Query 029054
Match_columns 200
No_of_seqs 137 out of 557
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.4 6.1E-13 2.1E-17 92.6 8.1 72 108-179 10-81 (81)
2 1gl2_C VTI1B, vesicle transpor 99.2 1.4E-11 4.8E-16 82.2 4.8 63 111-173 3-65 (65)
3 1vcs_A Vesicle transport throu 98.8 2.1E-08 7.1E-13 72.5 8.3 61 15-75 31-94 (102)
4 2qyw_A Vesicle transport throu 98.7 7.2E-08 2.5E-12 69.7 8.3 59 16-78 43-101 (102)
5 3onj_A T-snare VTI1; helix, HA 98.7 5.2E-08 1.8E-12 69.8 7.4 62 14-79 26-90 (97)
6 1n7s_C SNAP-25A; neuronal snar 98.6 1.1E-07 3.6E-12 65.6 7.8 63 110-172 16-78 (79)
7 1nhl_A Synaptosomal-associated 98.3 1E-06 3.6E-11 56.3 4.7 52 120-171 3-54 (54)
8 3b5n_C Protein transport prote 97.1 0.0018 6E-08 43.3 6.8 58 116-173 11-68 (70)
9 1l4a_C S-SNAP25 fusion protein 96.7 0.00098 3.4E-08 46.0 2.8 56 116-171 26-81 (83)
10 3hd7_A Vesicle-associated memb 96.0 0.059 2E-06 37.5 8.8 71 116-186 4-78 (91)
11 3hd7_B Syntaxin-1A; membrane p 93.3 1.4 4.7E-05 31.4 10.5 56 119-174 23-78 (109)
12 2kog_A Vesicle-associated memb 93.3 0.041 1.4E-06 40.3 2.4 61 114-174 30-90 (119)
13 2l34_A TYRO protein tyrosine k 91.6 0.22 7.4E-06 28.1 3.4 21 180-200 12-32 (33)
14 2iub_A CORA, divalent cation t 87.1 13 0.00044 31.5 14.3 46 27-79 193-238 (363)
15 4ev6_A Magnesium transport pro 86.4 14 0.00046 31.0 18.0 44 28-78 170-213 (339)
16 1gl2_D Syntaxin 8, vesicle tra 78.2 5.4 0.00018 25.3 5.4 53 118-170 10-62 (65)
17 2nps_D Syntaxin-6; vesicle fus 76.3 9.1 0.00031 25.5 6.3 58 117-174 19-76 (82)
18 1n7s_D SNAP-25A; neuronal snar 75.7 9.1 0.00031 24.3 6.0 53 118-170 11-63 (66)
19 4dnd_A Syntaxin-10, SYN10; str 75.7 11 0.00036 27.6 7.0 61 18-78 63-128 (130)
20 2l35_A DAP12-NKG2C_TM; immunor 74.9 3.2 0.00011 26.6 3.4 21 180-200 12-32 (63)
21 2kog_A Vesicle-associated memb 74.4 3.6 0.00012 29.8 4.1 32 165-196 85-116 (119)
22 1sfc_D Protein (SNAP-25B), pro 73.3 7.3 0.00025 26.3 5.3 62 111-172 22-84 (87)
23 3onj_A T-snare VTI1; helix, HA 73.1 12 0.00041 25.8 6.4 51 21-75 40-93 (97)
24 1vcs_A Vesicle transport throu 72.2 7.5 0.00026 27.1 5.2 51 30-80 39-92 (102)
25 4b19_A PEPA1; toxin, toxin apo 71.1 0.73 2.5E-05 25.2 -0.2 18 182-199 8-25 (30)
26 3b5n_D Protein transport prote 70.3 11 0.00036 24.1 5.2 52 118-169 11-62 (64)
27 1l4a_D S-SNAP25 fusion protein 68.7 7.5 0.00026 26.4 4.5 54 118-171 31-84 (87)
28 2ks1_B Epidermal growth factor 67.1 4.2 0.00014 24.2 2.5 12 183-194 19-30 (44)
29 1t3j_A Mitofusin 1; coiled coi 67.1 29 0.00098 24.1 7.6 30 19-48 37-66 (96)
30 2l3l_A Tubulin-specific chaper 66.9 31 0.0011 24.4 7.9 55 20-76 44-105 (111)
31 2l2t_A Receptor tyrosine-prote 65.2 4.9 0.00017 24.0 2.5 10 185-194 20-29 (44)
32 2dnx_A Syntaxin-12; snare, HAB 63.3 34 0.0012 24.7 7.5 62 14-78 6-67 (130)
33 2k1k_A Ephrin type-A receptor 61.2 11 0.00036 21.6 3.4 7 183-189 19-25 (38)
34 2lx0_A Membrane fusion protein 59.8 8.2 0.00028 20.6 2.5 18 181-198 8-25 (32)
35 2c5k_T Syntaxin TLG1, T-snare 52.7 53 0.0018 22.5 6.7 53 22-78 36-91 (95)
36 1fjk_A Cardiac phospholamban; 50.6 20 0.00068 21.4 3.4 24 174-197 26-49 (52)
37 3hd7_A Vesicle-associated memb 50.4 55 0.0019 22.1 9.2 56 125-180 6-64 (91)
38 2qyw_A Vesicle transport throu 49.1 32 0.0011 23.8 5.1 25 18-42 15-39 (102)
39 2nps_B Syntaxin 13, vesicle-as 47.2 53 0.0018 20.9 6.9 33 17-49 1-33 (71)
40 1n7s_D SNAP-25A; neuronal snar 45.4 54 0.0018 20.5 7.6 58 22-84 3-60 (66)
41 2knc_A Integrin alpha-IIB; tra 45.2 17 0.00059 22.5 2.7 13 184-196 19-31 (54)
42 2k9p_A Pheromone alpha factor 44.9 42 0.0014 22.4 4.9 33 166-198 9-41 (80)
43 1use_A VAsp, vasodilator-stimu 43.7 29 0.001 20.6 3.4 25 57-81 9-34 (45)
44 2l8s_A Integrin alpha-1; trans 43.4 19 0.00065 22.3 2.7 14 183-196 15-28 (54)
45 3vkg_A Dynein heavy chain, cyt 42.5 4E+02 0.014 29.7 16.3 23 56-78 2015-2037(3245)
46 1sfc_D Protein (SNAP-25B), pro 42.3 74 0.0025 21.2 8.2 62 20-86 20-81 (87)
47 2k1a_A Integrin alpha-IIB; sin 39.6 25 0.00086 20.5 2.7 14 183-196 16-29 (42)
48 3b5n_D Protein transport prote 38.3 74 0.0025 20.0 7.7 56 22-82 3-58 (64)
49 3hd7_B Syntaxin-1A; membrane p 38.0 99 0.0034 21.4 8.9 58 18-75 17-76 (109)
50 2nps_C Vesicle transport throu 37.9 85 0.0029 20.6 6.6 27 110-136 5-31 (81)
51 2klu_A T-cell surface glycopro 36.5 36 0.0012 22.0 3.3 18 180-197 12-29 (70)
52 4ioe_A Secreted protein ESXB; 34.9 91 0.0031 20.1 9.8 34 16-49 10-43 (93)
53 3gwk_C SAG1039, putative uncha 34.0 98 0.0034 20.2 9.9 25 55-79 62-86 (98)
54 3zbh_A ESXA; unknown function, 33.3 99 0.0034 20.0 8.7 32 17-48 11-42 (99)
55 2l6w_A Beta-type platelet-deri 39.3 9.1 0.00031 22.1 0.0 15 185-199 19-33 (39)
56 2yiu_B Cytochrome C1, heme pro 31.8 31 0.0011 28.3 3.0 18 182-199 232-249 (263)
57 3cx5_D Cytochrome C1, heme pro 30.9 33 0.0011 27.8 3.0 18 182-199 210-227 (248)
58 1yod_A Water-solublized phosph 30.4 66 0.0023 17.1 3.8 23 174-196 5-27 (30)
59 1l4a_D S-SNAP25 fusion protein 30.3 1.2E+02 0.0042 20.1 6.2 59 21-84 22-80 (87)
60 3zbh_A ESXA; unknown function, 30.0 1.1E+02 0.0039 19.7 7.9 29 18-46 19-47 (99)
61 3fav_B ESAT-6, 6 kDa early sec 30.0 1.1E+02 0.0039 19.7 8.4 30 20-49 10-39 (94)
62 1pp9_D Cytochrome C-1, cytochr 29.7 36 0.0012 27.5 3.0 18 182-199 206-223 (241)
63 1m56_D Cytochrome C oxidase; m 29.0 63 0.0022 19.6 3.4 15 184-198 35-49 (51)
64 2jwa_A Receptor tyrosine-prote 28.8 64 0.0022 19.0 3.3 10 180-189 13-22 (44)
65 1qle_D Cytochrome AA3, ccytoch 28.6 58 0.002 19.0 3.0 15 184-198 27-41 (43)
66 1jdm_A Sarcolipin; helix, memb 28.3 50 0.0017 17.7 2.4 17 178-194 7-23 (31)
67 1zrt_D Cytochrome C1; cytochro 27.8 40 0.0014 27.5 3.0 18 182-199 229-246 (258)
68 2w6b_A RHO guanine nucleotide 27.8 1.1E+02 0.0038 18.8 5.7 26 55-80 10-35 (56)
