Query 029052
Match_columns 200
No_of_seqs 121 out of 1061
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_F 60S ribosomal protein L 100.0 1E-56 3.4E-61 374.6 19.5 166 1-170 1-166 (190)
2 3u5e_H L8, RP24, YL11, 60S rib 100.0 2.3E-56 8E-61 372.6 18.4 165 1-170 1-167 (191)
3 4a17_E RPL9, 60S ribosomal pro 100.0 2.1E-56 7.1E-61 372.1 16.2 165 1-170 1-165 (188)
4 2zkr_e 60S ribosomal protein L 100.0 2E-55 6.8E-60 367.3 17.1 164 1-170 1-167 (192)
5 1vq8_E 50S ribosomal protein L 100.0 4E-54 1.4E-58 355.6 17.6 153 7-170 3-155 (178)
6 3j21_F 50S ribosomal protein L 100.0 5.3E-54 1.8E-58 356.6 17.8 154 5-169 6-159 (184)
7 3v2d_H 50S ribosomal protein L 100.0 3.8E-53 1.3E-57 350.4 16.4 153 2-169 1-153 (180)
8 1rl6_A Protein (ribosomal prot 100.0 5.7E-53 1.9E-57 348.5 16.0 152 3-169 1-152 (177)
9 1nkw_E 50S ribosomal protein L 100.0 8.7E-52 3E-56 349.4 19.9 153 2-169 28-180 (212)
10 3r8s_G 50S ribosomal protein L 100.0 1E-52 3.4E-57 346.8 12.9 152 3-169 1-152 (176)
11 3bbo_I Ribosomal protein L6; l 100.0 5E-52 1.7E-56 353.3 9.5 154 1-169 42-196 (223)
12 2zjr_E 50S ribosomal protein L 100.0 7.6E-53 2.6E-57 349.8 0.6 153 2-169 1-153 (185)
13 2cql_A OK/SW-CL.103, 60S ribos 99.9 6.9E-28 2.4E-32 182.2 6.9 91 1-94 8-98 (100)
14 2bol_A TSP36, small heat shock 83.6 3 0.0001 36.4 7.3 45 13-63 125-186 (314)
15 2cql_A OK/SW-CL.103, 60S ribos 72.5 2.9 9.9E-05 30.6 3.2 23 128-153 16-38 (100)
16 3j21_F 50S ribosomal protein L 55.9 11 0.00036 30.5 3.9 21 10-30 122-142 (184)
17 1vq8_E 50S ribosomal protein L 54.6 11 0.00036 30.5 3.6 23 9-31 116-138 (178)
18 4fei_A Heat shock protein-rela 52.1 28 0.00094 24.6 5.3 45 13-63 29-92 (102)
19 3gla_A Low molecular weight he 50.3 45 0.0016 23.1 6.1 18 13-30 27-44 (100)
20 1rl6_A Protein (ribosomal prot 48.7 14 0.00048 29.6 3.5 21 129-152 8-28 (177)
21 3u5e_H L8, RP24, YL11, 60S rib 46.8 17 0.00058 29.5 3.7 21 10-30 126-149 (191)
22 3iz5_F 60S ribosomal protein L 46.5 19 0.00065 29.2 4.0 12 156-167 68-79 (190)
23 2zkr_e 60S ribosomal protein L 45.1 13 0.00043 30.3 2.7 21 129-152 10-30 (192)
24 3v2d_H 50S ribosomal protein L 45.0 16 0.00054 29.4 3.2 13 129-141 9-21 (180)
25 4eld_A MJ16.5-P1, small heat s 44.1 53 0.0018 25.1 6.1 18 13-30 79-96 (161)
26 1nkw_E 50S ribosomal protein L 42.6 16 0.00056 30.2 3.0 21 129-152 36-56 (212)
27 4a17_E RPL9, 60S ribosomal pro 39.9 21 0.0007 28.9 3.2 12 11-22 125-136 (188)
28 3q9p_A Heat shock protein beta 38.0 19 0.00066 24.7 2.4 19 13-31 20-38 (85)
29 2zjr_E 50S ribosomal protein L 35.8 17 0.00059 29.3 2.1 24 9-32 114-138 (185)
30 3r8s_G 50S ribosomal protein L 34.0 29 0.00098 27.7 3.1 23 9-31 113-136 (176)
31 2ctf_A Vigilin; K homology typ 33.9 77 0.0026 22.6 5.2 32 134-167 58-89 (102)
32 3bbo_I Ribosomal protein L6; l 33.6 15 0.00051 30.6 1.4 22 129-153 51-72 (223)
33 2y1y_A Alpha-crystallin B chai 28.0 29 0.00099 23.9 2.0 19 13-31 19-37 (90)
34 2wj5_A Heat shock protein beta 25.8 33 0.0011 24.3 2.0 20 13-32 24-43 (101)
35 2jug_A TUBC protein; docking d 25.7 25 0.00084 23.9 1.2 26 14-39 17-42 (78)
36 3l1e_A Alpha-crystallin A chai 25.5 34 0.0011 24.5 2.0 19 13-31 25-43 (106)
37 2opv_A KHSRP protein; KH domai 21.8 1.5E+02 0.0052 19.9 4.8 21 147-168 63-83 (85)
38 1gme_A Heat shock protein 16.9 21.0 1.6E+02 0.0054 22.2 5.2 19 13-31 66-85 (151)
39 4fqn_A Malcavernin; helical do 20.8 52 0.0018 24.1 2.1 17 153-169 30-46 (98)
No 1
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=1e-56 Score=374.55 Aligned_cols=166 Identities=78% Similarity=1.192 Sum_probs=156.4
Q ss_pred CcccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHh
Q 029052 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (200)
Q Consensus 1 mks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI 80 (200)
||+++.++||.||+||+|+++++.|+|+||+|+|+++|+|.++++.+..++ +.+.++.|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~----~~l~v~~~~~~kk~~a~~gt~rsli 76 (190)
T 3iz5_F 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGG----RKLQVDAWFGTRRTMAAIRTAISHV 76 (190)
T ss_dssp CCCCCCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETTT----TEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CcccccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcCC----CEEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998767888863244 7899999999999999999999999
Q ss_pred hheeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHH
Q 029052 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRS 160 (200)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~ 160 (200)
+|||+|||+||+|+|+++|+|||+.|.++++|+.|+|+||||||||+.++||+||+++++++++|+|+|+|+|||+||||
T Consensus 77 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~ 156 (190)
T 3iz5_F 77 QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRS 156 (190)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHH
T ss_pred HhheeeeccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHH
Confidence 99999999999999999999999888777789999999999999999999999999999998778999999999999999
Q ss_pred HHHHHhhcce
Q 029052 161 AALINQVGLC 170 (200)
Q Consensus 161 AA~Ir~~~~~ 170 (200)
||+||++|++
T Consensus 157 AA~Irq~~~v 166 (190)
T 3iz5_F 157 AALINQKCHV 166 (190)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHhhccc
Confidence 9999999973
No 2
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=2.3e-56 Score=372.60 Aligned_cols=165 Identities=48% Similarity=0.822 Sum_probs=155.5
Q ss_pred CcccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHh
Q 029052 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (200)
Q Consensus 1 mks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI 80 (200)
||+++.+.||.||+||+|+++++.|+|+||+|+|+++|+|..+++.+. ++ +.+.++.|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~-~~----~~l~v~~~~~~kk~~a~~gt~rsli 75 (191)
T 3u5e_H 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKV-NN----QLIKVAVHNGGRKHVAALRTVKSLV 75 (191)
T ss_dssp CCEEEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEE-ET----TEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEe-cC----CeEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999766777732 34 6899999999999999999999999
Q ss_pred hheeeeeccceEEEEEEEEEeecceeEe--ccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHH
Q 029052 81 GNLITGVTKGYRYKMRFVYAHFPINASI--GNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVS 158 (200)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~v--~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vg 158 (200)
