BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029055
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1
SV=1
Length = 226
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 63 TPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHN 122
TPEEQ I+ +L AK+ NR++KIAK L +T D ++ W T+ + ++ +
Sbjct: 79 TPEEQLIIMELHAKWG-----NRWSKIAKHLPGRT--DNEIKNFWRTRIQKYIKQSDVTT 131
Query: 123 SARKNKDRKEKATDSSAKSSSH 144
++ + D +A +SSH
Sbjct: 132 TSSVGSHHSSEINDQAASTSSH 153
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 62 WTPEEQSILEDLLAKYASDSAVN-RYAKIAKQLKDKTVRDVALR 104
WT EEQ LE LL KY + + R+ KIA +L ++T + VA R
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASR 698
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 62 WTPEEQSILEDLLAKYASDSAVN-RYAKIAKQLKDKTVRDVALR 104
WT EEQ LE LL KY + + R+ KIA +L ++T + VA R
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASR 705
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL--------RCRWMTK 110
S +WT EE+ + E LAK+ R+ KIA LK +TV V + +W +
Sbjct: 115 SVKWTVEEKELFEQGLAKFG-----RRWTKIATLLKSRTVLQVKSYARQYFKNKVKWDVE 169
Query: 111 KENGKRRKEDHNSARKNKDRKEKA 134
KE +K + KNKD + KA
Sbjct: 170 KETPT-QKSSSDLQVKNKDDRTKA 192
>sp|O52200|PRIM_MYCS2 DNA primase OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=dnaG PE=3 SV=1
Length = 636
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 63 TPEEQSILEDLLAKYASDSAVNRYAKIAK------QLKDKTVRDVALR--CRWM----TK 110
TP + ++ LA++ DSA R A + + ++KD T+RD R W+
Sbjct: 377 TPLFEFVIRSALAEHDLDSAEGRVAALRRCVPMLARIKDPTLRDEYARQLAGWVGWDNVA 436
Query: 111 KENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYR 170
+ G+ R+E RK+ +R+ + T + K P P+ P + G+ Y
Sbjct: 437 QVIGRVREEAKGGGRKDNNRRGQETAARPKPPPVQRPDPTDPTLWPQREALKA--GLQYP 494
Query: 171 AIGGITGDIL 180
A+ G D L
Sbjct: 495 ALAGPVFDTL 504
>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1
Length = 205
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 63 TPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110
TPEEQ ++ +L AK+ NR++KIAK L +T D ++ W T+
Sbjct: 72 TPEEQLLIMELHAKWG-----NRWSKIAKTLPGRT--DNEIKNYWRTR 112
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK---KENGK 115
S +WT EE+ + E L KY R+ KIAK + +TV V R K K +G
Sbjct: 119 SLKWTSEEKELFEQGLVKYG-----RRWTKIAKLIGSRTVLQVKSYARQYFKNKAKNDGS 173
Query: 116 RRKE 119
R+E
Sbjct: 174 EREE 177
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 47 QTASALRHN----SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102
+TA + H+ + S +WT EE+ + E LAK+ R+ KI+K + +TV V
Sbjct: 102 KTAKIMVHSPTKPASYSVKWTIEEKELFEQGLAKFG-----RRWTKISKLIGSRTVLQVK 156
Query: 103 LRCRWMTK-------KENGKRRKEDHNSARKNKDRKEKATDSSA 139
R K + +K HN KN+D+ KA S
Sbjct: 157 SYARQYFKNKVKCGLDKETPNQKTGHNLQVKNEDKGTKAWTPSC 200
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1
SV=2
Length = 621
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104
ST WT EEQ +LE L Y ++ R+ KIA+ + +T +D R
Sbjct: 551 STPWTTEEQKLLEQALKTYPVNTP-ERWEKIAEAVPGRTKKDCMRR 595
>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorhabditis elegans
GN=ZK688.2 PE=3 SV=1
Length = 632
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 31/167 (18%)
Query: 10 NNNNQEGSSAAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSI 69
N N +GS A S N VNS + N IDTS + L +G P + +
Sbjct: 465 NTNIADGSHANNNSFTNSAFVNSGEDLSNKR--IDTSSSQPQLA--TGKRGSEHPFQHHV 520
Query: 70 LEDLLAKYASD-----------------SAVNRYAKIAKQLKDKTVRDVALRCRWMTKK- 111