69 3m91_B Prokaryotic ubiquitin-l 27.5 96 0.0033 18.2 3.8 23 18-40 7-29 (44)
70 2qjy_B Cytochrome C1; cytochro 27.0 42 0.0015 27.6 3.0 18 182-199 231-248 (269)
71 1q90_R Cytochrome B6-F complex 26.9 1.1E+02 0.0036 18.4 4.1 13 171-183 9-21 (49)
72 4aj5_A SKA1, spindle and kinet 26.8 1.5E+02 0.0052 20.1 5.5 30 18-47 33-62 (91)
73 4i0x_B ESAT-6-like protein MAB 26.4 1.5E+02 0.005 19.8 7.9 59 20-78 16-76 (103)
74 1gl2_D Syntaxin 8, vesicle tra 26.4 1.2E+02 0.0041 18.7 5.9 55 25-84 5-59 (65)
75 3gwk_C SAG1039, putative uncha 25.0 1.5E+02 0.005 19.3 6.6 30 18-47 11-40 (98)
76 3okq_A BUD site selection prot 24.9 2.1E+02 0.0071 21.1 7.0 59 19-79 15-78 (141)
77 1jth_B Syntaxin 1A; coiled-coi 24.8 1.4E+02 0.0048 19.1 7.5 32 18-49 6-37 (77)
78 4i0x_A ESAT-6-like protein MAB 24.5 1.5E+02 0.0053 19.4 8.5 62 18-80 3-65 (94)
79 2vs0_A Virulence factor ESXA; 23.8 1.5E+02 0.0051 19.0 9.9 31 18-48 9-39 (97)
80 3j1r_A Archaeal adhesion filam 23.6 87 0.003 16.2 3.1 8 192-199 19-26 (26)
81 3fav_A ESAT-6-like protein ESX 22.0 1.8E+02 0.006 19.1 9.1 60 18-78 10-70 (101)
82 3bz1_X Photosystem II PSBX pro 21.9 1.1E+02 0.0036 18.6 3.3 20 179-199 22-41 (50)
83 2zvf_A Alanyl-tRNA synthetase; 21.5 2.4E+02 0.0081 20.5 6.9 58 31-90 9-66 (171)
84 1b9u_A Protein (ATP synthase); 20.7 1.1E+02 0.0037 16.3 3.2 12 183-194 9-20 (34)
85 3oja_A Leucine-rich immune mol 20.4 4E+02 0.014 22.7 8.7 70 21-90 413-484 (487)
86 1gax_A Valrs, valyl-tRNA synth 20.1 2.6E+02 0.0088 26.6 7.4 56 19-78 801-858 (862)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.41 E-value=6.1e-13 Score=92.62 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=67.2
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhch
Q 029054 108 PEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT 179 (200)
Q Consensus 108 ~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~ 179 (200)
+.+.|.+..++|++|.+.+.|++++|.+|+.+|+.||++|.++++++.+++..++.+.++|+.|.||+.+||
T Consensus 10 ~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 10 NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 446888999999999999999999999999999999999999999999999999999999999999998876
No 2
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.20 E-value=1.4e-11 Score=82.20 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=57.1
Q ss_pred HHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHH
Q 029054 111 ALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR 173 (200)
Q Consensus 111 ~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~r 173 (200)
.|.+..++|++|.+.+.|++++|.+|+.+|+.||++|.++++++.+++..+..+.++|+.|.|
T Consensus 3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 456778999999999999999999999999999999999999999999999999999999865
No 3
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=98.80 E-value=2.1e-08 Score=72.52 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=45.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh---hHHHHHHHHHHHHHHHHHHHHHH
Q 029054 15 KVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEM---VSHTLTRHQEILQDLTQEFYRLR 75 (200)
Q Consensus 15 ~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~---~~~~l~r~r~~L~~~~~e~~rl~ 75 (200)
..+++++....+|+..|+++.++|+||+.|+++.|++. +..++..|+..|..++++|++++
T Consensus 31 ~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 31 LPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999998653 23455555555555555554443
No 4
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=98.69 E-value=7.2e-08 Score=69.66 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=48.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 16 VDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 16 ~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
.+++++....+|+..|+|+.++++||+.|+++.|++. ...|...|.+|+.++.+++.++
T Consensus 43 ~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~----R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 43 GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTF----RNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999998753 4566667777777777766543
No 5
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=98.68 E-value=5.2e-08 Score=69.77 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=47.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHHHHHHHHHHH-HHhhHH
Q 029054 14 TKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSG--GSEMVSHTLTRHQEILQDLTQEFYR-LRSSLK 79 (200)
Q Consensus 14 ~~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~--~~~~~~~~l~r~r~~L~~~~~e~~r-l~~~~~ 79 (200)
..+|++++....+|+..++++.++++||++|+++. ||+. ...|...|.+|+.++.+ ++..++
T Consensus 26 ~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~----R~~~~~klr~Yk~dl~~~lk~~lk 90 (97)
T 3onj_A 26 SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASE----RATYKAKLREWKKTIQSDIKRPLQ 90 (97)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999 8643 34555555555555555 555443
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=98.64 E-value=1.1e-07 Score=65.64 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=59.1
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHH
Q 029054 110 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 172 (200)
Q Consensus 110 ~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~ 172 (200)
+.+-+..+++++|.+++.++.++|.+|+.+|+.||++|.+++++|.++++.+..+.++|+.|.
T Consensus 16 ~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 16 QLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 345577789999999999999999999999999999999999999999999999999999886
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=98.27 E-value=1e-06 Score=56.26 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=48.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHH
Q 029054 120 NRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 171 (200)
Q Consensus 120 ~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I 171 (200)
++|.+.+.++.+.|..|+..|..||++|.++.+.|.++++.+..+.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999988753
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.11 E-value=0.0018 Score=43.29 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=52.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHH
Q 029054 116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR 173 (200)
Q Consensus 116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~r 173 (200)
-++-+++.+++.+..+.|..|+..|..|++.|.++...|..++..+..+..-+..|+.
T Consensus 11 l~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 11 VASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566788899999999999999999999999999999999999999999888887764
No 9
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.67 E-value=0.00098 Score=46.00 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=47.9
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHH
Q 029054 116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 171 (200)
Q Consensus 116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I 171 (200)
-++-+++.+++.+..+.|..|+..|..|++.|.++...|-.+++.+..+.+.|+.|
T Consensus 26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L 81 (83)
T 1l4a_C 26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35777888889999999999999999999999999999999998887776665544
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=95.96 E-value=0.059 Score=37.51 Aligned_cols=71 Identities=10% Similarity=0.211 Sum_probs=41.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCCh----HHHHHHHHHHhhhhchHHHHHHH
Q 029054 116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPS----VNQILSSIKRKKSMDTIILALVA 186 (200)
Q Consensus 116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~----s~~~l~~I~rR~~~d~~Il~~vi 186 (200)
+++|...+..+||+-++-..-.+.+-+..+.|....+|-.+....-.. +.++=+.|-.+..+=++|+++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv 78 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVIC 78 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777666665554443222 22333444444555455555544
No 11
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=93.32 E-value=1.4 Score=31.39 Aligned_cols=56 Identities=5% Similarity=-0.060 Sum_probs=40.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHh
Q 029054 119 INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 174 (200)
Q Consensus 119 L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR 174 (200)
+.+=.+.+.++-++-...-.-..+|.+.+.++..-+.++..++...+.=+.+-.+.
T Consensus 23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~y 78 (109)
T 3hd7_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555678999999999999999999999998777655433
No 12
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=93.31 E-value=0.041 Score=40.28 Aligned_cols=61 Identities=10% Similarity=0.272 Sum_probs=43.4
Q ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHh
Q 029054 114 KEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 174 (200)
Q Consensus 114 ~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR 174 (200)
.+.++|...+..+||+-++-..-.+.+-+..+.|....+|=.++...-..-.+.-+.+.++
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rk 90 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 90 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888999999999899899999888888887776655554444444444444444
No 13
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=91.56 E-value=0.22 Score=28.10 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 029054 180 IILALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~~K 200 (200)
++++.++++.++.+++|||+|
T Consensus 12 IVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 12 IVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred EeHHHHHHHHHHHHHHhheec
Confidence 466777778888888999886
No 14
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=87.07 E-value=13 Score=31.48 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 27 IDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 27 Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
.-..++++++-++.++..+...|.... -..+..++++.-.++..+.
T Consensus 193 y~~~l~~l~~~id~lE~~v~~~~~~~~-------l~~l~~lrr~l~~lrr~l~ 238 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEVLERPEKET-------VQRTHQLKRNLVELRKTIW 238 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHHHHHHHHHHH
Confidence 334466666667777777665543322 2235555555555555443
No 15
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=86.39 E-value=14 Score=31.01 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 28 DWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 28 e~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
...++++++-++.++..+...+....... +..++++.-.++..+
T Consensus 170 ~~~l~~l~~~i~~lE~~l~~~~~~~~l~~-------l~~lrr~l~~lrr~l 213 (339)
T 4ev6_A 170 SRILMNLEDELEELEDKLLAGYDREVMEK-------ILGLRKTLVYFHKSL 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCCHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHH-------HHHHHHHHHHHHHHh
Confidence 44455555666666666655444332233 444455555554444
No 16
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=78.24 E-value=5.4 Score=25.33 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=41.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHH
Q 029054 118 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 170 (200)
Q Consensus 118 ~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~ 170 (200)
.|+.=+..+..+=++|..|-+++..|...|......+-.+...+...++=+..
