Query 029055
Match_columns 200
No_of_seqs 118 out of 128
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 98.6 2.2E-07 4.7E-12 61.7 5.9 45 60-108 2-47 (48)
2 smart00717 SANT SANT SWI3, AD 98.4 9.2E-07 2E-11 55.7 5.5 45 60-108 2-46 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.3 2.2E-06 4.7E-11 53.3 5.4 42 61-106 1-42 (45)
4 PF13921 Myb_DNA-bind_6: Myb-l 97.9 3.2E-05 6.9E-10 52.8 5.7 43 62-109 1-44 (60)
5 PLN03212 Transcription repress 96.7 0.0091 2E-07 53.4 8.3 48 55-109 73-121 (249)
6 PLN03091 hypothetical protein; 96.1 0.011 2.4E-07 56.7 5.7 47 60-111 68-114 (459)
7 PLN03212 Transcription repress 96.1 0.0073 1.6E-07 54.0 4.2 42 60-105 26-68 (249)
8 TIGR01557 myb_SHAQKYF myb-like 95.9 0.031 6.6E-07 39.4 5.9 48 59-110 3-55 (57)
9 PLN03091 hypothetical protein; 95.8 0.0092 2E-07 57.3 4.0 44 60-109 15-59 (459)
10 COG5259 RSC8 RSC chromatin rem 95.4 0.021 4.6E-07 55.4 4.6 55 60-120 280-334 (531)
11 KOG4167 Predicted DNA-binding 95.1 0.036 7.9E-07 56.3 5.4 41 58-103 618-658 (907)
12 KOG0048 Transcription factor, 94.9 0.04 8.6E-07 47.7 4.6 42 59-107 62-103 (238)
13 KOG0048 Transcription factor, 94.3 0.046 1E-06 47.3 3.6 54 59-118 9-64 (238)
14 KOG1279 Chromatin remodeling f 92.2 0.27 5.9E-06 47.9 5.6 58 55-117 249-306 (506)
15 KOG0724 Zuotin and related mol 87.0 0.83 1.8E-05 40.8 4.1 53 60-112 32-88 (335)
16 PF00046 Homeobox: Homeobox do 80.1 7.2 0.00016 25.7 5.5 47 60-111 5-51 (57)
17 KOG1194 Predicted DNA-binding 79.8 4.1 8.8E-05 40.0 5.7 43 55-102 183-225 (534)
18 KOG3554 Histone deacetylase co 79.1 1.8 3.9E-05 42.8 3.1 42 60-105 286-327 (693)
19 PF13837 Myb_DNA-bind_4: Myb/S 78.6 7 0.00015 27.8 5.4 52 60-111 2-66 (90)
20 KOG3841 TEF-1 and related tran 77.5 9 0.0002 37.0 7.2 51 60-111 77-144 (455)
21 PF13873 Myb_DNA-bind_5: Myb/S 74.2 7.8 0.00017 27.3 4.6 53 59-113 2-71 (78)
22 KOG0457 Histone acetyltransfer 73.0 5.9 0.00013 38.4 4.8 48 57-108 70-117 (438)
23 KOG0049 Transcription factor, 72.1 4 8.6E-05 41.9 3.5 41 59-103 412-452 (939)
24 PRK13923 putative spore coat p 71.4 18 0.0004 30.9 6.9 44 61-107 7-52 (170)
25 KOG4329 DNA-binding protein [G 70.8 5.6 0.00012 38.2 4.0 44 56-103 274-317 (445)
26 PF11626 Rap1_C: TRF2-interact 67.5 3.9 8.4E-05 30.4 1.8 41 59-110 47-87 (87)
27 KOG0050 mRNA splicing protein 62.6 9.5 0.00021 38.1 4.0 46 60-109 8-54 (617)
28 PF11035 SnAPC_2_like: Small n 55.8 21 0.00046 33.6 4.8 52 59-111 21-72 (344)
29 PF04504 DUF573: Protein of un 53.4 53 0.0011 25.1 6.0 53 60-112 5-65 (98)
30 PLN03162 golden-2 like transcr 53.2 1.4E+02 0.003 29.3 9.9 54 58-111 236-289 (526)
31 PF12579 DUF3755: Protein of u 49.8 12 0.00026 24.2 1.6 18 180-197 5-22 (35)
32 cd01021 GEWL Goose Egg White L 49.5 19 0.00041 30.4 3.2 45 60-110 115-165 (166)
33 PF01285 TEA: TEA/ATTS domain 48.4 22 0.00049 34.1 3.9 49 59-108 49-112 (431)
34 smart00426 TEA TEA domain. 48.1 34 0.00075 25.4 4.0 22 60-81 4-25 (68)
35 PF07750 GcrA: GcrA cell cycle 45.2 29 0.00062 28.9 3.6 44 60-109 1-44 (162)
