Query 029051
Match_columns 200
No_of_seqs 90 out of 92
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyk_A Oxygen-evolving enhance 100.0 8.1E-50 2.8E-54 325.4 15.2 137 64-200 6-149 (149)
2 3zsu_A TLL2057 protein, cyanoq 99.9 7.8E-24 2.7E-28 169.2 12.5 102 98-199 25-126 (130)
3 3ls0_A SLL1638 protein, PSBQ; 99.9 1.6E-23 5.4E-28 168.0 13.2 101 99-199 28-129 (133)
4 3rfy_A Peptidyl-prolyl CIS-tra 95.8 0.022 7.5E-07 51.9 7.6 111 80-197 34-147 (369)
5 3us6_A Histidine-containing ph 71.2 25 0.00086 27.4 8.6 40 160-199 91-130 (153)
6 4ani_A Protein GRPE; chaperone 63.4 66 0.0023 27.0 10.2 52 149-200 102-157 (213)
7 3r6n_A Desmoplakin; spectrin r 60.7 53 0.0018 30.1 9.8 105 89-197 333-447 (450)
8 2w6b_A RHO guanine nucleotide 47.7 19 0.00066 24.7 3.5 51 116-166 2-54 (56)
9 1yke_B RNA polymerase II holoe 40.5 1.1E+02 0.0038 24.1 7.5 58 94-174 50-113 (151)
10 2js5_A Uncharacterized protein 39.2 45 0.0015 23.8 4.5 44 128-172 14-57 (71)
11 1ykh_B RNA polymerase II holoe 38.0 1.3E+02 0.0046 23.0 7.6 58 93-173 49-112 (132)
12 1yvi_A Histidine-containing ph 36.9 1.4E+02 0.0046 22.7 8.6 41 159-199 91-131 (149)
13 3csx_A Putative uncharacterize 35.7 52 0.0018 24.0 4.4 44 128-172 26-69 (81)
14 2ck3_A ATP synthase subunit al 32.7 77 0.0026 29.8 6.2 78 80-164 423-506 (510)
15 3bpv_A Transcriptional regulat 32.2 81 0.0028 22.0 5.1 31 140-170 108-138 (138)
16 3mab_A Uncharacterized protein 31.3 1.2E+02 0.004 22.1 5.8 26 136-161 54-84 (93)
17 1dkg_A Nucleotide exchange fac 30.9 1.7E+02 0.0057 23.9 7.4 69 127-200 61-138 (197)
18 1q90_R Cytochrome B6-F complex 30.7 39 0.0013 22.3 2.8 20 38-58 6-25 (49)
19 2c5k_T Syntaxin TLG1, T-snare 30.6 84 0.0029 22.9 5.0 54 122-175 8-61 (95)
20 3a6m_A Protein GRPE, HSP-70 co 29.9 1.6E+02 0.0055 23.7 7.0 74 126-200 40-115 (177)
21 4b9q_A Chaperone protein DNAK; 28.3 3.6E+02 0.012 24.9 12.3 69 92-167 505-577 (605)
22 2rpa_A Katanin P60 ATPase-cont 28.1 99 0.0034 22.0 4.8 36 164-199 14-49 (78)
23 2r9v_A ATP synthase subunit al 27.6 1E+02 0.0036 29.0 6.2 79 79-164 427-511 (515)
24 3fyq_A CG6831-PA (talin); 5-he 25.4 3E+02 0.01 23.0 8.3 75 119-194 39-119 (199)
25 1wfd_A Hypothetical protein 15 25.1 1E+02 0.0035 22.0 4.5 40 154-196 10-49 (93)
26 2pv7_A T-protein [includes: ch 24.5 1.3E+02 0.0044 24.9 5.7 31 102-132 240-270 (298)
27 1fx0_A ATP synthase alpha chai 24.1 1.5E+02 0.0051 27.9 6.5 81 79-166 415-501 (507)
28 2j8p_A Cleavage stimulation fa 23.7 44 0.0015 22.2 2.0 22 143-164 23-44 (49)
29 2j8w_A Cytochrome C'; heme, ir 23.5 1.5E+02 0.0053 21.9 5.4 41 150-190 77-117 (129)
30 2p06_A Hypothetical protein AF 23.0 59 0.002 24.4 2.9 30 107-136 66-95 (114)
31 3bqs_A Uncharacterized protein 23.0 1.5E+02 0.005 21.5 5.1 68 91-162 9-85 (93)
32 1wv8_A TT1413, hypothetical pr 22.9 57 0.0019 23.2 2.7 28 88-115 26-53 (73)
33 3s2w_A Transcriptional regulat 22.3 2.1E+02 0.0072 20.6 6.0 30 140-169 129-158 (159)
34 2ykz_A Cytochrome C'; electron 21.8 1.6E+02 0.0056 21.7 5.3 45 146-190 68-114 (127)
35 3vr4_A V-type sodium ATPase ca 21.4 3.8E+02 0.013 25.8 8.8 80 85-169 503-591 (600)
36 3nrv_A Putative transcriptiona 20.8 2.1E+02 0.0073 20.1 5.6 30 140-169 119-148 (148)
37 2pq4_B Periplasmic nitrate red 20.7 68 0.0023 19.6 2.4 14 41-54 3-16 (35)
38 3kra_B Geranyl diphosphate syn 20.0 3.9E+02 0.013 22.4 10.1 73 121-195 167-246 (274)
No 1
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=100.00 E-value=8.1e-50 Score=325.43 Aligned_cols=137 Identities=24% Similarity=0.430 Sum_probs=122.0
Q ss_pred CCCCCCCCccccc------cccccchhh-hhccccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhh
Q 029051 64 GIGSSSGASVALA------ESWGTRSFL-KERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYL 136 (200)
Q Consensus 64 ~i~~~~~~p~~l~------~~~~tr~~l-k~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~L 136 (200)
+|||||||+++|+ |++++++++ |||||+|++||+||++||+++|++|++|++||++++|+|||+|||+|+|||
T Consensus 6 ~~~~~~~~~~~~~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~~~~~L 85 (149)
T 1vyk_A 6 VVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYL 85 (149)