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667777778999999999999999999999988887776665554433
No 17
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=76.28 E-value=9.1 Score=25.51 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=49.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHh
Q 029054 117 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 174 (200)
Q Consensus 117 ~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR 174 (200)
+.|+.=+..+..+=++|..|-++|..|...|......+-.+...|...++=+..+.++
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777778888899999999999999999999999999998888877777766654
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=75.74 E-value=9.1 Score=24.28 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHH
Q 029054 118 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 170 (200)
Q Consensus 118 ~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~ 170 (200)
.|+.=...+..+=++|..+-.+|..|...|..+..++-.+...+...++=+.+
T Consensus 11 ~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 11 NLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555566666778899999999999999999999998888877776654443
No 19
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=75.69 E-value=11 Score=27.65 Aligned_cols=61 Identities=3% Similarity=0.054 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--Cchhh---HHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSG--GSEMV---SHTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~--~~~~~---~~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
++-..+..++...|..+..-++.++.-|.-. .|.+. ...+.+.|..+.+.+.+.+.++..+
T Consensus 63 ~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666777777777777777666555422 12111 1346777777777777777776543
No 20
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=74.91 E-value=3.2 Score=26.64 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 029054 180 IILALVASVCTFLIFIYWVTK 200 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~~~K 200 (200)
+|++-+++++++.+..|+|+|
T Consensus 12 IIv~DIi~TllLal~VY~~A~ 32 (63)
T 2l35_A 12 IVVGDLVLTVLIALAVYFLGR 32 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhhcc
Confidence 567778888888889999876
No 21
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=74.36 E-value=3.6 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 029054 165 NQILSSIKRKKSMDTIILALVASVCTFLIFIY 196 (200)
Q Consensus 165 ~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~ 196 (200)
.++-+++-.+..+=.+|+++++++++++|+++
T Consensus 85 ~kl~rkmwwkn~K~~iii~~iv~iii~iIi~~ 116 (119)
T 2kog_A 85 AKLKRKYWWKNLKMMIILGVICAIILIIIIVY 116 (119)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33455666777766777766554444444433
No 22
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=73.28 E-value=7.3 Score=26.35 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=48.5
Q ss_pred HHHHHh-HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHH
Q 029054 111 ALLKEH-ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 172 (200)
Q Consensus 111 ~ll~e~-~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~ 172 (200)
.+.+|. +.|+.=...+..+=.+|..+-.+|..|...|..+..++-.+...+...++=+..+.
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 344443 35677777777888899999999999999999999999988888877776555543
No 23
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=73.08 E-value=12 Score=25.79 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhcCCchhhHHHHHHHHHHHHH-HHHHHHHHH
Q 029054 21 NDLESGIDWLLKQLQQVNIQM--QDWVSSGGSEMVSHTLTRHQEILQD-LTQEFYRLR 75 (200)
Q Consensus 21 ~~~~~~Ie~~l~e~~~~~~~m--~~~v~~~~~~~~~~~l~r~r~~L~~-~~~e~~rl~ 75 (200)
.....+.+.+|++++--+..+ ..-. .+.+..++..|+..|.. ++++++++.
T Consensus 40 e~~ldEA~ell~qMelE~~~~~~p~~~----R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 40 EQQQDELFDLLDQMDVEVNNSIGDASE----RATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555544444 2212 34555677777777777 777777764
No 24
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=72.23 E-value=7.5 Score=27.13 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 029054 30 LLKQLQQVNIQMQDWVSSGGS---EMVSHTLTRHQEILQDLTQEFYRLRSSLKA 80 (200)
Q Consensus 30 ~l~e~~~~~~~m~~~v~~~~~---~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~ 80 (200)
.+.+++.-+++.+.++....- ..-......|...|.+|+.|+.+++..++.
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544331 111246788999999999999999887754
No 25
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=71.13 E-value=0.73 Score=25.22 Aligned_cols=18 Identities=39% Similarity=0.885 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029054 182 LALVASVCTFLIFIYWVT 199 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~~ 199 (200)
++-+|+.|++-++-||++
T Consensus 8 ia~visGcivalF~hWL~ 25 (30)
T 4b19_A 8 IAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778899999999985
No 26
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=70.29 E-value=11 Score=24.14 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=40.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHH
Q 029054 118 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS 169 (200)
Q Consensus 118 ~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~ 169 (200)
.|..-..++-.+=.+|.++-.++..|...|.++..+.-.++..+...+.=|.
T Consensus 11 nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 11 NLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666667899999999999999999999999888877766554433
No 27
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=68.70 E-value=7.5 Score=26.38 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=45.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHH
Q 029054 118 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 171 (200)
Q Consensus 118 ~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I 171 (200)
.|+.=...+..+=++|..+-.+|..|...|.++..++-.+...+...++=++.+
T Consensus 31 ~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 31 NMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777789999999999999999999999999999888887666544
No 28
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=67.12 E-value=4.2 Score=24.22 Aligned_cols=12 Identities=0% Similarity=-0.147 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 029054 183 ALVASVCTFLIF 194 (200)
Q Consensus 183 ~~vi~~~i~~~~ 194 (200)
+|+.++++++++
T Consensus 19 gGv~~~~ii~~~ 30 (44)
T 2ks1_B 19 GALLLLLVVALG 30 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 29
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=67.11 E-value=29 Score=24.09 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029054 19 AENDLESGIDWLLKQLQQVNIQMQDWVSSG 48 (200)
Q Consensus 19 ~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~ 48 (200)
-...+...++....++.+=+++|+.++...