L+D+L SD + V R+ + QL+ + RD + ++
Sbjct: 521 LDDVLEDDESDENQLTIRKKSSVLQPAITLVERFNEATGQLETEVKRDEKKKKEEELREE 580
Query: 112 -ENGKRRKEDHNSARKNKDRKEKAT--------DSSAKSSSHLAARP 149
+NGK K++ ++ +DR + T S ++ SH RP
Sbjct: 581 GDNGKEEKDNKEDKKEEQDRPSRPTRPFFIGVVRSESEDHSHPHLRP 627
>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1
Length = 640
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKE 119
T WT EE I+ A NR+A+IAK L +T D A++ W + +R+ E
Sbjct: 145 TSWTEEEDRIIYQ-----AHKRLGNRWAEIAKLLPGRT--DNAIKNHWNS---TMRRKVE 194
Query: 120 DHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPP 157
+++ + A +S + +SHL G ++APP
Sbjct: 195 QEGYLQESSKASQPAVTTSFQKNSHLM----GFTHAPP 228
>sp|Q2R9D2|Y1176_ORYSJ B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp.
japonica GN=Os11g0197600 PE=2 SV=1
Length = 406
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 17 SSAAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAK 76
S+ + + N + S+ GG A I T + A AL+ N+GI+ + T + ++ED +
Sbjct: 129 STFSAHPSKNVIIKTESDEGGMVTAAITTEKMAPALKENNGITGKRTRDVDYLMEDRVVV 188
Query: 77 YASDSAVN 84
+ S N
Sbjct: 189 FKKSSEAN 196
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDV 101
+T WT E E+ LA + ++ NR+ ++A+++ KTV DV
Sbjct: 23 TTRWTAAENKAFENALAVFDENTP-NRWERVAERVPGKTVGDV 64
>sp|Q54PP6|MYBY_DICDI Myb-like protein Y OS=Dictyostelium discoideum GN=mybY PE=4 SV=1
Length = 572
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 62 WTPEEQSILEDLLAKYASD--SAVNRYAKIAKQLKDKTVRDVALRCRWM 108
WT E+Q LED L KY S+V+R+ ++K+L + + VALR M
Sbjct: 312 WTVEDQKKLEDALTKYPPSRFSSVSRWQMVSKEL-GISPKAVALRYNQM 359
>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1
Length = 621
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104
T WT EEQ +LE L Y ++ R+ KIA+ + +T +D R
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTP-ERWEKIAEAVPGRTKKDCMKR 595
>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1
SV=4
Length = 621
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104
T WT EEQ +LE L Y ++ R+ KIA+ + +T +D R
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTP-ERWEKIAEAVPGRTKKDCMKR 595
>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2
PE=2 SV=1
Length = 621
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104
T WT EEQ +LE L Y ++ R+ KIA+ + +T +D R
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTP-ERWEKIAEAVPGRTKKDCMKR 595
>sp|Q9VHR6|ATG13_DROME Autophagy-related protein 13 homolog OS=Drosophila melanogaster
GN=Atg13 PE=1 SV=1
Length = 523
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 11 NNNQEGSSAAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSIL 70
NNN G + +K++ N VS S +I S TA+ RH+S S + P++ ++L
Sbjct: 350 NNNSAGFKSFEKNSENSVSPIKS-------LLIPASATAT-YRHHSEPSLQPPPDDDNLL 401
Query: 71 EDLLAKYAS-DSAVNRYAKIAKQ 92
++L +AS S VN AK ++
Sbjct: 402 KELHFPFASPTSHVNDLAKFYRE 424
>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2
PE=2 SV=1
Length = 621
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104
S WT EEQ +LE L Y ++ R+ KIA+ + +T +D R
Sbjct: 551 SIPWTTEEQKLLEQALKTYPVNTP-ERWEKIAEAVPGRTKKDCMRR 595
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.121 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,573,465
Number of Sequences: 539616
Number of extensions: 2864961
Number of successful extensions: 28556
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 24796
Number of HSP's gapped (non-prelim): 3683
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)