T ss_dssp ECCCCCCC--------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhHHHH
Confidence 7999999999994 999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHHhhC
Q 029051 137 SQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200 (200)
Q Consensus 137 r~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l~ 200 (200)
||||++||+++|+++|+++++||++||++|++||+|||.||.+++++||++|+++||+||++||
T Consensus 86 r~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l~ 149 (149)
T 1vyk_A 86 RYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 149 (149)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 2
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=99.91 E-value=7.8e-24 Score=169.25 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCCC
Q 029051 98 DAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPK 177 (200)
Q Consensus 98 eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~Kn 177 (200)
.=+.+|.+.+++|.+|+.+|++++|.+||++||++.|.||+||++|+++|++.+||++++|+++||++|++||.|++.+|
T Consensus 25 ~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n 104 (130)
T 3zsu_A 25 DYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDS 104 (130)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34789999999999999999999999999999999999999999999996555666999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029051 178 VYESYLYYEKALKNLDDIVAMF 199 (200)
Q Consensus 178 ~~~a~~~Y~~tv~~LdevLa~l 199 (200)
...+++.|++++++||.||+.|
T Consensus 105 ~~~a~k~Y~~a~adfdafl~li 126 (130)
T 3zsu_A 105 VTVAQEGFREAEADFKAYLNSL 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999875
No 3
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=99.90 E-value=1.6e-23 Score=168.04 Aligned_cols=101 Identities=18% Similarity=0.298 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHH-hHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCCC
Q 029051 99 AVARIKQTAEGMHS-LREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPK 177 (200)
Q Consensus 99 A~~RIk~~A~~L~~-lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~Kn 177 (200)
=+.+|.+.+++|.+ |+.+|++++|.+||++||++.|.||+||++|+++|++.+||++++|+++||++|++||.|++.+|
T Consensus 28 y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n 107 (133)
T 3ls0_A 28 YVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRN 107 (133)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999 99999999999999999999999999999999996544555999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 029051 178 VYESYLYYEKALKNLDDIVAMF 199 (200)
Q Consensus 178 ~~~a~~~Y~~tv~~LdevLa~l 199 (200)
...+++.|++++++||.||+.|
T Consensus 108 ~~~a~k~Y~~a~adfdafl~li 129 (133)
T 3ls0_A 108 GSQAKIQYQEALADFDSFLNLL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999875
No 4
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=95.81 E-value=0.022 Score=51.93 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=89.6
Q ss_pred ccchhhhhccccCCCChHHHHHHHHHHHHHHHHhHHHhhh---hcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHH
Q 029051 80 GTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDR---MAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYV 156 (200)
Q Consensus 80 ~tr~~lk~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~---~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~ 156 (200)
+-+.-||.-+=+... .||+--+.|..+-++|.- +.|.-+.++++.-+.-|..+=+.|+.+.|.++|.+..
T Consensus 34 ~~~a~lr~alp~~~~-------~~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~ 106 (369)
T 3rfy_A 34 DPEALLRYALPIDNK-------AIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGN 106 (369)
T ss_dssp CHHHHHHHHSCCCCH-------HHHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHH
T ss_pred CHHHHHhhhcCCCCh-------hHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHH
Confidence 334446665544332 234444455566666754 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q 029051 157 NTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA 197 (200)
Q Consensus 157 ~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa 197 (200)
.|.++|=..|++|..++..||...+....++++..+.++=.