36 KOG0049 Transcription factor, 44.2 22 0.00049 36.7 3.3 47 60-107 306-352 (939)
37 PLN03142 Probable chromatin-re 44.1 32 0.0007 36.6 4.6 39 60-102 825-863 (1033)
38 smart00389 HOX Homeodomain. DN 44.0 75 0.0016 20.4 4.8 47 60-111 5-51 (56)
39 PF12776 Myb_DNA-bind_3: Myb/S 40.9 45 0.00098 23.9 3.7 50 61-110 1-63 (96)
40 PF09111 SLIDE: SLIDE; InterP 39.7 1.1E+02 0.0024 24.4 6.0 53 56-109 46-110 (118)
41 cd00086 homeodomain Homeodomai 37.3 1.1E+02 0.0024 19.6 5.2 48 59-111 4-51 (59)
42 PF10415 FumaraseC_C: Fumarase 37.2 19 0.0004 25.1 1.1 28 85-112 13-42 (55)
43 PF15583 Imm41: Immunity prote 35.1 62 0.0013 27.6 4.1 50 58-110 107-156 (158)
44 smart00595 MADF subfamily of S 32.5 58 0.0013 23.1 3.1 26 84-110 28-53 (89)
45 PF08914 Myb_DNA-bind_2: Rap1 32.5 94 0.002 22.3 4.2 50 60-111 3-57 (65)
46 PF07011 DUF1313: Protein of u 30.5 47 0.001 25.8 2.5 22 174-195 16-37 (87)
47 PF05030 SSXT: SSXT protein (N 29.6 56 0.0012 24.0 2.6 23 174-196 9-31 (65)
48 PF11229 DUF3028: Protein of u 28.3 81 0.0018 31.8 4.2 60 51-112 304-366 (589)
49 PF10835 DUF2573: Protein of u 26.3 1.1E+02 0.0023 23.6 3.7 52 67-118 5-82 (82)
50 KOG2656 DNA methyltransferase 25.8 31 0.00068 33.5 0.9 39 62-105 133-177 (445)
51 COG1549 Queuine tRNA-ribosyltr 25.5 32 0.0007 34.1 1.0 54 49-108 293-346 (519)
52 PF12179 IKKbetaNEMObind: I-ka 25.4 79 0.0017 21.1 2.5 18 177-194 2-19 (38)
53 COG5118 BDP1 Transcription ini 24.6 1.4E+02 0.0031 29.2 5.0 42 59-105 365-406 (507)
54 COG5147 REB1 Myb superfamily p 22.9 52 0.0011 32.6 1.8 40 61-104 22-61 (512)
55 PF12833 HTH_18: Helix-turn-he 22.9 88 0.0019 21.6 2.6 26 83-108 30-58 (81)
56 cd06929 NR_LBD_F1 Ligand-bindi 22.4 1.7E+02 0.0038 22.9 4.5 40 64-105 128-170 (174)
57 cd01051 Mn_catalase Manganese 22.2 1E+02 0.0022 25.4 3.1 37 70-106 101-138 (156)
58 PF09441 Abp2: ARS binding pro 20.0 1.5E+02 0.0032 25.7 3.7 42 68-110 56-109 (175)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.55 E-value=2.2e-07 Score=61.68 Aligned_cols=45 Identities=31% Similarity=0.541 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-CcCHHHHHHHhHhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWM 108 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-~KTvrDVAlR~rwm 108 (200)
..||.||..+|.+++.+|+.+ +|.+||..+| +||..+|-.|.+-+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~----~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD----NWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT----HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc----HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 469999999999999999987 9999999999 99999999887643
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.39 E-value=9.2e-07 Score=55.66 Aligned_cols=45 Identities=38% Similarity=0.618 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
..||.+|..+|..++..|.. .+|.+||..||+||..||..|++-+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~----~~w~~Ia~~~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK----NNWEKIAKELPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 47999999999999999986 5699999999999999998887654
