Query 029054
Match_columns 200
No_of_seqs 137 out of 557
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3208 SNARE protein GS28 [In 100.0 8.3E-43 1.8E-47 280.7 21.2 196 1-199 25-231 (231)
2 KOG1666 V-SNARE [Intracellular 100.0 2.3E-31 5E-36 213.8 18.7 185 15-200 29-218 (220)
3 KOG3251 Golgi SNAP receptor co 100.0 6.7E-28 1.4E-32 194.6 20.8 171 18-198 29-211 (213)
4 PF12352 V-SNARE_C: Snare regi 99.7 3.9E-16 8.5E-21 105.6 7.7 66 110-175 1-66 (66)
5 PF03908 Sec20: Sec20; InterP 99.1 9.7E-10 2.1E-14 79.1 10.4 71 116-186 7-77 (92)
6 PF05008 V-SNARE: Vesicle tran 98.6 5.2E-07 1.1E-11 62.8 8.7 59 16-78 19-77 (79)
7 KOG0812 SNARE protein SED5/Syn 98.0 0.0051 1.1E-07 52.5 20.7 68 131-198 241-308 (311)
8 KOG1666 V-SNARE [Intracellular 97.4 0.016 3.4E-07 47.6 15.2 112 55-170 65-181 (220)
9 KOG3202 SNARE protein TLG1/Syn 97.1 0.07 1.5E-06 44.7 16.6 150 25-179 49-214 (235)
10 KOG0860 Synaptobrevin/VAMP-lik 96.9 0.016 3.4E-07 43.2 9.7 84 116-199 28-115 (116)
11 PF09753 Use1: Membrane fusion 96.9 0.23 4.9E-06 41.8 18.8 88 110-200 155-249 (251)
12 PF00957 Synaptobrevin: Synapt 96.8 0.024 5.1E-07 40.1 9.6 65 116-180 2-66 (89)
13 KOG3385 V-SNARE [Intracellular 96.1 0.029 6.2E-07 41.7 6.7 88 110-198 28-116 (118)
14 PF04210 MtrG: Tetrahydrometha 94.8 0.11 2.3E-06 35.2 5.4 54 146-199 13-67 (70)
15 KOG0809 SNARE protein TLG2/Syn 92.6 6.3 0.00014 34.1 15.3 57 140-196 241-298 (305)
16 TIGR01149 mtrG N5-methyltetrah 92.5 0.49 1.1E-05 32.0 5.4 47 147-193 14-61 (70)
17 COG4064 MtrG Tetrahydromethano 92.3 0.46 9.9E-06 32.2 5.1 47 147-193 17-65 (75)
18 PRK01026 tetrahydromethanopter 92.2 0.55 1.2E-05 32.5 5.5 47 147-193 17-64 (77)
19 PRK09546 zntB zinc transporter 91.4 8.9 0.00019 33.3 18.8 17 63-79 183-199 (324)
20 PF06008 Laminin_I: Laminin Do 90.4 9.8 0.00021 32.1 13.0 150 18-168 87-243 (264)
21 smart00397 t_SNARE Helical reg 90.2 2.2 4.7E-05 27.3 6.9 57 112-168 7-63 (66)
22 PF01544 CorA: CorA-like Mg2+ 89.9 8.2 0.00018 32.1 11.9 49 24-72 120-168 (292)
23 KOG2678 Predicted membrane pro 89.6 11 0.00024 31.4 13.4 90 109-198 142-236 (244)
24 KOG3065 SNAP-25 (synaptosome-a 88.1 1.6 3.5E-05 37.4 6.3 55 118-172 80-134 (273)
25 PF05739 SNARE: SNARE domain; 87.1 5.4 0.00012 25.7 7.1 59 117-175 4-62 (63)
26 KOG0810 SNARE protein Syntaxin 86.2 22 0.00047 31.0 15.1 53 118-174 210-264 (297)
27 KOG3894 SNARE protein Syntaxin 85.7 8.5 0.00018 33.6 9.3 77 110-186 214-302 (316)
28 PF10779 XhlA: Haemolysin XhlA 84.2 10 0.00023 25.5 7.9 33 166-198 38-70 (71)
29 PRK10884 SH3 domain-containing 83.8 19 0.00042 29.5 10.4 25 164-188 158-182 (206)
30 PF00957 Synaptobrevin: Synapt 83.6 12 0.00027 25.9 9.8 63 127-196 24-86 (89)
31 COG5325 t-SNARE complex subuni 83.3 17 0.00036 31.3 9.9 76 122-197 200-276 (283)
32 PF09889 DUF2116: Uncharacteri 81.8 4.8 0.0001 26.5 4.9 25 167-191 27-51 (59)
33 PF12911 OppC_N: N-terminal TM 81.0 2.6 5.7E-05 26.7 3.5 28 166-193 3-30 (56)
34 TIGR00383 corA magnesium Mg(2+ 80.9 35 0.00075 29.2 18.1 42 30-78 150-191 (318)
35 COG5074 t-SNARE complex subuni 80.9 13 0.00027 31.4 8.2 72 123-195 191-266 (280)
36 PF08693 SKG6: Transmembrane a 79.7 0.79 1.7E-05 27.8 0.6 16 184-199 22-37 (40)
37 PF06008 Laminin_I: Laminin Do 78.8 38 0.00083 28.5 12.4 18 56-73 186-203 (264)
38 PF03904 DUF334: Domain of unk 77.3 42 0.0009 28.1 17.5 56 129-197 111-166 (230)
39 PF08113 CoxIIa: Cytochrome c 73.2 4.7 0.0001 23.3 2.6 14 185-198 11-24 (34)
40 PF09177 Syntaxin-6_N: Syntaxi 71.0 31 0.00068 24.4 7.2 59 16-74 33-96 (97)
41 cd00193 t_SNARE Soluble NSF (N 70.7 19 0.00041 22.3 5.5 51 117-167 6-56 (60)
42 PF10458 Val_tRNA-synt_C: Valy 70.0 29 0.00062 22.9 6.9 56 20-79 6-63 (66)
43 PF04799 Fzo_mitofusin: fzo-li 69.4 33 0.00072 27.4 7.5 28 20-47 111-138 (171)
44 PF12669 P12: Virus attachment 68.6 3.7 7.9E-05 26.8 1.7 15 180-194 2-16 (58)
45 PF05008 V-SNARE: Vesicle tran 68.5 13 0.00028 25.2 4.5 51 19-73 29-79 (79)
46 PF01034 Syndecan: Syndecan do 67.3 1.8 3.8E-05 28.9 -0.0 11 189-199 27-37 (64)
47 KOG0862 Synaptobrevin/VAMP-lik 67.1 69 0.0015 26.6 9.2 62 117-182 134-195 (216)
48 PF08172 CASP_C: CASP C termin 66.9 6.8 0.00015 33.1 3.4 27 54-80 85-111 (248)
49 PF08317 Spc7: Spc7 kinetochor 63.9 1E+02 0.0022 26.9 15.2 33 19-51 72-104 (325)
50 PRK09759 small toxic polypepti 63.2 7.6 0.00017 24.7 2.3 21 178-198 3-23 (50)
51 TIGR01294 P_lamban phospholamb 62.1 17 0.00038 22.5 3.7 25 173-197 25-49 (52)
52 PF09753 Use1: Membrane fusion 61.5 50 0.0011 27.6 7.8 50 110-159 170-223 (251)
53 PF13800 Sigma_reg_N: Sigma fa 60.8 13 0.00029 26.2 3.6 8 167-174 4-11 (96)
54 PF04272 Phospholamban: Phosph 59.0 22 0.00049 22.0 3.8 24 174-197 26-49 (52)
55 PF13997 YqjK: YqjK-like prote 58.9 42 0.00091 22.8 5.6 50 137-190 2-51 (73)
56 PF05084 GRA6: Granule antigen 57.6 15 0.00033 29.2 3.6 27 173-199 146-172 (215)
57 PF03148 Tektin: Tektin family 56.3 1.5E+02 0.0033 26.5 13.5 42 108-149 318-359 (384)
58 COG4640 Predicted membrane pro 55.6 9.1 0.0002 34.6 2.3 21 180-200 53-73 (465)
59 KOG0994 Extracellular matrix g 54.0 2.9E+02 0.0062 29.1 14.1 34 145-178 1605-1638(1758)
60 PF05478 Prominin: Prominin; 53.5 2.4E+02 0.0051 28.0 19.3 25 132-156 358-382 (806)
61 PHA02844 putative transmembran 53.2 20 0.00044 24.6 3.2 19 180-198 51-69 (75)
62 PHA02955 hypothetical protein; 52.8 14 0.00031 30.5 2.8 21 179-199 181-201 (213)
63 PF05545 FixQ: Cbb3-type cytoc 52.4 25 0.00053 21.8 3.4 9 191-199 23-31 (49)
64 PF06024 DUF912: Nucleopolyhed 52.1 14 0.0003 26.7 2.5 18 181-198 64-81 (101)
65 COG0598 CorA Mg2+ and Co2+ tra 51.7 1.6E+02 0.0035 25.5 17.9 23 25-47 143-165 (322)
66 PF09889 DUF2116: Uncharacteri 51.2 41 0.00089 22.0 4.3 27 172-198 29-55 (59)
67 PRK09738 small toxic polypepti 50.4 14 0.00031 23.6 2.0 21 178-198 5-25 (52)
68 PF07798 DUF1640: Protein of u 50.1 1.3E+02 0.0027 23.8 19.3 58 135-197 117-174 (177)
69 PHA02650 hypothetical protein; 50.1 24 0.00052 24.5 3.2 17 181-197 53-69 (81)
70 COG4068 Uncharacterized protei 49.8 40 0.00086 22.2 4.0 23 166-188 31-53 (64)
71 PF11395 DUF2873: Protein of u 49.7 28 0.00062 20.7 3.0 10 190-199 22-31 (43)
72 PF06692 MNSV_P7B: Melon necro 48.5 22 0.00047 23.1 2.6 22 178-199 12-33 (61)
73 PF11190 DUF2976: Protein of u 48.1 20 0.00044 25.4 2.7 22 179-200 62-83 (87)
74 PF01519 DUF16: Protein of unk 47.6 70 0.0015 23.4 5.5 38 138-175 60-97 (102)
75 PF04678 DUF607: Protein of un 47.2 1E+02 0.0023 24.4 7.1 35 151-185 63-99 (180)
76 PF08372 PRT_C: Plant phosphor 47.2 35 0.00076 26.8 4.2 26 125-150 63-88 (156)
77 PHA03054 IMV membrane protein; 46.4 31 0.00067 23.5 3.2 18 181-198 52-69 (72)
78 PHA03164 hypothetical protein; 46.2 32 0.00068 23.8 3.3 22 165-186 45-67 (88)
79 PF10805 DUF2730: Protein of u 45.8 1.1E+02 0.0025 22.1 9.1 54 25-81 38-91 (106)
80 PHA02819 hypothetical protein; 45.5 32 0.0007 23.4 3.2 19 180-198 49-67 (71)
81 PHA02975 hypothetical protein; 45.3 33 0.00071 23.2 3.2 18 181-198 48-65 (69)
82 PHA02692 hypothetical protein; 44.8 34 0.00073 23.2 3.2 15 184-198 53-67 (70)
83 KOG0976 Rho/Rac1-interacting s 43.9 2.8E+02 0.006 28.0 10.2 28 63-90 404-431 (1265)
84 PF13800 Sigma_reg_N: Sigma fa 43.8 45 0.00097 23.5 4.0 14 169-182 2-15 (96)
85 PF12575 DUF3753: Protein of u 43.7 37 0.00079 23.2 3.3 17 181-197 52-68 (72)
86 PF02439 Adeno_E3_CR2: Adenovi 43.0 44 0.00096 19.9 3.2 13 180-192 8-20 (38)
87 PF04880 NUDE_C: NUDE protein, 42.9 30 0.00066 27.5 3.2 50 25-77 3-52 (166)
88 PRK06287 cobalt transport prot 42.7 27 0.00058 25.6 2.8 19 180-198 79-97 (107)
89 PF10168 Nup88: Nuclear pore c 42.4 3.4E+02 0.0073 26.7 10.9 26 135-160 689-714 (717)
90 PF04065 Not3: Not1 N-terminal 42.2 1.1E+02 0.0024 25.7 6.7 28 21-48 4-31 (233)
91 PF03980 Nnf1: Nnf1 ; InterPr 42.1 1.3E+02 0.0028 21.6 8.2 27 20-46 25-51 (109)
92 KOG2062 26S proteasome regulat 41.4 1.1E+02 0.0025 30.2 7.3 72 110-181 594-683 (929)
93 COG4420 Predicted membrane pro 41.0 51 0.0011 26.8 4.3 44 123-166 16-59 (191)
94 PRK14750 kdpF potassium-transp 40.8 61 0.0013 18.1 3.3 17 180-196 5-21 (29)
95 PF01102 Glycophorin_A: Glycop 40.5 32 0.0007 25.9 2.9 11 180-190 72-82 (122)
96 KOG2150 CCR4-NOT transcription 40.1 1.1E+02 0.0025 28.9 6.9 30 20-49 3-32 (575)
97 KOG4603 TBP-1 interacting prot 39.5 1.5E+02 0.0032 23.9 6.6 59 17-75 78-143 (201)
98 PF01848 HOK_GEF: Hok/gef fami 38.8 23 0.00049 21.7 1.5 17 182-198 4-20 (43)
99 PF10960 DUF2762: Protein of u 38.6 30 0.00064 23.6 2.2 15 184-198 13-27 (71)
100 PF13190 PDGLE: PDGLE domain 37.7 44 0.00095 23.5 3.1 20 180-199 67-86 (88)
101 PF08776 VASP_tetra: VASP tetr 35.9 1E+02 0.0022 18.6 4.3 27 60-87 9-35 (40)
102 PHA02849 putative transmembran 35.8 45 0.00097 23.2 2.8 14 181-194 20-33 (82)
103 PRK03814 oxaloacetate decarbox 35.4 45 0.00098 23.4 2.9 9 188-196 22-30 (85)
104 PRK10856 cytoskeletal protein 34.9 35 0.00075 30.1 2.7 28 171-198 103-133 (331)
105 PF08802 CytB6-F_Fe-S: Cytochr 34.0 1.1E+02 0.0023 18.4 4.1 17 170-186 5-21 (39)
106 COG4736 CcoQ Cbb3-type cytochr 33.9 59 0.0013 21.4 3.0 16 184-199 14-31 (60)
107 PF10779 XhlA: Haemolysin XhlA 33.8 1.4E+02 0.0031 19.8 8.4 34 147-193 36-69 (71)
108 KOG4782 Predicted membrane pro 33.3 49 0.0011 23.8 2.7 19 180-198 60-78 (108)
109 KOG0862 Synaptobrevin/VAMP-lik 32.9 1.5E+02 0.0032 24.7 5.8 15 62-76 86-100 (216)
110 TIGR02115 potass_kdpF K+-trans 32.9 64 0.0014 17.6 2.5 16 182-197 2-17 (26)
111 PF07889 DUF1664: Protein of u 32.7 2.1E+02 0.0046 21.6 6.3 50 117-166 68-117 (126)
112 PF06696 Strep_SA_rep: Strepto 32.4 88 0.0019 16.9 4.1 20 59-78 2-21 (25)
113 PF02932 Neur_chan_memb: Neuro 32.4 51 0.0011 24.9 3.1 22 176-197 216-237 (237)
114 PF06422 PDR_CDR: CDR ABC tran 32.0 51 0.0011 23.8 2.8 6 177-182 50-55 (103)
115 PF02167 Cytochrom_C1: Cytochr 31.8 51 0.0011 27.4 3.0 19 182-200 195-213 (219)
116 PF09813 Coiled-coil_56: Coile 31.4 72 0.0016 23.2 3.4 22 176-197 48-69 (100)
117 PRK14759 potassium-transportin 31.2 99 0.0021 17.3 3.2 18 180-197 5-22 (29)
118 PF10267 Tmemb_cc2: Predicted 30.7 4.1E+02 0.009 24.1 16.3 24 67-90 242-265 (395)
119 PF03908 Sec20: Sec20; InterP 30.2 1.9E+02 0.0042 20.1 10.9 50 135-195 40-89 (92)
120 COG3763 Uncharacterized protei 30.1 79 0.0017 21.5 3.2 18 181-198 7-24 (71)
121 PF14523 Syntaxin_2: Syntaxin- 29.4 2E+02 0.0043 20.0 7.1 23 56-78 72-94 (102)
122 TIGR02978 phageshock_pspC phag 29.0 1E+02 0.0022 23.1 4.0 32 17-48 79-110 (121)
123 PF14712 Snapin_Pallidin: Snap 28.6 2E+02 0.0043 19.8 7.8 30 57-86 59-88 (92)
124 COG1476 Predicted transcriptio 28.4 69 0.0015 21.6 2.7 33 156-188 19-51 (68)
125 PHA02657 hypothetical protein; 28.3 69 0.0015 22.7 2.8 10 184-193 33-42 (95)
126 PF11174 DUF2970: Protein of u 28.2 90 0.002 20.1 3.1 17 180-196 33-49 (56)
127 PHA03010 hypothetical protein; 28.1 76 0.0017 28.6 3.6 23 23-45 291-313 (546)