T Consensus 107 ~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le~ 147 (369)
T 3rfy_A 107 EMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEE 147 (369)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999889988888877643
No 5
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=71.15 E-value=25 Score=27.35 Aligned_cols=40 Identities=3% Similarity=0.060 Sum_probs=28.7
Q ss_pred HHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHHhh
Q 029051 160 NDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMF 199 (200)
Q Consensus 160 ~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l 199 (200)
.+|.+--.+|..+++.++...+...+++....++.+...|
T Consensus 91 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L 130 (153)
T 3us6_A 91 QRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKL 130 (153)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778888888888877777777777776665543
No 6
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=63.37 E-value=66 Score=26.96 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=37.8
Q ss_pred hHhhHHHHHHHHHHHHhhHhHHHHhhC----CChHHHHHHHHHHHHHHHHHHHhhC
Q 029051 149 EVRRREYVNTANDLIDNMAEFDYYVRT----PKVYESYLYYEKALKNLDDIVAMFA 200 (200)
Q Consensus 149 kd~Kk~l~~La~kLF~~le~LD~Aar~----Kn~~~a~~~Y~~tv~~LdevLa~l~ 200 (200)
...+-...+++.+|..-+|+|+.|... .+...-..-++-+...|.++|.+.|
T Consensus 102 ~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~k~G 157 (213)
T 4ani_A 102 AAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALKKEG 157 (213)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 334445667889999999999999863 3333444557778888888888765
No 7
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=60.65 E-value=53 Score=30.09 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=61.0
Q ss_pred cccCCCChHHHH---HHHHHHHHHHHHhHHHh-----hhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHH
Q 029051 89 FFEPGLSPEDAV---ARIKQTAEGMHSLREMV-----DRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTAN 160 (200)
Q Consensus 89 f~~~~ls~~eA~---~RIk~~A~~L~~lk~lI-----d~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~ 160 (200)
|-+||-.| ||+ .|+.+.-+.|.++=.-. .-.+|.|+.++|+.=.+. ++.++-.-.|++.+.-++.|-.
T Consensus 333 f~ipppd~-eai~~a~~l~~~~~~~~~lw~~~~~~~~~~~~~~~~~~d~~~i~~w---~~~~~~~~~~~~~~~~~~~l~~ 408 (450)
T 3r6n_A 333 LIIPPPNP-LAVDLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAM---TIAKLKTMRQEDYMKTIADLEL 408 (450)
T ss_dssp EECCSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CHHHHTTSCTTTHHHHHHHHHH
T ss_pred EecCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhcCHHHHHHHHHHHHH
Confidence 45566555 464 45555555554432211 234588888877765544 2334444479999999999887
Q ss_pred HHHHhhHhHHHHh--hCCChHHHHHHHHHHHHHHHHHHH
Q 029051 161 DLIDNMAEFDYYV--RTPKVYESYLYYEKALKNLDDIVA 197 (200)
Q Consensus 161 kLF~~le~LD~Aa--r~Kn~~~a~~~Y~~tv~~LdevLa 197 (200)
.+=+.+.+.+..- ...+--+.+..|..+..-+++++-
T Consensus 409 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (450)
T 3r6n_A 409 HYQEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLVI 447 (450)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccccCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777776665542 112334555666666666666654
No 8
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=47.67 E-value=19 Score=24.68 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=36.8
Q ss_pred HhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhh--HHHHHHHHHHHHhh
Q 029051 116 MVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRR--REYVNTANDLIDNM 166 (200)
Q Consensus 116 lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~K--k~l~~La~kLF~~l 166 (200)
.|+.++..++--.||-....|++|.+.+-.++-++|| +.|..+-.++..++
T Consensus 2 ~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 2 PLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888888889999999999999999999877765 34444445554433
No 9
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.46 E-value=1.1e+02 Score=24.15 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChH------hhHHHHHHHHHHHHhhH
Q 029051 94 LSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEV------RRREYVNTANDLIDNMA 167 (200)
Q Consensus 94 ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd------~Kk~l~~La~kLF~~le 167 (200)
.++++-...|++.|.+|..- -+|+..||++||.. |-+.+.+|-.++=.-=.