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.28 E-value=2.2e-06 Score=53.33 Aligned_cols=42 Identities=38% Similarity=0.641 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055 61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106 (200)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r 106 (200)
.||.||...|..++..|.. .+|.+||..+|+||..||..|+.
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~----~~w~~Ia~~~~~rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK----NNWEKIAKELPGRTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc----CCHHHHHhHcCCCCHHHHHHHHH
Confidence 4999999999999999985 57999999999999999988864
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.91 E-value=3.2e-05 Score=52.77 Aligned_cols=43 Identities=35% Similarity=0.622 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh-hh
Q 029055 62 WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW-MT 109 (200)
Q Consensus 62 WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw-m~ 109 (200)
||.||..+|.++...|.. .|.+||..||+||..+|-.|++. +.
T Consensus 1 WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-----DWKKIAEHLGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS------HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-----CHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence 999999999999999964 69999999988999999999998 54
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.68 E-value=0.0091 Score=53.44 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=38.1
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055 55 NSGIS-TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (200)
Q Consensus 55 ~~~~~-~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~ 109 (200)
++.+. ..||.||..+|.+.-..|. .||.+||..||++| |++.|=||..
T Consensus 73 ~P~I~kgpWT~EED~lLlel~~~~G-----nKWs~IAk~LpGRT--DnqIKNRWns 121 (249)
T PLN03212 73 RPSVKRGGITSDEEDLILRLHRLLG-----NRWSLIAGRIPGRT--DNEIKNYWNT 121 (249)
T ss_pred chhcccCCCChHHHHHHHHHHHhcc-----ccHHHHHhhcCCCC--HHHHHHHHHH
Confidence 34444 3799999999988877776 48999999999999 5566777765
No 6
>PLN03091 hypothetical protein; Provisional
Probab=96.08 E-value=0.011 Score=56.69 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||..+|-+.-.+|. .||.+||..||++|--+|--|...+-+|
T Consensus 68 gpWT~EED~lLLeL~k~~G-----nKWskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 68 GTFSQQEENLIIELHAVLG-----NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCHHHHHHHHHHHHHhC-----cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4699999999999999987 4899999999999976665554444444
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.08 E-value=0.0073 Score=54.04 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc-CCcCHHHHHHHh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-KDKTVRDVALRC 105 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L-P~KTvrDVAlR~ 105 (200)
..||+||..+|-++..+|.. .+|.+||..+ +++|.++|-.|.
