BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029052
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
Length = 193
Score = 293 bits (749), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 144/166 (86%), Positives = 156/166 (93%), Gaps = 1/166 (0%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETM+IPDGV IK+NAK+IEVEGPRGKL RDFKHLNLDF L+TDE GK+KLKI
Sbjct: 1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 59
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
DAWFGSRKTSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N NKSIEIRNF
Sbjct: 60 DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 119
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEKKVRKVD+LDGV+++RSEKVKDE++LDGNDIELVSRS ALINQ
Sbjct: 120 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQ 165
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2
SV=3
Length = 194
Score = 291 bits (746), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/166 (84%), Positives = 155/166 (93%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETMDIPD V IK++AK+IEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKI
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG KSIEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEKKVRKV+MLDGVT+VRSEKVKDE++LDGNDIELVSRS ALINQ
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQ 166
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2
SV=1
Length = 194
Score = 289 bits (739), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 139/166 (83%), Positives = 154/166 (92%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETMDIPDGV IK+NAK+IEVEGPRGKL+RDFKHLNLDF L+ D+ TGKR+LKI
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI NKSIEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEKKVRKV+MLDGV +VRSEKVKDE+IL+GNDIELVSRS ALINQ
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQ 166
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9
PE=2 SV=3
Length = 190
Score = 276 bits (705), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 130/166 (78%), Positives = 152/166 (91%), Gaps = 4/166 (2%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTIL+SETM+IP+GV +++ AK++ VEGPRGKL+R+FKHLNLDF L+ G RKL++
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQV 56
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N +IEIRNF
Sbjct: 57 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEKKVRKVDML+GVT++RSEKVKDEL+LDGNDIELVSRSAALINQ
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 162
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1
Length = 192
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 118/166 (71%), Gaps = 3/166 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIPD V + + + + V+GPRG L R+F H+NL+ L+ ++ +KL++
Sbjct: 1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GV S KDEL+L+GNDIELVS SAALI Q
Sbjct: 118 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQ 163
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2
Length = 192
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/166 (55%), Positives = 120/166 (72%), Gaps = 3/166 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V+I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q
Sbjct: 118 LGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1
Length = 192
Score = 187 bits (474), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 119/166 (71%), Gaps = 3/166 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A IRT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1
Length = 192
Score = 186 bits (473), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/166 (55%), Positives = 119/166 (71%), Gaps = 3/166 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q
Sbjct: 118 LGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1
Length = 192
Score = 186 bits (473), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/166 (55%), Positives = 119/166 (71%), Gaps = 3/166 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1
Length = 192
Score = 186 bits (473), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/166 (55%), Positives = 119/166 (71%), Gaps = 3/166 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1
Length = 192
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/166 (55%), Positives = 118/166 (71%), Gaps = 3/166 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GV S+ KDELIL GNDIELVS SAALI Q
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQ 163
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1
Length = 190
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 119/166 (71%), Gaps = 5/166 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I++++ + IP+G+ + + ++++ V+GPRG L R+FKHL +D ++ R LK+
Sbjct: 1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+ WFGS+K AA+RT SHV N+I GVTKG++YKMR VYAHFPIN N IEIRNF
Sbjct: 56 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GVTVV S K KDELI++GN +E VS SAALI Q
Sbjct: 116 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 161
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1
