999999999888876 58776543
No 152
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=60.76 E-value=51 Score=24.04 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=24.0
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhc--cCCEEee
Q 029044 78 VSVHHVGILCENLERSLEFYQNI--LGLEINE 107 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~v--LG~~~~~ 107 (200)
.+++|+++.|.|+++..+.+..+ .|+++..
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~ 97 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVW 97 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEee
Confidence 57999999999999998655543 7887764
No 153
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=60.34 E-value=53 Score=22.58 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=31.4
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECCCCCeEEEEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPdGn~iEl~e 197 (200)
.+.|+.+.|.|+++..+-..+ .|.+..... + ...++...+|..+++.+
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~-~-~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF-G-PFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc-C-CEEEEEcCCCcEEEEec
Confidence 357999999999999888865 588775532 1 12333434455666554
No 154
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=59.17 E-value=12 Score=28.21 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.2
Q ss_pred CceeceEeEEEEEcCCHHHHHHHHHhcc
Q 029044 74 DYGVVSVHHVGILCENLERSLEFYQNIL 101 (200)
Q Consensus 74 ~~~i~~l~hv~l~v~Dl~~s~~FY~~vL 101 (200)
+-...+|.+|.+.++|++++.++|..+|
T Consensus 148 ~ng~~~i~~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 148 PNGALGITRVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp --TTEEEEEEEEEETTHHHHHHHHHHH-
T ss_pred CCccceEEEEEEEeCCHHHHHHHHHhhC
Confidence 3456799999999999999999999865
No 155
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=58.68 E-value=53 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=22.7
Q ss_pred ceEeEEEEEcC--CHHHHHHHHHhccCCEEee
Q 029044 78 VSVHHVGILCE--NLERSLEFYQNILGLEINE 107 (200)
Q Consensus 78 ~~l~hv~l~v~--Dl~~s~~FY~~vLG~~~~~ 107 (200)
.+++|+.+.+. |+++..+...+ .|.++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 35789999986 88888888777 7888754
No 156
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=57.19 E-value=58 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.7
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYT 174 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~ 174 (200)
.+.|+.+.|+|++++.+..++ .|.+..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~ 31 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVS 31 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEE
Confidence 468999999999999988865 688764
No 157
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=56.80 E-value=58 Score=21.90 Aligned_cols=52 Identities=6% Similarity=-0.068 Sum_probs=31.2
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeC-CeEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLM 131 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~ 131 (200)
+..|+.+.|.|++++.+-..+ .|.++.........+.+.+++.-. +..++|.
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~ 120 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMPPADQFWGDRYGGVRDPFGHRWWIA 120 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecCcccccccceEEEEECCCCCEEEEe
Confidence 466899999999988776665 688876543322333334444332 3344443
No 158
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=56.49 E-value=64 Score=22.34 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=31.0
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEE-CCCCCeEEEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTR-DPDANALEFT 196 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~-DPdGn~iEl~ 196 (200)
.+.|+++.|+|+++..+...+ .|.+......+ ..|+. +.++..+-+.
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~~--~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTAK--ATYFRSDARDHTLVYI 54 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCCC--eEEEEcCCccEEEEEE
Confidence 467999999999999988876 59887544322 34443 3344444443
No 159
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=55.56 E-value=49 Score=22.21 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=29.2
Q ss_pred EEEEECCHHHHHHHHHHC-CCeEEecCCCceEEEEECCCCCeEEEEE
Q 029044 152 TCIAIRDVSKLKMILDKA-GISYTLSKSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 152 i~f~v~dv~~~~~~l~~~-G~~~~~~~~g~~~~~~~DPdGn~iEl~e 197 (200)
+.+.|+|++++.+-..+. |.+..... +....++.. +|..+++++
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~-~~~~~~~~~-~~~~~~l~~ 46 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS-NDGVAFFQL-GGLVLALFP 46 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC-CCceEEEEc-CCeEEEEec
Confidence 678999999998888765 88775542 122334444 566677664
No 160
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=54.81 E-value=75 Score=22.90 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=32.5
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCC-CCCCceEEEEEe-CCeEEEEEe
Q 029044 77 VVSVHHVGILCENLERSLEFYQNI--LGLEINEARPH-DKLPYRGAWLWV-GAEMIHLME 132 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~v--LG~~~~~~~~~-~~~~~~~~~l~~-g~~~~~l~~ 132 (200)
-.+++|+.+.|.|.+...+++..+ .|.++...... ........|+.- ++..+++..