T Consensus 26 g~WT~EEDe~L~~lV~kyG~----~nW~~IAk~~g~gRT~KQCReRW 68 (249)
T PLN03212 26 GPWTVEEDEILVSFIKKEGE----GRWRSLPKRAGLLRCGKSCRLRW 68 (249)
T ss_pred CCCCHHHHHHHHHHHHHhCc----ccHHHHHHhhhcCCCcchHHHHH
Confidence 46999999999999999974 4799999988 699999996663
No 8
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=95.90 E-value=0.031 Score=39.40 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHH---HHHHHHcC-Cc-CHHHHHHHhHhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRY---AKIAKQLK-DK-TVRDVALRCRWMTK 110 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry---~KIAa~LP-~K-TvrDVAlR~rwm~~ 110 (200)
...||.||...|.++|..|.... | .+|+.++. .+ |..+|+.+.+.+-.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~----~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPD----WATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCc----ccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 35799999999999999998732 4 67877653 55 99999999987654
No 9
>PLN03091 hypothetical protein; Provisional
Probab=95.83 E-value=0.0092 Score=57.27 Aligned_cols=44 Identities=27% Similarity=0.585 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc-CCcCHHHHHHHhHhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-KDKTVRDVALRCRWMT 109 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L-P~KTvrDVAlR~rwm~ 109 (200)
..||.||.++|.+++.+|.. ..|.+||..+ ++||.++|-.| |..
T Consensus 15 g~WTpEEDe~L~~~V~kyG~----~nWs~IAk~~g~gRT~KQCRER--W~N 59 (459)
T PLN03091 15 GLWSPEEDEKLLRHITKYGH----GCWSSVPKQAGLQRCGKSCRLR--WIN 59 (459)
T ss_pred CCCCHHHHHHHHHHHHHhCc----CCHHHHhhhhccCcCcchHhHH--HHh
Confidence 46999999999999999975 4799999887 49999999555 553
No 10
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.38 E-value=0.021 Score=55.35 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhhhccccccc
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKED 120 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke~~kRRKed 120 (200)
-.||.+|.-.|-+|+..|.+| |.|||..+.+||+.||++|.-.+---++. ++|.|
T Consensus 280 k~WS~qE~~LLLEGIe~ygDd-----W~kVA~HVgtKt~EqCIl~FL~LPieD~~-l~k~~ 334 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDD-----WDKVARHVGTKTKEQCILHFLQLPIEDNY-LSKGD 334 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhh-----HHHHHHHhCCCCHHHHHHHHHcCCcchhh-hhccc
Confidence 379999999999999999865 99999999999999999999988765553 44444
No 11
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=95.07 E-value=0.036 Score=56.28 Aligned_cols=41 Identities=32% Similarity=0.525 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHH
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL 103 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAl 103 (200)
-+..||+.|.+.|.++|-.|.+| |++|+.||+.|||.+|.-
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KD-----F~~v~km~~~KtVaqCVe 658 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKD-----FIFVQKMVKSKTVAQCVE 658 (907)
T ss_pred CcccccHHHHHHHHHHHHHhccc-----HHHHHHHhccccHHHHHH
Confidence 35689999999999999998876 889999999999999753
No 12
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.90 E-value=0.04 Score=47.69 Aligned_cols=42 Identities=29% Similarity=0.525 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw 107 (200)
.-.||.||..++-++=++|. .||.+||..||++|--+| +=.|
T Consensus 62 rg~fT~eEe~~Ii~lH~~~G-----NrWs~IA~~LPGRTDNeI--KN~W 103 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLG-----NRWSLIAGRLPGRTDNEV--KNHW 103 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHC-----cHHHHHHhhCCCcCHHHH--HHHH
Confidence 35799999999999988886 589999999999999988 4446
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.29 E-value=0.046 Score=47.30 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-CcCHHHHHHHhHhhhh-hhhccccc
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWMTK-KENGKRRK 118 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-~KTvrDVAlR~rwm~~-ke~~kRRK 118 (200)
.-.||.||..+|-+...+|... +|.-||..++ +++=+.| |.||+.. +-+-||..