SV=2
Length = 190
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 116/166 (69%), Gaps = 5/166 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+TI S++ + IP +K + A+++ + G RG L R FKHL LD + M D KR LK+
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMY-MPD----KRTLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+ WFG++K AA+RT SH+ N+I GVT G++YKMR VYAHFPIN N IEIRNF
Sbjct: 56 EKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V+M GVTVV S KDELI++GNDIE VS SAALI Q
Sbjct: 116 LGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQ 161
>sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1
SV=2
Length = 188
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 118/165 (71%), Gaps = 5/165 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I SS + IP+ V + + + ++V GPRG LS+ F H ++D +L+ GK++L +
Sbjct: 1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D WFG+RK A I+T S + N+ITGVTKGY YKMRFVYAHFPIN ++ + + +EIRNF
Sbjct: 56 DLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALIN 165
GEK VR++++LDG+T R+EK KDE++L GN +EL+S+S A I
Sbjct: 116 FGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQ 160
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1
SV=1
Length = 189
Score = 173 bits (439), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 116/166 (69%), Gaps = 5/166 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I S++T+ P+GV + +I+ V GPRG + +DF+HL+++ E GK L++
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEM-----ERIGKSTLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
WFG RK AAIRT SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+++EIRNF
Sbjct: 56 RKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK VR+V + +GV S KDE++++GND++ VS++AA I Q
Sbjct: 116 LGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQ 161
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9B PE=1 SV=1
Length = 191
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 118/169 (69%), Gaps = 7/169 (4%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + ++IP+GV + I ++I++V GPRG L+++ KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI--GNANKSIEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + K IE+R
Sbjct: 56 AVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
NFLG+KK+R V + DGVT+ S VKDE++L GN +E VS++AA + Q+
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQI 164
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9A PE=1 SV=2
Length = 191
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 119/169 (70%), Gaps = 7/169 (4%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + +++P+GV + I ++I++V GPRG L+++ KH+++ F + ++ +K+
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQL-----IKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI--GNANKSIEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + K IE+R
Sbjct: 56 AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
NFLG+KK+R V + DGVT+ S VKDE++L GN +E VS++AA + Q+
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQI 164
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9b PE=3 SV=1
Length = 189
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 6/166 (3%)
Query: 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
+ I ET+ IP+GV + I A+++ V+GPRG L ++ + ++++ + +K
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGN------TIKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFL 121
W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++ +EIRNFL
Sbjct: 57 VWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
GE+ R + L GVTV S VKDE+I++GN +E VS+SAA I Q+
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQI 162
>sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2
SV=1
Length = 141
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 93/131 (70%), Gaps = 5/131 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK + S++T+D PDGV + +++ V GPRG L RDF+HL+++ E GK +L++
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
WFG RK AAIRT SH+ N+I GVTKG+RYKMR VYAHFPIN ++ + +++EIRNF
Sbjct: 56 RKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNF 115
Query: 121 LGEKKVRKVDM 131
LGEK VR V +
Sbjct: 116 LGEKIVRPVPL 126
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9a PE=3 SV=1
Length = 190
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 106/166 (63%), Gaps = 6/166 (3%)
Query: 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
+ I ET+ IP GV + I A+ + V GPRG L ++ +H++++ + +K
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGN------TIKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFL 121
W GSRK +A IR+ S + N+I GVT+G+RYKMR VYAHFPIN ++ +EIRNFL
Sbjct: 57 VWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
GE+ R + L GVTV S VKDE+IL+GN +E VS+SAA I Q+
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQI 162
>sp|Q22AX5|RL9_TETTS 60S ribosomal protein L9 OS=Tetrahymena thermophila (strain SB210)
GN=RPL9 PE=1 SV=1
Length = 188
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+ +L+ + IPD V I +++EV+GP G + R F++ ++D T + +K+