128 PTZ00234 variable surface prot 28.1 46 0.001 30.5 2.4 17 170-187 358-375 (433)
129 PF07531 TAFH: NHR1 homology t 27.9 76 0.0016 22.9 3.0 68 2-72 11-78 (96)
130 PRK10697 DNA-binding transcrip 27.8 1.1E+02 0.0024 22.9 4.0 33 16-48 75-107 (118)
131 PF04999 FtsL: Cell division p 27.6 1.4E+02 0.0031 20.8 4.5 21 166-186 4-24 (97)
132 PF04226 Transgly_assoc: Trans 27.4 98 0.0021 19.1 3.1 19 182-200 30-48 (48)
133 TIGR03752 conj_TIGR03752 integ 27.2 1.8E+02 0.0038 27.1 5.9 52 110-161 83-135 (472)
134 PF05933 Fun_ATP-synt_8: Funga 27.1 62 0.0013 20.4 2.1 14 187-200 16-29 (48)
135 KOG3065 SNAP-25 (synaptosome-a 27.0 1.8E+02 0.004 25.0 5.7 53 118-170 219-271 (273)
136 PF08173 YbgT_YccB: Membrane b 26.5 1.3E+02 0.0027 16.8 3.2 20 179-198 5-24 (28)
137 PHA02662 ORF131 putative membr 26.1 1.2E+02 0.0026 25.3 4.2 16 179-194 187-202 (226)
138 PF06596 PsbX: Photosystem II 26.0 1.4E+02 0.0029 18.0 3.4 20 180-199 12-31 (39)
139 PRK10299 PhoPQ regulatory prot 26.0 88 0.0019 19.5 2.6 15 180-194 7-21 (47)
140 cd07669 BAR_SNX33 The Bin/Amph 25.6 1.7E+02 0.0038 24.1 5.1 53 23-79 6-58 (207)
141 PF03818 MadM: Malonate/sodium 25.4 1.1E+02 0.0023 20.2 3.1 27 173-200 6-32 (60)
142 cd07668 BAR_SNX9 The Bin/Amphi 25.3 1.8E+02 0.0039 24.1 5.1 52 24-79 7-58 (210)
143 PF06040 Adeno_E3: Adenovirus 24.8 58 0.0013 24.3 2.0 14 180-193 90-103 (127)
144 PF03789 ELK: ELK domain ; In 24.5 98 0.0021 16.2 2.3 16 56-71 6-21 (22)
145 PF15080 DUF4547: Domain of un 24.4 1.7E+02 0.0037 23.4 4.6 77 110-196 39-129 (196)
146 PF14937 DUF4500: Domain of un 24.1 99 0.0022 21.8 2.9 23 167-189 23-48 (86)
147 PF10183 ESSS: ESSS subunit of 24.0 1.1E+02 0.0023 22.3 3.3 18 181-198 62-80 (105)
148 PF09604 Potass_KdpF: F subuni 23.8 1.3E+02 0.0029 16.1 3.0 16 181-196 2-17 (25)
149 PRK15326 type III secretion sy 23.7 2.6E+02 0.0056 19.5 5.0 42 21-68 14-55 (80)
150 PF06013 WXG100: Proteins of 1 23.7 2.1E+02 0.0046 18.4 9.3 31 18-48 7-37 (86)
151 PRK14748 kdpF potassium-transp 23.7 1.5E+02 0.0032 16.6 3.3 17 180-196 5-21 (29)
152 PF12495 Vip3A_N: Vegetative i 23.7 2.8E+02 0.0061 21.1 5.5 54 116-169 51-115 (177)
153 PF12409 P5-ATPase: P5-type AT 23.7 81 0.0018 23.2 2.6 19 181-199 21-39 (119)
154 PF08135 EPV_E5: Major transfo 23.7 93 0.002 18.9 2.3 9 189-197 24-32 (44)
155 COG4192 Signal transduction hi 23.5 3.6E+02 0.0077 25.5 7.1 61 114-174 253-327 (673)
156 PF12277 DUF3618: Protein of u 23.4 1.9E+02 0.0041 17.8 4.7 27 19-45 4-30 (49)
157 PHA02902 putative IMV membrane 23.2 1.2E+02 0.0027 20.3 3.1 14 184-197 12-25 (70)
158 PF12352 V-SNARE_C: Snare regi 23.2 2.1E+02 0.0046 18.3 6.1 19 111-129 30-48 (66)
159 PLN02943 aminoacyl-tRNA ligase 23.1 3.4E+02 0.0075 27.5 7.6 25 55-79 924-948 (958)
160 PF06898 YqfD: Putative stage 22.8 88 0.0019 28.0 3.2 15 172-186 81-95 (385)
161 PF08114 PMP1_2: ATPase proteo 22.8 1.2E+02 0.0026 18.4 2.7 15 182-196 16-30 (43)
162 PF12729 4HB_MCP_1: Four helix 22.7 3.1E+02 0.0068 20.0 7.8 54 18-74 75-128 (181)
163 PF10256 Erf4: Golgin subfamil 22.5 2.4E+02 0.0052 20.4 5.0 13 166-178 37-49 (118)
164 PF07328 VirD1: T-DNA border e 22.5 3.6E+02 0.0079 20.7 8.8 62 14-79 66-127 (147)
165 smart00549 TAFH TAF homology. 22.5 3E+02 0.0065 19.7 5.8 70 2-74 10-79 (92)
166 PRK11281 hypothetical protein; 22.3 9E+02 0.02 25.2 13.5 27 56-82 74-100 (1113)
167 KOG0811 SNARE protein PEP12/VA 22.2 5.1E+02 0.011 22.2 19.2 50 131-180 194-244 (269)
168 PF14991 MLANA: Protein melan- 22.1 30 0.00064 25.8 0.0 17 181-197 31-47 (118)
169 PF12459 DUF3687: D-Ala-teicho 22.1 1.7E+02 0.0036 17.9 3.3 15 184-198 14-28 (42)
170 PF01299 Lamp: Lysosome-associ 21.8 80 0.0017 27.2 2.6 15 180-194 275-289 (306)
171 PF15168 TRIQK: Triple QxxK/R 21.6 1.4E+02 0.003 20.6 3.2 12 142-153 27-38 (79)
172 COG1033 Predicted exporters of 21.5 1.3E+02 0.0028 29.6 4.2 44 156-199 175-218 (727)
173 PF15431 TMEM190: Transmembran 21.3 1.3E+02 0.0028 22.4 3.2 13 188-200 73-85 (134)
174 KOG2911 Uncharacterized conser 21.3 6.5E+02 0.014 23.2 12.6 49 123-171 312-360 (439)
175 PF05644 Miff: Mitochondrial a 21.1 1.2E+02 0.0026 25.7 3.4 45 144-199 201-245 (246)
176 PF02936 COX4: Cytochrome c ox 21.1 1.3E+02 0.0028 23.2 3.4 15 179-193 75-89 (142)
177 COG4459 NapE Periplasmic nitra 21.1 1.6E+02 0.0034 19.3 3.2 19 176-194 17-35 (62)
178 TIGR01834 PHA_synth_III_E poly 21.0 5.2E+02 0.011 22.8 7.5 43 37-80 272-314 (320)
179 PF13179 DUF4006: Family of un 20.9 1.4E+02 0.003 20.1 3.0 15 183-197 19-33 (66)
180 cd00922 Cyt_c_Oxidase_IV Cytoc 20.9 1.3E+02 0.0027 23.1 3.3 15 179-193 75-89 (136)
181 PF07889 DUF1664: Protein of u 20.8 3.8E+02 0.0082 20.3 6.6 15 31-45 77-91 (126)
182 PF08374 Protocadherin: Protoc 20.8 53 0.0011 27.3 1.2 16 181-196 43-58 (221)
183 COG5415 Predicted integral mem 20.8 2.4E+02 0.0053 23.5 5.0 6 130-135 24-29 (251)
184 PF11146 DUF2905: Protein of u 20.8 1.5E+02 0.0033 19.7 3.2 22 179-200 3-24 (64)
185 PF10661 EssA: WXG100 protein 20.8 1.3E+02 0.0027 23.3 3.3 7 84-90 70-76 (145)
186 TIGR02876 spore_yqfD sporulati 20.8 1E+02 0.0022 27.6 3.2 14 173-186 79-92 (382)
187 cd07670 BAR_SNX18 The Bin/Amph 20.5 2.7E+02 0.0058 23.0 5.2 52 24-79 7-58 (207)
188 PF03670 UPF0184: Uncharacteri 20.5 3.1E+02 0.0068 19.2 6.7 44 24-75 28-71 (83)
189 COG4575 ElaB Uncharacterized c 20.4 3.6E+02 0.0077 19.8 7.7 23 27-49 10-32 (104)
190 PF08537 NBP1: Fungal Nap bind 20.1 2.4E+02 0.0053 24.8 5.2 37 55-91 182-218 (323)
No 1
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-43 Score=280.70 Aligned_cols=196 Identities=47% Similarity=0.640 Sum_probs=170.8
Q ss_pred Cchhhhhhhc---------cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--chhhHHHHHHHHHHHHHHHH
Q 029054 1 MHSYRKLVSS---------KGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGG--SEMVSHTLTRHQEILQDLTQ 69 (200)
Q Consensus 1 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~--~~~~~~~l~r~r~~L~~~~~ 69 (200)
|++|++++++ .+-...+...++++.+||.+|+++.+++|+|..+. ..| .++.+|+++|||++|++|.+
T Consensus 25 L~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~-~s~a~~aa~~htL~RHrEILqdy~q 103 (231)
T KOG3208|consen 25 LVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCA-SSPANSAAVMHTLQRHREILQDYTQ 103 (231)
T ss_pred HHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5799999777 12233455899999999999999999999999943 334 46677999999999999999
Q ss_pred HHHHHHhhHHhHHHHHHhhccccccccccCcccCCCCCHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 029054 70 EFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGG 149 (200)
Q Consensus 70 e~~rl~~~~~~~~~R~~Ll~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~ 149 (200)
||++++.++.+.++|+.|+++++.+. ..++..++ ....+.+++|+++|++|.+.+|++|++|++|+++|+.||.+|++
T Consensus 104 ef~rir~n~~a~~e~~~Ll~s~~~~~-~~~~~~~~-~~~~e~~lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~ 181 (231)
T KOG3208|consen 104 EFRRIRSNIDAKRERESLLESVRADI-SSYPSASG-FNRGEMYLKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGG 181 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCccCC-CchHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999976322 11222222 23348999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 029054 150 INSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 150 ~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~~ 199 (200)
++.|++++++++|.+|++|.+|++|++||.+|+++||++|++|++||||.
T Consensus 182 i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~~ 231 (231)
T KOG3208|consen 182 INNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWIN 231 (231)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999984
No 2
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-31 Score=213.84 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=151.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch---hhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhccc
Q 029054 15 KVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSE---MVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDF 91 (200)
Q Consensus 15 ~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~---~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~~ 91 (200)
.|+++++.+..+|+..++|++++++||+.+|++.||+ .+..+++.|+..|.+++.|+++....--...+|+++++..
T Consensus 29 ~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~ 108 (220)
T KOG1666|consen 29 LPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEAL 108 (220)
T ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhh
Confidence 3578999999999999999999999999999999974 4456888888888888888888774323345788888764
Q ss_pred cccccccCcccC--CCCCHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHH
Q 029054 92 REFDRTRLDLED--GVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS 169 (200)
Q Consensus 92 ~~~~~~~~d~~~--~~~~~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~ 169 (200)
.. ++...+.++ .+.++++.|-+.+++|..|+|.+.|++++|++|+++|+.||++|.+++.+|++++.++|+|+++++
T Consensus 109 ~a-dd~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 109 EA-DDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILT 187 (220)
T ss_pred hc-cccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 21 110001111 123444566677778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhC
Q 029054 170 SIKRKKSMDTIILALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 170 ~I~rR~~~d~~Il~~vi~~~i~~~~~~~~~K 200 (200)
.|.||..+++|++++||++++++++++.|+|
T Consensus 188 tM~RR~~~nk~~~~aii~~l~~~il~ilY~k 218 (220)
T KOG1666|consen 188 TMTRRLIRNKFTLTAIIALLVLAILLILYSK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988888887776
No 3
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.7e-28 Score=194.64 Aligned_cols=171 Identities=22% Similarity=0.264 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-----------HHhHHHHHH
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSS-----------LKAKQEHAS 86 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~-----------~~~~~~R~~ 86 (200)
.+-..++.+|+..++++...|..|+..+.+.||+.+. -.+.+ ..+++.++..++.. .++.++|++
T Consensus 29 ~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq--~~rlr--~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~ 104 (213)
T KOG3251|consen 29 QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQ--AARLR--VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVE 104 (213)
T ss_pred cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5677899999999999999999999999999976442 22222 33344444333333 345677999
Q ss_pred hhccccccccccCcccCCCCCHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHH
Q 029054 87 LLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ 166 (200)
Q Consensus 87 Ll~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~ 166 (200)
||++.. .. ++.. ...+.|.++++++.+.+||+++|+++.+|++|+++|..||-+|+++++|++++.+++|.||.