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 358999999999887666666654 68776542211 111122234443 345677654
No 161
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.68 E-value=40 Score=20.78 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=20.9
Q ss_pred eEEEEEEC--CHHHHHHHHHHCCCeEEec
Q 029044 150 RHTCIAIR--DVSKLKMILDKAGISYTLS 176 (200)
Q Consensus 150 ~hi~f~v~--dv~~~~~~l~~~G~~~~~~ 176 (200)
..+.|.++ +.+.+.+.|+++|+++.+.
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 34556554 8889999999999998763
No 162
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=54.27 E-value=20 Score=27.55 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=53.2
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCCeEEEEEecCCCCCCCCCCCCCCceeEEEEEEC
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 157 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~ 157 (200)
.+++||++.|.|++++.+-..+ -|.++...... +|-.+. ..... .
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~-~Gv~~l~~P~~-------yy~~l~----------------------~r~~~-----~ 126 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRA-RGVEFLPIPDN-------YYDDLE----------------------ARLDG-----I 126 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHH-cCCeeccCchh-------hHHHHH----------------------Hhccc-----c
Confidence 5899999999999999999988 68877643220 000000 00000 1
Q ss_pred CHHHHHHHHHHCCCeEEecCCCc-eEEEEE---CCCCCeEEEEEeC
Q 029044 158 DVSKLKMILDKAGISYTLSKSGR-PAIFTR---DPDANALEFTQVD 199 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~~~~~~g~-~~~~~~---DPdGn~iEl~e~~ 199 (200)
..++..+.|++.|+-+..+..|. -.+|.+ |-++.-+||+|..
T Consensus 127 ~~~~~~~~l~~~~il~d~~~~~~llq~ft~~~~~~~~~f~E~iqR~ 172 (191)
T cd07250 127 LVDEDLDTLRELGILVDRDDGGYLLQIFTKPVFDRPTFFFEIIQRR 172 (191)
T ss_pred ccchhHHHHHHCCEEEECCCCCEEEEEeccCCCCCCCeEEEEEEEc
Confidence 23455778888888776655442 333332 3357888988864
No 163
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=54.18 E-value=63 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=20.3
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhc--cCCEEe
Q 029044 78 VSVHHVGILCENLERSLEFYQNI--LGLEIN 106 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~v--LG~~~~ 106 (200)
.+++|+++.|.+.+.-.+++..+ .|.++.
T Consensus 61 ~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~ 91 (121)
T cd09013 61 AGLGHIAWRASSPEALERRVAALEASGLGIG 91 (121)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCccc
Confidence 36899999998766666666543 576653
No 164
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=53.50 E-value=76 Score=22.25 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=19.2
Q ss_pred eEeEEEEEcC--CHHHHHHHHHhccCCEEee
Q 029044 79 SVHHVGILCE--NLERSLEFYQNILGLEINE 107 (200)
Q Consensus 79 ~l~hv~l~v~--Dl~~s~~FY~~vLG~~~~~ 107 (200)
+++|+.+.|. |+++..+-..+ .|..+..
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l~~-~gv~~~~ 95 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERIKA-LGVEMKP 95 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHHHH-CCCEEec
Confidence 6899999997 45555555544 7877653
No 165
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=53.10 E-value=68 Score=21.60 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=23.7
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEec
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 176 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~ 176 (200)
++.|+.|.|.|+++..+-..+ .|.+....
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 578999999999999888876 68876543
No 166
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=52.50 E-value=71 Score=21.64 Aligned_cols=27 Identities=4% Similarity=0.156 Sum_probs=22.5
Q ss_pred eEEEEEcCCHHHHHHHHHhccCCEEeee
Q 029044 81 HHVGILCENLERSLEFYQNILGLEINEA 108 (200)
Q Consensus 81 ~hv~l~v~Dl~~s~~FY~~vLG~~~~~~ 108 (200)
.|+.|.|.|++++.+...+ .|.++...
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 4899999999999888877 78887643
No 167
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=51.95 E-value=55 Score=21.77 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=29.5
Q ss_pred ceEeEEEEEcC--CHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEe-CCeEEEEE
Q 029044 78 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 131 (200)
Q Consensus 78 ~~l~hv~l~v~--Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~ 131 (200)
.++.|+.+.|. |+++..+-..+ .|.++...........+..|+.- ++..++++
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~ 109 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERLKA-LGVEMKPERPRVQGEGRSIYFYDPDGHLLELH 109 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHH-cCCccCCCccccCCCceEEEEECCCCCEEEEE
Confidence 35789999995 56666666665 68887643222111223344443 34466665
No 168
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.29 E-value=88 Score=22.38 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=22.7
Q ss_pred eeEEEEEECCHHHHHHHHH-HCCCeEEe
Q 029044 149 DRHTCIAIRDVSKLKMILD-KAGISYTL 175 (200)
Q Consensus 149 ~~hi~f~v~dv~~~~~~l~-~~G~~~~~ 175 (200)
+.|+++.|.|+++..+--. ..|.+...