T Consensus 50 ~~~~~f~~~~~ela~dli~k-----------------------akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~ 106 (151)
T 1yke_B 50 VPPEEFSNTIDELSTDIILK-----------------------TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVED 106 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888741 24788999999854 34455555555444444
Q ss_pred hHHHHhh
Q 029051 168 EFDYYVR 174 (200)
Q Consensus 168 ~LD~Aar 174 (200)
+|..+++
T Consensus 107 el~~~v~ 113 (151)
T 1yke_B 107 EKIEAIK 113 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 10
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=39.18 E-value=45 Score=23.76 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=39.2
Q ss_pred HHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHH
Q 029051 128 YIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYY 172 (200)
Q Consensus 128 ~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~A 172 (200)
-|..+++.+.-||-.|.--+|-+=. .+-++|.+.|+.+.+||.|
T Consensus 14 KL~~~A~q~kmdLHDLaEdLP~~w~-~i~~vA~~tyda~~~l~~a 57 (71)
T 2js5_A 14 KLNAQATALKMDLHDLAEDLPTGWN-RIMEVAEKTYEAYRQLDEF 57 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTSGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhccchhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999998766 8999999999999999876
No 11
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=38.01 E-value=1.3e+02 Score=22.96 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChH------hhHHHHHHHHHHHHhh
Q 029051 93 GLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEV------RRREYVNTANDLIDNM 166 (200)
Q Consensus 93 ~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd------~Kk~l~~La~kLF~~l 166 (200)
..++++-...|++.|.+|..- -+++..||++||.. |-+.+.+|-.++=.-=
T Consensus 49 ~~~~~~f~~~~~ela~dli~k-----------------------~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~ 105 (132)
T 1ykh_B 49 VVPPEEFSNTIDELSTDIILK-----------------------TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVE 105 (132)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888742 24788999999854 3344555555444433
Q ss_pred HhHHHHh
Q 029051 167 AEFDYYV 173 (200)
Q Consensus 167 e~LD~Aa 173 (200)
.+|..++
T Consensus 106 ~el~~~v 112 (132)
T 1ykh_B 106 DEKIEAI 112 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 12
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=36.92 E-value=1.4e+02 Score=22.67 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=29.0
Q ss_pred HHHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHHhh
Q 029051 159 ANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMF 199 (200)
Q Consensus 159 a~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l 199 (200)
+.+|.+--.+|..+++.++...+...+++....++.+...|
T Consensus 91 a~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L 131 (149)
T 1yvi_A 91 AQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKF 131 (149)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888999988877777666666666665443
No 13
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=35.70 E-value=52 Score=23.99 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=39.1
Q ss_pred HHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHH
Q 029051 128 YIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYY 172 (200)
Q Consensus 128 ~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~A 172 (200)
-|..+++.+.-||--|.--+|-+-. .+-++|.+.|+-+.+||.|
T Consensus 26 KL~~~A~q~kmdLHDLaEdLP~~w~-~i~~vA~~tyda~~~l~~a 69 (81)
T 3csx_A 26 KLNSKAGQMKMDLHDLAEGLPTDYE-NLVETAEKTYEIFRELDQL 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999998766 8999999999999999876
No 14
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=32.74 E-value=77 Score=29.83 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=55.7
Q ss_pred ccchhhhhccccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHH---HHHHHhh-c--CChHhhH
Q 029051 80 GTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQ---DLKTAFS-T--LPEVRRR 153 (200)
Q Consensus 80 ~tr~~lk~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~---DL~tlis-s--kPkd~Kk 153 (200)
-.+.|||..+|.+ .++++.+..+... .+.++++-.|.++..|.+.-..|++. |+-.-|. + +.++.++
T Consensus 423 ~i~~fL~Q~~~~~-~~~~~~~~~l~~~------~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 495 (510)
T 2ck3_A 423 RLTELLKQGQYSP-MAIEEQVAVIYAG------VRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDA 495 (510)
T ss_dssp HHHHTTCCCSSCC-CCHHHHHHHHHHH------HTTSSTTSCGGGHHHHHHHHHHHHHHHCHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHhcCCCCCC-CCHHHHHHHHHHH------HhhhhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHH
Confidence 3455888888874 5888888888764 67778888888999888888888873 4433343 3 5677777
Q ss_pred HHHHHHHHHHH
Q 029051 154 EYVNTANDLID 164 (200)
Q Consensus 154 ~l~~La~kLF~ 164 (200)
.+++..+++-.
T Consensus 496 ~l~~~~~~~~~ 506 (510)
T 2ck3_A 496 KLKEIVTNFLA 506 (510)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666644
No 15
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=32.17 E-value=81 Score=22.03 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHhhcCChHhhHHHHHHHHHHHHhhHhHH
Q 029051 140 LKTAFSTLPEVRRREYVNTANDLIDNMAEFD 170 (200)
Q Consensus 140 L~tlisskPkd~Kk~l~~La~kLF~~le~LD 170 (200)
+..+++.+++++.+.+..+-.++.++++++|
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~~~~~l~~~~ 138 (138)
T 3bpv_A 108 EDLLFRDFTEDERKLFRKMCRRLAEEAVRMR 138 (138)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456667899999899999999998888764
No 16
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=31.29 E-value=1.2e+02 Score=22.15 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=16.4
Q ss_pred hHHHHHHHhhc-----CChHhhHHHHHHHHH
Q 029051 136 LSQDLKTAFST-----LPEVRRREYVNTAND 161 (200)
Q Consensus 136 Lr~DL~tliss-----kPkd~Kk~l~~La~k 161 (200)
+.|.|-..|+. +|.++|++|++.++.