T Consensus 105 lL~~~~--~~--~~~~--~~~~~D~el~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ 178 (213)
T KOG3251|consen 105 LLDRRF--TN--GATG--TSIPFDEELQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQ 178 (213)
T ss_pred HhcCCC--CC--CCcc--CCCcchHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 998742 21 1111 12346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhchHHH-HHHHHHHHHHHHHHHH
Q 029054 167 ILSSIKRKKSMDTIIL-ALVASVCTFLIFIYWV 198 (200)
Q Consensus 167 ~l~~I~rR~~~d~~Il-~~vi~~~i~~~~~~~~ 198 (200)
||+.|+||.+.||+|| +|||+||++|+++|+|
T Consensus 179 ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w 211 (213)
T KOG3251|consen 179 TIRLIERRVREDKIIFYGGVILTLVIMYLFYRW 211 (213)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 5888888888877765
No 4
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.66 E-value=3.9e-16 Score=105.62 Aligned_cols=66 Identities=35% Similarity=0.481 Sum_probs=63.9
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhh
Q 029054 110 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK 175 (200)
Q Consensus 110 ~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~ 175 (200)
|+|++|+++|++|++++++++++|.+|+.+|..||++|+++++|+.++++++|.++++|+.|.||+
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 579999999999999999999999999999999999999999999999999999999999999985
No 5
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.12 E-value=9.7e-10 Score=79.09 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=67.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHH
Q 029054 116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVA 186 (200)
Q Consensus 116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi 186 (200)
+++|.++++++.+.++++..+++.|.+|.++|+.+++...++...+..+.++++.|.|+...|++|+++.+
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~ 77 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAF 77 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999987443
No 6
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=98.57 E-value=5.2e-07 Score=62.76 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=46.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 16 VDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 16 ~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
++++++....+|+..|+++.+++++|+.|+++.|++ ....|...+.+|+.++.+++..+
T Consensus 19 ~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s----~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 19 SGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPS----ERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999864 24556666666666666666544
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0051 Score=52.52 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 029054 131 SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWV 198 (200)
Q Consensus 131 ~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~ 198 (200)
++=.+.-.-..+|.|+++++-+-+.+++-.++++.+.|-+-=.|...++|++.=|++++++|+++||+
T Consensus 241 ~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 241 GIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 44445555668999999999999999999999999999999999999999998777777777766654
No 8
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.016 Score=47.60 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhccccccccccCccc--C--CCCCHHHHHHHHhHHHHhHHHHHHHHH
Q 029054 55 HTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLE--D--GVGSPEQALLKEHASINRSTGQMDSVI 130 (200)
Q Consensus 55 ~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~~~~~~~~~~d~~--~--~~~~~~~~ll~e~~~L~~S~~~~d~~l 130 (200)
....-|...|++|+.++++++..++....+.-..+.... - ..+.. + ...+++++|++.+++|++|.+.+.+-.
T Consensus 65 ~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde-~--~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~ 141 (220)
T KOG1666|consen 65 NFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDE-L--LEALEADDQNISADQRARLLQNTERLERSTDRLKDSQ 141 (220)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHH-H--HhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHH
Confidence 457789999999999999999998776533333332100 0 01111 1 124667899999999999999999999
Q ss_pred HHHHHHHHHHHHh-HHHhhhHHHHHHHhhccCChHHHHHHH
Q 029054 131 SQAQATLGALVFQ-RSTFGGINSKLSNVSSRLPSVNQILSS 170 (200)
Q Consensus 131 ~~g~~~l~~L~~Q-r~~l~~~~~rl~~~~~~l~~s~~~l~~ 170 (200)
-+|.+| +.++.+ =+-|.+-+..|...-.+|..++.-+.+
T Consensus 142 Ria~ET-EqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgk 181 (220)
T KOG1666|consen 142 RIALET-EQIGSEILEDLHGQREQLERARERLRETDANLGK 181 (220)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhH
Confidence 999996 344443 355777788888888888887776654
No 9
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.07 Score=44.70 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhccccccccccC
Q 029054 25 SGIDWLLKQLQQVNIQMQDWVSSGGS-----EMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRL 99 (200)
Q Consensus 25 ~~Ie~~l~e~~~~~~~m~~~v~~~~~-----~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~~~~~~~~~~ 99 (200)
+.|+..++.+++.+.=+..-..+... +.+...+.+.+..+++.+-.|... .+.....|..|++.-.. ++ .
T Consensus 49 ~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~~--~~~~~~~r~~l~~~~~~--~~-~ 123 (235)
T KOG3202|consen 49 RSIEEDLEDLDELISILERNPSKFGIDEFELSRRRRFIDNLRTQLRQMKSKMAMS--GFANSNIRDILLGPEKS--PN-L 123 (235)
T ss_pred HHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhhhcCCCCC--Cc-h
Confidence 36777777776666655544333321 223344444444554444444331 11111236666654110 00 0
Q ss_pred ccc----CCCC------CHHHHHHHHhH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHH
Q 029054 100 DLE----DGVG------SPEQALLKEHA-SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 168 (200)
Q Consensus 100 d~~----~~~~------~~~~~ll~e~~-~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l 168 (200)
+.. .+.. .....+++|++ .|+.=+..+-.+-++|..+-++|..|...|..-..=|-.+.+.|....+-+
T Consensus 124 ~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l 203 (235)
T KOG3202|consen 124 DEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRL 203 (235)
T ss_pred hhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0101 11245666665 777777777888899999999999999999999888888999999999999
Q ss_pred HHHHHhhhhch
Q 029054 169 SSIKRKKSMDT 179 (200)
Q Consensus 169 ~~I~rR~~~d~ 179 (200)
..+.+......
T Consensus 204 ~~v~~~~s~~~ 214 (235)
T KOG3202|consen 204 AKVNRMASQCS 214 (235)
T ss_pred HHHHHHhcccc
Confidence 99998444333
No 10
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.016 Score=43.25 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=59.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhh---ccCChH-HHHHHHHHHhhhhchHHHHHHHHHHHH
Q 029054 116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVS---SRLPSV-NQILSSIKRKKSMDTIILALVASVCTF 191 (200)
Q Consensus 116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~---~~l~~s-~~~l~~I~rR~~~d~~Il~~vi~~~i~ 191 (200)
++++++....+||+.++=..=.+..-+--+.|....+|-.... +.|-.. .++=+++-.+..+-++|++.|++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999998877777777777777777666654444 344333 344555666677888888888777777
Q ss_pred HHHHHHHh
Q 029054 192 LIFIYWVT 199 (200)
Q Consensus 192 ~~~~~~~~ 199 (200)
++++|+|.
T Consensus 108 iiii~~~~ 115 (116)
T KOG0860|consen 108 VIIIYIFL 115 (116)
T ss_pred HHHHHHhc
Confidence 77777764
No 11
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.86 E-value=0.23 Score=41.84 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=59.0
Q ss_pred HHHHHHhHHHHhHHHHHHHHH-------HHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHH
Q 029054 110 QALLKEHASINRSTGQMDSVI-------SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 182 (200)
Q Consensus 110 ~~ll~e~~~L~~S~~~~d~~l-------~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il 182 (200)
+..++.+..++.. ..++++ +.+...-..|.....+|..+...+..-...++..+.=|+.+.++... .|.+
T Consensus 155 e~~l~~~~~~QE~--L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~~ 231 (251)
T PF09753_consen 155 EKILQHHRNLQED--LTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWTW 231 (251)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHH
Confidence 5556556655543 344444 45556667788888888888888888777888888777777655444 5555
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 029054 183 ALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 183 ~~vi~~~i~~~~~~~~~K 200 (200)
.+++++|++||++|+|-|
T Consensus 232 ~~i~~v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 232 LMIFVVIIVFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHHHHHHHHHhe
Confidence 566666777777776654
No 12
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.77 E-value=0.024 Score=40.07 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=45.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchH
Q 029054 116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180 (200)
Q Consensus 116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~ 180 (200)
.+.+..-...++++-++-.+-.+.+-+..+.|.....|-.++...-..-.+.-+.+.++..-..+
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~ 66 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNY 66 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888888888888888888888888777766666555555555555555554443
No 13
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.029 Score=41.75 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=51.7
Q ss_pred HHHHHHhHHHHhH-HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHH
Q 029054 110 QALLKEHASINRS-TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASV 188 (200)
Q Consensus 110 ~~ll~e~~~L~~S-~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~ 188 (200)
+.+-+|+++.-.+ ...+--+-.....|..+...|+..|.+..+-+..+..-|++.=.=++.+.|+ -.-++..|.++++
T Consensus 28 ~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~ 106 (118)
T KOG3385|consen 28 ASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFS 106 (118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHH
Confidence 3444666644433 3445555567778888889999999999887766655554444444444444 2234445555555
Q ss_pred HHHHHHHHHH
Q 029054 189 CTFLIFIYWV 198 (200)
Q Consensus 189 ~i~~~~~~~~ 198 (200)
++.|+++|||
T Consensus 107 lV~~fi~~~~ 116 (118)
T KOG3385|consen 107 LVAFFILWVW 116 (118)
T ss_pred HHHHHHhhee
Confidence 5555544444
No 14
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=94.76 E-value=0.11 Score=35.17 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.4
Q ss_pred HhhhHHHHHHHhhccCChHH-HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 029054 146 TFGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 146 ~l~~~~~rl~~~~~~l~~s~-~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~~ 199 (200)
-+..+.+||..+...+...+ .+.+++.++.-||-=|++|+++.+++++++..++
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~ 67 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLS 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888887777 5778899999999999987766666665555443
No 15
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=6.3 Score=34.09 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHH-HHHHHHHHHHHHHHH
Q 029054 140 LVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTII-LALVASVCTFLIFIY 196 (200)
Q Consensus 140 L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~I-l~~vi~~~i~~~~~~ 196 (200)
..+|.-++.++-=-+.++.-++....+=+.++++-.++++-. +++|.++|+|++++.
T Consensus 241 VvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~llvl 298 (305)
T KOG0809|consen 241 VVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIALLVL 298 (305)
T ss_pred HHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHHHHH
Confidence 467888888888888888888888999999999998888643 344444555444443
No 16
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=92.52 E-value=0.49 Score=32.01 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=34.4
Q ss_pred hhhHHHHHHHhhccCChHH-HHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 029054 147 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLI 193 (200)
Q Consensus 147 l~~~~~rl~~~~~~l~~s~-~~l~~I~rR~~~d~~Il~~vi~~~i~~~ 193 (200)
++.+.+||..+...+...| .+-+++.++.-||-=|++|++..+++++
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~ 61 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHH
Confidence 5567778888888777777 5778899999999988875544444443
No 17
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=92.30 E-value=0.46 Score=32.16 Aligned_cols=47 Identities=28% Similarity=0.426 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhhccCChHH-HHHHHHHHhhhhchHHHH-HHHHHHHHHH
Q 029054 147 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILA-LVASVCTFLI 193 (200)
Q Consensus 147 l~~~~~rl~~~~~~l~~s~-~~l~~I~rR~~~d~~Il~-~vi~~~i~~~ 193 (200)
+..++.||.++...+...| .+-++|..+.-||--|++ .||++.++++
T Consensus 17 fne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i 65 (75)
T COG4064 17 FNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMI 65 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3455666666666666665 567889999999998885 5555544444
No 18
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=92.16 E-value=0.55 Score=32.45 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=34.0
Q ss_pred hhhHHHHHHHhhccCChHH-HHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 029054 147 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLI 193 (200)
Q Consensus 147 l~~~~~rl~~~~~~l~~s~-~~l~~I~rR~~~d~~Il~~vi~~~i~~~ 193 (200)
++.+++||.++...+...| .+-+++..+.-||-=|++|++..+++++
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~ 64 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHH
Confidence 5667778888888777777 5778889999999988875544444433
No 19
>PRK09546 zntB zinc transporter; Reviewed
Probab=91.41 E-value=8.9 Score=33.26 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhHH
Q 029054 63 ILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 63 ~L~~~~~e~~rl~~~~~ 79 (200)
.+..++++.-+++..+.
T Consensus 183 ~l~~lrr~l~~lrr~l~ 199 (324)
T PRK09546 183 ELALLRKQLIVMRRYMA 199 (324)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666666665553
No 20
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.45 E-value=9.8 Score=32.08 Aligned_cols=150 Identities=16% Similarity=0.232 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCchhhHHHHHHHHHHHHHHH-HHHHHHHhhHHh-HHHHHHhhcccc
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVS---SGGSEMVSHTLTRHQEILQDLT-QEFYRLRSSLKA-KQEHASLLEDFR 92 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~---~~~~~~~~~~l~r~r~~L~~~~-~e~~rl~~~~~~-~~~R~~Ll~~~~ 92 (200)
.....+...|+.....+.++++++..+-. ..|+..+...++.-+..|.+.+ ++|...+..... ..+=..||..+.
T Consensus 87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 87 QRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888889999999987665 3344455445555555666663 234444443322 223345666553
Q ss_pred c-cccccCcccCCCCC-HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHH
Q 029054 93 E-FDRTRLDLEDGVGS-PEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 168 (200)
Q Consensus 93 ~-~~~~~~d~~~~~~~-~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l 168 (200)
. |..+. ....+... -.+.|-+....|......+++..+...++-.-...-+..|.....+...+.+.-..++.+|
T Consensus 167 ~~~~~~~-~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 167 KWFQKPQ-QENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHhhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11111 11101001 1134445555566555555555555555544445555555555555554444433333333
No 21
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=90.17 E-value=2.2 Score=27.33 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=48.1
Q ss_pred HHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHH
Q 029054 112 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 168 (200)
Q Consensus 112 ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l 168 (200)
+..-...|.+.+..+-++.+++..+-..+..|++.|.++...+..+...+.....-+
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l 63 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRL 63 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344556889999999999999999999999999999999999988888776665444
No 22
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=89.89 E-value=8.2 Score=32.15 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHH
Q 029054 24 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFY 72 (200)
Q Consensus 24 ~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~ 72 (200)
.......++++.+-+++++..+.+.+.......+...+..+..+++-+.
T Consensus 120 ~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~ 168 (292)
T PF01544_consen 120 VDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLS 168 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 3444455555566666666666444433222334444444444443333
No 23
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=89.56 E-value=11 Score=31.39 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=55.1
Q ss_pred HHHHHHHhHHHHh----HHHHHHH-HHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHH
Q 029054 109 EQALLKEHASINR----STGQMDS-VISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 183 (200)
Q Consensus 109 ~~~ll~e~~~L~~----S~~~~d~-~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~ 183 (200)
.|+.+..++.++. |-..+-. +-..+.+.-+.|..-++++..+..-+..-...|+-.+.=+.+=...+.-+++-++
T Consensus 142 ~dq~l~~q~~lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~ 221 (244)
T KOG2678|consen 142 VDQQLEDQDTLQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYIT 221 (244)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHH
Confidence 4566655554443 3222222 2244555566777888888888766666556666666666666555666677777
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 184 LVASVCTFLIFIYWV 198 (200)
Q Consensus 184 ~vi~~~i~~~~~~~~ 198 (200)
.+|++|+.|++.+++
T Consensus 222 miI~v~~sFVsMili 236 (244)
T KOG2678|consen 222 MIIFVILSFVSMILI 236 (244)
T ss_pred HHHHHHHHHHHHHHH
Confidence 778788877755543
No 24
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=1.6 Score=37.41 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=46.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHH
Q 029054 118 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 172 (200)
Q Consensus 118 ~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~ 172 (200)
+-.++..++.+....|..|+..|..|++.|.++...+-.+...+-.+.+.|..++
T Consensus 80 St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 80 STRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 5556667788888999999999999999999999999998888888777776554
No 25
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=87.06 E-value=5.4 Score=25.68 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=49.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhh
Q 029054 117 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK 175 (200)
Q Consensus 117 ~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~ 175 (200)
+.|..=+..+.++-+++..+-..+..|.+.|.++...+..+...+...+.=|....++.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666667778888999999999999999999999999999999988887777766554
No 26
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.24 E-value=22 Score=30.95 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=33.8
Q ss_pred HHHhHHHHHHHHH-HHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHH-HHHHh
Q 029054 118 SINRSTGQMDSVI-SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS-SIKRK 174 (200)
Q Consensus 118 ~L~~S~~~~d~~l-~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~-~I~rR 174 (200)
.|+.|.+.+.++. +++.- -..|.+++..+-.-+..+...+.....=++ .+...
T Consensus 210 ~LEksi~ELhqlFlDMa~L----Ve~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~q 264 (297)
T KOG0810|consen 210 KLEKSIRELHQLFLDMAVL----VESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQ 264 (297)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444442 34333 367999999999999999988888554444 44433
No 27
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.66 E-value=8.5 Score=33.58 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=53.4
Q ss_pred HHHHHHhHHHHhHHHH-HHHHHHH----------HHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhc
Q 029054 110 QALLKEHASINRSTGQ-MDSVISQ----------AQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD 178 (200)
Q Consensus 110 ~~ll~e~~~L~~S~~~-~d~~l~~----------g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d 178 (200)
+.+-.|+.+|.+--.- +|++..+ =--.-+-+-.|-..|..+.+=..++..++..+|.=|+++.+...+.