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~----~W~~i~k~~gl~R~GKSC--RlRW~NyLrP~ikrg~ 64 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKH----NGTALPKLAGLRRCGKSC--RLRWTNYLRPDLKRGN 64 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCC----CcchhhhhcCCCccchHH--HHHhhcccCCCccCCC
Confidence 3579999999999999999987 8999999999 7776665 8899975 44445554
No 14
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=92.24 E-value=0.27 Score=47.94 Aligned_cols=58 Identities=17% Similarity=0.354 Sum_probs=50.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhhhcccc
Q 029055 55 NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRR 117 (200)
Q Consensus 55 ~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke~~kRR 117 (200)
.....-.||.+|--.|.+++.+|.++ |.|||..+..||..||.+++..+--++.-...
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~dd-----W~kVa~hVg~ks~eqCI~kFL~LPieD~~l~~ 306 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGDD-----WNKVADHVGTKSQEQCILKFLRLPIEDPYLAK 306 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhccc-----HHHHHhccCCCCHHHHHHHHHhcCccchhhhh
Confidence 45566789999999999999999865 88999999999999999999988777665544
No 15
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=0.83 Score=40.82 Aligned_cols=53 Identities=25% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCC-c--hhhHHHHHHHHcCC-cCHHHHHHHhHhhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASD-S--AVNRYAKIAKQLKD-KTVRDVALRCRWMTKKE 112 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e-~--~v~Ry~KIAa~LP~-KTvrDVAlR~rwm~~ke 112 (200)
..|+.++.+.++.+|..|..+ + ..++|.+++++||. +++.|+.-++.-...--
T Consensus 32 ~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v 88 (335)
T KOG0724|consen 32 SLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDV 88 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHH
Confidence 459999999999999999974 2 66999999999999 99999998887775443
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=80.15 E-value=7.2 Score=25.74 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+|.++..+||+.... ...+.......||..| +-|..+| -.|...+
T Consensus 5 ~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~l-~l~~~~V---~~WF~nr 51 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-NPYPSKEEREELAKEL-GLTERQV---KNWFQNR 51 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-SSSCHHHHHHHHHHHH-TSSHHHH---HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-hccccccccccccccc-ccccccc---ccCHHHh
Confidence 56899999999999997 6667778999999999 8888888 4677654
No 17
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=79.84 E-value=4.1 Score=40.00 Aligned_cols=43 Identities=19% Similarity=0.488 Sum_probs=37.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHH
Q 029055 55 NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102 (200)
Q Consensus 55 ~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVA 102 (200)
...+.-+||.||.-+||.+...|. .+|.||=.+||.|++-.+.
T Consensus 183 r~~~~d~WT~Ed~vlFe~aF~~~G-----K~F~kIrq~LP~rsLaSlv 225 (534)
T KOG1194|consen 183 RTEFPDEWTAEDIVLFEQAFQFFG-----KDFHKIRQALPHRSLASLV 225 (534)
T ss_pred cCCCcccchHHHHHHHHHHHHHhc-----ccHHHHHHHccCccHHHHH
Confidence 356778999999999999999998 5799999999999986654
No 18
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=79.07 E-value=1.8 Score=42.82 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~ 105 (200)
-+||.-|-.+|||+|.||.+|=+-+| ++.||=|+++++.-=+
T Consensus 286 EEWSasEanLFEeALeKyGKDFndIr----qdfLPWKSl~sIveyY 327 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKDFNDIR----QDFLPWKSLTSIVEYY 327 (693)
T ss_pred hhccchhhHHHHHHHHHhcccHHHHH----HhhcchHHHHHHHHHH
Confidence 47999999999999999999975455 4899999999987543
No 19
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=78.64 E-value=7 Score=27.82 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHh--hcC-------CchhhHHHHHHHHcC----CcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAK--YAS-------DSAVNRYAKIAKQLK----DKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~k--y~~-------e~~v~Ry~KIAa~LP----~KTvrDVAlR~rwm~~k 111 (200)
..||.+|-.+|-+.... +.. -....-|..||..|. ++|+.+|--|+.-|.++
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46999999999888877 221 123347999999985 78999998888888765
No 20
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=77.52 E-value=9 Score=36.96 Aligned_cols=51 Identities=24% Similarity=0.505 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHhhcC---------C--------chhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYAS---------D--------SAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~---------e--------~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