Sbjct: 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADN-----VKL 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
W SRK A +++ S + N+I GVT+GY++KM+ +AHFPI ++ SIEI++F
Sbjct: 56 QIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK++R++ L GV + R ++ K+ L L G D+ VS++ ALI+Q
Sbjct: 116 LGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQ 161
>sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl6p PE=3 SV=1
Length = 186
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 109/167 (65%), Gaps = 10/167 (5%)
Query: 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHL-NLDFHLMTDEETGKRKLKI 60
K + +E + +P+GV++ I+ + V+GP+G+L+RDF H N+ L DEE +K+ +
Sbjct: 3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEG--KKVVV 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+A+F +R+ A + T +H+ N+ITGVTKG+RYK++ VY+HFP+ + + I NF
Sbjct: 61 EAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKV--QGDKVVIENF 118
Query: 121 LGEKKVRKVDMLDGVTVVRSEKV-KDELILDGNDIELVSRSAALINQ 166
LGEK R ++ GVTV KV KD++I++G DIE V ++AA I Q
Sbjct: 119 LGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQ 161
>sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1
Length = 186
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 94/143 (65%), Gaps = 8/143 (5%)
Query: 25 IEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLI 84
++V GP+G+L RDF H + EE GK+++ ++ +F +RK A + T +H+ N+I
Sbjct: 26 VKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMI 84
Query: 85 TGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVK 144
TGVTKG+RYKM+ V++HFPI+ + +EI NF+GEK R +L GVTV KV+
Sbjct: 85 TGVTKGWRYKMKIVFSHFPISVKV--VGDRVEIHNFIGEKAPRVAKVLPGVTV----KVQ 138
Query: 145 D-ELILDGNDIELVSRSAALINQ 166
++I++G DIE V+++AA I Q
Sbjct: 139 GRDVIIEGTDIEKVAQTAANIEQ 161
>sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1
Length = 185
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 99/159 (62%), Gaps = 11/159 (6%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E +DIP+ V ++IN ++V GP+G + RDF H+ +++ +E K + ++ +F R
Sbjct: 9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADR 63
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEK--K 125
+ A + T SH+ N+I GV KGYRYK++ +Y+HFPI + + N+ + I+NFLGEK +
Sbjct: 64 RKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKSDR 123
Query: 126 VRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALI 164
+ K+ D V+ E ++I++G DIE V ++AA I
Sbjct: 124 IAKIIGEDVKVTVKGE----DIIVEGIDIEHVGQTAANI 158
>sp|B8D5V4|RL6_DESK1 50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl6p PE=3 SV=1
Length = 184
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 96/160 (60%), Gaps = 8/160 (5%)
Query: 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+E ++IP+ V ++++ + V+GP+G ++RDF H F + D R + ++ +
Sbjct: 8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVAD 62
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKV 126
RK A + T +H+ N+ITGV +GYRYK++ +++HFPI S+ NK + IRNF+GEK
Sbjct: 63 RKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSD 122
Query: 127 RKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
R + V V S +++I++G DIE V +AA I +
Sbjct: 123 RIAKIYGNVKVKVS---GEDIIIEGVDIEEVGLTAASIER 159
>sp|Q975J6|RL6_SULTO 50S ribosomal protein L6P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl6p PE=3 SV=1
Length = 186
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 100/165 (60%), Gaps = 12/165 (7%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK + E ++IP G+ + I I+V+GP+G++ +DF H++ + ++ K+ +
Sbjct: 1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKED----NKIVV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+ F R+ A + ++H+ N+ TGVTKGYRY ++ +Y HFP+ + + ++I+N
Sbjct: 56 ETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKV--SGNEVQIQNL 113
Query: 121 LGEKKVRKVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALI 164
+GEK +R+ ++ GV V V+ E ++I++G DIE V ++AA I
Sbjct: 114 IGEKNIRRAKIMTGVKVNVKGE----DIIVEGQDIEKVGQTAANI 154
>sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 13/160 (8%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + ++V+GP+G++ R+ + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + I NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEKAPR 120
Query: 128 KVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQ 166
+ +L GVTV KVK E+I++G D E V ++AA I Q
Sbjct: 121 RAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQ 156
>sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl6p PE=3 SV=1
Length = 184
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 13/160 (8%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + ++V+GP+G+L R+ K+ + + T++ K+ I F +
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGV--QIFTED----GKVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + I NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKV--QGDEVVIENFLGEKNPR 120
Query: 128 KVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQ 166
+ +L GVTV KVK E+ ++G D E V ++AA I Q
Sbjct: 121 RAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQ 156
