Query 029049
Match_columns 200
No_of_seqs 124 out of 131
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 10:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029049.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029049hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1otfa_ d.80.1.1 (A:) 4-oxaloc 41.6 15 0.0011 22.3 3.8 38 22-60 15-52 (59)
2 d2diqa1 b.34.9.1 (A:8-104) Tud 41.1 13 0.00096 23.8 3.6 34 26-59 4-43 (97)
3 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 30.9 14 0.001 24.5 2.4 36 23-59 17-52 (76)
4 d1qgja_ a.93.1.1 (A:) Plant pe 29.2 6.3 0.00046 31.7 0.4 31 68-98 131-166 (300)
5 d1md8a2 g.18.1.1 (A:358-433) C 27.2 16 0.0011 23.2 2.1 30 40-69 31-72 (76)
6 d1bgpa_ a.93.1.1 (A:) Plant pe 23.3 10 0.00076 30.3 0.7 34 65-98 142-180 (309)
7 d1s0ya_ d.80.1.1 (A:) Trans-3- 22.5 47 0.0034 20.2 3.7 38 22-60 15-52 (62)
8 d1lrza3 d.108.1.4 (A:166-244,A 21.4 38 0.0028 23.3 3.4 39 10-48 1-50 (182)
9 d1vfga1 a.173.1.1 (A:137-351) 20.6 17 0.0013 25.6 1.4 24 106-129 20-45 (215)
10 d1sxja2 c.37.1.20 (A:295-547) 20.3 51 0.0037 23.1 3.9 43 7-54 8-61 (253)
No 1
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=41.65 E-value=15 Score=22.35 Aligned_cols=38 Identities=8% Similarity=0.314 Sum_probs=32.6
Q ss_pred hhhHHHHHHhHHHHHhhhcCCcCCcceeeecCCCCceee
Q 029049 22 RRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60 (200)
Q Consensus 22 RR~glirALT~Dve~Fy~~CDPekenLcLYG~p~~~WeV 60 (200)
.+..|+++||.-+.+... |+|+.=..-++=.|.+.|-+
T Consensus 15 qK~~l~~~it~~~~~~~g-~~~~~v~V~i~E~~~~nw~~ 52 (59)
T d1otfa_ 15 QKETLIRQVSEAMANSLD-APLERVRVLITEMPKNHFGI 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCGGGCEEEEEEECGGGEEE
T ss_pred HHHHHHHHHHHHHHHHhC-cCcccEEEEEEEeChhhEEE
Confidence 478899999999888877 89998888888888888876
No 2
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.11 E-value=13 Score=23.84 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=25.8
Q ss_pred HHHHHhHHHHHhhhcCC-----cCCcceeeecCC-CCcee
Q 029049 26 MIKALTTEVEEFYHQCD-----PEKENLCLYGFP-SEQWE 59 (200)
Q Consensus 26 lirALT~Dve~Fy~~CD-----PekenLcLYG~p-~~~We 59 (200)
=+..|+.++.+||.+.. |....+|+.-++ ||.|-
T Consensus 4 ~l~~L~~~l~~~y~~~~~~~~~~~~G~~~~a~~~~d~~wy 43 (97)
T d2diqa1 4 QLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWY 43 (97)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCCCCTTCEEEECCTTTCSCE
T ss_pred HHHHHHHHHHHHHccCCCCcCCCCCCCEEEEEECCCCeEE
Confidence 46789999999998644 444678888775 68884
No 3
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=30.91 E-value=14 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.336 Sum_probs=32.8
Q ss_pred hhHHHHHHhHHHHHhhhcCCcCCcceeeecCCCCcee
Q 029049 23 RAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWE 59 (200)
Q Consensus 23 R~glirALT~Dve~Fy~~CDPekenLcLYG~p~~~We 59 (200)
.+.|++++|.-+-+-+. |.|+.-..-+.=.|.+.|+
T Consensus 17 K~~L~~~iT~a~~~~lg-~~~e~V~V~i~Ev~~enW~ 52 (76)
T d1gyxa_ 17 KAALAADITDVIIRHLN-SKDSSISIALQQIQPESWQ 52 (76)
T ss_dssp HHHHHHHHHHHHHHHHT-CCGGGCEEEEEECCGGGHH
T ss_pred HHHHHHHHHHHHHHHhC-cCCCeEEEEEEECCHHhhh
Confidence 68899999998888887 9999999999999999994
No 4
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]}
Probab=29.17 E-value=6.3 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=26.7
Q ss_pred CCCCCCCcCCc-----cccCCCccccchhhhhhhhc
Q 029049 68 PPELPEPALGI-----NFARDGMQEKDWLSLVAVHS 98 (200)
Q Consensus 68 PpelPEPalGI-----NfaRDgM~rkdWLslVAvHS 98 (200)
+..||.|..+| +|+|-||..+|...|..-|+
T Consensus 131 ~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGAHT 166 (300)
T d1qgja_ 131 ANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHT 166 (300)
T ss_dssp HTTSCCTTSCHHHHHHHHHTTTCCHHHHHHHHGGGG
T ss_pred ccCCCCCCCCHHHHHHHHHHcCCchhhhhhhccccc
Confidence 34688888876 59999999999999999997
No 5
>d1md8a2 g.18.1.1 (A:358-433) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.23 E-value=16 Score=23.23 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=20.4
Q ss_pred cCCcCCcce------eeec------CCCCceeeeCCCCCCCC
Q 029049 40 QCDPEKENL------CLYG------FPSEQWEVNLPAEEVPP 69 (200)
Q Consensus 40 ~CDPekenL------cLYG------~p~~~WeV~lPaeevPp 69 (200)
+|++++..+ +|=| ..||+|.=..|.-++|.
T Consensus 31 ~C~~GY~~~~~~~~~~l~G~~~~tC~~~G~Ws~~~p~C~~~~ 72 (76)
T d1md8a2 31 YCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPR 72 (76)
T ss_dssp EECTTTEEECC--------CCEEEECTTSSEECSSCCSSCCC
T ss_pred EecCCccccccccceeecccceeeecCCCcCCCCCCCccCCC
Confidence 699988433 4444 48999999988877764
No 6
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]}
Probab=23.32 E-value=10 Score=30.29 Aligned_cols=34 Identities=24% Similarity=0.529 Sum_probs=29.5
Q ss_pred CCCCCCCCCCcCCc-----cccCCCccccchhhhhhhhc
Q 029049 65 EEVPPELPEPALGI-----NFARDGMQEKDWLSLVAVHS 98 (200)
Q Consensus 65 eevPpelPEPalGI-----NfaRDgM~rkdWLslVAvHS 98 (200)
..++..||.|..++ .|+|-||..+|...|.+-|+
T Consensus 142 ~~~~~~lP~p~~~~~~l~~~F~~~G~~~~e~VALsGAHT 180 (309)
T d1bgpa_ 142 QDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHT 180 (309)
T ss_dssp HHHHHHSCCTTCCHHHHHHHHHHTTCCHHHHHHHGGGGG
T ss_pred ccccccCCCCcCCHHHHHHHHHHcCCChhhheeeeeecc
Confidence 34566799999998 59999999999999999886
No 7
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=22.54 E-value=47 Score=20.16 Aligned_cols=38 Identities=8% Similarity=-0.026 Sum_probs=28.9
Q ss_pred hhhHHHHHHhHHHHHhhhcCCcCCcceeeecCCCCceee
Q 029049 22 RRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60 (200)
Q Consensus 22 RR~glirALT~Dve~Fy~~CDPekenLcLYG~p~~~WeV 60 (200)
.+..|+++||.-+.+... |+++.-..-+.=+|-+.|-+
T Consensus 15 qK~~l~~~it~~~~~~~g-~~~e~v~V~i~E~~~~nw~~ 52 (62)
T d1s0ya_ 15 QKRALSAGLLRVISEATG-EPRENIFFVIREGSGINFVE 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCGGGCEEEEEEECGGGEEE
T ss_pred HHHHHHHHHHHHHHHHhC-cCcccEEEEEEEeChHHeEE
Confidence 478899999999988887 77777666666666666654
No 8
>d1lrza3 d.108.1.4 (A:166-244,A:310-412) Methicillin resistance protein FemA {Staphylococcus aureus [TaxId: 1280]}
Probab=21.44 E-value=38 Score=23.30 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=23.4
Q ss_pred CCHHHHHhhhhhh-hhHHHHHHhH----------HHHHhhhcCCcCCcce
Q 029049 10 RTVEEVFGDFKGR-RAGMIKALTT----------EVEEFYHQCDPEKENL 48 (200)
Q Consensus 10 rTvE~iF~Df~~R-R~glirALT~----------Dve~Fy~~CDPekenL 48 (200)
+|.|||++.|+.+ |..|=||+-. |++.||+.-.--.+..
T Consensus 1 ks~del~~~~~~~~Rr~Irka~k~gv~i~~~~~~~l~~f~~l~~~~~~r~ 50 (182)
T d1lrza3 1 KTADDIIKNMDGLRKRNTKKVKKNGVKVRFLSEEELPIFRSFMEDTSESK 50 (182)
T ss_dssp CCHHHHHHTSCHHHHHHHHHHHTSSCEEEECCGGGHHHHHHHC-------
T ss_pred CCHHHHHHhcCHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHhc
Confidence 5889999999754 5566677753 6777777655444433
No 9
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
Probab=20.63 E-value=17 Score=25.58 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=16.4
Q ss_pred HHHhhhccCCC--hhhhHHHHHhhcc
Q 029049 106 AFYFGARFGFD--KSDRKRLFNMINE 129 (200)
Q Consensus 106 Afy~gar~gF~--~~~R~rLf~mIN~ 129 (200)
|+-|+|||||. .+..+.+-+++|.
T Consensus 20 a~RF~ar~gf~i~~~T~~~i~~~~~~ 45 (215)
T d1vfga1 20 ALRFAGRLNFKLSRSTEKLLKQAVNL 45 (215)
T ss_dssp HHHHHHHHTCEECHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHc
Confidence 67888998876 5555556666554
No 10
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.28 E-value=51 Score=23.10 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCCCHHHHHhhhhhhhhHHHHHHhHHHHHhh-----------hcCCcCCcceeeecCC
Q 029049 7 YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFY-----------HQCDPEKENLCLYGFP 54 (200)
Q Consensus 7 ~~prTvE~iF~Df~~RR~glirALT~Dve~Fy-----------~~CDPekenLcLYG~p 54 (200)
|.|+|. +|+-+. ...++.|..-+..+- ...-+..-+|+|||.|
T Consensus 8 y~P~~~----~dlig~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPp 61 (253)
T d1sxja2 8 YAPTNL----QQVCGN-KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 61 (253)
T ss_dssp TCCSSG----GGCCSC-HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECST
T ss_pred cCCCCH----HHhcCC-HHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCC
Confidence 567774 444443 334556655554431 1233445689999965
Done!