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 5799999999999999885 47998644
No 169
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=50.08 E-value=78 Score=21.41 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=24.8
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEecC
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 177 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~~ 177 (200)
++.|+.+.|+|++++.+-..+ .|.++....
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeccC
Confidence 468999999999999998876 688876543
No 170
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=49.93 E-value=86 Score=22.53 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=31.8
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCCCC-CCceEEEEE-eCCeEEEEEe
Q 029044 78 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLW-VGAEMIHLME 132 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~v--LG~~~~~~~~~~~-~~~~~~~l~-~g~~~~~l~~ 132 (200)
.+++|+++.|.|+++..+.+..+ .|.++........ ......++. .++..++|..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 46899999999999866555443 6777653211111 111223343 3455787765
No 171
>PRK06724 hypothetical protein; Provisional
Probab=49.67 E-value=91 Score=22.05 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=30.8
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCC-C--CCCceEEEEE-eCCeEEEEEec
Q 029044 78 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPH-D--KLPYRGAWLW-VGAEMIHLMEL 133 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~v--LG~~~~~~~~~-~--~~~~~~~~l~-~g~~~~~l~~~ 133 (200)
.+..|+++.|.+.+.-.++++.+ .|.++...... . ..+....++. .++..+++...
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 36789999985555555555544 78887542211 1 1222333333 34557777654
No 172
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.12 E-value=42 Score=21.65 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCeEEecC---CC---ceEEEEECCCCCeE
Q 029044 159 VSKLKMILDKAGISYTLSK---SG---RPAIFTRDPDANAL 193 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~~~~---~g---~~~~~~~DPdGn~i 193 (200)
+..+...|.+.|+.+...+ .| .-.||+.|.+|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4566778888999885432 22 35699999999876
No 173
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=45.78 E-value=96 Score=21.56 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=30.8
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeEEecCC--C-ceEEEEECCC-CCeEEEEE
Q 029044 150 RHTCIAIRDVSKLKMILDK-AGISYTLSKS--G-RPAIFTRDPD-ANALEFTQ 197 (200)
Q Consensus 150 ~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~--g-~~~~~~~DPd-Gn~iEl~e 197 (200)
.|+++.|+|++++.+-..+ .|.+...... + ....|+...+ +..+++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEc
Confidence 4899999999999998876 7988744321 1 2344555433 33455543
No 174
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=45.41 E-value=87 Score=20.59 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=21.7
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhccCCE
Q 029044 78 VSVHHVGILCENLERSLEFYQNILGLE 104 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~vLG~~ 104 (200)
.+-.|+.+.|.|+++..+-..+ .|.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 57 GRGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CCcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 3455899999999999998887 7887
No 175
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=41.70 E-value=46 Score=27.06 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEE
Q 029044 159 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 195 (200)
Q Consensus 159 v~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl 195 (200)
.+++.+.++++|+++...+..--++|+.|||++.+=+
T Consensus 150 ~~~i~k~wk~rgi~F~~~k~slISV~~h~~d~~~lFv 186 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNNDKASLISVFLHDPDDNSLFV 186 (250)
T ss_pred HHHHHHHHHHcCceeCCCceEEEEEEEEcCCCCeEEe
Confidence 3566778889999994444445678899998887643
No 176
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=41.21 E-value=1.1e+02 Score=20.68 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=31.0
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccC-CEEeeecCCCCCCceEEEEEeC-CeEEEEE
Q 029044 79 SVHHVGILCENLERSLEFYQNILG-LEINEARPHDKLPYRGAWLWVG-AEMIHLM 131 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG-~~~~~~~~~~~~~~~~~~l~~g-~~~~~l~ 131 (200)
+..|+.+.|.|+++..+-.++ .| .++.........+.+..++.-+ +..+++.
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKR-YDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVG 117 (120)
T ss_pred CceEEEEEehhhHHHHHHHHh-cCCcEEecCcccCCCccEEEEEECCCCCEEEEe
Confidence 346899999999999999988 55 4554332222223334444433 3355544
No 177
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.47 E-value=70 Score=20.90 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=22.5
Q ss_pred eEEEEEECC----HHHHHHHHHHCCCeEEec
Q 029044 150 RHTCIAIRD----VSKLKMILDKAGISYTLS 176 (200)
Q Consensus 150 ~hi~f~v~d----v~~~~~~l~~~G~~~~~~ 176 (200)
..+.++++| ++++.+.|+++|+++...
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 457788888 899999999999988553
No 178
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=38.18 E-value=48 Score=23.22 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=31.1
Q ss_pred ECCHHHHHHHHHHCCCeEEec------CCCceEEEEECCCCCeEEEEEeC
Q 029044 156 IRDVSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 156 v~dv~~~~~~l~~~G~~~~~~------~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
+.++.+.+++|.+.| .+..+ ..|.-.+...|++|.+.|-....