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQL 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666555443
No 30
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=66.94 E-value=31 Score=24.42 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=35.3
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHhhcCCc--hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 029054 20 ENDLESGIDW-----LLKQLQQVNIQMQDWVSSGGS--EMVSHTLTRHQEILQDLTQEFYRLRS 76 (200)
Q Consensus 20 ~~~~~~~Ie~-----~l~e~~~~~~~m~~~v~~~~~--~~~~~~l~r~r~~L~~~~~e~~rl~~ 76 (200)
+..++..|+. .++++..-|..|+.+|..... |+ +.+..|.+.+..++..+..+++
T Consensus 44 ~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~--YD~R~~q~~i~~L~~~l~e~r~ 105 (111)
T 2l3l_A 44 RAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAA--YDLRQGQEALARLQAALAERRR 105 (111)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443 377777888888888877641 22 5777777777777755554443
No 31
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.21 E-value=4.9 Score=23.96 Aligned_cols=10 Identities=0% Similarity=-0.157 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 029054 185 VASVCTFLIF 194 (200)
Q Consensus 185 vi~~~i~~~~ 194 (200)
+.++++++++
T Consensus 20 v~~v~ii~~~ 29 (44)
T 2l2t_A 20 LFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 32
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.34 E-value=34 Score=24.69 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=45.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 14 TKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 14 ~~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
+...++-..+...|...|-++...+.+|+..+...+++. .....|+.+++.......+-...
T Consensus 6 ~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~k---Dt~~LR~kl~~~~~~t~~l~k~t 67 (130)
T 2dnx_A 6 SGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQ---DSSKLQENLQQLQHSTNQLAKET 67 (130)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888999999999999999999999998887532 24555666666665555554433
No 33
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=61.16 E-value=11 Score=21.64 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 029054 183 ALVASVC 189 (200)
Q Consensus 183 ~~vi~~~ 189 (200)
+.+++++
T Consensus 19 G~v~gv~ 25 (38)
T 2k1k_A 19 GLLLGAA 25 (38)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 34
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=59.80 E-value=8.2 Score=20.59 Aligned_cols=18 Identities=33% Similarity=0.805 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029054 181 ILALVASVCTFLIFIYWV 198 (200)
Q Consensus 181 Il~~vi~~~i~~~~~~~~ 198 (200)
+++|+++++.++.+-+|+
T Consensus 8 viaglvalltflafgfwl 25 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666665555544
No 35
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=52.71 E-value=53 Score=22.48 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---CCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 22 DLESGIDWLLKQLQQVNIQMQDWVSS---GGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 22 ~~~~~Ie~~l~e~~~~~~~m~~~v~~---~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
....+++..++++.+.++.++.-+.- .++. .+++=+..+.+++.++..++..+
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~----EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENE----DVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555544433322 1211 12333334666666666666554
No 36
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=50.59 E-value=20 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.114 Sum_probs=14.0
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHH
Q 029054 174 KKSMDTIILALVASVCTFLIFIYW 197 (200)
Q Consensus 174 R~~~d~~Il~~vi~~~i~~~~~~~ 197 (200)
+..++-++=.+.|.+|++++.++.
T Consensus 26 qnlqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 26 QNLQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555667777777765543
No 37
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=50.38 E-value=55 Score=22.06 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhc---cCChHHHHHHHHHHhhhhchH
Q 029054 125 QMDSVISQAQATLGALVFQRSTFGGINSKLSNVSS---RLPSVNQILSSIKRKKSMDTI 180 (200)
Q Consensus 125 ~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~---~l~~s~~~l~~I~rR~~~d~~ 180 (200)
.+..+-++-.++..-+...=+.+-.-..||..+.+ .+......-.+=.++.++.-|
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmw 64 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 64 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544444444555554443 333333444444444444433
No 38
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=49.11 E-value=32 Score=23.78 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQ 42 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~ 42 (200)
+--...+.+...+..++...|+++.
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~ 39 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLL 39 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556667777777777777777653
No 39
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=47.19 E-value=53 Score=20.91 Aligned_cols=33 Identities=6% Similarity=0.085 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 029054 17 DAAENDLESGIDWLLKQLQQVNIQMQDWVSSGG 49 (200)
Q Consensus 17 ~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~ 49 (200)
|.++..-...|+..+.++.++..+|...|..-+
T Consensus 1 ~~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQg 33 (71)
T 2nps_B 1 GSMRETAIQQLEADILDVNQIFKDLAMMIHDQG 33 (71)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356788889999999999999999999996654
No 40
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=45.40 E-value=54 Score=20.48 Aligned_cols=58 Identities=9% Similarity=0.152 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 029054 22 DLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEH 84 (200)
Q Consensus 22 ~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R 84 (200)
.++.+.+..|+++...+..+-......+ ..+..+...|.++...+.+....+.....|
T Consensus 3 ~~e~eqD~~Ld~L~~~v~~lk~la~~ig-----~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~r 60 (66)
T 1n7s_D 3 ARENEMDENLEQVSGIIGNLRHMALDMG-----NEIDTQNRQIDRIMEKADSNKTRIDEANQR 60 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3577888888888888888776654433 346777777888888888887777665444
No 41
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.18 E-value=17 Score=22.50 Aligned_cols=13 Identities=8% Similarity=0.342 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 029054 184 LVASVCTFLIFIY 196 (200)
Q Consensus 184 ~vi~~~i~~~~~~ 196 (200)
.+.+++++.+++|
T Consensus 19 vl~GLllL~li~~ 31 (54)
T 2knc_A 19 VLGGLLLLTILVL 31 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333443333333
No 42
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=44.93 E-value=42 Score=22.36 Aligned_cols=33 Identities=9% Similarity=0.404 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 029054 166 QILSSIKRKKSMDTIILALVASVCTFLIFIYWV 198 (200)
Q Consensus 166 ~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~ 198 (200)
..+...-....|..+++|+-+|.|++++++.|+
T Consensus 9 ~~ld~~~~~~~~~~I~~G~~iGAs~llliil~l 41 (80)
T 2k9p_A 9 DELQGLVNSTVTQAILFGVRSGAAALTLIVVWI 41 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777788888777777777655544
No 43
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=43.66 E-value=29 Score=20.61 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=18.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhHHhH
Q 029054 57 LTRH-QEILQDLTQEFYRLRSSLKAK 81 (200)
Q Consensus 57 l~r~-r~~L~~~~~e~~rl~~~~~~~ 81 (200)
+.++ +++|.++++|+++.|..+-.+
T Consensus 9 le~~KqEIL~E~RkElqK~K~EIIeA 34 (45)
T 1use_A 9 LQRVKQELLEEVKKELQKVKEEIIEA 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 367899999999999887543
No 44
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=43.42 E-value=19 Score=22.30 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 029054 183 ALVASVCTFLIFIY 196 (200)
Q Consensus 183 ~~vi~~~i~~~~~~ 196 (200)
+.+.+++++.+++|
T Consensus 15 svl~GLLLL~Lii~ 28 (54)
T 2l8s_A 15 SAFAGLLLLMLLIL 28 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 45
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.47 E-value=4e+02 Score=29.65 Aligned_cols=23 Identities=4% Similarity=0.149 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 029054 56 TLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 56 ~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
.++...+.|...+.+++..+..+
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L 2037 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATI 2037 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 46
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.27 E-value=74 Score=21.17 Aligned_cols=62 Identities=8% Similarity=0.146 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 029054 20 ENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHAS 86 (200)
Q Consensus 20 ~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~ 86 (200)
....+.+.+..|+++...+..+...+-.. ...+..+...|..+..++.+....+.....|..