-.||+.=-..|.|+|+.||+ + .=|.||+|.- +=..+|-.+|...++=+.++
T Consensus 77 gvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlr-tgktRTrKQVSSHIQVlarr 144 (455)
T KOG3841|consen 77 GVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLR-TGKTRTRKQVSSHIQVLARR 144 (455)
T ss_pred cccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHH
Confidence 46999988899999999998 2 2467888874 44678899999999988755
No 21
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=74.20 E-value=7.8 Score=27.35 Aligned_cols=53 Identities=23% Similarity=0.438 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC-------c-----hhhHHHHHHHHc-----CCcCHHHHHHHhHhhhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASD-------S-----AVNRYAKIAKQL-----KDKTVRDVALRCRWMTKKEN 113 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e-------~-----~v~Ry~KIAa~L-----P~KTvrDVAlR~rwm~~ke~ 113 (200)
...||.+|..+|-+.+.+|+.= + --.-|..||..| +.||+.+| |-+|-.-|..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~l--kkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQL--KKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHHH
Confidence 3579999999999999998651 1 224588888887 24565554 4445444433
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=72.99 E-value=5.9 Score=38.36 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
-...+||.+|--.|-+++..|.=. -|.-||..+..||.+||---+..+
T Consensus 70 i~~~~WtadEEilLLea~~t~G~G----NW~dIA~hIGtKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFG----NWQDIADHIGTKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCC----cHHHHHHHHcccchHHHHHHHHHH
Confidence 456789999999999999999755 699999999999999998766543
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=72.11 E-value=4 Score=41.92 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHH
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL 103 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAl 103 (200)
.-.||..|...|-....+|... -|.|||+.||+||-|+.-.
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g----~WakcA~~Lp~~t~~q~~r 452 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKG----NWAKCAMLLPKKTSRQLRR 452 (939)
T ss_pred cCceeecchHHHHHHHHHHccc----hHHHHHHHccccchhHHHH
Confidence 3469999999999999999875 7999999999999977543
No 24
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=71.38 E-value=18 Score=30.90 Aligned_cols=44 Identities=23% Similarity=0.570 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCc--hhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055 61 EWTPEEQSILEDLLAKYASDS--AVNRYAKIAKQLKDKTVRDVALRCRW 107 (200)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~--~v~Ry~KIAa~LP~KTvrDVAlR~rw 107 (200)
.||.||..+|.+.+.+|-.+- .+.-|.-++..|-. |.- |.+.||
T Consensus 7 awt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~r-t~a--ac~fRw 52 (170)
T PRK13923 7 AWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKR-TAA--ACGFRW 52 (170)
T ss_pred hhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhh-hHH--HHHhHH
Confidence 599999999999999999974 77778778877754 443 556667
No 25
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=70.82 E-value=5.6 Score=38.24 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHH
Q 029055 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL 103 (200)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAl 103 (200)
..-...||.+|-+.||++|..|.++=.++| |..|+.++|+++.-
T Consensus 274 rd~l~~wsEeEcr~FEegl~~yGKDF~lIr----~nkvrtRsvgElVe 317 (445)
T KOG4329|consen 274 RDDLSGWSEEECRNFEEGLELYGKDFHLIR----ANKVRTRSVGELVE 317 (445)
T ss_pred ccccccCCHHHHHHHHHHHHHhcccHHHHH----hcccccchHHHHHH
Confidence 334467999999999999999999976666 47789999999754
No 26
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=67.45 E-value=3.9 Score=30.42 Aligned_cols=41 Identities=24% Similarity=0.475 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ 110 (200)
.--||.|+...|..+ +. ..|...+.......|+.|.+|+.+
T Consensus 47 ~GiWT~eDD~~L~~~------~~-----~~~~~L~~khG~~~i~~R~~FL~k 87 (87)
T PF11626_consen 47 PGIWTPEDDEMLRSG------DK-----DDIERLIKKHGEERIERRKEFLEK 87 (87)
T ss_dssp TT---HHHHHHHTS--------H-----HHHHHHHHHH-HHHHHHHHHHHT-
T ss_pred CCCcCHHHHHHHHcC------CH-----HHHHHHHHHhCHHHHHHHHHHHhC
Confidence 346999999999555 11 112223334467788999998864
No 27
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=62.65 E-value=9.5 Score=38.10 Aligned_cols=46 Identities=30% Similarity=0.636 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHh-Hhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC-RWMT 109 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~-rwm~ 109 (200)
-.|+..|..+|.-+..+|.. .-|.+||..|+-||.|+|=.|. .|+.