T Consensus 23 ik~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 23 IKNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 346788899999998 44222 14556678899999999876554
No 179
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=38.10 E-value=1.3e+02 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.5
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEEec
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 176 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~~~ 176 (200)
++.|+.+.|.|++++.+...+ .|.+....
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 357999999999999888875 68877543
No 180
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=37.37 E-value=1.2e+02 Score=22.45 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=32.2
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhc--cCCEEeeecCCCC-CCceEEEEE-eCCeEEEEEec
Q 029044 78 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLW-VGAEMIHLMEL 133 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~v--LG~~~~~~~~~~~-~~~~~~~l~-~g~~~~~l~~~ 133 (200)
.+++|+++.|.|.+...+++..+ .|.++........ ......|+. .++..+++...
T Consensus 68 ~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 68 GRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 36899999999888776666554 5766543211111 111123333 34567887765
No 181
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=37.27 E-value=32 Score=28.74 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=34.3
Q ss_pred eEEEEEc-----CCHHHHHHHHHhccCCEEeeecCCCCCCceEEEEEeCC
Q 029044 81 HHVGILC-----ENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA 125 (200)
Q Consensus 81 ~hv~l~v-----~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~ 125 (200)
+|+.|++ ..++...+++.. ||+.+....+....+....|++..+
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~~-lGy~~~G~Y~f~~kkl~a~~f~p~d 84 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFAA-LGYEPVGYYDFPAKKLHATWFRPPD 84 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHHT-TTEEEEEEEEEGGGTEEEEEEEETS
T ss_pred eeeEEEecCCCchhHHHHHHHHHH-cCCEEcceecccccCceEEEecCCC
Confidence 8898883 678888888887 9999998777666667777777653
No 182
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=36.54 E-value=1.3e+02 Score=23.50 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=33.2
Q ss_pred EEEEE--CCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEEE
Q 029044 152 TCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 152 i~f~v--~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~e 197 (200)
+.+-| +|++++.+.|.+.|++.... .+....|...+.|..||+..
T Consensus 97 iDlLV~~~d~~~a~~~L~~~Gy~~~~~-~~~~~~~~~~~~~~~idlH~ 143 (249)
T PF14907_consen 97 IDLLVPPEDLERAVELLEELGYRIESP-SEHHWVYSHEPKGISIDLHW 143 (249)
T ss_pred eEEEEeCCcHHHHHHHHHHcCCEeccC-CCcceEEEecCCCEEEEEEe
Confidence 66666 59999999999999987664 33344555547788888864
No 183
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.92 E-value=94 Score=24.86 Aligned_cols=20 Identities=30% Similarity=0.710 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHhccCCEEee
Q 029044 88 ENLERSLEFYQNILGLEINE 107 (200)
Q Consensus 88 ~Dl~~s~~FY~~vLG~~~~~ 107 (200)
.|+.+++.||.+.||+++..
T Consensus 145 a~~~e~a~wy~dyLGleie~ 164 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEA 164 (246)
T ss_pred hccHHHHHHHHHhcCceeee
Confidence 46788899999999999875
No 184
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=34.87 E-value=1.5e+02 Score=20.46 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHCCCeEEe--c----------CCCceEEEEECCCCCeEEEEEe
Q 029044 158 DVSKLKMILDKAGISYTL--S----------KSGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~~~--~----------~~g~~~~~~~DPdGn~iEl~e~ 198 (200)
+.+++.+.+++.|+.+.. + ..+.+..++.|++|.++.....
T Consensus 72 ~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 72 DLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 455556666666665421 1 1245788999999998876543
No 185
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=33.14 E-value=89 Score=18.96 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEEEeC
Q 029044 158 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
++++-..+-...|-.+......+ .+-..+|||.++-|.+..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g-~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPG-PVAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B-----S--EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCCCc-eEEEECCCCcEEEEEEcc
Confidence 34445555566676665432222 355789999999998754
No 186
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=32.59 E-value=1e+02 Score=18.78 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEECCHHHHHHHHHHCCCeEE
Q 029044 152 TCIAIRDVSKLKMILDKAGISYT 174 (200)
Q Consensus 152 i~f~v~dv~~~~~~l~~~G~~~~ 174 (200)
+-+.++|.+++.+.|+++|+++.