T Consensus 54 ~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3mab_A 54 ELYALEGAVQGIRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHHHHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHCCHHHHHHHHHHHHH
Confidence 34555555544 789999888654443
No 17
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=30.86 E-value=1.7e+02 Score=23.90 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHHhhhhhhhHHHHHHHhhcC----ChHhhHHHHHHHHHHHHhhHhHHHHhhCCC-----hHHHHHHHHHHHHHHHHHHH
Q 029051 127 FYIRLKQAYLSQDLKTAFSTL----PEVRRREYVNTANDLIDNMAEFDYYVRTPK-----VYESYLYYEKALKNLDDIVA 197 (200)
Q Consensus 127 ~~LRlka~~Lr~DL~tlissk----Pkd~Kk~l~~La~kLF~~le~LD~Aar~Kn-----~~~a~~~Y~~tv~~LdevLa 197 (200)
.|||+.+ |+.++-... -...+-....++.+|..-+|+|+.|....+ ......-++-|.+.|.++|.
T Consensus 61 ~~lR~~A-----e~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~l~~Gv~~~~~~l~~~L~ 135 (197)
T 1dkg_A 61 GILRVKA-----EMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDIELTLKSMLDVVR 135 (197)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5777766 444443332 222233445788999999999999986532 12223456667777888887
Q ss_pred hhC
Q 029051 198 MFA 200 (200)
Q Consensus 198 ~l~ 200 (200)
+.|
T Consensus 136 ~~G 138 (197)
T 1dkg_A 136 KFG 138 (197)
T ss_dssp TTT
T ss_pred HCC
Confidence 654
No 18
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=30.72 E-value=39 Score=22.31 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHHHHHHHHHh
Q 029051 38 NPIPSRRNFVTTLISTSLALV 58 (200)
Q Consensus 38 ~~~~~RR~~l~~l~at~~a~~ 58 (200)
.+..+||.+|. ++..+++++
T Consensus 6 ~pdm~RRqfln-~l~~G~~a~ 25 (49)
T 1q90_R 6 VPDMNKRNIMN-LILAGGAGL 25 (49)
T ss_dssp CCCHHHHHHHH-HHHHHHHHH
T ss_pred CCChHHHHHHH-HHHHHHHHH
Confidence 44569999999 544444433
No 19
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=30.57 E-value=84 Score=22.92 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhC
Q 029051 122 WRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRT 175 (200)
Q Consensus 122 W~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~ 175 (200)
...|+.+++-....|...+..--.+-.+..++++.+...+|=..+++|+.++..
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665543100111588889999999999999999999654
No 20
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=29.94 E-value=1.6e+02 Score=23.67 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=46.6
Q ss_pred HHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCC--ChHHHHHHHHHHHHHHHHHHHhhC
Q 029051 126 IFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTP--KVYESYLYYEKALKNLDDIVAMFA 200 (200)
Q Consensus 126 r~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~K--n~~~a~~~Y~~tv~~LdevLa~l~ 200 (200)
-.|+|+.+-|=-|- .+...-+-...+-....++.+|..-+|+|+.|.... +......-++-+.+.|.++|.+.|
T Consensus 40 d~~lR~~Ae~eN~r-kR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~l~~Gv~m~~~~l~~~L~k~G 115 (177)
T 3a6m_A 40 DKYLRLLADFDNYR-KRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAIRDGFFRILAGLG 115 (177)
T ss_dssp HHHHTTTTTTTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45788877542111 111111333445567788999999999999997643 333344557777788888887765
No 21
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=28.32 E-value=3.6e+02 Score=24.91 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhh----cCChHhhHHHHHHHHHHHHhhH
Q 029051 92 PGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFS----TLPEVRRREYVNTANDLIDNMA 167 (200)
Q Consensus 92 ~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlis----skPkd~Kk~l~~La~kLF~~le 167 (200)
.++|.+|-...+++..+ +.. ++-..+...+.+|.+ ..+-|++...+. .++.++|+.+.+..+++-+-++
T Consensus 505 ~~ls~~ei~~~~~~~~~-~~~--~d~~~~~~~~~~n~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEA-NAE--ADRKCEELVQTRNQG----DHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALK 577 (605)
T ss_dssp CSCCHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh-hHh--hHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 36787766555555433 221 111112223333333 334444444443 4788999777777776666654
No 22
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.15 E-value=99 Score=22.00 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=28.2
Q ss_pred HhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHHhh
Q 029051 164 DNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMF 199 (200)
Q Consensus 164 ~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l 199 (200)
+++..=-..|..+|...+..||+.++..|+..+..+
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 334444446788999999999999999999888754
No 23
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=27.60 E-value=1e+02 Score=29.03 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=55.0
Q ss_pred cccchhhhhccccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHH---HHHHHhhc---CChHhh
Q 029051 79 WGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQ---DLKTAFST---LPEVRR 152 (200)
Q Consensus 79 ~~tr~~lk~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~---DL~tliss---kPkd~K 152 (200)
.-.+.|||..+|.+ .++++.+..+... .+.++++-.+..+..|.+.=..|++. |+-.-|.. +.++-+
T Consensus 427 ~~i~~fL~Q~~~~~-~~~~e~~~~l~~~------~~g~ld~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 499 (515)
T 2r9v_A 427 QRLMELLKQEQYSP-MPVEEQVVVLFAG------VRGYLDDLPVEEVRRFEKEFLRFMHEKHQDILDDIKTKKELTSETE 499 (515)
T ss_dssp HHHHHHTCCCTTCC-CCHHHHHHHHHHH------HTTTTTTSCGGGHHHHHHHHHHHHHHHCHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHhcCCCCCC-CCHHHHHHHHHHH------HhhhhccccHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHH
Confidence 34555888888875 6888888888774 66777788888888888888888873 43333332 567777
Q ss_pred HHHHHHHHHHHH
Q 029051 153 REYVNTANDLID 164 (200)
Q Consensus 153 k~l~~La~kLF~ 164 (200)
+.+++..+++-.