T Consensus 214 Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~ 293 (316)
T KOG3894|consen 214 QLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGL 293 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccc
Confidence 3455788888776653 3333322 1222345667888899999988899999999999999998887666
Q ss_pred h-HHHHHHH
Q 029054 179 T-IILALVA 186 (200)
Q Consensus 179 ~-~Il~~vi 186 (200)
+ |++++++
T Consensus 294 r~~~lf~ll 302 (316)
T KOG3894|consen 294 RVFLLFFLL 302 (316)
T ss_pred hhHHHHHHH
Confidence 5 5655443
No 28
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=84.17 E-value=10 Score=25.48 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 029054 166 QILSSIKRKKSMDTIILALVASVCTFLIFIYWV 198 (200)
Q Consensus 166 ~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~ 198 (200)
++-..|+.=..-.+|+++.+++.++.+++.+++
T Consensus 38 ~~~~~l~~I~~n~kW~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 38 NLNKQLEKIKSNTKWIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455688888888777777665554
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.76 E-value=19 Score=29.53 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHH
Q 029054 164 VNQILSSIKRKKSMDTIILALVASV 188 (200)
Q Consensus 164 s~~~l~~I~rR~~~d~~Il~~vi~~ 188 (200)
...-+....+....+.|+.||.+++
T Consensus 158 l~~~~~~~~~~~~~~wf~~Gg~v~~ 182 (206)
T PRK10884 158 ANLQLDDKQRTIIMQWFMYGGGVAG 182 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHchHHHH
Confidence 3444455566667777777644444
No 30
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=83.58 E-value=12 Score=25.93 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 029054 127 DSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196 (200)
Q Consensus 127 d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~ 196 (200)
|.+++.|. -+++|..+=+.|...-..+.. .+..+=+.+-.+..+=.+|+++++++++++++++
T Consensus 24 ~~ll~Rge-~L~~L~~kt~~L~~~a~~F~k------~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~ 86 (89)
T PF00957_consen 24 DKLLERGE-KLEELEDKTEELSDNAKQFKK------NAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIV 86 (89)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCc-hHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHH
Confidence 44444443 355555555555554444442 3445556777888888888887765555555544
No 31
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=83.26 E-value=17 Score=31.28 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHH-HhhhhchHHHHHHHHHHHHHHHHHH
Q 029054 122 STGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK-RKKSMDTIILALVASVCTFLIFIYW 197 (200)
Q Consensus 122 S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~-rR~~~d~~Il~~vi~~~i~~~~~~~ 197 (200)
=++.+.|+-++=...-.-..+|.+...++---+.++..++-..++=|.+.. -++++.++-+++++.+||+.+++..
T Consensus 200 l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~l 276 (283)
T COG5325 200 LARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVSL 276 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHHH
Confidence 333333333333333333467888888888888888877777666555554 4466667777666666665555443
No 32
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=81.83 E-value=4.8 Score=26.46 Aligned_cols=25 Identities=4% Similarity=-0.081 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHH
Q 029054 167 ILSSIKRKKSMDTIILALVASVCTF 191 (200)
Q Consensus 167 ~l~~I~rR~~~d~~Il~~vi~~~i~ 191 (200)
...+-.+|.++-++|+.++++++++
T Consensus 27 ~~~k~qk~~~~~~~i~~~~~i~~l~ 51 (59)
T PF09889_consen 27 EYRKRQKRMRKTQYIFFGIFILFLA 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777655544333
No 33
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=81.02 E-value=2.6 Score=26.66 Aligned_cols=28 Identities=4% Similarity=0.024 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 029054 166 QILSSIKRKKSMDTIILALVASVCTFLI 193 (200)
Q Consensus 166 ~~l~~I~rR~~~d~~Il~~vi~~~i~~~ 193 (200)
+..+.+-+|-++|++-+.|++.++++++
T Consensus 3 s~~~~~~~~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred CHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3456788899999987755544444333
No 34
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=80.94 E-value=35 Score=29.22 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 30 LLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 30 ~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
.++++++-+++++..+...+.... -..+..++++.-+++..+
T Consensus 150 ~l~~l~~~~~~le~~l~~~~~~~~-------l~~l~~l~~~l~~l~~~l 191 (318)
T TIGR00383 150 LLENIEDELEELEDEIISGPTSTL-------MDEILSLRTELLALRRSL 191 (318)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHH-------HHHHHHHHHHHHHHHHHH
Confidence 334444444555554544333222 223444555555555443
No 35
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=80.90 E-value=13 Score=31.38 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCC----hHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 029054 123 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLP----SVNQILSSIKRKKSMDTIILALVASVCTFLIFI 195 (200)
Q Consensus 123 ~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~----~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~ 195 (200)
.+++.|+-+.=..+-+....|-+...-+.+-+-+.-...+ -..+-++. .|..++++|+.+|+.++.++++++
T Consensus 191 Ekt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~viv~ 266 (280)
T COG5074 191 EKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIVIVV 266 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHHHHH
Confidence 3444444444444445556788887777777766555444 34455666 566777888876544333333333
No 36
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=79.74 E-value=0.79 Score=27.76 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 029054 184 LVASVCTFLIFIYWVT 199 (200)
Q Consensus 184 ~vi~~~i~~~~~~~~~ 199 (200)
++|++++++++++||+
T Consensus 22 ~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYR 37 (40)
T ss_pred HHHHHHHHHHhheEEe
Confidence 4555555555555553
No 37
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=78.84 E-value=38 Score=28.47 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029054 56 TLTRHQEILQDLTQEFYR 73 (200)
Q Consensus 56 ~l~r~r~~L~~~~~e~~r 73 (200)
.+..|...|.+++.-.+.
T Consensus 186 ~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 38
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=77.31 E-value=42 Score=28.07 Aligned_cols=56 Identities=4% Similarity=0.005 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 029054 129 VISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW 197 (200)
Q Consensus 129 ~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~ 197 (200)
+.+....+..++..+|+-++++-..+.. .++.-..+.++++.|+++++++|++|..
T Consensus 111 tde~k~~~~~ei~k~r~e~~~ml~evK~-------------~~E~y~k~~k~~~~gi~aml~Vf~LF~l 166 (230)
T PF03904_consen 111 TDELKNIAQNEIKKVREENKSMLQEVKQ-------------SHEKYQKRQKSMYKGIGAMLFVFMLFAL 166 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3355556777888888888877666554 6677777788887777766666665543
No 39
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=73.21 E-value=4.7 Score=23.32 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 029054 185 VASVCTFLIFIYWV 198 (200)
Q Consensus 185 vi~~~i~~~~~~~~ 198 (200)
||+++.++|+++||
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 34444444544444
No 40
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=71.02 E-value=31 Score=24.43 Aligned_cols=59 Identities=7% Similarity=0.106 Sum_probs=39.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--chhh---HHHHHHHHHHHHHHHHHHHHH
Q 029054 16 VDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGG--SEMV---SHTLTRHQEILQDLTQEFYRL 74 (200)
Q Consensus 16 ~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~--~~~~---~~~l~r~r~~L~~~~~e~~rl 74 (200)
...+...+..++...|+.+...++.|+..|.-.- |.+. ...+.++|..+.+.+.+.+.+
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4456777788888888888888888887664421 2221 136777777777777666655
No 41
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=70.68 E-value=19 Score=22.33 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=40.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHH
Q 029054 117 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQI 167 (200)
Q Consensus 117 ~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~ 167 (200)
..|..-...+-++-+++..+-..+..|.+.|..+...+..+...+....+=
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777888899999999999999999998888877776555443
No 42
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=69.99 E-value=29 Score=22.90 Aligned_cols=56 Identities=20% Similarity=0.426 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 20 ENDLESGIDWLLKQLQQVNIQMQ--DWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 20 ~~~~~~~Ie~~l~e~~~~~~~m~--~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
...+..+++..-.++..+...|+ .++.+.|+ ..+..-++.|.+|..++.++...+.
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~----eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLSNENFVEKAPE----EVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-C----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccCCH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443 33444444 3678888899999988888877653
No 43
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=69.37 E-value=33 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029054 20 ENDLESGIDWLLKQLQQVNIQMQDWVSS 47 (200)
Q Consensus 20 ~~~~~~~Ie~~l~e~~~~~~~m~~~v~~ 47 (200)
...+...++....++++-+++|+.++..
T Consensus 111 f~rL~~~Vd~~~~eL~~eI~~L~~~i~~ 138 (171)
T PF04799_consen 111 FARLCQQVDQTKNELEDEIKQLEKEIQR 138 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 44
>PF12669 P12: Virus attachment protein p12 family
Probab=68.57 E-value=3.7 Score=26.82 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIF 194 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~ 194 (200)
||++++|++.+++++
T Consensus 2 iII~~Ii~~~~~~v~ 16 (58)
T PF12669_consen 2 IIIGIIILAAVAYVA 16 (58)
T ss_pred eeHHHHHHHHHHHHH
Confidence 455555545555443
No 45
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=68.46 E-value=13 Score=25.16 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 029054 19 AENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYR 73 (200)
Q Consensus 19 ~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~r 73 (200)
.-.....+++..|++++--+..+.. .....+..++..|+..|..++++|++
T Consensus 29 ~~e~~l~ea~~~l~qMe~E~~~~p~----s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 29 EIERDLDEAEELLKQMELEVRSLPP----SERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTS-H----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555666666666665555532 33355667888888888888888764
No 46
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=67.33 E-value=1.8 Score=28.94 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=0.4
Q ss_pred HHHHHHHHHHh
Q 029054 189 CTFLIFIYWVT 199 (200)
Q Consensus 189 ~i~~~~~~~~~ 199 (200)
+++++++|.++
T Consensus 27 lLIlf~iyR~r 37 (64)
T PF01034_consen 27 LLILFLIYRMR 37 (64)
T ss_dssp ----------S
T ss_pred HHHHHHHHHHH
Confidence 34444455443
No 47
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.10 E-value=69 Score=26.56 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHH
Q 029054 117 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 182 (200)
Q Consensus 117 ~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il 182 (200)
..+..-+..+-++-.+....++++-.-.+.|.. +.++.+.+....+....=..+..++.++.
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~----l~~~~s~l~~~s~~y~~~a~~in~~sl~~ 195 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNA----LSSMASELSSESRKYPKTAKGINRKSLIR 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHh----hhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence 334444445555556666677777666555543 55666677766666665566666666553
No 48
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=66.91 E-value=6.8 Score=33.12 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 029054 54 SHTLTRHQEILQDLTQEFYRLRSSLKA 80 (200)
Q Consensus 54 ~~~l~r~r~~L~~~~~e~~rl~~~~~~ 80 (200)
..+..|||.+..++..|.++.+..+..
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~ 111 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISS 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999998888777766543
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.87 E-value=1e+02 Score=26.92 Aligned_cols=33 Identities=3% Similarity=-0.088 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 029054 19 AENDLESGIDWLLKQLQQVNIQMQDWVSSGGSE 51 (200)
Q Consensus 19 ~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~ 51 (200)
--.-.++++..-+.+-..++.+++.++.+.+|+
T Consensus 72 ly~~~c~EL~~~I~egr~~~~~~E~~~~~~nPp 104 (325)
T PF08317_consen 72 LYQFSCRELKKYISEGRQIFEEIEEETYESNPP 104 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 445678899999999999999999999888775
No 50
>PRK09759 small toxic polypeptide; Provisional
Probab=63.15 E-value=7.6 Score=24.66 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 029054 178 DTIILALVASVCTFLIFIYWV 198 (200)
Q Consensus 178 d~~Il~~vi~~~i~~~~~~~~ 198 (200)
+|.++++++.+|+-++++.|.
T Consensus 3 ~k~~l~~liivCiTvL~f~~l 23 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTWM 23 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHHH
Confidence 455566667777777766665
No 51
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=62.06 E-value=17 Score=22.50 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=16.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHHHHH
Q 029054 173 RKKSMDTIILALVASVCTFLIFIYW 197 (200)
Q Consensus 173 rR~~~d~~Il~~vi~~~i~~~~~~~ 197 (200)
++.-++-++=.+.|.+|++++.++.
T Consensus 25 r~~lq~lfvnf~lilicllli~iiv 49 (52)
T TIGR01294 25 RQNLQNLFINFCLILICLLLICIIV 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677777887775543
No 52
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=61.51 E-value=50 Score=27.59 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=26.0
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHH----HHHHhHHHhhhHHHHHHHhhc
Q 029054 110 QALLKEHASINRSTGQMDSVISQAQATLG----ALVFQRSTFGGINSKLSNVSS 159 (200)
Q Consensus 110 ~~ll~e~~~L~~S~~~~d~~l~~g~~~l~----~L~~Qr~~l~~~~~rl~~~~~ 159 (200)
+.|+.-...|..+...+.+++..=..+++ .+...-..++....||....+
T Consensus 170 ~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~ 223 (251)
T PF09753_consen 170 EEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSS 223 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555533333333 233334556666777766654
No 53
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=60.76 E-value=13 Score=26.25 Aligned_cols=8 Identities=63% Similarity=0.771 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 029054 167 ILSSIKRK 174 (200)
Q Consensus 167 ~l~~I~rR 174 (200)
++++..||
T Consensus 4 i~kK~K~k 11 (96)
T PF13800_consen 4 ILKKAKRK 11 (96)
T ss_pred HHHHHHHH
Confidence 34444433
No 54
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=59.04 E-value=22 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=14.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHH
Q 029054 174 KKSMDTIILALVASVCTFLIFIYW 197 (200)
Q Consensus 174 R~~~d~~Il~~vi~~~i~~~~~~~ 197 (200)
+..++-++=.+.|.+|++++.++.
T Consensus 26 qnlqelfvnfclilicllli~iiv 49 (52)
T PF04272_consen 26 QNLQELFVNFCLILICLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555565677777877775543
No 55
>PF13997 YqjK: YqjK-like protein
Probab=58.88 E-value=42 Score=22.80 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 029054 137 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCT 190 (200)
Q Consensus 137 l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i 190 (200)
+.....||.-|........++...++..-..+..+. +.-++.+++++++.
T Consensus 2 l~qi~qQR~~La~~~~~w~~~ta~~Dr~w~~l~~lr----~~~~l~~g~~a~~~ 51 (73)
T PF13997_consen 2 LRQIQQQRLDLAANAEPWLEATAPYDRGWQTLRSLR----RHPILGSGVLALYG 51 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHH----HhHHHHHHHHHHHH
Confidence 356789999999999999999999999998887443 33344456665544
No 56
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=57.58 E-value=15 Score=29.21 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=21.3
Q ss_pred HhhhhchHHHHHHHHHHHHHHHHHHHh
Q 029054 173 RKKSMDTIILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 173 rR~~~d~~Il~~vi~~~i~~~~~~~~~ 199 (200)
|-.+|.++|-+.||++.+.+++|++..
T Consensus 146 R~Q~RHR~IG~~VlA~~VA~L~~~F~R 172 (215)
T PF05084_consen 146 RTQKRHRLIGAVVLAVSVAMLTWFFLR 172 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788999889998888888777653
No 57
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=56.26 E-value=1.5e+02 Score=26.53 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=38.0
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 029054 108 PEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGG 149 (200)
Q Consensus 108 ~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~ 149 (200)
....|..|-..|..+...+..-+..+...+..|...+..|..