T Consensus 20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~i-----g~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~ 81 (87)
T 1sfc_D 20 NDARENEMDENLEQVSGIIGNLRHMALDM-----GNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988887665443 335788888899998888888887776655544
No 47
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=39.63 E-value=25 Score=20.55 Aligned_cols=14 Identities=7% Similarity=0.330 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 029054 183 ALVASVCTFLIFIY 196 (200)
Q Consensus 183 ~~vi~~~i~~~~~~ 196 (200)
+.+.+++++.+++|
T Consensus 16 s~l~GLllL~li~~ 29 (42)
T 2k1a_A 16 GVLGGLLLLTILVL 29 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 48
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=38.35 E-value=74 Score=20.04 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 029054 22 DLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82 (200)
Q Consensus 22 ~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~ 82 (200)
..+.+++..|+++..++..+...+...+ ..+..+...|......-.+....+..+.
T Consensus 3 ~~E~e~D~nLd~l~~~~~rlk~ma~~mg-----~Eid~QN~~ldrI~~k~d~~d~ri~~~~ 58 (64)
T 3b5n_D 3 EMELEIDRNLDQIQQVSNRLKKMALTTG-----KELDSQQKRLNNIEESTDDLDINLHMNT 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999988887664443 2355555556655555555554444433
No 49
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=37.99 E-value=99 Score=21.42 Aligned_cols=58 Identities=9% Similarity=0.152 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGS--EMVSHTLTRHQEILQDLTQEFYRLR 75 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~--~~~~~~l~r~r~~L~~~~~e~~rl~ 75 (200)
+++..-..+|+..+.++.++-.+|...|..-+. ......+..-.+.+..-..++++..
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778889999999999999999998866442 2222233333334444444444443
No 50
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=37.92 E-value=85 Score=20.64 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=15.4
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHH
Q 029054 110 QALLKEHASINRSTGQMDSVISQAQAT 136 (200)
Q Consensus 110 ~~ll~e~~~L~~S~~~~d~~l~~g~~~ 136 (200)
++||..+++|++|...+.+...++.++
T Consensus 5 ~~Ll~~t~~L~rt~~~L~~s~r~~~ET 31 (81)
T 2nps_C 5 AHLLDNTERLERSSRRLEAGYQIAVET 31 (81)
T ss_dssp THHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666665555555555554
No 51
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=36.52 E-value=36 Score=22.00 Aligned_cols=18 Identities=28% Similarity=0.336 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029054 180 IILALVASVCTFLIFIYW 197 (200)
Q Consensus 180 ~Il~~vi~~~i~~~~~~~ 197 (200)
+++||++++++|+-++++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 356666655555444443
No 52
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=34.95 E-value=91 Score=20.08 Aligned_cols=34 Identities=6% Similarity=-0.063 Sum_probs=26.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 029054 16 VDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGG 49 (200)
Q Consensus 16 ~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~ 49 (200)
..++-.....++...-+++.+.+..|...+....
T Consensus 10 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~ 43 (93)
T 4ioe_A 10 TPEELERIAGNFKNAAGEAQSQINRLEGDINSLE 43 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888888888888888888888887764
No 53
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=34.01 E-value=98 Score=20.21 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 55 HTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 55 ~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
..+.++.+.|.++...+++....++
T Consensus 62 ~~~~~~~~~L~~i~~~L~~~a~~~~ 86 (98)
T 3gwk_C 62 PKITEFAQLLEDINQQLLKVADIIE 86 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555443
No 54
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=33.30 E-value=99 Score=20.02 Aligned_cols=32 Identities=0% Similarity=-0.049 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029054 17 DAAENDLESGIDWLLKQLQQVNIQMQDWVSSG 48 (200)
Q Consensus 17 ~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~ 48 (200)
.++-......+...-+++.+.+.+|...+...
T Consensus 11 ~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 11 PEELRGVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666777666666666554
No 55
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=39.32 E-value=9.1 Score=22.11 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 029054 185 VASVCTFLIFIYWVT 199 (200)
Q Consensus 185 vi~~~i~~~~~~~~~ 199 (200)
+|.++.+++++|.|.
T Consensus 19 vi~iisLIiLi~~w~ 33 (39)
T 2l6w_A 19 VLTIISLIILIMLWQ 33 (39)
Confidence 343444444555553
No 56
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=31.83 E-value=31 Score=28.27 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029054 182 LALVASVCTFLIFIYWVT 199 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~~ 199 (200)
+.+++.+++++++.|+++
T Consensus 232 ~~vl~fL~il~~l~y~~k 249 (263)
T 2yiu_B 232 FVSVIFLIVLAALLYLTN 249 (263)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555666554
No 57
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=30.88 E-value=33 Score=27.85 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029054 182 LALVASVCTFLIFIYWVT 199 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~~ 199 (200)
+.+++.+++++++.|+++
T Consensus 210 ~~vl~fL~il~~l~y~~k 227 (248)
T 3cx5_D 210 LKTVIILSSLYLLSIWVK 227 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555556554
No 58
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=30.36 E-value=66 Score=17.09 Aligned_cols=23 Identities=17% Similarity=0.155 Sum_probs=14.0
Q ss_pred hhhhchHHHHHHHHHHHHHHHHH
Q 029054 174 KKSMDTIILALVASVCTFLIFIY 196 (200)
Q Consensus 174 R~~~d~~Il~~vi~~~i~~~~~~ 196 (200)
+..++-++=.+.|.+|++++.+.
