Query 029049
Match_columns 200
No_of_seqs 124 out of 131
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 10:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpd_A Serine/threonine-protei 33.6 36 0.0012 29.7 3.9 92 32-139 290-408 (440)
2 3g2b_A Coenzyme PQQ synthesis 22.8 63 0.0021 23.3 3.0 32 9-40 55-86 (95)
3 1qjt_A EH1, epidermal growth f 20.2 41 0.0014 23.2 1.4 43 32-77 45-98 (99)
4 3ddl_A Xanthorhodopsin; carote 19.7 46 0.0016 28.2 1.9 44 89-137 18-61 (273)
5 3olj_A Ribonucleoside-diphosph 19.3 52 0.0018 27.6 2.1 37 93-134 104-140 (286)
6 2o1z_A Ribonucleotide reductas 18.1 55 0.0019 27.9 2.0 35 95-134 130-164 (311)
7 3nrw_A Phage integrase/site-sp 17.8 1.1E+02 0.0037 20.8 3.2 36 7-42 4-44 (117)
8 2diq_A Tudor and KH domain-con 16.8 1.1E+02 0.0039 21.7 3.2 38 22-59 7-50 (110)
9 2yqy_A TT2238, hypothetical pr 16.5 96 0.0033 21.9 2.7 23 10-32 104-126 (169)
10 3tt2_A GCN5-related N-acetyltr 16.3 1.5E+02 0.0051 22.4 3.9 20 21-40 95-114 (330)
No 1
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=33.56 E-value=36 Score=29.68 Aligned_cols=92 Identities=13% Similarity=0.235 Sum_probs=52.8
Q ss_pred HHHHHhhh---------cCCcCCcceeeecCCCCceeeeCCCCCCCCCCCCC-----------cCCccccC------CCc
Q 029049 32 TEVEEFYH---------QCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEP-----------ALGINFAR------DGM 85 (200)
Q Consensus 32 ~Dve~Fy~---------~CDPekenLcLYG~p~~~WeV~lPaeevPpelPEP-----------alGINfaR------DgM 85 (200)
.|+++||+ -+|---.|+.+.=.++|+|.+.+==+-||.-...+ |++||..+ +.+
T Consensus 290 ~d~~~~~rr~vfn~ligN~D~H~KN~s~l~~~~g~~~LaPaYDl~~~~~~~~~~~~~~~~~~lAm~~~g~~~~~~~~~~i 369 (440)
T 3tpd_A 290 KDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKI 369 (440)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCGGGCEEEECGGGCEEECCCCCCCCSGGGTTSSSCCGGGCEEEEEEEETTEEEEEGGGC
T ss_pred HHHHHHHHHHHhhHhhcCCcCCccceEEEEcCCCceEECchhhcccccccCCcccCCCcchhhcccccCccCccCchhhc
Confidence 57788876 35666799997666889999994444444332222 34444333 123
Q ss_pred cccchhhhhhhhcchHHHHHHHHhhhccCCChhh-hHHHHHhhccCCceeeeeeC
Q 029049 86 QEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSD-RKRLFNMINELPTIFEVVTG 139 (200)
Q Consensus 86 ~rkdWLslVAvHSDsWLlsvAfy~gar~gF~~~~-R~rLf~mIN~lpTv~Evv~g 139 (200)
.+++|++ +|.++|+.+.. +..|-.++..+|.+.+.|..
T Consensus 370 ~~~~~~~----------------~a~~~gl~~~~~~~ii~~~~~~~~~~~~~~~~ 408 (440)
T 3tpd_A 370 YPRHFLA----------------TAKVLRFPEVQMHEILSDFARMIPAALDNVKT 408 (440)
T ss_dssp CHHHHHH----------------HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHH----------------HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 24566777654 44455566666666665543
No 2
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=22.84 E-value=63 Score=23.29 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=23.8
Q ss_pred CCCHHHHHhhhhhhhhHHHHHHhHHHHHhhhc
Q 029049 9 PRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQ 40 (200)
Q Consensus 9 prTvE~iF~Df~~RR~glirALT~Dve~Fy~~ 40 (200)
.|||++|-.....+=..-...+..||.+|.++
T Consensus 55 ~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~ 86 (95)
T 3g2b_A 55 TQSLAQIAQTLAAEFDADASEIETDVIELTTT 86 (95)
T ss_dssp SSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 68999998777766654445677899888763
No 3
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.15 E-value=41 Score=23.24 Aligned_cols=43 Identities=9% Similarity=0.225 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCcCCccee----------e-ecCCCCceeeeCCCCCCCCCCCCCcCC
Q 029049 32 TEVEEFYHQCDPEKENLC----------L-YGFPSEQWEVNLPAEEVPPELPEPALG 77 (200)
Q Consensus 32 ~Dve~Fy~~CDPekenLc----------L-YG~p~~~WeV~lPaeevPpelPEPalG 77 (200)
.++++.++.+|.+....- + +..-+| ..+|.+.+|..+|-|.+|
T Consensus 45 ~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g---~~~~~~~l~~~~p~p~~~ 98 (99)
T 1qjt_A 45 LILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNG---LEVSLSSLSLAVPPPRFH 98 (99)
T ss_dssp HHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTT---CCSSGGGCSSCCCCCSSC
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcC---CCCChhhccCCCCCCCCC
Confidence 477888888887654211 0 011122 257888899999999876
No 4
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=19.65 E-value=46 Score=28.18 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=31.9
Q ss_pred chhhhhhhhcchHHHHHHHHhhhccCCChhhhHHHHHhhccCCceeeee