T Consensus 43 ~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 43 LRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEECCHHHHHHHHHHCCCEEE
Confidence 55566888899999999999864
No 187
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.83 E-value=1.7e+02 Score=19.56 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=31.1
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECCCCCeEEEEE
Q 029044 150 RHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 197 (200)
Q Consensus 150 ~hi~f~v~dv~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPdGn~iEl~e 197 (200)
.|+.+.|.|++++.+..++ .|.+......+ ...++.-.++..+.+++
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-~~~~l~~~~~~~~~l~~ 49 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKEDR-RLAFFWVGGRGMLLLFD 49 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCCC-ceEEEEcCCCcEEEEEe
Confidence 4789999999999999974 68887653222 23445444445555544
No 188
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=30.13 E-value=1e+02 Score=22.58 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.1
Q ss_pred ceeEEEEEECCHHHHHHHHHH-CCCeEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDK-AGISYT 174 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~-~G~~~~ 174 (200)
++.|+++.|.|+++..+-..+ .|.+..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 468999999999999888876 798774
No 189
>PHA02754 hypothetical protein; Provisional
Probab=29.81 E-value=1.4e+02 Score=18.45 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeEEEEEe
Q 029044 160 SKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 198 (200)
Q Consensus 160 ~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~iEl~e~ 198 (200)
.++.++|.++|+-+.... ..+.-+.+...||..+|+.|-
T Consensus 21 RelkD~LSe~GiYi~RIkai~~SGdkIVVi~aD~I~i~ls~T 62 (67)
T PHA02754 21 RELKDILSEAGIYIDRIKAITTSGDKIVVITADAIKIELSET 62 (67)
T ss_pred HHHHHHHhhCceEEEEEEEEEecCCEEEEEEcceEEEEEEee
Confidence 456778888998764432 123345566678999999864
No 190
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.40 E-value=66 Score=15.65 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=8.9
Q ss_pred eEEEEECCCCCeE
Q 029044 181 PAIFTRDPDANAL 193 (200)
Q Consensus 181 ~~~~~~DPdGn~i 193 (200)
-...+.|++|++|
T Consensus 7 I~~i~~D~~G~lW 19 (24)
T PF07494_consen 7 IYSIYEDSDGNLW 19 (24)
T ss_dssp EEEEEE-TTSCEE
T ss_pred EEEEEEcCCcCEE
Confidence 3456789999887
No 191
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=28.80 E-value=36 Score=18.18 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=13.8
Q ss_pred EcCCHHHHHHHHHhccCC
Q 029044 86 LCENLERSLEFYQNILGL 103 (200)
Q Consensus 86 ~v~Dl~~s~~FY~~vLG~ 103 (200)
...|.++++.+|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 457899999999997743
No 192
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.78 E-value=85 Score=19.39 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=19.8
Q ss_pred eeEEEEEEC---CHHHHHHHHHHCCCeE
Q 029044 149 DRHTCIAIR---DVSKLKMILDKAGISY 173 (200)
Q Consensus 149 ~~hi~f~v~---dv~~~~~~l~~~G~~~ 173 (200)
..++.+++. .++++.+.|+++|+++
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 356778886 5778899999999875
No 193
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=28.66 E-value=62 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.9
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeEE
Q 029044 150 RHTCIAIRDVSKLKMILDKAGISYT 174 (200)
Q Consensus 150 ~hi~f~v~dv~~~~~~l~~~G~~~~ 174 (200)
.|+-++-+|++++.+.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 5788888899999999999998763
No 194
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=27.99 E-value=12 Score=21.79 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=18.5
Q ss_pred eceEeEEEEEcCCHHHHHHHHHhcc
Q 029044 77 VVSVHHVGILCENLERSLEFYQNIL 101 (200)
Q Consensus 77 i~~l~hv~l~v~Dl~~s~~FY~~vL 101 (200)
|..++-.++.+++.++..+||...|
T Consensus 9 igp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 9 IGPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred cCccccCCCccccccchhHHHHHHH
Confidence 3345556667788899999999854
No 195
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=27.79 E-value=1.2e+02 Score=23.74 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEE
Q 029044 157 RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 196 (200)
Q Consensus 157 ~dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~ 196 (200)
+.-+++.++|.++|++-.+.- .-+.+.-|+|..+|=+
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNF---tPv~l~~pe~V~V~~i 193 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNF---TPVRLQVPEGVIVENI 193 (211)
T ss_pred HHHHHHHHHHHHcCCceEEec---cceEecCCCCcEEEEe
Confidence 366788889999998876642 2367888888887643
No 196
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.28 E-value=1.9e+02 Score=19.12 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=20.2
Q ss_pred ceEeEEEEEcCCHHHHHHHHHhc--cCCEEee
Q 029044 78 VSVHHVGILCENLERSLEFYQNI--LGLEINE 107 (200)
Q Consensus 78 ~~l~hv~l~v~Dl~~s~~FY~~v--LG~~~~~ 107 (200)
.+..|+.+.|.|.+...+.+..+ .|.++..
T Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~ 89 (114)
T cd07261 58 GGGSELAFMVDDGAAVDALYAEWQAKGVKIIQ 89 (114)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHCCCeEec
Confidence 35789999998855555555432 7777764
No 197
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=26.49 E-value=2.5e+02 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=13.8
Q ss_pred eEEEEECCCCCeEEEEE
Q 029044 181 PAIFTRDPDANALEFTQ 197 (200)
Q Consensus 181 ~~~~~~DPdGn~iEl~e 197 (200)
+..|+.||+|.++....
T Consensus 121 ~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 121 RISFLIDADGKIEHVFD 137 (154)
T ss_pred eEEEEECCCCEEEEEEc
Confidence 45799999999888764
No 198
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=25.19 E-value=1.6e+02 Score=20.62 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCeE
Q 029044 157 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 193 (200)
Q Consensus 157 ~dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~i 193 (200)
.|++.+.+.|++.|+++.... ..++.++|.--+|.++
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 489999999999999996543 4457777766666544
No 199
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=3e+02 Score=20.67 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=36.7
Q ss_pred ceeEEEEEECCHHHHHHHHHHCCCeEEe--c--------------C-C-------CceEEEEECCCCCeEEEE
Q 029044 148 RDRHTCIAIRDVSKLKMILDKAGISYTL--S--------------K-S-------GRPAIFTRDPDANALEFT 196 (200)
Q Consensus 148 ~~~hi~f~v~dv~~~~~~l~~~G~~~~~--~--------------~-~-------g~~~~~~~DPdGn~iEl~ 196 (200)
+...+++.+++..+..+-.++.|.++.. + + . -.++.|+.|+||.+..++
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 3467888888888888888888888722 0 0 0 137789999999998877
No 200
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=24.35 E-value=1.4e+02 Score=21.37 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=31.6
Q ss_pred EECCHHHHHHHHHHCCCeEEecC------CCceEEEEECCCCCeEEEEEeC
Q 029044 155 AIRDVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 155 ~v~dv~~~~~~l~~~G~~~~~~~------~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
++.++...+.+|.++|- +.-++ +|.-.+...|.+|.+.|-..+.
T Consensus 23 Qik~Fn~~~~~L~~~G~-V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~ 72 (118)
T PRK10234 23 QISRFNRAFDTLCQQGR-VGVGRSSGRFKPRVVVALALDEQQRVVDTLFMK 72 (118)
T ss_pred HHHHHHHHHHHHHhcCc-eEEecccCccCCCeEEEEEECCCCcEEeeEEEc
Confidence 34578889999999985 42221 3556678899999999876654
No 201
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.26 E-value=3.3e+02 Score=20.86 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=47.0
Q ss_pred eeceEeEEEEEcCCHHHHHHHHHhccCCEEeeecCCCCCCceEEE------EEeCCeEEEEEecCCCCCCCCCCCCCCce
Q 029044 76 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW------LWVGAEMIHLMELPNPDPLSGRPEHGGRD 149 (200)
Q Consensus 76 ~i~~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~~~------l~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (200)
.-..++|+.|+|.+.+-+..|-...+..-..-.. +--.+...+- +.+++..+.+++.+=+.. ...|. .|.
T Consensus 36 t~~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~-n~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~-K~YP~--egW 111 (185)
T COG3102 36 TQYTADHIALRVHQEQTAKRWRRGLLQCGELLSE-NLINGRPICLIKLHQPLQVAHWQIDIIELPYPKN-KRYPH--EGW 111 (185)
T ss_pred cccccceeEEEeCcHHHHHHHHHHHHHHHHHhhh-hhcCCceEEEEEcCCcceecceEEEEEEccCCcC-CCCCC--cCc
Confidence 3446899999999999888876543322111000 0000111122 233456777777665543 22232 357
Q ss_pred eEEEEEEC-CHHHHHHH
Q 029044 150 RHTCIAIR-DVSKLKMI 165 (200)
Q Consensus 150 ~hi~f~v~-dv~~~~~~ 165 (200)
-||-|..+ +-+++..+
T Consensus 112 EHIEiVlP~~peel~~~ 128 (185)
T COG3102 112 EHIEIVLPGDPEELNAR 128 (185)
T ss_pred eeEEEEcCCChHHHHHH
Confidence 89999998 55544443
No 202
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=23.97 E-value=1.3e+02 Score=16.25 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=17.9
Q ss_pred cCCCceEEEEECCCCCeEEEEEeC
Q 029044 176 SKSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 176 ~~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
.+.|...-|-+|+.|++..+..+.