T Consensus 318 ~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~ 359 (384)
T PF03148_consen 318 PQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEE 359 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335788999999999999999999999999999999988875
No 58
>COG4640 Predicted membrane protein [Function unknown]
Probab=55.56 E-value=9.1 Score=34.58 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 029054 180 IILALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~~K 200 (200)
+.|++++++|||++++|+|.|
T Consensus 53 i~was~a~~lIlii~~~~fgk 73 (465)
T COG4640 53 IPWASGAFILILIIILFFFGK 73 (465)
T ss_pred ehhHHHHHHHHHHHHHHHHhh
Confidence 345677778888888888754
No 59
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=54.03 E-value=2.9e+02 Score=29.08 Aligned_cols=34 Identities=9% Similarity=0.191 Sum_probs=20.6
Q ss_pred HHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhc
Q 029054 145 STFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD 178 (200)
Q Consensus 145 ~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d 178 (200)
+....+-..+..+..+++...+.|........++
T Consensus 1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555556666666666666666666665555
No 60
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=53.52 E-value=2.4e+02 Score=27.95 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHHHhhhHHHHHHH
Q 029054 132 QAQATLGALVFQRSTFGGINSKLSN 156 (200)
Q Consensus 132 ~g~~~l~~L~~Qr~~l~~~~~rl~~ 156 (200)
.-..+..+|...+..+...-+.+..
T Consensus 358 ~v~~ik~~l~~~~~~i~~~a~~i~~ 382 (806)
T PF05478_consen 358 VVPPIKRDLDSIGKQIRSQAKQIPN 382 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3334445555555554444444433
No 61
>PHA02844 putative transmembrane protein; Provisional
Probab=53.16 E-value=20 Score=24.58 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIYWV 198 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~ 198 (200)
+|+..++++|++++++.|+
T Consensus 51 ~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 51 WILTIIFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554443
No 62
>PHA02955 hypothetical protein; Provisional
Probab=52.79 E-value=14 Score=30.50 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029054 179 TIILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 179 ~~Il~~vi~~~i~~~~~~~~~ 199 (200)
++|++.|++++++++++|+.+
T Consensus 181 w~ii~~v~ii~~~v~l~yikR 201 (213)
T PHA02955 181 WFIIYIVLCLLILIILGYIYR 201 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 455665665555555555543
No 63
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=52.41 E-value=25 Score=21.76 Aligned_cols=9 Identities=22% Similarity=0.146 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 029054 191 FLIFIYWVT 199 (200)
Q Consensus 191 ~~~~~~~~~ 199 (200)
+.+++|.|+
T Consensus 23 ~gi~~w~~~ 31 (49)
T PF05545_consen 23 IGIVIWAYR 31 (49)
T ss_pred HHHHHHHHc
Confidence 333444444
No 64
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=52.07 E-value=14 Score=26.73 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIYWV 198 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~~ 198 (200)
|+.+++++|++++++|..
T Consensus 64 ili~lls~v~IlVily~I 81 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAI 81 (101)
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 445667777777777764
No 65
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=51.75 E-value=1.6e+02 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 029054 25 SGIDWLLKQLQQVNIQMQDWVSS 47 (200)
Q Consensus 25 ~~Ie~~l~e~~~~~~~m~~~v~~ 47 (200)
.=++...+.....+++++..+..
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ 165 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEA 165 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444445555555544433
No 66
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=51.20 E-value=41 Score=22.04 Aligned_cols=27 Identities=0% Similarity=0.138 Sum_probs=17.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHHHHH
Q 029054 172 KRKKSMDTIILALVASVCTFLIFIYWV 198 (200)
Q Consensus 172 ~rR~~~d~~Il~~vi~~~i~~~~~~~~ 198 (200)
.++.++.+-..+.+.+++++++++|+|
T Consensus 29 ~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 29 RKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555667777777777777765
No 67
>PRK09738 small toxic polypeptide; Provisional
Probab=50.40 E-value=14 Score=23.61 Aligned_cols=21 Identities=19% Similarity=0.361 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 029054 178 DTIILALVASVCTFLIFIYWV 198 (200)
Q Consensus 178 d~~Il~~vi~~~i~~~~~~~~ 198 (200)
++.+++++|.+|+-++++.|.
T Consensus 5 ~~~~~~~livvCiTvL~f~~l 25 (52)
T PRK09738 5 RSPLVWCVLIVCLTLLIFTYL 25 (52)
T ss_pred cceehhhHHHHHHHHHHHHHH
Confidence 334445556677777766554
No 68
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=50.13 E-value=1.3e+02 Score=23.81 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=29.3
Q ss_pred HHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 029054 135 ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW 197 (200)
Q Consensus 135 ~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~ 197 (200)
.+.+....|...+...+.|+..- +.....-|.....-.. +|++|.|++++.+++.+|.
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~e---i~~lr~~iE~~K~~~l--r~~~g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTE---IANLRTEIESLKWDTL--RWLVGVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666432 3334444443333222 4666655555445554443
No 69
>PHA02650 hypothetical protein; Provisional
Probab=50.09 E-value=24 Score=24.54 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIYW 197 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~ 197 (200)
|+..++++|++++++.|
T Consensus 53 ii~i~~v~i~~l~~flY 69 (81)
T PHA02650 53 IFLIFSLIIVALFSFFV 69 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34433444444444433
No 70
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=49.75 E-value=40 Score=22.18 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhhchHHHHHHHHH
Q 029054 166 QILSSIKRKKSMDTIILALVASV 188 (200)
Q Consensus 166 ~~l~~I~rR~~~d~~Il~~vi~~ 188 (200)
.+|++=.+|++.-.++++++.++
T Consensus 31 eil~ker~R~r~~~~~~~li~aL 53 (64)
T COG4068 31 EILNKERKRQRNFMILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555455555555566655433
No 71
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=49.74 E-value=28 Score=20.68 Aligned_cols=10 Identities=20% Similarity=1.062 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 029054 190 TFLIFIYWVT 199 (200)
Q Consensus 190 i~~~~~~~~~ 199 (200)
+++++++||+
T Consensus 22 ~imliif~f~ 31 (43)
T PF11395_consen 22 IIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHH
Confidence 3344455553
No 72
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=48.47 E-value=22 Score=23.06 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHh
Q 029054 178 DTIILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 178 d~~Il~~vi~~~i~~~~~~~~~ 199 (200)
|......++.+|++|+++++|.
T Consensus 12 d~~~~lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 12 DYSGPLLILIISFVFFLITSLG 33 (61)
T ss_pred cchhHHHHHHHHHHHHHHhhhc
Confidence 4444444556677777777663
No 73
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=48.08 E-value=20 Score=25.38 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC
Q 029054 179 TIILALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 179 ~~Il~~vi~~~i~~~~~~~~~K 200 (200)
.+.+.++++++++++++|...|
T Consensus 62 ~fg~~~vVGvvLlv~viwLl~~ 83 (87)
T PF11190_consen 62 DFGATVVVGVVLLVFVIWLLTK 83 (87)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 4566777888888887776654
No 74
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=47.65 E-value=70 Score=23.37 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=22.8
Q ss_pred HHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhh
Q 029054 138 GALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK 175 (200)
Q Consensus 138 ~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~ 175 (200)
+....|.+.|+.-.-+....+.+|..+..+|..|+.|.
T Consensus 60 e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566555555566666666666666666663
No 75
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=47.18 E-value=1e+02 Score=24.42 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=15.4
Q ss_pred HHHHHHhhccCChHHHHHHHHHHhhhh--chHHHHHH
Q 029054 151 NSKLSNVSSRLPSVNQILSSIKRKKSM--DTIILALV 185 (200)
Q Consensus 151 ~~rl~~~~~~l~~s~~~l~~I~rR~~~--d~~Il~~v 185 (200)
..++..+...+-.....-..|..+..+ ++++++|+
T Consensus 63 ~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl 99 (180)
T PF04678_consen 63 RKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGL 99 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555333 34444443
No 76
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=47.15 E-value=35 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhH
Q 029054 125 QMDSVISQAQATLGALVFQRSTFGGI 150 (200)
Q Consensus 125 ~~d~~l~~g~~~l~~L~~Qr~~l~~~ 150 (200)
.+-++.+..+.+++++..|-|.+++.
T Consensus 63 rlr~va~rvQ~vlgd~At~gERl~al 88 (156)
T PF08372_consen 63 RLRSVAGRVQNVLGDVATQGERLQAL 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566677777777777666554
No 77
>PHA03054 IMV membrane protein; Provisional
Probab=46.40 E-value=31 Score=23.48 Aligned_cols=18 Identities=11% Similarity=0.384 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIYWV 198 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~~ 198 (200)
|+..++++|++++++.|+
T Consensus 52 ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 52 IIIFFIVLILLLLIYLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445555544443
No 78
>PHA03164 hypothetical protein; Provisional
Probab=46.19 E-value=32 Score=23.85 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhchHH-HHHHH
Q 029054 165 NQILSSIKRKKSMDTII-LALVA 186 (200)
Q Consensus 165 ~~~l~~I~rR~~~d~~I-l~~vi 186 (200)
+.--+.++.|.++-.+| +.|.+
T Consensus 45 rtawnlwnnrRktftFlvLtgLa 67 (88)
T PHA03164 45 RTAWNLWNNRRKTFTFLVLTGLA 67 (88)
T ss_pred chhHHHHHhhhheeehHHHHHHH
Confidence 34455677777777765 44433
No 79
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.81 E-value=1.1e+02 Score=22.09 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Q 029054 25 SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAK 81 (200)
Q Consensus 25 ~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~ 81 (200)
..++..+++.+.=++.++..+...|+.. .+.+.+-.+.+.+.+.+.+...++.-
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~---dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRD---DVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455556666777788888888998753 46666667777787777777776554
No 80
>PHA02819 hypothetical protein; Provisional
Probab=45.53 E-value=32 Score=23.36 Aligned_cols=19 Identities=26% Similarity=0.697 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIYWV 198 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~ 198 (200)
+|+..++++|++++++.|+
T Consensus 49 ~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 49 LIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544443
No 81
>PHA02975 hypothetical protein; Provisional
Probab=45.26 E-value=33 Score=23.18 Aligned_cols=18 Identities=11% Similarity=0.416 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIYWV 198 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~~ 198 (200)
|+..+.++|++++++.|+
T Consensus 48 ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 48 IIFIIFITCIAVFTFLYL 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555544443
No 82
>PHA02692 hypothetical protein; Provisional
Probab=44.82 E-value=34 Score=23.25 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 184 LVASVCTFLIFIYWV 198 (200)
Q Consensus 184 ~vi~~~i~~~~~~~~ 198 (200)
.++++|++++++.|+
T Consensus 53 ~~~~~~~vll~flYL 67 (70)
T PHA02692 53 LIAAAIGVLLCFHYL 67 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444556555555444
No 83
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=43.94 E-value=2.8e+02 Score=27.95 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHhhcc
Q 029054 63 ILQDLTQEFYRLRSSLKAKQEHASLLED 90 (200)
Q Consensus 63 ~L~~~~~e~~rl~~~~~~~~~R~~Ll~~ 90 (200)
.|...+++....+..++.+.+|.+|++.
T Consensus 404 ~~e~~~~dhe~~kneL~~a~ekld~mgt 431 (1265)
T KOG0976|consen 404 RLEQGKKDHEAAKNELQEALEKLDLMGT 431 (1265)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHhH
Confidence 4555677788888888888899999886
No 84
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=43.81 E-value=45 Score=23.50 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=7.4
Q ss_pred HHHHHhhhhchHHH
Q 029054 169 SSIKRKKSMDTIIL 182 (200)
Q Consensus 169 ~~I~rR~~~d~~Il 182 (200)
++|-+|.++-.++-
T Consensus 2 k~i~kK~K~k~~l~ 15 (96)
T PF13800_consen 2 KKILKKAKRKSRLR 15 (96)
T ss_pred chHHHHHHHHHHHH
Confidence 35556655555443
No 85
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=43.68 E-value=37 Score=23.23 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIYW 197 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~ 197 (200)
|++.++++|++++++.|
T Consensus 52 ii~ii~v~ii~~l~flY 68 (72)
T PF12575_consen 52 IISIIFVLIIVLLTFLY 68 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444555553433
No 86
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=42.96 E-value=44 Score=19.93 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFL 192 (200)
Q Consensus 180 ~Il~~vi~~~i~~ 192 (200)
+|.+.++++.+++
T Consensus 8 IIv~V~vg~~iii 20 (38)
T PF02439_consen 8 IIVAVVVGMAIII 20 (38)
T ss_pred HHHHHHHHHHHHH
Confidence 3444333333333
No 87
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.88 E-value=30 Score=27.50 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 029054 25 SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSS 77 (200)
Q Consensus 25 ~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~ 77 (200)
.++|..++++=+=+-=|+.|+.+ -..+.-.++|+++.+.|+|+|+ -++..
T Consensus 3 eD~EsklN~AIERnalLE~ELdE--KE~L~~~~QRLkDE~RDLKqEl-~V~ek 52 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDE--KENLREEVQRLKDELRDLKQEL-IVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 46677777776666667777744 2344457999999999999999 55443
No 88
>PRK06287 cobalt transport protein CbiN; Validated
Probab=42.71 E-value=27 Score=25.62 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIYWV 198 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~ 198 (200)
.|+++||+++++++++|.+
T Consensus 79 ~ilsgiiGv~i~l~l~~~~ 97 (107)
T PRK06287 79 EIIAMVIGTLLVLALAYGV 97 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677788887777766644
No 89
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=42.38 E-value=3.4e+02 Score=26.67 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHhhhHHHHHHHhhcc
Q 029054 135 ATLGALVFQRSTFGGINSKLSNVSSR 160 (200)
Q Consensus 135 ~~l~~L~~Qr~~l~~~~~rl~~~~~~ 160 (200)
.|.+.|..|-+.|...-+++.++.+.
T Consensus 689 ~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 689 TIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444433
No 90
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.16 E-value=1.1e+02 Score=25.66 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029054 21 NDLESGIDWLLKQLQQVNIQMQDWVSSG 48 (200)
Q Consensus 21 ~~~~~~Ie~~l~e~~~~~~~m~~~v~~~ 48 (200)
+.+..+|+..|..+.+-++..+..-.+.
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i~~K~ 31 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEIYEKV 31 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777665544
No 91
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=42.14 E-value=1.3e+02 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029054 20 ENDLESGIDWLLKQLQQVNIQMQDWVS 46 (200)
Q Consensus 20 ~~~~~~~Ie~~l~e~~~~~~~m~~~v~ 46 (200)
.---+++|...|+++++++..-..-..
T Consensus 25 ~I~~Er~v~~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 25 EILEERDVVEKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhHh
Confidence 344567899999999999987776554
No 92
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.35 E-value=1.1e+02 Score=30.15 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=46.1
Q ss_pred HHHHHH--hHHHHhHHHHHHHHH------HHHHHHH-------HHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHH-
Q 029054 110 QALLKE--HASINRSTGQMDSVI------SQAQATL-------GALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR- 173 (200)
Q Consensus 110 ~~ll~e--~~~L~~S~~~~d~~l------~~g~~~l-------~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~r- 173 (200)
-.+|.| +-+.+....++-.+- ..|-+++ .++..|...|.-+-=.+......-|+++.+.+...+
T Consensus 594 V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kv 673 (929)
T KOG2062|consen 594 VSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKV 673 (929)
T ss_pred HHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHH
Confidence 345533 335555555554442 3344444 467889999999988999999888888866554443
Q ss_pred --hhhhchHH
Q 029054 174 --KKSMDTII 181 (200)
Q Consensus 174 --R~~~d~~I 181 (200)
-+..|.+.