>sp|B6YSN0|RL6_THEON 50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 96/159 (60%), Gaps = 11/159 (6%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ I +++V GP+G+L R+ K+ + + T++ K+ I F +
Sbjct: 9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGV--QIFTED----GKVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + I NFLGEK R
Sbjct: 63 KDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKV--QGDEVVIENFLGEKNPR 120
Query: 128 KVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
+ +L GVTV + + E+I++G D E V ++AA I Q
Sbjct: 121 RAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQ 156
>sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl6p PE=1 SV=1
Length = 184
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 96/160 (60%), Gaps = 13/160 (8%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + ++V+GP+G+L R+F + + T E G + D F R
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGI--QIFT--EDGNVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFPI+ + + I NFLGEK R
Sbjct: 63 KDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKV--QGDEVIIENFLGEKAPR 120
Query: 128 KVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALINQ 166
K +L GVTV VR + E+I++G D E V ++AA I Q
Sbjct: 121 KAKILPGVTVKVRGQ----EIIVEGIDKEAVGQTAANIEQ 156
>sp|Q9UX91|RL6_SULSO 50S ribosomal protein L6P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl6p PE=3 SV=1
Length = 181
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 103/171 (60%), Gaps = 24/171 (14%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFK-----HLNLDFHLMTDEETGK 55
M+ ++ E ++IP V + + II+++GP+G++ +DF ++LD +
Sbjct: 1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGN--------- 51
Query: 56 RKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINAS-IGNANKS 114
K+ ++ F +R+ A + +SH+ N+ITGVTKGYRY ++ +Y HFP + +GN
Sbjct: 52 -KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGN---E 107
Query: 115 IEIRNFLGEKKVRKVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALI 164
++I N +GEK R+ +L+GV V V+ E +++++G ++E V+++AA I
Sbjct: 108 VQITNLIGEKNTRRAQILEGVKVTVKGE----DIVVEGPNLEAVAQTAANI 154
>sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl6p PE=3 SV=1
Length = 176
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 96/157 (61%), Gaps = 11/157 (7%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+DIPDGV ++I+ + + V+GP+G+LSR+ + +++ + E++ K+ I + ++
Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIE---IKREDS---KILIRSVARKKQH 62
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
A + T +H+ N+I GVT G+ Y+MR VY+HFPI + A+ + I NFLGE+K R
Sbjct: 63 LAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFA 120
Query: 130 DMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
++ V V E KDE+++ G D E V ++ A I Q
Sbjct: 121 TIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQ 154
>sp|Q2FSG5|RL6_METHJ 50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rpl6p PE=3 SV=1
Length = 176
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+ IP GV + ++ ++ V+GP+G L RD + ++ + G ++ +
Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAV 60
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
++ + T SH N+ TGVTKGY Y M+ VY+HFPI + +++EI NFLGEK R
Sbjct: 61 TSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSA 118
Query: 130 DMLDGVTVVRSEKV-KDELILDGNDIELVSRSAALINQ 166
+L G TV KV DE+ + G D E+V +AA I +
Sbjct: 119 RILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIER 152
>sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl6p PE=3 SV=2
Length = 184
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 13/160 (8%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + ++V+GP+G++ + + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + I NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEKAPR 120
Query: 128 KVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQ 166
+ +L GVTV KVK E+I++G D E ++AA I Q
Sbjct: 121 RAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQ 156
>sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl6p PE=3
SV=1
Length = 182
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 94/159 (59%), Gaps = 12/159 (7%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E +++P+GV + I+ ++V GP+G++ RDF H + D + ++++F
Sbjct: 9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKA 63
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
+ A + H+ N+I GV G+RYK++ +Y+HFPIN + +K I I NFLGEK +R
Sbjct: 64 RQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLR 121
Query: 128 KVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALIN 165
++ GV V +VK ++I++G D+E V+++AA I
Sbjct: 122 IARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIE 156
>sp|O26127|RL6_METTH 50S ribosomal protein L6P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl6p PE=3 SV=1
Length = 177
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 14/163 (8%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E + IPDGV + I+ + V+GP+ +LSR F H + + D K+ ++ F
Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKF 58
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEK 124
+K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + A + I NFLGE+
Sbjct: 59 PKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKV--AGDKVVIENFLGER 116
Query: 125 KVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQ 166
R + V +VK DE+ + G + E V ++ A I Q
Sbjct: 117 HPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQ 155
>sp|A4FWA5|RL6_METM5 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl6p PE=3 SV=1
Length = 182
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 13/163 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V ++IN + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S GN ++ I NFLGE
Sbjct: 60 PRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN---TVTIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
K R ++DGVTV S +E+I+ G + E V ++AA I Q
Sbjct: 117 KYTRTAKIMDGVTVKVS---GEEVIVSGANKEFVGQTAANIEQ 156
>sp|A6VH01|RL6_METM7 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl6p PE=3 SV=1
Length = 182
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 90/163 (55%), Gaps = 13/163 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V +++N + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S GN ++ I NFLGE
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN---TVTIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
K R ++DGVTV S +E+I+ G + E V ++AA I Q
Sbjct: 117 KYTRTAKIMDGVTVKVS---GEEVIVSGANKEFVGQTAANIEQ 156
>sp|O05637|RL6_SULAC 50S ribosomal protein L6P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl6p PE=3 SV=1
Length = 189
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 97/165 (58%), Gaps = 12/165 (7%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
+K E + IPD VK+ + +++V+GP+G++ +DF + + +E K+ +
Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAK-GIRIQLNEG----KIIL 58
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
+ F R+ A + + ++H+ N+ITG GYRY ++ + HFPI+ + + +++ N
Sbjct: 59 ETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKV--SGDEVQVSNL 116
Query: 121 LGEKKVRKVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALI 164
+GEK +R+ +L GV V V+ E +++++G+DI V+++AA I
Sbjct: 117 IGEKNIRRAKILPGVKVTVKGE----DIVVEGSDIYNVAQTAANI 157
>sp|C5A269|RL6_THEGJ 50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1
Length = 184
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 97/160 (60%), Gaps = 13/160 (8%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ + +++V+GP+G+L R+ K+ + + T++ K+ + F +
Sbjct: 9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGV--KIFTED----GKVVVYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + I NFLGEK R
Sbjct: 63 KDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKV--QGDEVIIENFLGEKNPR 120
Query: 128 KVDMLDGVTV-VRSEKVKDELILDGNDIELVSRSAALINQ 166
+ +L GVTV VR + E+ ++G D E V ++AA I Q
Sbjct: 121 RAKILPGVTVKVRGQ----EITVEGIDKEKVGQTAANIEQ 156
>sp|Q0W1X2|RL6_UNCMA 50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I
GN=rpl6p PE=3 SV=1
Length = 177
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 91/157 (57%), Gaps = 10/157 (6%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+++P GV + ++ + +G +G++SR+F+ + T K+ ++ ++T
Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGISVR------TDGGKVIVETGKDDKQT 62
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NFLGE+K R
Sbjct: 63 KATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTA 121
Query: 130 DMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
+++ G T V + D+++L G + E + ++AA I Q
Sbjct: 122 NIV-GETKVTVQ--GDKVVLTGINKEDLGQTAANIEQ 155
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 13/163 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V ++IN + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+I GVT G+ YK+ YAHFP+ S GN ++ I NFLGE
Sbjct: 60 PRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN---TVMIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
K R ++DGVTV S +E+I+ G + E V ++AA I Q
Sbjct: 117 KYTRTAKIMDGVTVKVS---GEEVIVSGANKEFVGQTAANIEQ 156
>sp|Q6LXD7|RL6_METMP 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl6p PE=3 SV=1
Length = 182
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 13/163 (7%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V ++IN + V+ +L R+ + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIS------TEDGKVVIECAF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S GN ++ I NFLGE
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN---TVMIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
K R ++DGVTV S +++++ G + E V ++AA I Q
Sbjct: 117 KYTRTAKIMDGVTVKVS---GEDVVVSGANKEFVGQTAANIEQ 156
>sp|A5UL72|RL6_METS3 50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1
Length = 178
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 15/161 (9%)
Query: 8 ETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV++ IN + V+GP G+ SR F + N+D +T+ E + ++ F +
Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVE---NNVVLETSFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKS-IEIRNFLGEKKV 126
