BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029048
         (200 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
          Length = 230

 Score =  223 bits (569), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 138/190 (72%), Gaps = 27/190 (14%)

Query: 36  PSRAHSRSILTVRAGATDSEYSSKRSSSNEPRE----TIMLPGCDYNHWLIVMEFPKDPA 91
           P ++ S +  TVRA  TD EYSS+R+++N        TIMLPGCDYNHWLIVMEFPKDPA
Sbjct: 42  PIKSRSAAYPTVRA-LTDGEYSSRRNNNNNNSGEERETIMLPGCDYNHWLIVMEFPKDPA 100

Query: 92  PTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFK-------- 143
           PTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFK        
Sbjct: 101 PTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWV 160

Query: 144 --------------GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTR 189
                         GDKYVNGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R  
Sbjct: 161 LPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQRRP 220

Query: 190 QAAGQSESAS 199
           +     ES++
Sbjct: 221 KQEATPESST 230


>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis
           thaliana GN=At3g15000 PE=1 SV=1
          Length = 395

 Score = 87.0 bits (214), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 45  LTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNT 104
           L+ +A ++     +   S+  P+ETI+L GCD+ HWL+V+E P+   PTR+++I++Y+ T
Sbjct: 65  LSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQG-EPTRDEIIDSYIKT 123

Query: 105 LATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFK 143
           LA ++GS +EA+  +Y+ ST  Y  F   VSE+ S K K
Sbjct: 124 LAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLK 162


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.126    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,628,762
Number of Sequences: 539616
Number of extensions: 2776828
Number of successful extensions: 5818
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5811
Number of HSP's gapped (non-prelim): 9
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)