T Consensus 674 I~dKhEd~~a 683 (929)
T KOG2062|consen 674 INDKHEDGMA 683 (929)
T ss_pred hhhhhhHHHH
Confidence 46666554
No 93
>COG4420 Predicted membrane protein [Function unknown]
Probab=40.98 E-value=51 Score=26.78 Aligned_cols=44 Identities=2% Similarity=-0.031 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHH
Q 029054 123 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ 166 (200)
Q Consensus 123 ~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~ 166 (200)
.+.+.+.+..-..+..+...|.+.=....+|+-+--..+++|..
T Consensus 16 ~~~~~~~l~~~~~i~~~~~e~~~~~~t~gdR~ad~ia~f~Gsw~ 59 (191)
T COG4420 16 PARLFELLRENTPISSDRREEFEDGETFGDRVADKIARFGGSWA 59 (191)
T ss_pred HHHHhHHHHhcchhhcchHHHHhcccchhhhHHHHHHHHcCChH
Confidence 33444444444555566666666666677777777777777654
No 94
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=40.84 E-value=61 Score=18.06 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIY 196 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~ 196 (200)
+|.++++.++++..++|
T Consensus 5 vi~g~llv~lLl~YLvY 21 (29)
T PRK14750 5 IVCGALLVLLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34454443444444444
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.46 E-value=32 Score=25.91 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 029054 180 IILALVASVCT 190 (200)
Q Consensus 180 ~Il~~vi~~~i 190 (200)
.+++|||++.+
T Consensus 72 gv~aGvIg~Il 82 (122)
T PF01102_consen 72 GVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666665443
No 96
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=40.08 E-value=1.1e+02 Score=28.95 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 029054 20 ENDLESGIDWLLKQLQQVNIQMQDWVSSGG 49 (200)
Q Consensus 20 ~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~ 49 (200)
.+.+.++|++.|.+..+-++..+..-.+..
T Consensus 3 ~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~ 32 (575)
T KOG2150|consen 3 KRKLQQEIDRCLKKVDEGVEIFDEIYEKLH 32 (575)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 567899999999999999999988776654
No 97
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.49 E-value=1.5e+02 Score=23.94 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=33.1
Q ss_pred chhHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCc----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 029054 17 DAAENDLES---GIDWLLKQLQQVNIQMQDWVSSGGS----EMVSHTLTRHQEILQDLTQEFYRLR 75 (200)
Q Consensus 17 ~~~~~~~~~---~Ie~~l~e~~~~~~~m~~~v~~~~~----~~~~~~l~r~r~~L~~~~~e~~rl~ 75 (200)
+++-..+-. ..+..+..+.+.|..|+.++....+ +.+...++..+.....|+..+.+++
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 4456677788889999999877653 3333344444444444443333333
No 98
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=38.84 E-value=23 Score=21.74 Aligned_cols=17 Identities=18% Similarity=0.663 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029054 182 LALVASVCTFLIFIYWV 198 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~ 198 (200)
+.++|.+|+-++++.|.
T Consensus 4 l~~liviCiTvl~~~~l 20 (43)
T PF01848_consen 4 LLCLIVICITVLIFTWL 20 (43)
T ss_pred ehhHHHHHHHHHHHHHH
Confidence 44566677777766665
No 99
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=38.56 E-value=30 Score=23.56 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 184 LVASVCTFLIFIYWV 198 (200)
Q Consensus 184 ~vi~~~i~~~~~~~~ 198 (200)
|+.|+|.+.+++|..
T Consensus 13 G~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 13 GIFAVLFVWLLFYVL 27 (71)
T ss_pred CcHHHHHHHHHHHHH
Confidence 666677666666654
No 100
>PF13190 PDGLE: PDGLE domain
Probab=37.69 E-value=44 Score=23.46 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029054 180 IILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~~ 199 (200)
.++++|+++.+++.++|...
T Consensus 67 ~~lsgivGv~~~~~l~~~i~ 86 (88)
T PF13190_consen 67 TILSGIVGVALTLALAYGIG 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888777654
No 101
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=35.87 E-value=1e+02 Score=18.61 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHh
Q 029054 60 HQEILQDLTQEFYRLRSSLKAKQEHASL 87 (200)
Q Consensus 60 ~r~~L~~~~~e~~rl~~~~~~~~~R~~L 87 (200)
.+++|.+.++|+++.|..+-.+ -|.+|
T Consensus 9 KqEIL~EvrkEl~K~K~EIIeA-~~~eL 35 (40)
T PF08776_consen 9 KQEILEEVRKELQKVKEEIIEA-IRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3578889999999988876543 34444
No 102
>PHA02849 putative transmembrane protein; Provisional
Probab=35.83 E-value=45 Score=23.17 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIF 194 (200)
Q Consensus 181 Il~~vi~~~i~~~~ 194 (200)
|+.+|+.+|++.++
T Consensus 20 i~v~v~vI~i~~fl 33 (82)
T PHA02849 20 ILVFVLVISFLAFM 33 (82)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 103
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=35.42 E-value=45 Score=23.44 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 029054 188 VCTFLIFIY 196 (200)
Q Consensus 188 ~~i~~~~~~ 196 (200)
+.+|++++|
T Consensus 22 VF~fL~lLi 30 (85)
T PRK03814 22 VFIFLTLLV 30 (85)
T ss_pred HHHHHHHHH
Confidence 333333333
No 104
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=34.93 E-value=35 Score=30.08 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=12.6
Q ss_pred HHHhhhhchHHH---HHHHHHHHHHHHHHHH
Q 029054 171 IKRKKSMDTIIL---ALVASVCTFLIFIYWV 198 (200)
Q Consensus 171 I~rR~~~d~~Il---~~vi~~~i~~~~~~~~ 198 (200)
...+.+++.+++ ++|+++++.++.+|||
T Consensus 103 ~~~~~~~~~~~~~~~~lv~~vvl~l~~~www 133 (331)
T PRK10856 103 GKRRKKRDGWLMTFTWLVLFVVIGLTGAWWW 133 (331)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHHHh
Confidence 344555555443 3444334444434444
No 105
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=34.00 E-value=1.1e+02 Score=18.38 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=12.5
Q ss_pred HHHHhhhhchHHHHHHH
Q 029054 170 SIKRKKSMDTIILALVA 186 (200)
Q Consensus 170 ~I~rR~~~d~~Il~~vi 186 (200)
.|+||..-|.+.+|++.
T Consensus 5 dm~RR~lmN~ll~Gava 21 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAVA 21 (39)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhHH
Confidence 48899999998776443
No 106
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.88 E-value=59 Score=21.41 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=6.8
Q ss_pred HHHHHHHHHH--HHHHHh
Q 029054 184 LVASVCTFLI--FIYWVT 199 (200)
Q Consensus 184 ~vi~~~i~~~--~~~~~~ 199 (200)
+++.+.++|+ ++|.|+
T Consensus 14 ~t~~~~l~fiavi~~ayr 31 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 3344444444 444443
No 107
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.75 E-value=1.4e+02 Score=19.78 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=18.7
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 029054 147 FGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLI 193 (200)
Q Consensus 147 l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~ 193 (200)
+++...++..+.++.-..-+ +|.|++|++++.++
T Consensus 36 i~~~~~~l~~I~~n~kW~~r-------------~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 36 IKNLNKQLEKIKSNTKWIWR-------------TIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 55666666655554444433 55666665554444
No 108
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=33.26 E-value=49 Score=23.81 Aligned_cols=19 Identities=16% Similarity=0.001 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIYWV 198 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~ 198 (200)
.|.+.+|+.+++.|.||-|
T Consensus 60 ~is~a~i~alViaIY~YTf 78 (108)
T KOG4782|consen 60 HISFAGIGALVIAIYGYTF 78 (108)
T ss_pred hhhhHHHHHHHHHhhhhee
Confidence 4555567777777777744
No 109
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.94 E-value=1.5e+02 Score=24.68 Aligned_cols=15 Identities=40% Similarity=0.538 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHh
Q 029054 62 EILQDLTQEFYRLRS 76 (200)
Q Consensus 62 ~~L~~~~~e~~rl~~ 76 (200)
..|+++.+||.+.-.
T Consensus 86 ~YLedL~~EF~~~~~ 100 (216)
T KOG0862|consen 86 SYLEDLAQEFDKSYG 100 (216)
T ss_pred HHHHHHHHHHHHhcc
Confidence 459999999987644
No 110
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=32.86 E-value=64 Score=17.60 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 029054 182 LALVASVCTFLIFIYW 197 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~ 197 (200)
+++++++.++..++|.
T Consensus 2 i~~~l~~~L~~YL~~a 17 (26)
T TIGR02115 2 ILLVLAVGLFIYLFYA 17 (26)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555553
No 111
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.69 E-value=2.1e+02 Score=21.61 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHH
Q 029054 117 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ 166 (200)
Q Consensus 117 ~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~ 166 (200)
.||++-...+|+..++-.+|.+++..=++-+..++..+..+...+.....
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655555555555555554444433333
No 112
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=32.40 E-value=88 Score=16.88 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 029054 59 RHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 59 r~r~~L~~~~~e~~rl~~~~ 78 (200)
.|...|..|..|+.+++...
T Consensus 2 ~Yqakla~YqaeLa~vqk~n 21 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKAN 21 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 46677778888887777643
No 113
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=32.37 E-value=51 Score=24.88 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=13.0
Q ss_pred hhchHHHHHHHHHHHHHHHHHH
Q 029054 176 SMDTIILALVASVCTFLIFIYW 197 (200)
Q Consensus 176 ~~d~~Il~~vi~~~i~~~~~~~ 197 (200)
.=|++.++....+++++-++||
T Consensus 216 viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 216 VIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhC
Confidence 3466666654555566667776
No 114
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=32.05 E-value=51 Score=23.78 Aligned_cols=6 Identities=33% Similarity=0.102 Sum_probs=2.3
Q ss_pred hchHHH
Q 029054 177 MDTIIL 182 (200)
Q Consensus 177 ~d~~Il 182 (200)
||-.|+
T Consensus 50 RN~GIl 55 (103)
T PF06422_consen 50 RNFGIL 55 (103)
T ss_pred hhHHHH
Confidence 344333
No 115
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=31.76 E-value=51 Score=27.39 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 029054 182 LALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~~K 200 (200)
+.+++.+++++++.|+++|
T Consensus 195 ~~vl~fL~il~~l~y~~kk 213 (219)
T PF02167_consen 195 LKVLGFLLILTVLAYLLKK 213 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555543
No 116
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=31.45 E-value=72 Score=23.20 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=12.6
Q ss_pred hhchHHHHHHHHHHHHHHHHHH
Q 029054 176 SMDTIILALVASVCTFLIFIYW 197 (200)
Q Consensus 176 ~~d~~Il~~vi~~~i~~~~~~~ 197 (200)
++..++.|..|+.+++.+.+|-
T Consensus 48 R~rN~~Tgl~L~~~v~gIY~YT 69 (100)
T PF09813_consen 48 RRRNLLTGLALGAFVVGIYAYT 69 (100)
T ss_pred hhhhHHHHHHHHHHHHHHHhhe
Confidence 3445666766666666655553
No 117
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=31.25 E-value=99 Score=17.32 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIYW 197 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~ 197 (200)
+++++++++.+++.++|.
T Consensus 5 ~~l~~~va~~L~vYL~~A 22 (29)
T PRK14759 5 YSLAGAVSLGLLIYLTYA 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666555553
No 118
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.74 E-value=4.1e+02 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhHHhHHHHHHhhcc
Q 029054 67 LTQEFYRLRSSLKAKQEHASLLED 90 (200)
Q Consensus 67 ~~~e~~rl~~~~~~~~~R~~Ll~~ 90 (200)
|++|+.-+...+++++.|.+.|..
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLEe 265 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLEE 265 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666777777777777777777754
No 119
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=30.19 E-value=1.9e+02 Score=20.10 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 029054 135 ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFI 195 (200)
Q Consensus 135 ~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~ 195 (200)
.+-+++..+...|+.+++-+. .+.+-+..-+.--+.-.+++.+|+++|+|
T Consensus 40 ~~~~e~~~~~~~l~~s~~ll~-----------~l~r~~~~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 40 STNDEYDGQSSLLKKSRKLLK-----------KLERRDKTDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555444 33344444445545544344455544443
No 120
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.15 E-value=79 Score=21.50 Aligned_cols=18 Identities=28% Similarity=0.347 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIYWV 198 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~~ 198 (200)
|+++|+++++.+++-||+
T Consensus 7 il~ivl~ll~G~~~G~fi 24 (71)
T COG3763 7 ILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 121
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=29.40 E-value=2e+02 Score=19.99 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 029054 56 TLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 56 ~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
...+....+...-.+|.++...+
T Consensus 72 ~~~KL~~df~~~l~~fq~~q~~~ 94 (102)
T PF14523_consen 72 QREKLSRDFKEALQEFQKAQRRY 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 122
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=29.01 E-value=1e+02 Score=23.11 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029054 17 DAAENDLESGIDWLLKQLQQVNIQMQDWVSSG 48 (200)
Q Consensus 17 ~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~ 48 (200)
++.++....+|+..++.++.=+.+|+.+|.+.
T Consensus 79 ~~~~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~ 110 (121)
T TIGR02978 79 GQSPRQALREVKREFRDLERRLRNMERYVTSD 110 (121)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45688889999999999999999999999654
No 123
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.62 E-value=2e+02 Score=19.77 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 029054 57 LTRHQEILQDLTQEFYRLRSSLKAKQEHAS 86 (200)
Q Consensus 57 l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~ 86 (200)
+..|...|..++++...+........+|..
T Consensus 59 ~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~ 88 (92)
T PF14712_consen 59 LDPYVKKLVNIKKRMSNLHERLQKLKKRAD 88 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334888888888888888777766666643
No 124
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=28.37 E-value=69 Score=21.61 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=27.7
Q ss_pred HhhccCChHHHHHHHHHHhhhhchHHHHHHHHH
Q 029054 156 NVSSRLPSVNQILSSIKRKKSMDTIILALVASV 188 (200)
Q Consensus 156 ~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~ 188 (200)
+++..+|.+..++..|++=+.--.+.++.-|+-
T Consensus 19 elA~~vgVsRQTi~~iEkgky~Psl~La~kia~ 51 (68)
T COG1476 19 ELAKLVGVSRQTIIAIEKGKYNPSLELALKIAR 51 (68)
T ss_pred HHHHHcCcCHHHHHHHHcCCCCchHHHHHHHHH
Confidence 457789999999999999988889998865533
No 125
>PHA02657 hypothetical protein; Provisional
Probab=28.34 E-value=69 Score=22.67 Aligned_cols=10 Identities=20% Similarity=0.673 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 029054 184 LVASVCTFLI 193 (200)
Q Consensus 184 ~vi~~~i~~~ 193 (200)
++..+|++.+
T Consensus 33 fv~vI~il~f 42 (95)
T PHA02657 33 FIFVVCILIY 42 (95)
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 126
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=28.18 E-value=90 Score=20.15 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIY 196 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~ 196 (200)
+|++|++++.++...++
T Consensus 33 ~Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 33 FIIVGIILAALFVAGLV 49 (56)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666665555554443
No 127
>PHA03010 hypothetical protein; Provisional
Probab=28.14 E-value=76 Score=28.65 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029054 23 LESGIDWLLKQLQQVNIQMQDWV 45 (200)
Q Consensus 23 ~~~~Ie~~l~e~~~~~~~m~~~v 45 (200)
+..=++....+.-++|+.|+.-+
T Consensus 291 i~di~q~~~nqi~elc~eis~~i 313 (546)
T PHA03010 291 ISDIIQEEFNQIFELCEEISIMI 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777888777544
No 128
>PTZ00234 variable surface protein Vir12; Provisional
Probab=28.13 E-value=46 Score=30.51 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=7.9
Q ss_pred HHHHhhhhchHHHH-HHHH
Q 029054 170 SIKRKKSMDTIILA-LVAS 187 (200)
Q Consensus 170 ~I~rR~~~d~~Il~-~vi~ 187 (200)
.+..--.|| +||| +|||
T Consensus 358 ~~dSn~~rn-iim~~ailG 375 (433)
T PTZ00234 358 ILKSEYFRH-SIVGASIIG 375 (433)
T ss_pred hhhhHHHHH-HHHHHHHHH
Confidence 334444444 5555 4443
No 129
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=27.92 E-value=76 Score=22.92 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=42.0
Q ss_pred chhhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHH
Q 029054 2 HSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFY 72 (200)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~ 72 (200)
++.-+||++..+++.++..+.+...+-..--++++-..+|..+....|.+-+ +.=.+..|--+++++.
