RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029052
(200 letters)
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 105 bits (264), Expect = 2e-30
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 91 YRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILD 150
+ Y M Y+HFP+ ++ + I NFLGEK R+ + V E +EL +
Sbjct: 1 WEYGMEVFYSHFPMQVNVE--GDEVVIENFLGEKAPRRTTIHGDTDV---EIDGEELTVS 55
Query: 151 GNDIELVSRSAALINQ 166
G DIE V ++AA I Q
Sbjct: 56 GPDIEAVGQTAADIEQ 71
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 86.9 bits (215), Expect = 2e-23
Identities = 42/90 (46%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Query: 1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V I + + + V+GPRG L RDF H+N++ L+ ++ ++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKK---KRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKG 90
D W+G+RK A +RT SHV N+I GVT G
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLG 87
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 62.2 bits (151), Expect = 6e-14
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 11 DIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTS 70
+IP+ V + + I VEG G ++R + ++D + I++ + KT
Sbjct: 6 EIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDV------SVDGDTVVIESDEDNAKTM 59
Query: 71 AAIRTALSHVGNLITGVTKG 90
+ I T SH+ N+ GVT+G
Sbjct: 60 STIGTFQSHIENMFHGVTEG 79
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 61.7 bits (150), Expect = 9e-14
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 12 IPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSA 71
+P GV + + +V+GP+G+L+ ++ +L ++ ++K A
Sbjct: 7 VPSGVTVNAQDGVFKVKGPKGELTV-------PYNTELTVRQDGDQLLVERPSDAQKHRA 59
Query: 72 AIRTALSHVGNLITGVTKG 90
+ V N + GV+ G
Sbjct: 60 LHGLTRTLVANAVKGVSDG 78
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 61.3 bits (149), Expect = 9e-14
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 13 PDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAA 72
P GV +++ ++V+GP+G+L + ++++ R+ +
Sbjct: 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRV-------VVEEGVVRVERPSDERRHKSL 53
Query: 73 IRTALSHVGNLITGVTKG 90
+ + N + GV++G
Sbjct: 54 HGLTRTLIANAVKGVSEG 71
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 59.4 bits (144), Expect = 7e-13
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 12 IPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSA 71
+P GV +KIN ++I ++G G+L+R + + + L G A
Sbjct: 10 VPAGVDVKINGQVITIKGKNGELTR-------TLNDAVEVKHADNTLTFGPRDGYADGWA 62
Query: 72 AIRTALSHVGNLITGVTKG 90
TA + + +++ GVT+G
Sbjct: 63 QAGTARALLNSMVIGVTEG 81
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 58.7 bits (142), Expect = 1e-12
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 12 IPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSA 71
IP GV + +N + V+GP+G+L+R F +T E + + + A
Sbjct: 4 IPAGVTVTVNGNTVTVKGPKGELTRTFHP----DMTITVEG---NVITVTRPSDEKHHRA 56
Query: 72 AIRTALSHVGNLITGVTKG 90
T S + N++ GV+KG
Sbjct: 57 LHGTTRSLLANMVEGVSKG 75
>g1tii.1 d.166.1.1 (A:,C:) Heat-labile toxin, A-chain {Escherichia
coli, type IIB [TaxId: 562]}
Length = 223
Score = 30.3 bits (68), Expect = 0.10
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 41 LNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYA 100
+N++ + D + T+ +R A N++ G + Y Y +
Sbjct: 35 ININLYDHARGTATGNTRYNDGYVS---TTTTLRQAHLLGQNMLGGYNEYYIYVVAAAPN 91
Query: 101 HFPINASIG 109
F +N +G
Sbjct: 92 LFDVNGVLG 100
>d1s5da_ d.166.1.1 (A:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Length = 235
Score = 30.0 bits (67), Expect = 0.16
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 30 PRGKLSRDFKHLNLDFHL---MTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86
PRG+ + ++ +L +TG + D + TS ++R+A +++G
Sbjct: 24 PRGQSESFDRGTQMNINLYDHARGTQTGFVRHD-DGYVS---TSISLRSAHLVGQTILSG 79
Query: 87 VTKGYRYKMRFVYAHFPINASIG 109
+ Y Y + F +N +G
Sbjct: 80 HSTYYIYVIATAPNMFNVNDVLG 102
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 26.5 bits (58), Expect = 2.7
Identities = 2/35 (5%), Positives = 16/35 (45%)
Query: 111 ANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKD 145
+ E+ + + + ++ G+ ++ +++ +
Sbjct: 58 HERPCEVIAAVDDFRYHSGELYYGLPIISTDRFTE 92
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
RumA, catalytic domain {Escherichia coli [TaxId: 562]}
Length = 358
Score = 25.0 bits (53), Expect = 7.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 71 AAIRTALSH-VGNLITGVTKGYRYKMRFVYAHFP 103
AA+ + H V +I V GYR + R + P
Sbjct: 32 AALARLMKHDVSEVIADVPWGYRRRARLSLNYLP 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 713,279
Number of extensions: 31854
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 15
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)