T Consensus 12 d~~G~~~~y~YD~~g~l~~~t~~~ 35 (38)
T PF05593_consen 12 DPDGRTTRYTYDAAGRLTSVTDPD 35 (38)
T ss_pred cCCCCEEEEEECCCCCEEEEECCC
Confidence 345666678899999998887554
No 203
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.53 E-value=1.7e+02 Score=17.32 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.9
Q ss_pred eEEEEEECC---HHHHHHHHHHCCCeEE
Q 029044 150 RHTCIAIRD---VSKLKMILDKAGISYT 174 (200)
Q Consensus 150 ~hi~f~v~d---v~~~~~~l~~~G~~~~ 174 (200)
.++.+.+.+ ++++.+.+++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 345556554 4588999999998764
No 204
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=23.41 E-value=1.4e+02 Score=16.23 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=14.4
Q ss_pred CCCceEEEEECCCCCeEEEEEeC
Q 029044 177 KSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 177 ~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
+.|...-|-+|..|++++...++
T Consensus 13 p~G~~~~~~YD~~Grl~~~tdp~ 35 (42)
T TIGR01643 13 ADGTTTRYTYDAAGRLVEITDAD 35 (42)
T ss_pred CCCCEEEEEECCCCCEEEEECCC
Confidence 34556666677777777666543
No 205
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=23.12 E-value=2.2e+02 Score=21.75 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEECCHHHHHHHHHHCCCeEEec
Q 029044 152 TCIAIRDVSKLKMILDKAGISYTLS 176 (200)
Q Consensus 152 i~f~v~dv~~~~~~l~~~G~~~~~~ 176 (200)
+.+..++.+++.+.|++.|+.++..
T Consensus 47 i~~~~~~~~~l~~~L~~~G~~ite~ 71 (174)
T PF10706_consen 47 IFVPREDQAELRALLKELGYRITET 71 (174)
T ss_dssp EEEEGGGHHHHHHHHHHTT-EEEEE
T ss_pred EEEEcchhHHHHHHHHHCCCEEEEe
Confidence 5555568999999999999987653
No 206
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=23.05 E-value=1.6e+02 Score=19.18 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=17.4
Q ss_pred EEEcCCHHHHHHHHHhccCCEEeee
Q 029044 84 GILCENLERSLEFYQNILGLEINEA 108 (200)
Q Consensus 84 ~l~v~Dl~~s~~FY~~vLG~~~~~~ 108 (200)
.....+-..|.++|+. |||+....
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3345788899999999 99998753
No 207
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=22.92 E-value=93 Score=22.39 Aligned_cols=86 Identities=10% Similarity=0.097 Sum_probs=48.1
Q ss_pred EeEEEEEcCCHHHHHHHHHhccCCEEeeecC------CCCCCceEE--EEEeCCeEEEEEecCCCCCCCCCCCCCCceeE
Q 029044 80 VHHVGILCENLERSLEFYQNILGLEINEARP------HDKLPYRGA--WLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 151 (200)
Q Consensus 80 l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~------~~~~~~~~~--~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~h 151 (200)
++-+.+.|++.+.+.+-.++ -||.+....- ..+++.... .+.-.+..+..+-.- ..+. ...-
T Consensus 42 FGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAF-------v~ek--~KAl 111 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAF-------VTEK--QKAL 111 (142)
T ss_pred cceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeee-------eecC--ceEE
Confidence 56678889999999999998 7888754211 000000000 000001111111000 0001 1234
Q ss_pred EEEEECCHHHHHHHHHHCCCeEEe
Q 029044 152 TCIAIRDVSKLKMILDKAGISYTL 175 (200)
Q Consensus 152 i~f~v~dv~~~~~~l~~~G~~~~~ 175 (200)
+-++++|++++...|+++|+.+..
T Consensus 112 li~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 112 LIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEhhHHHHHHHHHHHcCCeecC
Confidence 788999999999999999998754
No 208
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=22.60 E-value=2.5e+02 Score=19.56 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEEEEeC
Q 029044 161 KLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 199 (200)
Q Consensus 161 ~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl~e~~ 199 (200)
++.+.|++.|+. .+++|+.+|...+|-.+|+.
T Consensus 28 E~~a~lk~agi~-------nYSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 28 ELLALLKEAGIR-------NYSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred HHHHHHHHcCCc-------eeEEEecCCcccEEEEEEEc
Confidence 556666777664 36789999999999888875
No 209
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=22.56 E-value=98 Score=19.13 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=18.1
Q ss_pred eEeEEEEEc-CCHHHHHHHHHhccCCE
Q 029044 79 SVHHVGILC-ENLERSLEFYQNILGLE 104 (200)
Q Consensus 79 ~l~hv~l~v-~Dl~~s~~FY~~vLG~~ 104 (200)
++..+.+.| .+-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 466677776 555559999998 8875
No 210
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=22.04 E-value=2.6e+02 Score=18.78 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.1
Q ss_pred eEeEEEEEcCCHHHHHHHHHhccCCEEeee
Q 029044 79 SVHHVGILCENLERSLEFYQNILGLEINEA 108 (200)
Q Consensus 79 ~l~hv~l~v~Dl~~s~~FY~~vLG~~~~~~ 108 (200)
+-.|+.+.|.|++++.+=... .|.++...