T Consensus 500 ~~l~~~~~~~~~ 511 (515)
T 2r9v_A 500 EKLKKAIEEFKT 511 (515)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666543
No 24
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=25.41 E-value=3e+02 Score=23.01 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=57.6
Q ss_pred hhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCC------ChHHHHHHHHHHHHHH
Q 029051 119 RMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTP------KVYESYLYYEKALKNL 192 (200)
Q Consensus 119 ~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~K------n~~~a~~~Y~~tv~~L 192 (200)
..+....|..|-..+--|--|.+.|+++--+.|- .|-..+++....+++|=.++|.. +.+++|...=++++++
T Consensus 39 ~~~F~~~qe~Ilk~Ak~Lvedtk~LV~~a~~tQe-~LA~aa~~~v~~i~~La~~vK~gAAsl~s~dp~tQv~LLna~kdV 117 (199)
T 3fyq_A 39 DGSFADHREHILQTAKALVEDTKVLVTGAAGTQD-QLANAAQNAVSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDV 117 (199)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHcccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3567788888888888899999999999655555 78888999999999998887754 6777877766665554
Q ss_pred HH
Q 029051 193 DD 194 (200)
Q Consensus 193 de 194 (200)
-.
T Consensus 118 a~ 119 (199)
T 3fyq_A 118 AS 119 (199)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.07 E-value=1e+02 Score=22.01 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q 029051 154 EYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIV 196 (200)
Q Consensus 154 ~l~~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevL 196 (200)
.+.+-|..|+..=.+.|.+ ++..+|..+|.+++..|-.++
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~---g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAE---SRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655666765 899999999999998887765
No 26
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=24.52 E-value=1.3e+02 Score=24.87 Aligned_cols=31 Identities=6% Similarity=-0.080 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHHhhhhcHHHHHHHHhhh
Q 029051 102 RIKQTAEGMHSLREMVDRMAWRYVIFYIRLK 132 (200)
Q Consensus 102 RIk~~A~~L~~lk~lId~~sW~yvr~~LRlk 132 (200)
-|++..++|..+++.|+.+.|..+..++..-
T Consensus 240 ~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~a 270 (298)
T 2pv7_A 240 VIETLKQTYDEALTFFENNDRQGFIDAFHKV 270 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777788888889999988888888777543
No 27
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=24.09 E-value=1.5e+02 Score=27.88 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=56.6
Q ss_pred cccchhhhhccccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHH---HHHHHhhc---CChHhh
Q 029051 79 WGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQ---DLKTAFST---LPEVRR 152 (200)
Q Consensus 79 ~~tr~~lk~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~---DL~tliss---kPkd~K 152 (200)
.-.+.|||..+|.+ .+++|.+..+... .+.++++-.+..+..|.+.=..|++. |+-.-|.. +.++-+
T Consensus 415 ~~i~~fL~Q~~~~~-~~~~e~~~~l~~~------~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 487 (507)
T 1fx0_A 415 QRLRELLKQPQSAP-LTVEEQVMTIYTG------TNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAE 487 (507)
T ss_dssp HHHHHHHCCCTTCC-CCHHHHHHHHHHH------HTTSSSSSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHCCCCCCC-CCHHHHHHHHHHH------hhchhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHH
Confidence 33455888888864 5888888777663 67777888888888888888888873 44343433 567777
Q ss_pred HHHHHHHHHHHHhh
Q 029051 153 REYVNTANDLIDNM 166 (200)
Q Consensus 153 k~l~~La~kLF~~l 166 (200)
+.+++..+++...+
T Consensus 488 ~~l~~~~~~~~~~~ 501 (507)
T 1fx0_A 488 ALLKEAIQEQMERF 501 (507)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777765543
No 28
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=23.66 E-value=44 Score=22.18 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=17.9
Q ss_pred HhhcCChHhhHHHHHHHHHHHH
Q 029051 143 AFSTLPEVRRREYVNTANDLID 164 (200)
Q Consensus 143 lisskPkd~Kk~l~~La~kLF~ 164 (200)
-|+++|.++|..+..|-..|-.