T Consensus 8 gvwrntEdeilkaav~kyg~----nqws~i~sll~~kt~rqC~~rw~e~ld 54 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGK----NQWSRIASLLNRKTARQCKARWEEWLD 54 (617)
T ss_pred ceecccHHHHHHHHHHHcch----HHHHHHHHHHhhcchhHHHHHHHHHhC
Confidence 36999999999999999987 4799999999999999998875 4554
No 28
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=55.77 E-value=21 Score=33.63 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+-||.-|.+.|-.+|..-...++ ..|..||..||++..-+|.-=++|++.+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~e-pd~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPE-PDAAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCC-cCHHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 468999999999999987654444 4566799999999999888888888754
No 29
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=53.44 E-value=53 Score=25.14 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCc-------hhhHHHHHHHHcCCc-CHHHHHHHhHhhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDS-------AVNRYAKIAKQLKDK-TVRDVALRCRWMTKKE 112 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~-------~v~Ry~KIAa~LP~K-TvrDVAlR~rwm~~ke 112 (200)
-.||.|+--.|-++|+.|..+. .-.=|..|...|... |..||.-.+|.|.+|=
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 4699998888889999995532 123455555665544 8899999999998773
No 30
>PLN03162 golden-2 like transcription factor; Provisional
Probab=53.24 E-value=1.4e+02 Score=29.25 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
....||.|=.+.|.+++.....|..+=+-|.=.+.+++-|...|+..+|.+.-.
T Consensus 236 pRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~ 289 (526)
T PLN03162 236 AKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSH 289 (526)
T ss_pred CcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHh
Confidence 457899999999999999999775333444445789999999999999988654
No 31
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=49.80 E-value=12 Score=24.24 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 029055 180 LEQNAQMFNQISANFGTF 197 (200)
Q Consensus 180 LEqNaq~lnQI~aNlst~ 197 (200)
+++|.-+|-|++.||.++
T Consensus 5 ~~eNidLf~~~R~NI~~i 22 (35)
T PF12579_consen 5 LQENIDLFCQTRDNILAI 22 (35)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 689999999999999765
No 32
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=49.49 E-value=19 Score=30.44 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHcCCcC-----HHHHHHHhHhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDKT-----VRDVALRCRWMTK 110 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~-~v~Ry~KIAa~LP~KT-----vrDVAlR~rwm~~ 110 (200)
..|+.+++ |+-+|+-|-..+ .|.||-. +|--| |+||.-|.+|+..