+|||+|||+||+|+|+++|+||||+|++ +++|+.|+|+||||||||+.+++|+||++++++++||+|+|+|+|||+||
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vg 155 (191)
T 3u5e_H 76 DNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVS 155 (191)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHH
T ss_pred HhheeeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHH
Confidence 9999999999999999999999999988 77899999999999999999999999999999976689999999999999
Q ss_pred HHHHHHHhhcce
Q 029052 159 RSAALINQVGLC 170 (200)
Q Consensus 159 q~AA~Ir~~~~~ 170 (200)
||||+||++|++
T Consensus 156 q~AA~Irq~~~v 167 (191)
T 3u5e_H 156 QNAADLQQICRV 167 (191)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHhhccc
Confidence 999999999874
No 3
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=2.1e-56 Score=372.13 Aligned_cols=165 Identities=38% Similarity=0.725 Sum_probs=155.5
Q ss_pred CcccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHh
Q 029052 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (200)
Q Consensus 1 mks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI 80 (200)
||+++.++||.||+||+|+++++.|+|+||+|+|+++|+|.++++.+. ++ +.+.++.|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~-~~----~~l~v~~~~~~kk~~a~~gt~rsli 75 (188)
T 4a17_E 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKP-TA----DNVKLQIWQASRKERAVLQSIASQI 75 (188)
T ss_dssp CCEEEEEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCC-BT----TBCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEc-cC----CeEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999767777752 34 6899999999999999999999999
Q ss_pred hheeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHH
Q 029052 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRS 160 (200)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~ 160 (200)
+|||+|||+||+|+|+++|+|||+.|.++++|+.|+|+||||||||+.++||+||++++++++||+|+|+|+|||+||||
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq~ 155 (188)
T 4a17_E 76 KNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQT 155 (188)
T ss_dssp HHHHHHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHHH
T ss_pred HhheEeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHHH
Confidence 99999999999999999999999888887789999999999999999999999999999998778999999999999999
Q ss_pred HHHHHhhcce
Q 029052 161 AALINQVGLC 170 (200)
Q Consensus 161 AA~Ir~~~~~ 170 (200)
||+||++|++
T Consensus 156 AA~Ir~~~~v 165 (188)
T 4a17_E 156 CALIHQSCLV 165 (188)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHhhccc
Confidence 9999999874
No 4
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2e-55 Score=367.28 Aligned_cols=164 Identities=56% Similarity=0.897 Sum_probs=144.6
Q ss_pred CcccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccE---EEEEecCCChhhhhhhHhHH
Q 029052 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRK---LKIDAWFGSRKTSAAIRTAL 77 (200)
Q Consensus 1 mks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~---l~i~~~~~~kk~ra~~GT~r 77 (200)
||....+.||+||+||+|+++++.|+|+||+|+|+++|+++.+++.+ ++ +. +.+++|+++++++|+|||+|
T Consensus 1 Mk~~~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~--~~----~~~~~i~v~~~~~~k~~~a~~Gt~r 74 (192)
T 2zkr_e 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSL--LG----KKKKRLRVDKWWGNRKELATVRTIC 74 (192)
T ss_dssp ---------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEE--ET----TTTCEEEEECSCCCHHHHHHHHHHH
T ss_pred CCcccccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEE--ec----CceeEEEEEcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999975678775 33 45 99999999999999999999
Q ss_pred HHhhheeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHH
Q 029052 78 SHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELV 157 (200)
Q Consensus 78 slI~NmI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~V 157 (200)
|||+|||+|||+||+|+|+++|+|||+.++++++|+.|+|+|+||||||+.++||+||+++++++.||+|+|+|+|||+|
T Consensus 75 sli~NmI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~V 154 (192)
T 2zkr_e 75 SHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELV 154 (192)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHH
T ss_pred HHHhCEEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHH
Confidence 99999999999999999999999998665587778999999999999999999999999999987557999999999999
Q ss_pred HHHHHHHHhhcce
Q 029052 158 SRSAALINQVGLC 170 (200)
Q Consensus 158 gq~AA~Ir~~~~~ 170 (200)
|||||+||++|++
T Consensus 155 gq~AA~IR~~~~v 167 (192)
T 2zkr_e 155 SNSAALIQQATTV 167 (192)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHhhCcC
Confidence 9999999999986
No 5
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=4e-54 Score=355.63 Aligned_cols=153 Identities=32% Similarity=0.513 Sum_probs=145.2
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHhhheeee
Q 029052 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86 (200)
Q Consensus 7 k~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI~NmI~G 86 (200)
++||+||+||+|+++++.|+|+||+|+|+++|+|+.+++.+ ++ +.+.+++|+++++++|+|||+||||+|||+|
T Consensus 3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~--~~----~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~G 76 (178)
T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSV--DG----DTVVIESDEDNAKTMSTIGTFQSHIENMFHG 76 (178)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEE--ET----TEEEEECSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEE--EC----CEEEEEcCCCCHHHHHHHHHHHHHHcCEEEE
Confidence 57999999999999999999999999999999666888886 44 6899999999999999999999999999999
Q ss_pred eccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHHHHHHHh
Q 029052 87 VTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166 (200)
Q Consensus 87 Vt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~AA~Ir~ 166 (200)
||+||+|+|+++|+||||||++ +|+.|+|+|+||||||+.+++|+||++++++ |+|+|+|+|||+||||||+||+
T Consensus 77 Vt~Gf~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~---~~I~v~G~Dkq~Vgq~AA~Ir~ 151 (178)
T 1vq8_E 77 VTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG---EELTVSGPDIEAVGQTAADIEQ 151 (178)
T ss_dssp HHTCEEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET---TEEEEEESCHHHHHHHHHHHHH
T ss_pred EccCeEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEeC---CEEEEEECCHHHHHHHHHHHhc
Confidence 9999999999999999999999 7899999999999999999999999999987 5999999999999999999999
Q ss_pred hcce
Q 029052 167 VGLC 170 (200)
Q Consensus 167 ~~~~ 170 (200)
+++.
T Consensus 152 ~r~p 155 (178)
T 1vq8_E 152 LTRI 155 (178)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9875
No 6
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.3e-54 Score=356.57 Aligned_cols=154 Identities=38% Similarity=0.647 Sum_probs=146.5
Q ss_pred ccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHhhhee
Q 029052 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLI 84 (200)
Q Consensus 5 igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI~NmI 84 (200)
.-++||+||+||+|+++++.|+|+||+|+|+++|+|+++++.+ ++ +.+.++.|+++|+++|+|||+||||+|||
T Consensus 6 ~~~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~--~~----~~l~v~~~~~~kk~~a~~gt~rsli~NmI 79 (184)
T 3j21_F 6 WIREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT--ED----GNVVIYKDFPRRKDVAIARTFAAHIRNMI 79 (184)
T ss_dssp SCEEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEE--ET----TEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred heeEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEE--eC----CEEEEEECCCCHHHHHHHHHHHHHHHhhh
Confidence 4478999999999999999999999999999999877888886 44 68999999999999999999999999999
Q ss_pred eeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHHHHHH
Q 029052 85 TGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALI 164 (200)
Q Consensus 85 ~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~AA~I 164 (200)
+|||+||+|+|+++|+||||||++ +|+.|+|+||||||||+.++||+||++++++ ++|+|+|+|||+|||+||+|
T Consensus 80 ~GVt~Gf~~kL~lvgvgypira~~--~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~---~~Iil~G~Dke~Vgq~AA~I 154 (184)
T 3j21_F 80 KGVTEGFTYKLKVVYSHFPISVKV--QGDEVIIENFLGEKAPRKAKILPGVTVKVRG---QEIIVEGIDKEAVGQTAANI 154 (184)
T ss_dssp HHHHTCEEEEEEEECSSSCCEEEE--ETTEEEEECGGGCSSCEEEECCTTEEEEEET---TEEEEEESCHHHHHHHHHHH
T ss_pred eeeccCeEEEEEEEEecccceEEE--cCCEEEEEecCCccccEEEECCCCeEEEecC---CEEEEEECCHHHHHHHHHHH
Confidence 999999999999999999999999 6999999999999999999999999999987 39999999999999999999
Q ss_pred Hhhcc
Q 029052 165 NQVGL 169 (200)
Q Consensus 165 r~~~~ 169 (200)
|++|+
T Consensus 155 r~~~~ 159 (184)
T 3j21_F 155 EQATR 159 (184)
T ss_dssp HHHHC
T ss_pred hhccc
Confidence 99998
No 7
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=3.8e-53 Score=350.38 Aligned_cols=153 Identities=18% Similarity=0.336 Sum_probs=145.4
Q ss_pred cccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHhh
Q 029052 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (200)
Q Consensus 2 ks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI~ 81 (200)
+||+|+.||.||+||+|+++++.|+|+||+|+|+++|+| ++++.+ ++ +.+.|+.|+++++++|+|||+||||+
T Consensus 1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~-~v~i~~--~~----~~l~v~~~~~~kk~~a~~gt~rsli~ 73 (180)
T 3v2d_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSP-EMRVVV--EE----GVVRVERPSDERRHKSLHGLTRTLIA 73 (180)
T ss_dssp -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCT-TSEEEE--ET----TEEEEECSCSCHHHHHHHHHHHHHHH
T ss_pred CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCC-CEEEEE--EC----CEEEEEECCCcHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999997 888886 44 68999999999999999999999999
Q ss_pred heeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHHH
Q 029052 82 NLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSA 161 (200)
Q Consensus 82 NmI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~A 161 (200)
|||+|||+||+|+|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+|||||
T Consensus 74 NmI~GVt~Gf~~kL~lvgvgy--ra~~--~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~~--t~Iil~G~Dke~Vgq~A 145 (180)
T 3v2d_H 74 NAVKGVSEGYSKELLIKGIGY--RARL--VGRALEL--TVGFSHPVVVEPPEGITFEVPEP--TRVRVSGIDKQKVGQVA 145 (180)
T ss_dssp HHHHHHHTCEEEEEEEESTTC--EEEE--ETTEEEE--ECSSSSCEEECCCTTCEEECSST--TEEEEEESCHHHHHHHH
T ss_pred hhEEeecCCcEEEEEEEEEee--EEEE--CCCEEEE--EecCCeeEEEECCCCeEEEECCC--CEEEEEECcHHHHHHHH
Confidence 999999999999999999999 5888 7999999 99999999999999999999986 69999999999999999
Q ss_pred HHHHhhcc
Q 029052 162 ALINQVGL 169 (200)
Q Consensus 162 A~Ir~~~~ 169 (200)
|+||+++.
T Consensus 146 A~Ir~~r~ 153 (180)
T 3v2d_H 146 ANIRAIRK 153 (180)
T ss_dssp HHHHHHTC
T ss_pred HHhcccCC
Confidence 99999985
No 8
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=5.7e-53 Score=348.54 Aligned_cols=152 Identities=23% Similarity=0.429 Sum_probs=138.8
Q ss_pred ccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHhhh
Q 029052 3 TILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (200)
Q Consensus 3 s~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI~N 82 (200)
||+|+.||.||+||+|+++++.|+|+||+|+|+++|++ ++++.+ ++ +.+.+++|+++++++|+|||+||||+|
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~~--~~----~~l~v~~~~~~k~~~a~~Gt~rsli~N 73 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHP-DMTITV--EG----NVITVTRPSDEKHHRALHGTTRSLLAN 73 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCT-TCEEEE--ET----TEEEEECSCCSHHHHHHHHHHHHHHHH
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEE--eC----CEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999999999986 888875 44 689999999999999999999999999
Q ss_pred eeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHHHH
Q 029052 83 LITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAA 162 (200)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~AA 162 (200)
||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+||||||
T Consensus 74 mi~GVt~Gf~~~L~lvGvGy--ra~~--~G~~l~l--~LG~Shpv~~~iP~gi~v~v~~~--t~I~v~G~Dkq~Vgq~AA 145 (177)
T 1rl6_A 74 MVEGVSKGYEKALELVGVGY--RASK--QGKKLVL--SVGYSHPVEIEPEEGLEIEVPSQ--TKIIVKGADKQRVGELAA 145 (177)
T ss_dssp HHHHHHTCEEEEEEEESTTC--EEEE--ETTEEEE--ESSSSSCEEECCCTTEEEEEEET--TEEEEEESCHHHHHHHHH
T ss_pred EEEeEcCCcEEEEEEEeece--EEEe--cCCEEEE--EecCCccEEEeCCCCcEEEECCC--CEEEEEeCCHHHHHHHHH
Confidence 99999999999999999999 5998 7999999 99999999999999999999986 699999999999999999
Q ss_pred HHHhhcc
Q 029052 163 LINQVGL 169 (200)
Q Consensus 163 ~Ir~~~~ 169 (200)
+||+++.
T Consensus 146 ~Ir~~R~ 152 (177)
T 1rl6_A 146 NIRAVRP 152 (177)
T ss_dssp HHHTTSC
T ss_pred HHhccCC
Confidence 9999975
No 9
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=8.7e-52 Score=349.36 Aligned_cols=153 Identities=23% Similarity=0.392 Sum_probs=144.5
Q ss_pred cccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHhh
Q 029052 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (200)
Q Consensus 2 ks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI~ 81 (200)
+||||+.||.||+||+|+++++.|+|+||+|+|+++|++ ++++.+ ++ +.+.|++|+++++++|+|||+||||+
T Consensus 28 MSRIgk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~~--e~----~~i~v~~~~~~k~~ra~~Gt~rslI~ 100 (212)
T 1nkw_E 28 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVRQ--DG----DQLLVERPSDAQKHRALHGLTRTLVA 100 (212)
T ss_pred cccccccceecCCCcEEEEeCCEEEEECCCEEEEEECCC-CeEEEE--EC----CEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 478899999999999999999999999999999999986 888875 44 68999999999999999999999999
Q ss_pred heeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHHH
Q 029052 82 NLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSA 161 (200)
Q Consensus 82 NmI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~A 161 (200)
|||+|||+||+|+|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+|||||
T Consensus 101 NMI~GVt~Gf~kkLelvGvGY--ra~~--~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~~--t~Iiv~GiDKq~VGq~A 172 (212)
T 1nkw_E 101 NAVKGVSDGYTINLELRGVGF--RAKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQVA 172 (212)
T ss_pred CEEEeeccCeEEEEEEeeeee--EEEc--CCCEEEE--EccCCccEEEECCCCeEEEeCCC--CEEEEEeCCHHHHHHHH
Confidence 999999999999999999999 5988 7999999 99999999999999999999986 69999999999999999
Q ss_pred HHHHhhcc
Q 029052 162 ALINQVGL 169 (200)
Q Consensus 162 A~Ir~~~~ 169 (200)
|+||+++.
T Consensus 173 A~IR~~R~ 180 (212)
T 1nkw_E 173 ANVRKVRK 180 (212)
T ss_pred HHHhccCC
Confidence 99999875
No 10
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=1e-52 Score=346.79 Aligned_cols=152 Identities=22% Similarity=0.403 Sum_probs=144.1
Q ss_pred ccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHhhh
Q 029052 3 TILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (200)
Q Consensus 3 s~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI~N 82 (200)
||+|+.||.||+||+|+++++.|+|+||+|+|+++|++ ++++.+ ++ +.+.++.|+++++++|+|||+||||+|
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~-~v~i~~--~~----~~l~v~~~~~~k~~~a~~gt~rsli~N 73 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLND-AVEVKH--AD----NTLTFGPRDGYADGWAQAGTARALLNS 73 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCS-SCEEEE--ET----TEEEEECCTTCSSTHHHHHHHHHHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCC-CEEEEE--eC----CEEEEEECCCcHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999986 888886 44 689999999999999999999999999
Q ss_pred eeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHHHH
Q 029052 83 LITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAA 162 (200)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~AA 162 (200)
||+|||+||+|+|+++|+|| ||++ +|+.|.+ +||||||+.++||+||+++++++ |+|+|+|+|||+||||||
T Consensus 74 mI~GVt~Gf~~kL~lvgvgy--ra~~--~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~~--t~Iil~G~Dke~Vgq~AA 145 (176)
T 3r8s_G 74 MVIGVTEGFTKKLQLVGVGY--RAAV--KGNVINL--SLGFSHPVDHQLPAGITAECPTQ--TEIVLKGADKQVIGQVAA 145 (176)
T ss_dssp TTTHHHHCEEECEEEESTTC--EEEC--SSSEEEE--ECSSSSCEEEECCTTCEEEEEET--TEEEEEESCHHHHHHHHH
T ss_pred HhhhcccCeEEEEEEeeeee--EEEe--CCCEEEE--EecCCeeEEEECCCCeEEEECCC--CEEEEEECcHHHHHHHHH
Confidence 99999999999999999999 4998 7999987 99999999999999999999885 699999999999999999
Q ss_pred HHHhhcc
Q 029052 163 LINQVGL 169 (200)
Q Consensus 163 ~Ir~~~~ 169 (200)
+||+++.
T Consensus 146 ~Ir~~R~ 152 (176)
T 3r8s_G 146 DLRAYRR 152 (176)
T ss_dssp HHHHTTC
T ss_pred HhhccCC
Confidence 9999874
No 11
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=5e-52 Score=353.26 Aligned_cols=154 Identities=19% Similarity=0.354 Sum_probs=145.4
Q ss_pred CcccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEE-EEeecCcCCccEEEEEecCCChhhhhhhHhHHHH
Q 029052 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDF-HLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSH 79 (200)
Q Consensus 1 mks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i-~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rsl 79 (200)
++||+|+.||+||+||+|+++++.|+|+||+|+|+++|++ ++++ .+ ++ +.+.+++|+++++++|+|||+|||
T Consensus 42 ~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~~~--e~----~~i~v~~~~~~k~~~a~~Gt~rsl 114 (223)
T 3bbo_I 42 KESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKE--ES----GFLRVKKTVETRRANQMHGLFRTL 114 (223)
T ss_dssp CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCS-SCEEEEC--SS----SCEEEECSSCCTTHHHHHHHHTTT
T ss_pred ccccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEEe--cC----CEEEEEcCCCcHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999986 8888 64 55 689999999999999999999999
Q ss_pred hhheeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHH
Q 029052 80 VGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSR 159 (200)
Q Consensus 80 I~NmI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq 159 (200)
|+|||+|||+||+|+|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+|||
T Consensus 115 I~NMI~GVt~Gf~kkLelvGvGY--ra~~--~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~~--t~Iii~GiDKq~Vgq 186 (223)
T 3bbo_I 115 TDNMVVGVSKGFEKKLILVGVGY--RATV--DGKELVL--NLGFSHPVKMQIPDSLKVKVEEN--TRITVSGYDKSEIGQ 186 (223)
T ss_dssp TTHHHHHTTTCEEECEECCSTTC--CEEE--CSSEEEE--CSSCSSCEEEECCSSEEEECSST--TBCEEEESSSHHHHH
T ss_pred hhcEEEeeccCcEEEEEEeeece--EEEe--cCCEEEE--EeeCCccEEEECCCCeEEEeCCC--CEEEEEeCCHHHHHH
Confidence 99999999999999999999999 5988 7999999 99999999999999999999986 699999999999999
Q ss_pred HHHHHHhhcc
Q 029052 160 SAALINQVGL 169 (200)
Q Consensus 160 ~AA~Ir~~~~ 169 (200)
|||+||+++.
T Consensus 187 ~AA~IR~~R~ 196 (223)
T 3bbo_I 187 FAATVRKWRP 196 (223)
T ss_dssp HHHHTTSSSC
T ss_pred HHHHHhccCC
Confidence 9999999875
No 12
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=7.6e-53 Score=349.84 Aligned_cols=153 Identities=23% Similarity=0.389 Sum_probs=140.8
Q ss_pred cccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHhh
Q 029052 2 KTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (200)
Q Consensus 2 ks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI~ 81 (200)
+||+|+.||.||+||+|+++++.|+|+||+|+|+++|++ ++++.+ ++ +.+.+++|+++++++|+|||+||||+
T Consensus 1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~~--~~----~~i~v~~~~~~k~~~a~~Gt~rslI~ 73 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVRQ--DG----DQLLVERPSDAQKHRALHGLTRTLVA 73 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCS-SSCCBC--CS----SSBBCCCSSCSSHHHHHHHHHHHHHH
T ss_pred CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEE--eC----CEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999999986 777774 44 67999999999999999999999999
Q ss_pred heeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHHH
Q 029052 82 NLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSA 161 (200)
Q Consensus 82 NmI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~A 161 (200)
|||+|||+||+++|+++|+||| |++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+|||||
T Consensus 74 NmI~GVt~Gf~kkL~lvGvGYr--a~~--~G~~l~l--~LG~Shpv~~~iP~gI~v~v~~~--t~I~l~G~DKq~Vgq~A 145 (185)
T 2zjr_E 74 NAVKGVSDGYTINLELRGVGFR--AKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQVA 145 (185)
T ss_dssp HHHHHHHHCEEEEEECBSTTCC--CCC--BTTBCBC--CSSCSSCCBCCCCTTEEEECSST--TEEEEEESSHHHHHHHH
T ss_pred cEEeeeccCcEEEEEEeeeccE--EEE--cCCEEEE--EeeCCccEEEECCCCeEEEECCC--CEEEEEecCHHHHHHHH
Confidence 9999999999999999999995 888 7999999 99999999999999999999986 69999999999999999
Q ss_pred HHHHhhcc
Q 029052 162 ALINQVGL 169 (200)
Q Consensus 162 A~Ir~~~~ 169 (200)
|+||+++.
T Consensus 146 A~Ir~~R~ 153 (185)
T 2zjr_E 146 ANVRKVRK 153 (185)
T ss_dssp HHHHHHTC
T ss_pred HHHhccCC
Confidence 99999975
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.94 E-value=6.9e-28 Score=182.20 Aligned_cols=91 Identities=47% Similarity=0.869 Sum_probs=78.9
Q ss_pred CcccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHh
Q 029052 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (200)
Q Consensus 1 mks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI 80 (200)
|+.+.-++||+||+||+|+++++.|+||||+|+|+++|+|+++++.++ ++. .+.+.|++|+++|++||+|||+||||
T Consensus 8 Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e-~~~--~~~i~v~~~~~~k~~ra~~Gt~RslI 84 (100)
T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLL-GKK--KKRLRVDKWWGNRKELATVRTICSHV 84 (100)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEE-CSS--SCEEEEECCSSSTHHHHHHHHHHHHH
T ss_pred cccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEc-CCc--eeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 444444999999999999999999999999999999999768888863 220 02499999999999999999999999
Q ss_pred hheeeeeccceEEE
Q 029052 81 GNLITGVTKGYRYK 94 (200)
Q Consensus 81 ~NmI~GVt~Gf~~~ 94 (200)
+|||+|||+||+|.
T Consensus 85 ~NMI~GVt~Gf~y~ 98 (100)
T 2cql_A 85 QNMIKGVTLGSGPS 98 (100)
T ss_dssp HHHHHHHHTSCCSC
T ss_pred HhhhEeecCCEEEc
Confidence 99999999999874
No 14
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=83.59 E-value=3 Score=36.40 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCCcEEEEeCcEEEEEcCC----------cEEEEEeeCC-c-----EEEEEeec-CcCCccEEEEEec
Q 029052 13 PDGVKIKINAKIIEVEGPR----------GKLSRDFKHL-N-----LDFHLMTD-EETGKRKLKIDAW 63 (200)
Q Consensus 13 P~~V~V~i~~~~v~VkGp~----------G~L~~~l~~~-~-----v~i~~~~~-~~~~~~~l~i~~~ 63 (200)
|+.++|+++++.|+|+|.+ |+.++.|.-+ . ++..+ + + +.|.|+..
T Consensus 125 ~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~--~~n----GVL~I~lP 186 (314)
T 2bol_A 125 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATI--TTD----DVLVIEAP 186 (314)
T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEE--CSS----SEEEEEEE
T ss_pred hHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEE--eCC----CEEEEEEe
Confidence 5899999999999999976 5667666532 2 44454 4 5 68887654
No 15
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=72.50 E-value=2.9 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=18.0
Q ss_pred EEeCCCCeEEEecCCccCEEEEEecC
Q 029052 128 KVDMLDGVTVVRSEKVKDELILDGND 153 (200)
Q Consensus 128 ~~~IP~gV~v~~~~~~k~~Iii~G~D 153 (200)
.++||+||+|++.+ +.|+++|+-
T Consensus 16 pI~IP~gV~V~i~~---~~VtVKGPk 38 (100)
T 2cql_A 16 TVDIPENVDITLKG---RTVIVKGPR 38 (100)
T ss_dssp EECCCSSCEEEEET---TEEEEEETT
T ss_pred cEEcCCCCEEEEeC---CEEEEECCC
Confidence 45789999999876 478888875
No 16
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.86 E-value=11 Score=30.55 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=11.8
Q ss_pred eEcCCCcEEEEeCcEEEEEcC
Q 029052 10 MDIPDGVKIKINAKIIEVEGP 30 (200)
Q Consensus 10 I~IP~~V~V~i~~~~v~VkGp 30 (200)
+++|+||++++.++.|.++|.
T Consensus 122 ~~ip~gv~v~v~~~~Iil~G~ 142 (184)
T 3j21_F 122 AKILPGVTVKVRGQEIIVEGI 142 (184)
T ss_dssp EECCTTEEEEEETTEEEEEES
T ss_pred EECCCCeEEEecCCEEEEEEC
Confidence 366777777765444444443
No 17
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=54.55 E-value=11 Score=30.47 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=16.3
Q ss_pred eeEcCCCcEEEEeCcEEEEEcCC
Q 029052 9 TMDIPDGVKIKINAKIIEVEGPR 31 (200)
Q Consensus 9 ~I~IP~~V~V~i~~~~v~VkGp~ 31 (200)
.+++|+||++++.++.|.++|..
T Consensus 116 ~~~ip~gi~v~v~~~~I~v~G~D 138 (178)
T 1vq8_E 116 RTTIHGDTDVEIDGEELTVSGPD 138 (178)
T ss_dssp EEECCTTCEEEEETTEEEEEESC
T ss_pred EEeCCCCeEEEEeCCEEEEEECC
Confidence 45788998888776666666643
No 18
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=52.11 E-value=28 Score=24.59 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=31.0
Q ss_pred CCCcEEEEeCcEEEEEcCC-------------cEEEEEeeCC-c-----EEEEEeecCcCCccEEEEEec
Q 029052 13 PDGVKIKINAKIIEVEGPR-------------GKLSRDFKHL-N-----LDFHLMTDEETGKRKLKIDAW 63 (200)
Q Consensus 13 P~~V~V~i~~~~v~VkGp~-------------G~L~~~l~~~-~-----v~i~~~~~~~~~~~~l~i~~~ 63 (200)
|++++|+++++.|+|+|.+ |+..+.|.-+ . ++..+ ++ +.|.|...
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~--~~----GvL~I~lp 92 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASL--AG----GVLTVRFE 92 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEE--ET----TEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEE--EC----CEEEEEEE
Confidence 4789999999999999954 6777766643 1 34444 44 57777654
No 19
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=50.28 E-value=45 Score=23.06 Aligned_cols=18 Identities=17% Similarity=0.663 Sum_probs=16.0
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029052 13 PDGVKIKINAKIIEVEGP 30 (200)
Q Consensus 13 P~~V~V~i~~~~v~VkGp 30 (200)
|++++|+++++.|+|+|.
T Consensus 27 ~edi~v~~~~~~L~I~g~ 44 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGE 44 (100)
T ss_dssp GGGCEEEEETTEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 478999999999999984
No 20
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=48.69 E-value=14 Score=29.60 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=12.6
Q ss_pred EeCCCCeEEEecCCccCEEEEEec
Q 029052 129 VDMLDGVTVVRSEKVKDELILDGN 152 (200)
Q Consensus 129 ~~IP~gV~v~~~~~~k~~Iii~G~ 152 (200)
++||+||+|++.+ +.++++|+
T Consensus 8 I~IP~gV~V~i~~---~~VtVkGp 28 (177)
T 1rl6_A 8 IEIPAGVTVTVNG---NTVTVKGP 28 (177)
T ss_dssp EECCTTCEEEEET---TEEEEEET
T ss_pred eEcCCCCEEEEeC---CEEEEECC
Confidence 4567777776654 25666654
No 21
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=46.76 E-value=17 Score=29.51 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=12.0
Q ss_pred eEcCCCcEEEEeC---cEEEEEcC
Q 029052 10 MDIPDGVKIKINA---KIIEVEGP 30 (200)
Q Consensus 10 I~IP~~V~V~i~~---~~v~VkGp 30 (200)
+++|+||++++.+ ..|.++|.
T Consensus 126 ~~ip~Gv~v~v~~~~kteIil~G~ 149 (191)
T 3u5e_H 126 VPVRDGVTIEFSTNVKDEIVLSGN 149 (191)
T ss_dssp EECCTTEEEEECTTSTTEEEEEES
T ss_pred EECCCCEEEEECCCCCCEEEEEEC
Confidence 3567777776654 34445444
No 22
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=46.51 E-value=19 Score=29.18 Aligned_cols=12 Identities=0% Similarity=0.205 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhh
Q 029052 156 LVSRSAALINQV 167 (200)
Q Consensus 156 ~Vgq~AA~Ir~~ 167 (200)
..|.+.|.|+..
T Consensus 68 ~~gt~rsli~Nm 79 (190)
T 3iz5_F 68 AIRTAISHVQNL 79 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 345555555543
No 23
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=45.12 E-value=13 Score=30.27 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=12.3
Q ss_pred EeCCCCeEEEecCCccCEEEEEec
Q 029052 129 VDMLDGVTVVRSEKVKDELILDGN 152 (200)
Q Consensus 129 ~~IP~gV~v~~~~~~k~~Iii~G~ 152 (200)
++||+||+|++.+ +.++++|+
T Consensus 10 I~IP~gV~V~i~~---~~VtVkGp 30 (192)
T 2zkr_e 10 VDIPENVDITLKG---RTVIVKGP 30 (192)
T ss_dssp CCCCTTCEEEEET---TEEEEEET
T ss_pred EEcCCCCEEEEeC---CEEEEECC
Confidence 4667777766654 24555554
No 24
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=45.05 E-value=16 Score=29.38 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=7.5
Q ss_pred EeCCCCeEEEecC
Q 029052 129 VDMLDGVTVVRSE 141 (200)
Q Consensus 129 ~~IP~gV~v~~~~ 141 (200)
++||+||+|++.+
T Consensus 9 I~IP~gV~v~i~~ 21 (180)
T 3v2d_H 9 IPVPKGVSVEVAP 21 (180)
T ss_dssp EECCTTCEEEEET
T ss_pred eeCCCCcEEEEeC
Confidence 3566666666544
No 25
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=44.10 E-value=53 Score=25.06 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=16.0
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029052 13 PDGVKIKINAKIIEVEGP 30 (200)
Q Consensus 13 P~~V~V~i~~~~v~VkGp 30 (200)
|++|+|+++++.|+|+|.
T Consensus 79 ~edi~V~~~~~~L~I~g~ 96 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAK 96 (161)
T ss_dssp GGGEEEEEETTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEE
Confidence 478999999999999983
No 26
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=42.56 E-value=16 Score=30.21 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=11.0
Q ss_pred EeCCCCeEEEecCCccCEEEEEec
Q 029052 129 VDMLDGVTVVRSEKVKDELILDGN 152 (200)
Q Consensus 129 ~~IP~gV~v~~~~~~k~~Iii~G~ 152 (200)
+.||+||+|++.+ +.++++|+
T Consensus 36 I~IP~gV~V~i~~---~~VtVKGP 56 (212)
T 1nkw_E 36 IAVPSGVTVNAQD---GVFKVKGP 56 (212)
T ss_pred eecCCCcEEEEeC---CEEEEECC
Confidence 4556666666544 24555554
No 27
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=39.94 E-value=21 Score=28.92 Aligned_cols=12 Identities=33% Similarity=0.349 Sum_probs=7.3
Q ss_pred EcCCCcEEEEeC
Q 029052 11 DIPDGVKIKINA 22 (200)
Q Consensus 11 ~IP~~V~V~i~~ 22 (200)
++|+||++++.+
T Consensus 125 ~ip~gv~v~v~~ 136 (188)
T 4a17_E 125 QALPGVKISRKD 136 (188)
T ss_dssp ECCTTCEEECCT
T ss_pred ECCCCeEEEECC
Confidence 566666666554
No 28
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=38.03 E-value=19 Score=24.71 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=15.6
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029052 13 PDGVKIKINAKIIEVEGPR 31 (200)
Q Consensus 13 P~~V~V~i~~~~v~VkGp~ 31 (200)
|++++|++.++.|+|+|.+
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGKH 38 (85)
T ss_dssp CSEEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 5788889999999888863
No 29
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=35.77 E-value=17 Score=29.33 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=17.9
Q ss_pred eeEcCCCcEEEEeCc-EEEEEcCCc
Q 029052 9 TMDIPDGVKIKINAK-IIEVEGPRG 32 (200)
Q Consensus 9 ~I~IP~~V~V~i~~~-~v~VkGp~G 32 (200)
.++||+||++++.++ .|.++|..=
T Consensus 114 ~~~iP~gI~v~v~~~t~I~l~G~DK 138 (185)
T 2zjr_E 114 IIEPPAGVTFAVPEPTRIDVSGIDK 138 (185)
T ss_dssp BCCCCTTEEEECSSTTEEEEEESSH
T ss_pred EEECCCCeEEEECCCCEEEEEecCH
Confidence 457899999998754 777777653
No 30
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=34.01 E-value=29 Score=27.71 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=15.1
Q ss_pred eeEcCCCcEEEEeC-cEEEEEcCC
Q 029052 9 TMDIPDGVKIKINA-KIIEVEGPR 31 (200)
Q Consensus 9 ~I~IP~~V~V~i~~-~~v~VkGp~ 31 (200)
.+++|+||++++.+ +.|.++|..
T Consensus 113 ~~~ip~gv~v~v~~~t~Iil~G~D 136 (176)
T 3r8s_G 113 DHQLPAGITAECPTQTEIVLKGAD 136 (176)
T ss_dssp EEECCTTCEEEEEETTEEEEEESC
T ss_pred EEECCCCeEEEECCCCEEEEEECc
Confidence 35788888888753 456666654
No 31
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=33.93 E-value=77 Score=22.63 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=22.8
Q ss_pred CeEEEecCCccCEEEEEecCHhHHHHHHHHHHhh
Q 029052 134 GVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167 (200)
Q Consensus 134 gV~v~~~~~~k~~Iii~G~DKe~Vgq~AA~Ir~~ 167 (200)
++.+..|++ .+.|+|+|. ++.|....+.|+..
T Consensus 58 ~v~I~fp~~-~~~ItI~G~-~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 58 KVHIEFTEG-EDKITLEGP-TEDVSVAQEQIEGM 89 (102)
T ss_dssp SSEEEECSS-SCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CcEEEeCCC-CCEEEEECC-HHHHHHHHHHHHHH
Confidence 344445433 268999999 99998888888764
No 32
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=33.58 E-value=15 Score=30.65 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.8
Q ss_pred EeCCCCeEEEecCCccCEEEEEecC
Q 029052 129 VDMLDGVTVVRSEKVKDELILDGND 153 (200)
Q Consensus 129 ~~IP~gV~v~~~~~~k~~Iii~G~D 153 (200)
++||+||+|++.+ +.++++|+-
T Consensus 51 I~IP~gV~V~i~~---~~VtVKGPk 72 (223)
T 3bbo_I 51 IAVPSNVTIALEG---QDLKVKGPL 72 (223)
T ss_dssp CCCSTTSCEEESS---SEEEECCSS
T ss_pred eecCCCCEEEEeC---CEEEEECCC
Confidence 4678888888765 367777764
No 33
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=28.04 E-value=29 Score=23.94 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=16.2
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029052 13 PDGVKIKINAKIIEVEGPR 31 (200)
Q Consensus 13 P~~V~V~i~~~~v~VkGp~ 31 (200)
|++++|++.++.|+|+|..
T Consensus 19 ~edi~V~v~~~~L~I~g~~ 37 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKH 37 (90)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 3688999999999999965
No 34
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=25.76 E-value=33 Score=24.25 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=16.7
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029052 13 PDGVKIKINAKIIEVEGPRG 32 (200)
Q Consensus 13 P~~V~V~i~~~~v~VkGp~G 32 (200)
|++++|++.++.|+|+|-+.
T Consensus 24 ~edI~V~v~~~~L~I~g~~~ 43 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHE 43 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 46889999999999998763
No 35
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=25.71 E-value=25 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.488 Sum_probs=21.0
Q ss_pred CCcEEEEeCcEEEEEcCCcEEEEEee
Q 029052 14 DGVKIKINAKIIEVEGPRGKLSRDFK 39 (200)
Q Consensus 14 ~~V~V~i~~~~v~VkGp~G~L~~~l~ 39 (200)
.||.+.++++.+.++.|+|.++-.+.
T Consensus 17 ~gi~l~~eg~kLr~~ap~g~l~~~l~ 42 (78)
T 2jug_A 17 LGVRLWVEGERLRFQAPPGVMTPELQ 42 (78)
T ss_dssp HTCEEEEETTEEEEECCTTTTCHHHH
T ss_pred cCCEEEEECCEeeeecCccccCHHHH
Confidence 37888999999999999998774443
No 36
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=25.46 E-value=34 Score=24.49 Aligned_cols=19 Identities=21% Similarity=0.714 Sum_probs=16.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029052 13 PDGVKIKINAKIIEVEGPR 31 (200)
Q Consensus 13 P~~V~V~i~~~~v~VkGp~ 31 (200)
|++++|+++++.|+|+|..
T Consensus 25 ~edi~V~v~~~~L~I~g~~ 43 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKH 43 (106)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 5789999999999999953
No 37
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=21.81 E-value=1.5e+02 Score=19.91 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.6
Q ss_pred EEEEecCHhHHHHHHHHHHhhc
Q 029052 147 LILDGNDIELVSRSAALINQVG 168 (200)
Q Consensus 147 Iii~G~DKe~Vgq~AA~Ir~~~ 168 (200)
+.|+| |.+.+-.....|+.+.
T Consensus 63 v~I~G-~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 63 LRIIG-DPYKVQQACEMVMDIL 83 (85)
T ss_dssp EEEEE-CHHHHHHHHHHHHHHH
T ss_pred EEEEe-CHHHHHHHHHHHHHHh
Confidence 99999 9999988888887653
No 38
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=20.99 E-value=1.6e+02 Score=22.16 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=15.5
Q ss_pred CCCcEEEE-eCcEEEEEcCC
Q 029052 13 PDGVKIKI-NAKIIEVEGPR 31 (200)
Q Consensus 13 P~~V~V~i-~~~~v~VkGp~ 31 (200)
|++++|++ +++.|+|+|.+
T Consensus 66 kedI~V~v~~~~~L~I~g~~ 85 (151)
T 1gme_A 66 KEEVKVEVEDGNVLVVSGER 85 (151)
T ss_dssp GGGEEEEEETTTEEEEEECC
T ss_pred hHHEEEEEecCCEEEEEEEE
Confidence 36899999 57899999854
No 39
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=20.83 E-value=52 Score=24.10 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=15.4
Q ss_pred CHhHHHHHHHHHHhhcc
Q 029052 153 DIELVSRSAALINQVGL 169 (200)
Q Consensus 153 DKe~Vgq~AA~Ir~~~~ 169 (200)
+.+.+.||||.+|+|+.
T Consensus 30 ~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 30 SSQEIQQFAALLHEYRN 46 (98)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 57889999999999987
Done!