T Consensus 23 QI~~LPp~qR~qI~~LR~q~~~ 44 (49)
T 2j8p_A 23 QIAMLPPEQRQSILILKEQIQK 44 (49)
T ss_dssp HHHTSCHHHHTHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHHHh
Confidence 4788999999999888776643
No 29
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=23.48 E-value=1.5e+02 Score=21.88 Aligned_cols=41 Identities=7% Similarity=-0.010 Sum_probs=34.7
Q ss_pred HhhHHHHHHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHH
Q 029051 150 VRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALK 190 (200)
Q Consensus 150 d~Kk~l~~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~ 190 (200)
+++..++.++.+|-...+.|-.|+.++|.......|..+..
T Consensus 77 ~~~~~F~~~~~~~~~aa~~L~~aA~~~D~~~~~~a~~~v~~ 117 (129)
T 2j8w_A 77 SDAAGFKAAADKFAAAVDKLDAAGKTGDFAQIKAAVGETGG 117 (129)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999998887777766544
No 30
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=23.04 E-value=59 Score=24.39 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=23.9
Q ss_pred HHHHHHhHHHhhhhcHHHHHHHHhhhhhhh
Q 029051 107 AEGMHSLREMVDRMAWRYVIFYIRLKQAYL 136 (200)
Q Consensus 107 A~~L~~lk~lId~~sW~yvr~~LRlka~~L 136 (200)
-++|.+|++-+++..|..+|..|---+.|-
T Consensus 66 feemdelreavekedwenlrdelldvanfc 95 (114)
T 2p06_A 66 FEEMDELREAVEKEDWENLRDELLDVANFC 95 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999988775555443
No 31
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=23.04 E-value=1.5e+02 Score=21.52 Aligned_cols=68 Identities=18% Similarity=0.102 Sum_probs=34.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhHHHhhh---hcHHHHHHHHhhhhh-hhHHHHHHHhhc-----CChHhhHHHHHHHHH
Q 029051 91 EPGLSPEDAVARIKQTAEGMHSLREMVDR---MAWRYVIFYIRLKQA-YLSQDLKTAFST-----LPEVRRREYVNTAND 161 (200)
Q Consensus 91 ~~~ls~~eA~~RIk~~A~~L~~lk~lId~---~sW~yvr~~LRlka~-~Lr~DL~tliss-----kPkd~Kk~l~~La~k 161 (200)
+|+++|.=+..=. .-+|..+++|.+. ..|.-++.. +.... .+.+-|-..|+. +|.++|++|..-.+.
T Consensus 9 LPNiG~~~e~~L~---~vGI~s~e~L~~~Ga~~ay~rL~~~-~~~~c~~~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3bqs_A 9 LPNIGKVLEQDLI---KAGIKTPVELKDVGSKEAFLRIWEN-DSSVCMSELYALEGAVQGIRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp STTCCHHHHHHHH---HTTCCSHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH---HcCCCCHHHHHhCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHcCCCHHHCCHHHHHHHHHHHHH
Confidence 5666665442221 2244455555533 334444432 22222 344555555654 688899888765444
Q ss_pred H
Q 029051 162 L 162 (200)
Q Consensus 162 L 162 (200)
|
T Consensus 85 ~ 85 (93)
T 3bqs_A 85 L 85 (93)
T ss_dssp H
T ss_pred h
Confidence 3
No 32
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=22.93 E-value=57 Score=23.23 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=24.9
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHhHH
Q 029051 88 RFFEPGLSPEDAVARIKQTAEGMHSLRE 115 (200)
Q Consensus 88 rf~~~~ls~~eA~~RIk~~A~~L~~lk~ 115 (200)
|++.++-+.++..+||++.+.+++.+..
T Consensus 26 Glvtea~Tleel~~~i~~~i~~lLe~n~ 53 (73)
T 1wv8_A 26 GLATEAATLEELLAKLAVMVPELLEENG 53 (73)
T ss_dssp TCCCEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred ceeeecCCHHHHHHHHHHHHHHHHHhcC
Confidence 5788889999999999999999998753
No 33
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=22.33 E-value=2.1e+02 Score=20.62 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=23.7
Q ss_pred HHHHhhcCChHhhHHHHHHHHHHHHhhHhH
Q 029051 140 LKTAFSTLPEVRRREYVNTANDLIDNMAEF 169 (200)
Q Consensus 140 L~tlisskPkd~Kk~l~~La~kLF~~le~L 169 (200)
...+...+++++...+..+-.++.++++++
T Consensus 129 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~ 158 (159)
T 3s2w_A 129 GEILFSSFDDRQRREITNSLEIMFENGLKI 158 (159)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 344566688888889999999998888764
No 34
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=21.78 E-value=1.6e+02 Score=21.66 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=36.4
Q ss_pred cCCh--HhhHHHHHHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHH
Q 029051 146 TLPE--VRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALK 190 (200)
Q Consensus 146 skPk--d~Kk~l~~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~ 190 (200)
++|+ +++..++.++.+|-...+.|-.|+.++|.......+..+..