T Consensus 68 ~~~~~~~~v~d~d~~~~~l~~-~G~~v~~~ 96 (122)
T cd08355 68 GTQGVYVVVDDVDAHYERARA-AGAEILRE 96 (122)
T ss_pred ceEEEEEEECCHHHHHHHHHH-CCCEEeeC
Confidence 456899999999888776665 68887753
No 211
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=21.82 E-value=2.9e+02 Score=19.39 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=23.4
Q ss_pred eEeEEEEEc-CCHHHHHHHHHhccCCEEeeecC
Q 029044 79 SVHHVGILC-ENLERSLEFYQNILGLEINEARP 110 (200)
Q Consensus 79 ~l~hv~l~v-~Dl~~s~~FY~~vLG~~~~~~~~ 110 (200)
++..+.+.| .+-..+++||+. |||+......
T Consensus 110 ~~~~i~~~v~~~N~~~i~~~~~-~GF~~~g~~~ 141 (155)
T PF13420_consen 110 GIHKIYLEVFSSNEKAINFYKK-LGFEEEGELK 141 (155)
T ss_dssp T-CEEEEEEETT-HHHHHHHHH-TTEEEEEEEE
T ss_pred CeEEEEEEEecCCHHHHHHHHh-CCCEEEEEEe
Confidence 566777664 778999999999 9999987654
No 212
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.58 E-value=98 Score=18.84 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHCCCeE
Q 029044 158 DVSKLKMILDKAGISY 173 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~ 173 (200)
|.+++.+.|+++|+++
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 6789999999999863
No 213
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=21.49 E-value=1.1e+02 Score=18.57 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=11.0
Q ss_pred eEEEEECCCCCeEEEE
Q 029044 181 PAIFTRDPDANALEFT 196 (200)
Q Consensus 181 ~~~~~~DPdGn~iEl~ 196 (200)
..|.|+|.+|+++.+.
T Consensus 10 s~F~FYDen~~lVrv~ 25 (54)
T PF12142_consen 10 SSFLFYDENGQLVRVK 25 (54)
T ss_dssp -EEEEE-TTS-EEEEE
T ss_pred CeeEEECCCCCEEEEE
Confidence 3688999999999875
No 214
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=21.03 E-value=1.9e+02 Score=16.89 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=12.7
Q ss_pred EEEEECCCCCeEEEEE
Q 029044 182 AIFTRDPDANALEFTQ 197 (200)
Q Consensus 182 ~~~~~DPdGn~iEl~e 197 (200)
...+.||||..+.|.-
T Consensus 30 sY~y~~pdG~~~~V~Y 45 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTY 45 (52)
T ss_pred EEEEECCCCCEEEEEE
Confidence 4678899999888764
No 215
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.81 E-value=2.5e+02 Score=18.17 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCeEEecC---CC---ceEEEEECCCCCeEE
Q 029044 160 SKLKMILDKAGISYTLSK---SG---RPAIFTRDPDANALE 194 (200)
Q Consensus 160 ~~~~~~l~~~G~~~~~~~---~g---~~~~~~~DPdGn~iE 194 (200)
-.+...|...|+.+...+ .| .-.||++|.+|..++
T Consensus 16 ~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 16 FDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 455667778898885432 22 356999999998763
No 216
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.80 E-value=2e+02 Score=21.80 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=27.2
Q ss_pred EECCHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCe
Q 029044 155 AIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 192 (200)
Q Consensus 155 ~v~dv~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdGn~ 192 (200)
--.|++.+.+.|++.|+++..+. ..++.++|.--+|..
T Consensus 113 G~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 113 ADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 33589999999999999997654 234666665555554
No 217
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=20.43 E-value=2.4e+02 Score=17.89 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCeEEE
Q 029044 158 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 195 (200)
Q Consensus 158 dv~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdGn~iEl 195 (200)
+..++.+.|++.|+.....+ +.-..+..|||..+-+
T Consensus 8 ~~ke~ik~Le~~Gf~~vrqk--GSH~q~kHp~~~~vtV 43 (66)
T COG1724 8 KAKEVIKALEKDGFQLVRQK--GSHRQYKHPDGGRVTV 43 (66)
T ss_pred CHHHHHHHHHhCCcEEEEee--cceeEEEcCCCCEEEe
Confidence 45678888999998876554 3356777888877654
Done!