T Consensus 115 ~~w~~~~~--l~~aLAAYNAG~g~V~~y~g----ipp~~et~~Yv~~Vlar~~~~~~ 165 (166)
T cd01021 115 PTWTKEQQ--LKGGISAYNAGAGNVRSYEG----MDIGTTGNDYSNDVVARAQYYKR 165 (166)
T ss_pred CCCchhhh--hhhHHHHhccCHHHHhhcCC----CCCCcchHHHHHHHHHHHHHHhc
Confidence 34666533 344788888876 8888843 55433 7899999999863
No 33
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=48.39 E-value=22 Score=34.12 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC---------------chhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 59 STEWTPEEQSILEDLLAKYASD---------------SAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e---------------~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
...|+++=-..|.++|+.|++. .-|.+||+.... -.+|-.+|+.+++-|
T Consensus 49 ~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 49 EGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp S--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 3579999999999999999984 245678876654 358899999999999
No 34
>smart00426 TEA TEA domain.
Probab=48.08 E-value=34 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCc
Q 029055 60 TEWTPEEQSILEDLLAKYASDS 81 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~ 81 (200)
..|+++=-.+|.++|..|++..
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~g 25 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPCG 25 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCccC
Confidence 4699998999999999999863
No 35
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=45.15 E-value=29 Score=28.95 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~ 109 (200)
++||+|+...|.++... . .-+.+||..|.+-|---|+=+++-|.
T Consensus 1 M~Wtde~~~~L~~lw~~---G---~SasqIA~~lg~vsRnAViGk~hRlg 44 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAE---G---LSASQIARQLGGVSRNAVIGKAHRLG 44 (162)
T ss_pred CCCCHHHHHHHHHHHHc---C---CCHHHHHHHhCCcchhhhhhhhhccc
Confidence 58999999988887743 2 45789999999888888888887774
No 36
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=44.24 E-value=22 Score=36.74 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw 107 (200)
-+||.||...|-....+-...+. +-|.||-.-+|+||-.+.+-|.-+
T Consensus 306 keWsEEed~kL~alV~~~~~nSh-I~w~kVV~Ympgr~~~qLI~R~~~ 352 (939)
T KOG0049|consen 306 KEWSEEEDTKLIALVKITSINSH-IQWDKVVQYMPGRTRQQLITRFSH 352 (939)
T ss_pred hhcchhhhHHHHHHHHHhhccCc-cchHHHHHhcCCcchhhhhhhhee
Confidence 68999999999888777666655 789999999999999998877643
No 37
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=44.13 E-value=32 Score=36.58 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHH
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVA 102 (200)
.+||.-+-..|-.++.+|.. .-|.+||..+.+||+.+|.
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr----~~~~~i~~~~~~k~~~ev~ 863 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGR----NDIKSIASEMEGKTEEEVE 863 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCH----hHHHHHHHHhcCCCHHHHH
Confidence 45777777777777777764 4588999999999999997
No 38
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=44.00 E-value=75 Score=20.40 Aligned_cols=47 Identities=26% Similarity=0.413 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+|.++..+|++...+-+ .+.-.....||..| +-|.++|. .|+..+
T Consensus 5 ~~~~~~~~~~L~~~f~~~~-~P~~~~~~~la~~~-~l~~~qV~---~WF~nr 51 (56)
T smart00389 5 TSFTPEQLEELEKEFQKNP-YPSREEREELAAKL-GLSERQVK---VWFQNR 51 (56)
T ss_pred CcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH-CcCHHHHH---HhHHHH
Confidence 3489999999999988766 45557778888887 56666664 466655
No 39
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=40.93 E-value=45 Score=23.93 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHhhcC------Cc--hhhHHHHHHHHcCC-----cCHHHHHHHhHhhhh
Q 029055 61 EWTPEEQSILEDLLAKYAS------DS--AVNRYAKIAKQLKD-----KTVRDVALRCRWMTK 110 (200)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~------e~--~v~Ry~KIAa~LP~-----KTvrDVAlR~rwm~~ 110 (200)
.||+++-++|-++|..... +. .-.-|..|+..|-. .|..+|--|++.|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 5999999999999977632 22 22458888888754 356677777666654
No 40
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=39.66 E-value=1.1e+02 Score=24.39 Aligned_cols=53 Identities=25% