RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029052
(200 letters)
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F
1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H
Length = 191
Score = 209 bits (534), Expect = 1e-69
Identities = 79/169 (46%), Positives = 118/169 (69%), Gaps = 7/169 (4%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + +++P+GV + I ++I++V GPRG L+++ KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI--GNANKSIEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + K IE+R
Sbjct: 56 AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
NFLG+KK+R V + DGVT+ S VKDE++L GN +E VS++AA + Q+
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQI 164
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_F
Length = 190
Score = 202 bits (515), Expect = 8e-67
Identities = 130/167 (77%), Positives = 151/167 (90%), Gaps = 4/167 (2%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTIL+SETM+IP+GV +++ AK++ VEGPRGKL+R+FKHLNLDF L G RKL++
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQL----LEGGRKLQV 56
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N +IEIRNF
Sbjct: 57 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
LGEKKVRKVDML+GVT++RSEKVKDEL+LDGNDIELVSRSAALINQ
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQK 163
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_E 4a1c_E 4a1e_E
Length = 188
Score = 201 bits (512), Expect = 2e-66
Identities = 61/166 (36%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+ +L+ + IPD V I +++EV+GP G + R F++ ++D ++ +K+
Sbjct: 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDI-----QKPTADNVKL 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
W SRK A +++ S + N+I GVT+GY++KM+ +AHFPI ++ SIEI++F
Sbjct: 56 QIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHF 115
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK++R++ L GV + R ++ K+ L L G D+ VS++ ALI+Q
Sbjct: 116 LGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQ 161
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 192
Score = 198 bits (505), Expect = 3e-65
Identities = 91/166 (54%), Positives = 118/166 (71%), Gaps = 3/166 (1%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ ++ +L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKK---RLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
LGEK +R+V M GV S+ KDELIL+GNDIELVS SAALI Q
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB:
1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E*
1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E*
1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Length = 178
Score = 184 bits (470), Expect = 4e-60
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 5 LSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
+ ++IP+ V + + I VEG G ++R + ++D + + I++
Sbjct: 1 MPRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSV------DGDTVVIESDE 54
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEK 124
+ KT + I T SH+ N+ GVT+G+ Y M Y+HFP+ ++ + I NFLGEK
Sbjct: 55 DNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEK 112
Query: 125 KVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
R+ + V E +EL + G DIE V ++AA I Q+
Sbjct: 113 APRRTTIHGDTDV---EIDGEELTVSGPDIEAVGQTAADIEQL 152
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha
and beta (A+B), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.141.1.1
Length = 100
Score = 108 bits (271), Expect = 4e-31
Identities = 42/91 (46%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ ++ ++L++
Sbjct: 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKK---KRLRV 64
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGY 91
D W+G+RK A +RT SHV N+I GVT G
Sbjct: 65 DKWWGNRKELATVRTICSHVQNMIKGVTLGS 95
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 223
Score = 48.8 bits (117), Expect = 2e-07
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 11 DIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTS 70
+P V I + + ++V+GP G+L+ + + + L++ +R+ +
Sbjct: 52 AVPSNVTIALEGQDLKVKGPLGELALTYP------REVELTKEESGFLRVKKTVETRRAN 105
Query: 71 AAIRTALSHVGNLITGVTKGYRYKM 95
+ N++ GV+KG+ K+
Sbjct: 106 QMHGLFRTLTDNMVVGVSKGFEKKL 130
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G*
2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G*
2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Length = 176
Score = 46.7 bits (112), Expect = 6e-07
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 11 DIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTS 70
+P GV +KIN ++I ++G G+L+R + + L G
Sbjct: 9 VVPAGVDVKINGQVITIKGKNGELTRTLN------DAVEVKHADN-TLTFGPRDGYADGW 61
Query: 71 AAIRTALSHVGNLITGVTKGYRYKM 95
A TA + + +++ GVT+G+ K+
Sbjct: 62 AQAGTARALLNSMVIGVTEGFTKKL 86
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin
resistance, alpha/beta protein; 2.00A {Geobacillus
stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB:
1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H
1eg0_J 487d_J
Length = 177
Score = 45.6 bits (109), Expect = 2e-06
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 11 DIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTS 70
+IP GV + +N + V+GP+G+L+R F + D + + + + +
Sbjct: 9 EIPAGVTVTVNGNTVTVKGPKGELTRTF---HPDMTITVEGNV----ITVTRPSDEKHHR 61
Query: 71 AAIRTALSHVGNLITGVTKGYRYKM 95
A T S + N++ GV+KGY +
Sbjct: 62 ALHGTTRSLLANMVEGVSKGYEKAL 86
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1sm1_E*
Length = 212
Score = 45.3 bits (108), Expect = 2e-06
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 11 DIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTS 70
+P GV + + +V+GP+G+L+ + + L D+ +R ++K
Sbjct: 37 AVPSGVTVNAQDGVFKVKGPKGELTVPY-NTELTVRQDGDQLLVERPSD------AQKHR 89
Query: 71 AAIRTALSHVGNLITGVTKGYRYKM 95
A + V N + GV+ GY +
Sbjct: 90 ALHGLTRTLVANAVKGVSDGYTINL 114
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H
2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H
2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Length = 180
Score = 44.8 bits (107), Expect = 3e-06
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 11 DIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTS 70
+P GV +++ ++V+GP+G+L + + +R R+
Sbjct: 10 PVPKGVSVEVAPGRVKVKGPKGELEVPV-SPEMRVVVEEGVVRVERP------SDERRHK 62
Query: 71 AAIRTALSHVGNLITGVTKGYRYKM 95
+ + + N + GV++GY ++
Sbjct: 63 SLHGLTRTLIANAVKGVSEGYSKEL 87
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E*
1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E*
3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H
1vp0_H
Length = 185
Score = 44.8 bits (107), Expect = 3e-06
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 11 DIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTS 70
+P GV + + +V+GP+G+L+ + + L D+ +R ++K
Sbjct: 10 AVPSGVTVNAQDGVFKVKGPKGELTVPY-NTELTVRQDGDQLLVERPSD------AQKHR 62
Query: 71 AAIRTALSHVGNLITGVTKGYRYKM 95
A + V N + GV+ GY +
Sbjct: 63 ALHGLTRTLVANAVKGVSDGYTINL 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 3e-04
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 39/151 (25%)
Query: 7 SETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
++ M I V++ V RG + + +E G+ + A
Sbjct: 1774 ADVMSIESLVEV--------VFY-RGMTMQ---------VAVPRDELGRSNYGMIAINPG 1815
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFV----YAHFPINAS-----IGNANKSIE- 116
R ++ + AL +V + T V Y N ++++
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGW------LVEIVNY-----NVENQQYVAAGDLRALDT 1864
Query: 117 IRNFLGEKKVRKVDMLDGVTVVRSEKVKDEL 147
+ N L K++K+D+++ + E+V+ L
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 28.9 bits (64), Expect = 1.5
Identities = 31/188 (16%), Positives = 52/188 (27%), Gaps = 65/188 (34%)
Query: 44 DFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALS--------HVGN-------LITGVT 88
F + ++ + + + G R A T+L I+ +T
Sbjct: 291 SFF-----VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 89 KGYRYK-MRFVYAHFPINASIGNANKSIEI------RNFL--GEKKVRKVDMLDG-VTVV 138
+ + +H P A K +EI +N + G + L G +