T Consensus 11 ~tLi~las~~~spev~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~lns~pqP~l---vPFLK~~lp~Lr~~l~ 78 (96)
T PF07531_consen 11 NTLIQLASDKQSPEVGENVRELVQNLVDGKIEAEEFTSKLQEELNSSPQPYL---VPFLKKSLPALRQELP 78 (96)
T ss_dssp HHHHHHHCCSC-CCHHHHHHHHHHHHHTTSS-HHHHHHHHHHHCTSS--TTH---HHHHHHHHHHHHHCHC
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCcch---HHHHHHhHHHHHHHHH
Confidence 4556777774556666777777766665556779999999999988876543 3333334555554443
No 130
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=27.84 E-value=1.1e+02 Score=22.89 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=28.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029054 16 VDAAENDLESGIDWLLKQLQQVNIQMQDWVSSG 48 (200)
Q Consensus 16 ~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~ 48 (200)
.++.++.+..+|+..++.++.=+.+|+.+|.+.
T Consensus 75 ~~~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~ 107 (118)
T PRK10697 75 QQPSSSELLDEVDRELAAGEQRLREMERYVTSD 107 (118)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345788899999999999999999999999654
No 131
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=27.60 E-value=1.4e+02 Score=20.77 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhhchHHHHHHH
Q 029054 166 QILSSIKRKKSMDTIILALVA 186 (200)
Q Consensus 166 ~~l~~I~rR~~~d~~Il~~vi 186 (200)
..++.+.+..+-.-+++.+++
T Consensus 4 ~~~~~~~~~~~l~i~l~~~v~ 24 (97)
T PF04999_consen 4 IIIRDIKRQKKLIILLVIVVL 24 (97)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 455666666555555444443
No 132
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=27.42 E-value=98 Score=19.15 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 029054 182 LALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~~K 200 (200)
+.++++.|++++++-.++|
T Consensus 30 i~aviGAiill~i~~~i~r 48 (48)
T PF04226_consen 30 IVAVIGAIILLFIYRLIRR 48 (48)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3456667777776665543
No 133
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.16 E-value=1.8e+02 Score=27.11 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHH-HHHHHHHHhHHHhhhHHHHHHHhhccC
Q 029054 110 QALLKEHASINRSTGQMDSVISQAQ-ATLGALVFQRSTFGGINSKLSNVSSRL 161 (200)
Q Consensus 110 ~~ll~e~~~L~~S~~~~d~~l~~g~-~~l~~L~~Qr~~l~~~~~rl~~~~~~l 161 (200)
+.|..|+++|..-...+|.-++++. +...++..|++.|+.-+.++.+....+
T Consensus 83 ~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>PF05933 Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L); InterPro: IPR009230 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from fungi. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit differs in sequence between fungi, Metazoa (IPR001421 from INTERPRO) and plants (IPR003319 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=27.05 E-value=62 Score=20.35 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhC
Q 029054 187 SVCTFLIFIYWVTK 200 (200)
Q Consensus 187 ~~~i~~~~~~~~~K 200 (200)
+++++.+++|++||
T Consensus 16 ~f~~l~il~yl~Sk 29 (48)
T PF05933_consen 16 GFLILSILLYLFSK 29 (48)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555556666664
No 135
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.00 E-value=1.8e+02 Score=24.95 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=41.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHH
Q 029054 118 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 170 (200)
Q Consensus 118 ~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~ 170 (200)
-|..-..++-++=.+|..+-.+|..|...|.+++.++-..+.++...|.=+++
T Consensus 219 NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 34444455555557888888999999999999999999998888887765554
No 136
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=26.46 E-value=1.3e+02 Score=16.75 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 029054 179 TIILALVASVCTFLIFIYWV 198 (200)
Q Consensus 179 ~~Il~~vi~~~i~~~~~~~~ 198 (200)
.||+|...++++-.+...|+
T Consensus 5 aWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 36777555555544444444
No 137
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=26.06 E-value=1.2e+02 Score=25.30 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 029054 179 TIILALVASVCTFLIF 194 (200)
Q Consensus 179 ~~Il~~vi~~~i~~~~ 194 (200)
|+|++.|++++++|++
T Consensus 187 W~i~~~v~~i~~i~vv 202 (226)
T PHA02662 187 WTLLLAVAAVTVLGVV 202 (226)
T ss_pred chhHHHHHHHHHHHHH
Confidence 4566777766666665
No 138
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=26.04 E-value=1.4e+02 Score=17.96 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029054 180 IILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~~ 199 (200)
++.|+++.+.-+...+++.|
T Consensus 12 l~aG~~iVv~~i~~ali~VS 31 (39)
T PF06596_consen 12 LVAGAVIVVIPIAGALIFVS 31 (39)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhheEEEe
Confidence 45566454544444454544
No 139
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=25.98 E-value=88 Score=19.50 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIF 194 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~ 194 (200)
+|+..++++|+++.+
T Consensus 7 iili~iv~~Cl~lyl 21 (47)
T PRK10299 7 VVLVVVVLACLLLWA 21 (47)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344566666777543
No 140
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=25.58 E-value=1.7e+02 Score=24.07 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 23 LESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 23 ~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
.-.+||..++.+..-+.+|+.-|...-.. -...+|-....|++||+++-..+.
T Consensus 6 d~~~Ve~kid~f~~F~k~MD~svk~l~~~----~~e~~kk~~~~~kkEyqkiG~af~ 58 (207)
T cd07669 6 DLQDVEERVDVFKAFSKKMDDSVLQLSNV----ASELVRKHLGGFRKEFQKLGNAFQ 58 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcccccHHHHHHHHHHH
Confidence 34789999999999999999988665321 234455568888999999877654
No 141
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=25.40 E-value=1.1e+02 Score=20.21 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=13.4
Q ss_pred HhhhhchHHHHHHHHHHHHHHHHHHHhC
Q 029054 173 RKKSMDTIILALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 173 rR~~~d~~Il~~vi~~~i~~~~~~~~~K 200 (200)
.=..+|-+|.+..+ +-+++.+-||+||
T Consensus 6 ~vl~~ngLitaFa~-vG~~m~~S~~lS~ 32 (60)
T PF03818_consen 6 KVLTKNGLITAFAV-VGIIMWVSYWLSK 32 (60)
T ss_pred HHHhhCchHHHHHH-HHHHHHHHHHHHH
Confidence 33445666665332 3344445556553
No 142
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=25.28 E-value=1.8e+02 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 24 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 24 ~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
-.+||..++.+..-+.+|+.-|...... -...+|-....|++||+|+-..++
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~----~~e~~kk~~~~~KkEyqkiG~af~ 58 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTV----GQEHWKRCTGPLPKEYQKIGKALQ 58 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcccccHHHHHHHHHHH
Confidence 4689999999999999999988765321 133444557888999999877654
No 143
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=24.76 E-value=58 Score=24.34 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLI 193 (200)
Q Consensus 180 ~Il~~vi~~~i~~~ 193 (200)
+|+|.|.+.|++++
T Consensus 90 l~LGvV~GG~i~vL 103 (127)
T PF06040_consen 90 LILGVVAGGLIAVL 103 (127)
T ss_pred hhHHHHhccHHHHH
Confidence 45666666665444
No 144
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=24.49 E-value=98 Score=16.16 Aligned_cols=16 Identities=31% Similarity=0.465 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 029054 56 TLTRHQEILQDLTQEF 71 (200)
Q Consensus 56 ~l~r~r~~L~~~~~e~ 71 (200)
-++.|...+.++++||
T Consensus 6 LlrkY~g~i~~Lr~Ef 21 (22)
T PF03789_consen 6 LLRKYSGYISSLRQEF 21 (22)
T ss_pred HHHHHhHhHHHHHHHh
Confidence 4677888888888876
No 145
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=24.42 E-value=1.7e+02 Score=23.38 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=46.3
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHH---H----
Q 029054 110 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTII---L---- 182 (200)
Q Consensus 110 ~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~I---l---- 182 (200)
|-+...--.+.=+..-+|=+++--.+++-=|+. ++..||-+....+|-.- .+-||+.+|+-| |
T Consensus 39 dE~Wtavl~l~FtsmElnilYSYvievL~cLht------~VlEkLPdL~r~LPTlA----SvLrrKvkN~~Ir~vwesvL 108 (196)
T PF15080_consen 39 DEMWTAVLALKFTSMELNILYSYVIEVLICLHT------RVLEKLPDLVRGLPTLA----SVLRRKVKNKRIRVVWESVL 108 (196)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH------HHHHHhhHHHhCcchHH----HHHHHHhhchHHHHHHHHHH
Confidence 334444445555555666666666677766664 35566666666666544 555677777644 2
Q ss_pred -------HHHHHHHHHHHHHH
Q 029054 183 -------ALVASVCTFLIFIY 196 (200)
Q Consensus 183 -------~~vi~~~i~~~~~~ 196 (200)
+-|-++|.|||.-+
T Consensus 109 ee~GLqE~dv~aLCtFfiahg 129 (196)
T PF15080_consen 109 EECGLQEGDVTALCTFFIAHG 129 (196)
T ss_pred HHcCCCcccHHHHHHHHHHhc
Confidence 12557799988644
No 146
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=24.11 E-value=99 Score=21.85 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=12.4
Q ss_pred HHHHHHHh--hhhchHHHH-HHHHHH
Q 029054 167 ILSSIKRK--KSMDTIILA-LVASVC 189 (200)
Q Consensus 167 ~l~~I~rR--~~~d~~Il~-~vi~~~ 189 (200)
+-+.|+-- .+=|++|++ |++++.
T Consensus 23 lFRavNfELy~kPNk~iM~~Gl~a~~ 48 (86)
T PF14937_consen 23 LFRAVNFELYVKPNKPIMAFGLIAIT 48 (86)
T ss_pred hhhhhCHHHhccCCchhhHHHHHHHH
Confidence 34444333 455899986 444443
No 147
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=24.02 E-value=1.1e+02 Score=22.28 Aligned_cols=18 Identities=6% Similarity=-0.250 Sum_probs=7.8
Q ss_pred HHH-HHHHHHHHHHHHHHH
Q 029054 181 ILA-LVASVCTFLIFIYWV 198 (200)
Q Consensus 181 Il~-~vi~~~i~~~~~~~~ 198 (200)
+++ ++.++++++.++++|
T Consensus 62 ~~f~~~~~~~v~~~~~~~y 80 (105)
T PF10183_consen 62 PFFFGFSGSLVFGGVFLAY 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 444 333334444455444
No 148
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=23.78 E-value=1.3e+02 Score=16.14 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIY 196 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~ 196 (200)
++++++++.++..++|
T Consensus 2 ~l~~~v~~~L~~YL~~ 17 (25)
T PF09604_consen 2 ILGGIVAVALFVYLFY 17 (25)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 149
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=23.75 E-value=2.6e+02 Score=19.49 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHH
Q 029054 21 NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLT 68 (200)
Q Consensus 21 ~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~ 68 (200)
..+...+...-+++.+.++.|.. .|+.+ ..|+.|+..+.+|.
T Consensus 14 ~~~~~~a~~~~~~l~~Al~~l~~----~pdnP--~~LA~~Qa~l~eyn 55 (80)
T PRK15326 14 AKFDTGVDNLQTQVTEALDKLAA----KPSDP--ALLAAYQSKLSEYN 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCCCH--HHHHHHHHHHHHHH
Confidence 34455555566666666666653 34222 25888888888886
No 150
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=23.73 E-value=2.1e+02 Score=18.39 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSG 48 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~ 48 (200)
+.-......+....+++.+.+.+|...+...
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666555
No 151
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.72 E-value=1.5e+02 Score=16.57 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIY 196 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~ 196 (200)
.|.|++.+++++..++|
T Consensus 5 vi~G~ilv~lLlgYLvy 21 (29)
T PRK14748 5 VITGVLLVFLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555444444444444
No 152
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=23.71 E-value=2.8e+02 Score=21.12 Aligned_cols=54 Identities=22% Similarity=0.431 Sum_probs=32.0
Q ss_pred hHHHHhHHHHHHHHHHHH-------HHHHHHHHHhHHHhhhHHHHHHHhhcc----CChHHHHHH
Q 029054 116 HASINRSTGQMDSVISQA-------QATLGALVFQRSTFGGINSKLSNVSSR----LPSVNQILS 169 (200)
Q Consensus 116 ~~~L~~S~~~~d~~l~~g-------~~~l~~L~~Qr~~l~~~~~rl~~~~~~----l~~s~~~l~ 169 (200)
++.|+.-+.-+.+++.|| .+++.--.+|+..|..++.++..+..+ +|++-+.++
T Consensus 51 s~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls 115 (177)
T PF12495_consen 51 SDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLS 115 (177)
T ss_pred cccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334444444455555444 344555567888888888888877764 455444443
No 153
>PF12409 P5-ATPase: P5-type ATPase cation transporter
Probab=23.69 E-value=81 Score=23.18 Aligned_cols=19 Identities=5% Similarity=0.335 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029054 181 ILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~~~ 199 (200)
.+.+|+.+-++.++++|+-
T Consensus 21 ~~l~ilT~Gll~L~~~W~p 39 (119)
T PF12409_consen 21 YFLCILTLGLLYLVFRWFP 39 (119)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 3455666666667777763
No 154
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=23.67 E-value=93 Score=18.93 Aligned_cols=9 Identities=33% Similarity=1.268 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 029054 189 CTFLIFIYW 197 (200)
Q Consensus 189 ~i~~~~~~~ 197 (200)
+++++++||
T Consensus 24 lL~fFLV~W 32 (44)
T PF08135_consen 24 LLFFFLVYW 32 (44)
T ss_pred HHHHHHHHH
Confidence 334444444
No 155
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=23.47 E-value=3.6e+02 Score=25.52 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=44.1
Q ss_pred HHhHHHHhHHHHHHHHHHHHH---------HHHHHHHHhHHHhhhHHHHHHHhh-----ccCChHHHHHHHHHHh
Q 029054 114 KEHASINRSTGQMDSVISQAQ---------ATLGALVFQRSTFGGINSKLSNVS-----SRLPSVNQILSSIKRK 174 (200)
Q Consensus 114 ~e~~~L~~S~~~~d~~l~~g~---------~~l~~L~~Qr~~l~~~~~rl~~~~-----~~l~~s~~~l~~I~rR 174 (200)
.-+.+.-.=++..|+++.+|. .+++.+..|++.|--..+|+.++. +.+|.|..-|..-.-+
T Consensus 253 g~~~stvtl~q~~deL~~ig~n~~~~P~~~~~rdei~aq~eqLi~~s~kv~EafRt~~~sqigns~qql~t~~~~ 327 (673)
T COG4192 253 GQTASTVTLHQLSDELDAIGHNDLSHPITVDGRDEIGAQSEQLILYSKKVEEAFRTNALSQIGNSQQQLITCDGQ 327 (673)
T ss_pred cCCchhhHHHHHHHHHHHhcCCcccCCchhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCchHHHHHHHhhH
Confidence 333444456788888888875 689999999999998888887754 4567777666555544
No 156
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=23.42 E-value=1.9e+02 Score=17.81 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029054 19 AENDLESGIDWLLKQLQQVNIQMQDWV 45 (200)
Q Consensus 19 ~~~~~~~~Ie~~l~e~~~~~~~m~~~v 45 (200)
.+..++.+|+..=.++...++.+..-+
T Consensus 4 ~~~~ie~dIe~tR~~La~tvd~L~~r~ 30 (49)
T PF12277_consen 4 SPDEIERDIERTRAELAETVDELAARL 30 (49)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467899999999999999999998655
No 157
>PHA02902 putative IMV membrane protein; Provisional
Probab=23.17 E-value=1.2e+02 Score=20.27 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 029054 184 LVASVCTFLIFIYW 197 (200)
Q Consensus 184 ~vi~~~i~~~~~~~ 197 (200)
+|+.+|++++..|-
T Consensus 12 ~v~Ivclliya~Yr 25 (70)
T PHA02902 12 IVIIFCLLIYAAYK 25 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666666553
No 158
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=23.17 E-value=2.1e+02 Score=18.27 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=9.1
Q ss_pred HHHHHhHHHHhHHHHHHHH
Q 029054 111 ALLKEHASINRSTGQMDSV 129 (200)
Q Consensus 111 ~ll~e~~~L~~S~~~~d~~ 129 (200)
.|-.-++.|.+++..++++
T Consensus 30 ~L~~Qre~L~~~~~kl~~i 48 (66)
T PF12352_consen 30 DLRSQREQLKRVRDKLDDI 48 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444
No 159
>PLN02943 aminoacyl-tRNA ligase
Probab=23.10 E-value=3.4e+02 Score=27.49 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 55 HTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 55 ~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
+.+.+-++.|.++..++..++..+.