Q 029049 89 DWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVV 137 (200)
Q Consensus 89 dWLslVAvHSDsWLlsvAfy~gar~gF~~~~R~rLf~mIN~lpTv~Evv 137 (200)
|||.++.+ +=+++..||+..+. ....++|+|-.|.-+.|..-.+
T Consensus 18 ~~lw~~~a---~m~~atl~F~~~~~--~v~~~~R~~~~v~~lit~IAai 61 (273)
T 3ddl_A 18 NMFSFTVA---TMTASFVFFVLARN--NVAPKYRISMMVSALVVFIAGY 61 (273)
T ss_dssp HHHHHHHH---HHHHHHHHHHHGGG--GSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHc--cCCcceehhhHHHHHHHHHHHH
Confidence 67766655 44566678888777 7888899999888887765443
No 5
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=19.32 E-value=52 Score=27.60 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=28.8
Q ss_pred hhhhhcchHHHHHHHHhhhccCCChhhhHHHHHhhccCCcee
Q 029049 93 LVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIF 134 (200)
Q Consensus 93 lVAvHSDsWLlsvAfy~gar~gF~~~~R~rLf~mIN~lpTv~ 134 (200)
.=+|||.+.-.-+--+. -|..+|.++|+.|.+.|.|-
T Consensus 104 ~E~iHs~sYs~il~tl~-----~d~~e~~~~f~~~~~~p~l~ 140 (286)
T 3olj_A 104 MENIHSEMYSLLIDTYI-----KDPKEREFLFNAIETMPCVK 140 (286)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCHHHHHHHHTHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCHHHH
Confidence 35799999866665443 38889999999999999863
No 6
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=18.06 E-value=55 Score=27.91 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=27.5
Q ss_pred hhhcchHHHHHHHHhhhccCCChhhhHHHHHhhccCCcee
Q 029049 95 AVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIF 134 (200)
Q Consensus 95 AvHSDsWLlsvAfy~gar~gF~~~~R~rLf~mIN~lpTv~ 134 (200)
||||.+.-.-+-- ++-|..+|.++|..|.+.|.|.
T Consensus 130 ~iHs~sYs~il~t-----l~~d~~e~~~~f~~~~~~p~l~ 164 (311)
T 2o1z_A 130 NIHSETYSLLIDN-----YIKDEKERMNLFHAIENIPAVK 164 (311)
T ss_dssp HHHHHHHHHHHHH-----HCCCHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHH-----HCCCHHHHHHHHHHHhcCHHHH
Confidence 8999987665544 3338889999999999999874
No 7
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=17.78 E-value=1.1e+02 Score=20.76 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=28.4
Q ss_pred CCCCCHHHHHhhhhh-----hhhHHHHHHhHHHHHhhhcCC
Q 029049 7 YNPRTVEEVFGDFKG-----RRAGMIKALTTEVEEFYHQCD 42 (200)
Q Consensus 7 ~~prTvE~iF~Df~~-----RR~glirALT~Dve~Fy~~CD 42 (200)
+.+-|+++.+++|-. +...=+++-..|+..|...|.
T Consensus 4 ~~~~t~~~~~~~fl~~l~~~~s~~Ti~~Y~~~l~~f~~~l~ 44 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAE 44 (117)
T ss_dssp CCCCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 356799998888864 445668999999999998874
No 8
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=16.76 E-value=1.1e+02 Score=21.66 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=26.5
Q ss_pred hhhHHHHHHhHHHHHhhhcCC-----cCCcceeeecCC-CCcee
Q 029049 22 RRAGMIKALTTEVEEFYHQCD-----PEKENLCLYGFP-SEQWE 59 (200)
Q Consensus 22 RR~glirALT~Dve~Fy~~CD-----PekenLcLYG~p-~~~We 59 (200)
+|..-+..|+.+..+||+.-. |....+|+-=++ |+.|-
T Consensus 7 ~~~~~l~~L~~~m~~~y~~~~~~~~~~~~G~~c~a~~~~d~~wy 50 (110)
T 2diq_A 7 GRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWY 50 (110)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCCCCCCCTTCEEEECCTTTCSCE
T ss_pred hHHHHHHHHHHHHHHHHccCCCCCCCCCCCCEEEEEECCCCeEE
Confidence 456667889999999998543 334557776554 67774
No 9
>2yqy_A TT2238, hypothetical protein TTHA0303; four-helix-bundle, NPPSFA, national project on protein struc functional analyses; 2.00A {Thermus thermophilus}
Probab=16.48 E-value=96 Score=21.91 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCHHHHHhhhhhhhhHHHHHHhH
Q 029049 10 RTVEEVFGDFKGRRAGMIKALTT 32 (200)
Q Consensus 10 rTvE~iF~Df~~RR~glirALT~ 32 (200)
.+++++-..|..-|+.++..|..
T Consensus 104 ~~~~~ll~~~~~~~~~~~~~l~~ 126 (169)
T 2yqy_A 104 LSLEEVLALLDRARAFLLEEVAK 126 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999888888888776654
No 10
>3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus}
Probab=16.30 E-value=1.5e+02 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.1
Q ss_pred hhhhHHHHHHhHHHHHhhhc
Q 029049 21 GRRAGMIKALTTEVEEFYHQ 40 (200)
Q Consensus 21 ~RR~glirALT~Dve~Fy~~ 40 (200)
-||.||-++|..-+.++.++
T Consensus 95 ~rg~Gig~~Ll~~~~~~~~~ 114 (330)
T 3tt2_A 95 FRGMGLGTWLVQWGEEWIQD 114 (330)
T ss_dssp STTSSHHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHH
Confidence 47778888888888776653
Done!