T Consensus 5 qNlQ~LfvNfcLilICllLi~Ii 27 (30)
T 1yod_A 5 QNLQNLYINRCLREICQELKEIR 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556566777777776544
No 59
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=30.26 E-value=1.2e+02 Score=20.14 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 029054 21 NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEH 84 (200)
Q Consensus 21 ~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R 84 (200)
...+.+++..|+++...+..+-..+...+ ..+.+....|..+.....++...+...-.|
T Consensus 22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg-----~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r 80 (87)
T 1l4a_D 22 DAREDDMENNMKEVSSMIGNLRNMAIDMG-----NEIGSQNRQVDRIQQKAESNESRIDEANKK 80 (87)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999888887664443 357777778888887777777666554444
No 60
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=30.02 E-value=1.1e+02 Score=19.70 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVS 46 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~ 46 (200)
..-.....+|+..+..+...++.|...-.
T Consensus 19 ~~~~~~~~~i~~~l~~L~~~v~~L~~~W~ 47 (99)
T 3zbh_A 19 RQYNVESSNVTELIARLDQMSHTLQGIWE 47 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566778888999999988888875443
No 61
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=29.95 E-value=1.1e+02 Score=19.69 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 029054 20 ENDLESGIDWLLKQLQQVNIQMQDWVSSGG 49 (200)
Q Consensus 20 ~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~ 49 (200)
-.....+|...-.+++..+++|...+....
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~ 39 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTKLA 39 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777666653
No 62
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=29.68 E-value=36 Score=27.51 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029054 182 LALVASVCTFLIFIYWVT 199 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~~ 199 (200)
+.+++.+++++++.|+++
T Consensus 206 ~~vl~fL~il~~l~y~~k 223 (241)
T 1pp9_D 206 LKMLLMMGLLLPLVYAMK 223 (241)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555666554
No 63
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=29.00 E-value=63 Score=19.61 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 184 LVASVCTFLIFIYWV 198 (200)
Q Consensus 184 ~vi~~~i~~~~~~~~ 198 (200)
+.+++.++++++.+|
T Consensus 35 gt~~~~~~ll~laif 49 (51)
T 1m56_D 35 AAVVIVAALIFLALA 49 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 64
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.78 E-value=64 Score=18.99 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 029054 180 IILALVASVC 189 (200)
Q Consensus 180 ~Il~~vi~~~ 189 (200)
.|.++|++++
T Consensus 13 ~Ia~~vVGvl 22 (44)
T 2jwa_A 13 SIISAVVGIL 22 (44)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 3555555543
No 65
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=28.59 E-value=58 Score=19.03 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029054 184 LVASVCTFLIFIYWV 198 (200)
Q Consensus 184 ~vi~~~i~~~~~~~~ 198 (200)
+.++++++++++.+|
T Consensus 27 gt~~~~~~ll~maif 41 (43)
T 1qle_D 27 VSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 66
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.31 E-value=50 Score=17.70 Aligned_cols=17 Identities=6% Similarity=0.264 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHHHHHH
Q 029054 178 DTIILALVASVCTFLIF 194 (200)
Q Consensus 178 d~~Il~~vi~~~i~~~~ 194 (200)
.-++=..+|.+|++++.
T Consensus 7 ELf~NFt~vLI~vlLi~ 23 (31)
T 1jdm_A 7 ELFLNFTIVLITVILMW 23 (31)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33443455555655543
No 67
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=27.84 E-value=40 Score=27.52 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029054 182 LALVASVCTFLIFIYWVT 199 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~~ 199 (200)
+.+++.+++++++.|+++
T Consensus 229 ~~vl~fL~il~~l~y~~k 246 (258)
T 1zrt_D 229 LVAMVMLGLLSVMLYLTN 246 (258)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555666554
No 68
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.84 E-value=1.1e+02 Score=18.84 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHh
Q 029054 55 HTLTRHQEILQDLTQEFYRLRSSLKA 80 (200)
Q Consensus 55 ~~l~r~r~~L~~~~~e~~rl~~~~~~ 80 (200)
-++=..++.+.++++|+++++..+.+
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556778888999999998887754
No 69
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=27.48 E-value=96 Score=18.19 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQ 40 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~ 40 (200)
+..+....+++.+|++++++++.
T Consensus 7 ~~~~~~~~~~D~lLDeId~vLE~ 29 (44)
T 3m91_B 7 ERREKLTEETDDLLDEIDDVLEE 29 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Confidence 34555667777778777777764
No 70
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=27.02 E-value=42 Score=27.57 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029054 182 LALVASVCTFLIFIYWVT 199 (200)
Q Consensus 182 l~~vi~~~i~~~~~~~~~ 199 (200)
+.+++.+++++++.|+++
T Consensus 231 ~~Vl~fL~il~~l~y~~k 248 (269)
T 2qjy_B 231 FTAVMFLTVLSVLLYLTN 248 (269)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555666554
No 71
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=26.86 E-value=1.1e+02 Score=18.40 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=11.2
Q ss_pred HHHhhhhchHHHH
Q 029054 171 IKRKKSMDTIILA 183 (200)
Q Consensus 171 I~rR~~~d~~Il~ 183 (200)
|+||..-+.+.++
T Consensus 9 m~RRqfln~l~~G 21 (49)
T 1q90_R 9 MNKRNIMNLILAG 21 (49)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7899999998875
No 72
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=26.81 E-value=1.5e+02 Score=20.13 Aligned_cols=30 Identities=3% Similarity=-0.072 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSS 47 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~ 47 (200)
+..+.+-..|...+--+.+++++|+.+|..
T Consensus 33 P~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~ 62 (91)
T 4aj5_A 33 PTLKTVLNKIGDEIIVINELLNKLELEIQY 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777643
No 73
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.40 E-value=1.5e+02 Score=19.81 Aligned_cols=59 Identities=7% Similarity=-0.074 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh-hH-HHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 20 ENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEM-VS-HTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 20 ~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~-~~-~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
-.....+|...-.++++.+++|+..+......- +. ..-..|.+...+.....+++...+
T Consensus 16 l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L 76 (103)
T 4i0x_B 16 IEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGL 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554443332110 10 123444444555555555554443
No 74
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.36 E-value=1.2e+02 Score=18.73 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 029054 25 SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEH 84 (200)
Q Consensus 25 ~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R 84 (200)
.+.+..|+.+...+..+-...... ...+..+...|.++..++.+....+.....|
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~I-----g~El~~Qn~lLd~l~~~~d~~~~~l~~~~~r 59 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEI-----GNELDEQNEIIDDLANLVENTDEKLRTEARR 59 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443322 2346677777888888888887777665554
No 75
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.02 E-value=1.5e+02 Score=19.30 Aligned_cols=30 Identities=7% Similarity=-0.153 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSS 47 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~ 47 (200)
++-......+...-+++.+.+..|...+..
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~ 40 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAV 40 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544444
No 76
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=24.91 E-value=2.1e+02 Score=21.08 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHhh--cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054 19 AENDLESGIDWLLKQLQQV---NIQMQDWVS--SGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK 79 (200)
Q Consensus 19 ~~~~~~~~Ie~~l~e~~~~---~~~m~~~v~--~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~ 79 (200)
-+..+..+.+.++.+.+++ ++.|..-|. +.-|.. .++......+...+.+++.++..+.
T Consensus 15 ~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~--~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 15 SQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAK--KKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766654 444444342 232322 2466666667777777777666553
No 77
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=24.79 E-value=1.4e+02 Score=19.08 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSGG 49 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~ 49 (200)
.++..-...|+..+.++.++-.+|...|..-+
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQg 37 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQG 37 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777889999999999999999999996654
No 78
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=24.45 E-value=1.5e+02 Score=19.37 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH-HHHHHHHHHHHHHHHHHHHHHhhHHh
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVS-HTLTRHQEILQDLTQEFYRLRSSLKA 80 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~-~~l~r~r~~L~~~~~e~~rl~~~~~~ 80 (200)
++-......+...-+++.+.++.|...+...... +. ..-..|.+...++...++++...+..
T Consensus 3 eel~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~-W~G~Aa~af~~~~~~w~~~a~~l~~~L~~ 65 (94)
T 4i0x_A 3 DEVGALSKFAASLADQMRAGSNSLDRDVQSLFGV-WKGSAADAYRSGWDEMQDGATKVWNALTD 65 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888777521 21 23456777777777777777666544
No 79
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.79 E-value=1.5e+02 Score=18.99 Aligned_cols=31 Identities=6% Similarity=-0.114 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSG 48 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~ 48 (200)
++-.....++...-.++.+.+++|...+...
T Consensus 9 ~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 9 EEIRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666555543
No 80
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=23.63 E-value=87 Score=16.21 Aligned_cols=8 Identities=25% Similarity=0.962 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 029054 192 LIFIYWVT 199 (200)
Q Consensus 192 ~~~~~~~~ 199 (200)
.+++.||+
T Consensus 19 VllylW~s 26 (26)
T 3j1r_A 19 VLLYTWVS 26 (26)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 33444553
No 81
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=22.00 E-value=1.8e+02 Score=19.13 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH-HHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVS-HTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~-~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
+.-.....+|+..-.+++..+++|+..+...... +. ..-..|.....++...+.++...+
T Consensus 10 ~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~-W~G~A~~af~~~~~~w~~~~~~l~~~L 70 (101)
T 3fav_A 10 ATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQ-WRGAAGTAAQAAVVRFQEAANKQKQEL 70 (101)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666788888888999999999888777531 11 123455555666665555555444
No 82
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=21.90 E-value=1.1e+02 Score=18.56 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029054 179 TIILALVASVCTFLIFIYWVT 199 (200)
Q Consensus 179 ~~Il~~vi~~~i~~~~~~~~~ 199 (200)
.++.|++|.+. +...++++|
T Consensus 22 SlvaG~vVvv~-i~~aLi~VS 41 (50)
T 3bz1_X 22 GLLSGAVVLGL-TFAVLIAIS 41 (50)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHheeee
Confidence 35566665554 444444443
No 83
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.47 E-value=2.4e+02 Score=20.48 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcc
Q 029054 31 LKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLED 90 (200)
Q Consensus 31 l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~ 90 (200)
+.+..+++.++...+.. |++.+..++.+..+.+.+++++.++++..+-... =.+|+..
T Consensus 9 ~~~~~~~l~~~a~~Lk~-~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~-~~~l~~~ 66 (171)
T 2zvf_A 9 VEEMERLLREASSILRV-EPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW-ADILMER 66 (171)
T ss_dssp HHHHHHHHHHHHHTTTC-CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 33445555555555533 3345556889999999999999999887754432 2345543
No 84
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.71 E-value=1.1e+02 Score=16.28 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 029054 183 ALVASVCTFLIF 194 (200)
Q Consensus 183 ~~vi~~~i~~~~ 194 (200)
+.+|.+++++++
T Consensus 9 ~~~i~Flil~~~ 20 (34)
T 1b9u_A 9 GQAIAFVLFVLF 20 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.41 E-value=4e+02 Score=22.70 Aligned_cols=70 Identities=7% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcc
Q 029054 21 NDLESGIDWLLKQLQQVNIQMQDWVSSGG--SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLED 90 (200)
Q Consensus 21 ~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~--~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~ 90 (200)
.......+....+.+...++|........ -..+...-+|.+..+.++..+....+..++.+..|++-|..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
No 86
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=20.14 E-value=2.6e+02 Score=26.59 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054 19 AENDLESGIDWLLKQLQQVNIQMQDW--VSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 78 (200)
Q Consensus 19 ~~~~~~~~Ie~~l~e~~~~~~~m~~~--v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~ 78 (200)
+...+.++++..-.++..+-..|..+ +.+.|+. .+..-|+.+.+++.+..+++..+
T Consensus 801 ~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~----~~~~~~~~~~~~~~~~~~~~~~~ 858 (862)
T 1gax_A 801 WRRRQEKRLKELLALAERSQRKLASPGFREKAPKE----VVEAEEARLKENLEQAERIREAL 858 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTT----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444444444432 3334443 47778888999998888887654
Done!