T Consensus 924 evv~~e~~kl~~~~~~l~~~~~~l~ 948 (958)
T PLN02943 924 DVVRGVREKAAEAEEKIKLTKNRLA 948 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889899888888877654
No 160
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=22.82 E-value=88 Score=28.01 Aligned_cols=15 Identities=7% Similarity=-0.028 Sum_probs=8.1
Q ss_pred HHhhhhchHHHHHHH
Q 029054 172 KRKKSMDTIILALVA 186 (200)
Q Consensus 172 ~rR~~~d~~Il~~vi 186 (200)
-.|.++.+.+++|++
T Consensus 81 ~~r~~~R~~~~~G~~ 95 (385)
T PF06898_consen 81 LKRLRRRKGFVAGIV 95 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555666665443
No 161
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=22.76 E-value=1.2e+02 Score=18.43 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 182 LALVASVCTFLIFIY 196 (200)
Q Consensus 182 l~~vi~~~i~~~~~~ 196 (200)
+.++.++.++.+++|
T Consensus 16 lVglv~i~iva~~iY 30 (43)
T PF08114_consen 16 LVGLVGIGIVALFIY 30 (43)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 162
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=22.72 E-value=3.1e+02 Score=20.02 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRL 74 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl 74 (200)
++......+++....++++.++.+.......+ -...+..+++.+..|.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~y~~~~~~~ 128 (181)
T PF12729_consen 75 EERQEIEKEIDEARAEIDEALEEYEKLILSPE---EKQLLEEFKEAWKAYRKLRDQV 128 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777665332211 1124555555555554444433
No 163
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=22.53 E-value=2.4e+02 Score=20.39 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=6.1
Q ss_pred HHHHHHHHhhhhc
Q 029054 166 QILSSIKRKKSMD 178 (200)
Q Consensus 166 ~~l~~I~rR~~~d 178 (200)
.++..|+....+.
T Consensus 37 ~iI~~IN~~l~~a 49 (118)
T PF10256_consen 37 EIINTINQILKEA 49 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555553333
No 164
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=22.52 E-value=3.6e+02 Score=20.72 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=48.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 14 TKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 14 ~~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
.+.+.+-...-.+|-..+..+..++.+|.--....|.+ .+.++++.-..|-++|.++..-++
T Consensus 66 LEiDa~tr~~l~~il~sIg~la~Nin~i~~Aa~~~~~p----d~e~f~aER~~fGk~fA~ld~lLr 127 (147)
T PF07328_consen 66 LEIDAETRQKLEDILRSIGGLATNINQILKAANRTPRP----DYEAFRAERKAFGKEFADLDALLR 127 (147)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888999999999998877777754 477888888889999988876554
No 165
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=22.49 E-value=3e+02 Score=19.72 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=43.3
Q ss_pred chhhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 029054 2 HSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRL 74 (200)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl 74 (200)
++.-+|++..+.++.++..+.++..+=..=-++++-..++..+.+..|.+-. +.=.+..|--++++....
T Consensus 10 ~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~lns~~qP~l---vPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 10 TTLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFTSRLQEALNSPLQPYL---IPFLKNSLPLLRRELLHC 79 (92)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCCCchh---HHHHHHhhHHHHHHHHHH
Confidence 4555667775546666667777666655555788888999998888775533 333333355555444433
No 166
>PRK11281 hypothetical protein; Provisional
Probab=22.28 E-value=9e+02 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 029054 56 TLTRHQEILQDLTQEFYRLRSSLKAKQ 82 (200)
Q Consensus 56 ~l~r~r~~L~~~~~e~~rl~~~~~~~~ 82 (200)
....+++..++|++......+.+++..
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~ 100 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQ 100 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555555555555555444444433
No 167
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.19 E-value=5.1e+02 Score=22.24 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHH-hhhhchH
Q 029054 131 SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR-KKSMDTI 180 (200)
Q Consensus 131 ~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~r-R~~~d~~ 180 (200)
++=..--.-.++|.+....+-..+..+..+.-..+.-|++=.+ +.+..++
T Consensus 194 ~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~ 244 (269)
T KOG0811|consen 194 EIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK 244 (269)
T ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3333333344789999999999999998888877766655444 3444443
No 168
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=22.11 E-value=30 Score=25.83 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIYW 197 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~ 197 (200)
||..|.+++++|-+||+
T Consensus 31 iL~VILgiLLliGCWYc 47 (118)
T PF14991_consen 31 ILIVILGILLLIGCWYC 47 (118)
T ss_dssp -----------------
T ss_pred eHHHHHHHHHHHhheee
Confidence 34444444555555554
No 169
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=22.09 E-value=1.7e+02 Score=17.85 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 184 LVASVCTFLIFIYWV 198 (200)
Q Consensus 184 ~vi~~~i~~~~~~~~ 198 (200)
.+.=+++++.++|++
T Consensus 14 T~fYf~Ill~L~ylY 28 (42)
T PF12459_consen 14 TLFYFAILLALIYLY 28 (42)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555566655
No 170
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.78 E-value=80 Score=27.20 Aligned_cols=15 Identities=7% Similarity=0.211 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIF 194 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~ 194 (200)
||+|++++.++++++
T Consensus 275 IaVG~~La~lvlivL 289 (306)
T PF01299_consen 275 IAVGAALAGLVLIVL 289 (306)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345544444444443
No 171
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=21.57 E-value=1.4e+02 Score=20.64 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=5.4
Q ss_pred HhHHHhhhHHHH
Q 029054 142 FQRSTFGGINSK 153 (200)
Q Consensus 142 ~Qr~~l~~~~~r 153 (200)
.-+..|+.++.|
T Consensus 27 k~K~~lratk~k 38 (79)
T PF15168_consen 27 KNKPILRATKLK 38 (79)
T ss_pred hccHHHHHHHHH
Confidence 334444444444
No 172
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=21.47 E-value=1.3e+02 Score=29.56 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=37.0
Q ss_pred HhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 029054 156 NVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 156 ~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~~ 199 (200)
+....+.+.--+.-.|.+-...|-.+++++.+++++++++|+|+
T Consensus 175 ~~~~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr 218 (727)
T COG1033 175 GVKLYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFR 218 (727)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888899999999999999988877788888888885
No 173
>PF15431 TMEM190: Transmembrane protein 190
Probab=21.34 E-value=1.3e+02 Score=22.44 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhC
Q 029054 188 VCTFLIFIYWVTK 200 (200)
Q Consensus 188 ~~i~~~~~~~~~K 200 (200)
++++.+.++||.|
T Consensus 73 ~Li~~iclFWWAk 85 (134)
T PF15431_consen 73 LLICSICLFWWAK 85 (134)
T ss_pred HHHHHHHHHHHHH
Confidence 4555556666654
No 174
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.26 E-value=6.5e+02 Score=23.18 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHH
Q 029054 123 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 171 (200)
Q Consensus 123 ~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I 171 (200)
+.++-+.+..|.+++.....|-..-..+.+-|-++.+++.....+=..|
T Consensus 312 nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~l 360 (439)
T KOG2911|consen 312 NKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDAL 360 (439)
T ss_pred cHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 4667777778888887777776666666666666666666555443333
No 175
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=21.07 E-value=1.2e+02 Score=25.69 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=25.7
Q ss_pred HHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 029054 144 RSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 144 r~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~~ 199 (200)
|.++...++||..+-. .-..|.+|.+++++..+++|++= .|+||+
T Consensus 201 rrQi~klnrRl~~lE~----------~n~~r~~re~~~y~~~va~~l~n-~w~w~~ 245 (246)
T PF05644_consen 201 RRQIIKLNRRLQALEE----------ENKERQQREMILYSITVAFWLLN-SWLWLR 245 (246)
T ss_pred HHHHHHHhHHHHHHHH----------HhHHHHhHHHHHHHHHHHHHHHH-HHHhhc
Confidence 4456666666664432 23456777777776555554443 566664
No 176
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=21.06 E-value=1.3e+02 Score=23.17 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHH
Q 029054 179 TIILALVASVCTFLI 193 (200)
Q Consensus 179 ~~Il~~vi~~~i~~~ 193 (200)
+.|++++++++.+-+
T Consensus 75 k~v~~~~~~~i~~s~ 89 (142)
T PF02936_consen 75 KKVFGGVFIFIGFSV 89 (142)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456655544444433
No 177
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=21.06 E-value=1.6e+02 Score=19.29 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=12.6
Q ss_pred hhchHHHHHHHHHHHHHHH
Q 029054 176 SMDTIILALVASVCTFLIF 194 (200)
Q Consensus 176 ~~d~~Il~~vi~~~i~~~~ 194 (200)
+|+-||...++++|++=++
T Consensus 17 ~r~e~itFl~la~~l~Pil 35 (62)
T COG4459 17 KRSEWITFLFLAFGLFPIL 35 (62)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4557887777777776443
No 178
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=21.03 E-value=5.2e+02 Score=22.78 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 029054 37 VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 80 (200)
Q Consensus 37 ~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~ 80 (200)
.-+.|+..+...+-|++ ..+...-.+|.+++++.++++..+..
T Consensus 272 ~qe~~e~~L~~LnlPTR-sElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 272 QQEIVEALLKMLNLPTR-SELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred HHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555552222 35677777888999888888877654
No 179
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=20.93 E-value=1.4e+02 Score=20.08 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 183 ALVASVCTFLIFIYW 197 (200)
Q Consensus 183 ~~vi~~~i~~~~~~~ 197 (200)
+.|+.+|+++++-||
T Consensus 19 AvvLLLsIl~~lt~~ 33 (66)
T PF13179_consen 19 AVVLLLSILAFLTYW 33 (66)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 180
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=20.92 E-value=1.3e+02 Score=23.06 Aligned_cols=15 Identities=7% Similarity=-0.062 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHH
Q 029054 179 TIILALVASVCTFLI 193 (200)
Q Consensus 179 ~~Il~~vi~~~i~~~ 193 (200)
+.|++++++++.+.+
T Consensus 75 k~v~~~~~~~i~~s~ 89 (136)
T cd00922 75 KTVFGGVLAFIGITG 89 (136)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456655444444333
No 181
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.84 E-value=3.8e+02 Score=20.26 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHh
Q 029054 31 LKQLQQVNIQMQDWV 45 (200)
Q Consensus 31 l~e~~~~~~~m~~~v 45 (200)
|++..++.+++..+|
T Consensus 77 lDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 77 LDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444333
No 182
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=20.81 E-value=53 Score=27.29 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIY 196 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~ 196 (200)
|++|++++.+++++.+
T Consensus 43 iVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 43 IVAGIMTVILVIFIVV 58 (221)
T ss_pred eecchhhhHHHHHHHH
Confidence 3455554444444333
No 183
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=20.81 E-value=2.4e+02 Score=23.47 Aligned_cols=6 Identities=33% Similarity=0.351 Sum_probs=2.3
Q ss_pred HHHHHH
Q 029054 130 ISQAQA 135 (200)
Q Consensus 130 l~~g~~ 135 (200)
|.+|.-
T Consensus 24 i~q~~~ 29 (251)
T COG5415 24 IHQLDV 29 (251)
T ss_pred HHHHHH
Confidence 333333
No 184
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=20.79 E-value=1.5e+02 Score=19.72 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC
Q 029054 179 TIILALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 179 ~~Il~~vi~~~i~~~~~~~~~K 200 (200)
|+++...++++++-.+++|..|
T Consensus 3 k~li~~gl~l~v~G~l~~~~~k 24 (64)
T PF11146_consen 3 KWLIVIGLILIVLGLLLPWLGK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4444333345666666666654
No 185
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.79 E-value=1.3e+02 Score=23.33 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=3.5
Q ss_pred HHHhhcc
Q 029054 84 HASLLED 90 (200)
Q Consensus 84 R~~Ll~~ 90 (200)
...||..
T Consensus 70 k~~LF~~ 76 (145)
T PF10661_consen 70 KNSLFTN 76 (145)
T ss_pred HHHhCcC
Confidence 3456643
No 186
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=20.77 E-value=1e+02 Score=27.62 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=7.6
Q ss_pred HhhhhchHHHHHHH
Q 029054 173 RKKSMDTIILALVA 186 (200)
Q Consensus 173 rR~~~d~~Il~~vi 186 (200)
.|.++.+.+++|++
T Consensus 79 ~r~~kRk~~~~G~~ 92 (382)
T TIGR02876 79 KRLRKRPGILIGIL 92 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666655443
No 187
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.52 E-value=2.7e+02 Score=23.01 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 24 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 24 ~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
-.+||..++....-+.+|+.-|...-.. .....|-....|++||+|+=..++
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~----~~e~~kk~~~~~KkEyqkiG~af~ 58 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHT----ANEFARKQVTGFKKEYQKVGQSFK 58 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccccHHHHHHHHHHH
Confidence 4688999999999999999988766321 122334457888999988877654
No 188
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.49 E-value=3.1e+02 Score=19.21 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 029054 24 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLR 75 (200)
Q Consensus 24 ~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~ 75 (200)
...|...|++++..++.++.-- . +...+.++.|..-++..+.++
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rn-----D---~l~~~L~~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRN-----D---HLHAQLQELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----h---HHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776321 1 234444444555554444443
No 189
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.37 E-value=3.6e+02 Score=19.78 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 029054 27 IDWLLKQLQQVNIQMQDWVSSGG 49 (200)
Q Consensus 27 Ie~~l~e~~~~~~~m~~~v~~~~ 49 (200)
|+.++.++.++++.++....+.+
T Consensus 10 ~~~l~~el~~L~d~lEevL~ssg 32 (104)
T COG4575 10 IDQLLAELQELLDTLEEVLKSSG 32 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35555555556666665555554
No 190
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=20.15 E-value=2.4e+02 Score=24.85 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhccc
Q 029054 55 HTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDF 91 (200)
Q Consensus 55 ~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~~ 91 (200)
..++...+.|.+...|++-++..+.-+.++..||.+.
T Consensus 182 kk~~~l~~~l~~~~~eL~~~~k~L~faqekn~Llqsl 218 (323)
T PF08537_consen 182 KKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSL 218 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999763
Done!