K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + NK + I NFLGE+
Sbjct: 63 KDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV---NKDVVVIDNFLGERHP 119
Query: 127 RKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQ 166
R ++ VV VK DE+ + G + E V ++ A + Q
Sbjct: 120 RTAKVVGSAKVV----VKGDEVTITGINKEHVGQTMANLEQ 156
>sp|P54042|RL6_METJA 50S ribosomal protein L6P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl6p PE=3 SV=1
Length = 182
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 11/160 (6%)
Query: 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
E + IP+ V+++IN + V+ +L R F+H + DE + I +
Sbjct: 8 EERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGDE------IVIFCEYPR 61
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKV 126
RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ N+ I I NFLGEK
Sbjct: 62 RKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSV-KGNEVI-IENFLGEKHP 119
Query: 127 RKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
R+ +++GVTV S +++I+ G D E V ++AA I Q
Sbjct: 120 RRARIMEGVTVKIS---GEDVIVTGIDKEKVGQTAANIEQ 156
>sp|Q8PV34|RL6_METMA 50S ribosomal protein L6P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl6p PE=3 SV=1
Length = 176
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 11/160 (6%)
Query: 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+ T++IP+GV + ++ + +GP+G + R F + + + E + +DA
Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSR 59
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKV 126
++ A + T SH+ NLI GV++G+ KM VYAHFP+ + K++ I NFLGEKK
Sbjct: 60 KEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKP 117
Query: 127 RKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
R +L V S +E+++ G + E V ++AA I Q
Sbjct: 118 RIAKILGETKVKVS---GNEIVVSGINKEDVGQTAANIEQ 154
>sp|Q2NFX3|RL6_METST 50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl6p PE=3 SV=1
Length = 184
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 14/162 (8%)
Query: 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+E + IP+ V + IN + V+G G++ R+F H + + DEE + + F +
Sbjct: 8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKIT--ISNDEEN----VTVKVAFPN 61
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKV 126
+K A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NFLGE+
Sbjct: 62 KKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSP 119
Query: 127 RKVDML-DGVTV-VRSEKVKDELILDGNDIELVSRSAALINQ 166
RK ++ D V V V+ E ++ + G + E V ++ A I Q
Sbjct: 120 RKAKIIGDDVKVSVKGE----DVTITGINKEHVGQTMANIEQ 157
>sp|Q9HPB8|RL6_HALSA 50S ribosomal protein L6P OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl6p PE=1 SV=3
Length = 178
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
++IPD V +++ + VEGP G ++R + ++D + D + + + KT
Sbjct: 6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDD------AVVVASEVDDAKT 59
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
+ + T SHV N+ GV++G+ YK+ Y+HFP+ + + + I+NFLGEK R+
Sbjct: 60 DSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRT 117
Query: 130 DMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
+ VV ++ E+ L G IE V ++AA I Q+
Sbjct: 118 QIRGDTDVVVDDE---EVTLSGPSIEDVGQTAADIEQL 152
>sp|Q18GG5|RL6_HALWD 50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl6p PE=3 SV=1
Length = 182
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 11/157 (7%)
Query: 10 MDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
++IP+ V +++ + VEGP G ++R + ++ + DE+ + I+ KT
Sbjct: 6 IEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSV--DEDADADAVVIETDETDAKT 63
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKV 129
SA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + I NFLGEK R+
Sbjct: 64 SATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSV--EGDEVIIENFLGEKASRRT 121
Query: 130 DM-------LDGVTVVRSEKVKDELILDGNDIELVSR 159
+ +DG V + K+++ DIE ++R
Sbjct: 122 PIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTR 158
>sp|A6UQ60|RL6_METVS 50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1
Length = 182
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 15/164 (9%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V +++N + V+ L R+ ++ + + K+ +++ F
Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI-GNANKSIEIRNFLGE 123
+ +A + T SH+ N+I GV++G+ YK+ YAHFP+ + GN ++ I NFLGE
Sbjct: 60 PKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGN---TVIIDNFLGE 116
Query: 124 KKVRKVDMLDGVTVVRSEKVK-DELILDGNDIELVSRSAALINQ 166
K R +++GVTV KV +E+I+ G + E V ++AA I Q
Sbjct: 117 KYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQ 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,838,929
Number of Sequences: 539616
Number of extensions: 2619168
Number of successful extensions: 8500
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 394
Number of HSP's that attempted gapping in prelim test: 7743
Number of HSP's gapped (non-prelim): 703
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)