T Consensus 68 A~p~IW~~~~~F~~~~~~~~~aa~~l~~aA~~gD~~~~~~a~~~v~~ 114 (127)
T 2ykz_A 68 ARPEIWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGA 114 (127)
T ss_dssp BCTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4453 46678999999999999999999999998887777766544
No 35
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=21.43 E-value=3.8e+02 Score=25.81 Aligned_cols=80 Identities=5% Similarity=0.151 Sum_probs=40.3
Q ss_pred hhhccccCC-CChHHHHHHHHHHHHHHHHhHH-------Hhh-hhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHH
Q 029051 85 LKERFFEPG-LSPEDAVARIKQTAEGMHSLRE-------MVD-RMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREY 155 (200)
Q Consensus 85 lk~rf~~~~-ls~~eA~~RIk~~A~~L~~lk~-------lId-~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l 155 (200)
++++|..|+ -++.++-|...+...-|..+-. +|+ .-.|..++++.- -+++++.+. ...|.++...+
T Consensus 503 i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~-k~~~~~~~~~~ 577 (600)
T 3vr4_A 503 IREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEIMEGTV----AVRERISRS-KYIPEEELAKI 577 (600)
T ss_dssp HHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHCH----HHHHHHHTG-GGSCGGGTHHH
T ss_pred HHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhH----HHHHHHHHh-cCCCcchHHHH
Confidence 556788777 3443443444333333333333 333 345988887421 133333333 12444455567
Q ss_pred HHHHHHHHHhhHhH
Q 029051 156 VNTANDLIDNMAEF 169 (200)
Q Consensus 156 ~~La~kLF~~le~L 169 (200)
.++.+++-..|++|
T Consensus 578 ~~~~~~~~~~~~~~ 591 (600)
T 3vr4_A 578 SSINEEIKETIQLI 591 (600)
T ss_dssp HTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77766666655555
No 36
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=20.78 E-value=2.1e+02 Score=20.11 Aligned_cols=30 Identities=10% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHhhcCChHhhHHHHHHHHHHHHhhHhH
Q 029051 140 LKTAFSTLPEVRRREYVNTANDLIDNMAEF 169 (200)
Q Consensus 140 L~tlisskPkd~Kk~l~~La~kLF~~le~L 169 (200)
...+.+.+++++.+.+..+-.++.++++++
T Consensus 119 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~l 148 (148)
T 3nrv_A 119 EKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 345556688888888888888888887754
No 37
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=20.70 E-value=68 Score=19.57 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=9.5
Q ss_pred chhHHHHHHHHHHH
Q 029051 41 PSRRNFVTTLISTS 54 (200)
Q Consensus 41 ~~RR~~l~~l~at~ 54 (200)
.|||.||-+-.+++
T Consensus 3 lsRR~FLK~~aaa~ 16 (35)
T 2pq4_B 3 LSRRSFMKANAVAA 16 (35)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 47999998444443
No 38
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=20.04 E-value=3.9e+02 Score=22.41 Aligned_cols=73 Identities=12% Similarity=0.018 Sum_probs=51.3
Q ss_pred cHHHHHHHHhhhhhhhHHHHHH----HhhcCChHhhHHHHHHHH---HHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHH
Q 029051 121 AWRYVIFYIRLKQAYLSQDLKT----AFSTLPEVRRREYVNTAN---DLIDNMAEFDYYVRTPKVYESYLYYEKALKNLD 193 (200)
Q Consensus 121 sW~yvr~~LRlka~~Lr~DL~t----lisskPkd~Kk~l~~La~---kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~Ld 193 (200)
++.+...-++.|.+.| +-+.- +++..+.++.+.+.+... -.|+-+|+... -+++....++++|+++++.|+
T Consensus 167 t~~~y~~~i~~KTa~L-~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~~~-~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 167 SLDFIEYVCKKKYGEM-HACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNS-HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp CHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHHH
Confidence 4566666778999888 43433 334456666667777654 45777777755 456678899999999999987
Q ss_pred HH
Q 029051 194 DI 195 (200)
Q Consensus 194 ev 195 (200)
.+
T Consensus 245 ~~ 246 (274)
T 3kra_B 245 GF 246 (274)
T ss_dssp TS
T ss_pred cC
Confidence 64
Done!