Sbjct: 346 QEQVQDYVNKTNSHLP-------AGKQVEISLVNGAKNLVVSGPPQS-----LYGLNLTL 393
Query: 139 RSEKVKDELILDGNDIELVSRSAALINQVGLCVCLCVCVRNLPV--------LT-ARSFI 189
R K LD + I R N+ LPV L A I
Sbjct: 394 RKAKAPSG--LDQSRIPFSERKLKFSNRF------------LPVASPFHSHLLVPASDLI 439
Query: 190 LTEMPCEE 197
++
Sbjct: 440 NKDLVKNN 447
>1s5d_A Cholera enterotoxin, A chain; heat-labIle enterotoxin, ADP ribose
transfera toxins, transferase,toxin; HET: GAL; 1.75A
{Vibrio cholerae} SCOP: d.166.1.1 PDB: 1s5c_A 1s5b_A*
1s5e_A* 1s5f_A* 1lt3_A* 1lt4_A* 1xtc_A 2a5d_B* 2a5f_B*
2a5g_B* 1lti_A* 1ltg_A 1htl_A 1lta_A* 1lts_A 1ltb_A
1ltt_A* 1xtc_C
Length = 240
Score = 32.9 bits (74), Expect = 0.048
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 30 PRGKLSRDFKHLNLDFHL---MTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86
PRG+ + ++ +L +TG + D + TS ++R+A +++G
Sbjct: 24 PRGQSESFDRGTQMNINLYDHARGTQTGFVRHD-DGYVS---TSISLRSAHLVGQTILSG 79
Query: 87 VTKGYRYKMRFVYAHFPINASIGNAN 112
+ Y Y + F +N +G +
Sbjct: 80 HSTYYIYVIATAPNMFNVNDVLGAYS 105
>1tii_A LT-IIB, heat labIle enterotoxin type IIB; ADP-ribosyl transferase,
ADP-ribosylation, ganglioside receptor; 2.25A
{Escherichia coli} SCOP: d.166.1.1
Length = 190
Score = 32.1 bits (72), Expect = 0.071
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 30 PRGKLSRDFKHLNLDFHL---MTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86
PRG+ + ++ +L TG + D + T+ +R A N++ G
Sbjct: 22 PRGQDEAYERGTPININLYDHARGTATGNTRYN-DGYVS---TTTTLRQAHLLGQNMLGG 77
Query: 87 VTKGYRYKMRFVYAHFPINASIGNAN 112
+ Y Y + F +N +G +
Sbjct: 78 YNEYYIYVVAAAPNLFDVNGVLGRYS 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.17
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 27/100 (27%)
Query: 31 RGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKG 90
+ F+ + LDF + ++K+ R S A A + N + +
Sbjct: 486 HPERMTLFRMVFLDFRFL------EQKI--------RHDSTA-WNASGSILNTLQQLKF- 529
Query: 91 YRYKMRFVYAHFPINASIGNANKSIEIRNFL---GEKKVR 127
YK ++ + P + NA I +FL E +
Sbjct: 530 --YK-PYICDNDPKYERLVNA-----ILDFLPKIEENLIC 561
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 27.1 bits (59), Expect = 4.1
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 42 NLDFHLMTDEETGKRKLKIDAWF---GSRKTSAAIRTALSHVGNLITGVTKG 90
N + L+ D E + L +D W GS ++ A+ A +H + V +G
Sbjct: 83 NTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRG 134
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 26.8 bits (60), Expect = 4.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 134 GVTVVRS---EKVKDELILDGNDIELVSRSAALINQVGL--CVC 172
VT + S + +KDEL+++ + I+ V + + GL VC
Sbjct: 118 AVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVC 161
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory
protein, transcription; 3.00A {Enterobacteria phage T4}
Length = 115
Score = 26.0 bits (56), Expect = 5.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 12 IPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHL 47
IP G+ KI ++ I+ R + R K LDF L
Sbjct: 80 IPSGIIEKIQSEAIDENLLRPSVVRCEKTNTLDFLL 115
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 113
Score = 25.8 bits (57), Expect = 6.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 32 GKLSRDFKHLNLDFHLMTDEETGKRK 57
G + + + H+ D+ETGK K
Sbjct: 40 GVVKMNKRTGQPMIHIYLDKETGKPK 65
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 26.8 bits (59), Expect = 6.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 135 VTVVRSEKVKDELILDGNDIELVS 158
VR L L+G D++LVS
Sbjct: 61 SQAVRHGASDAPLRLNGEDLKLVS 84
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR
{Homo sapiens}
Length = 116
Score = 25.4 bits (56), Expect = 7.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 24 IIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRK 57
+ + G + + K +L TD ETGK K
Sbjct: 24 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLK 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,958,271
Number of extensions: 171957
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 30
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)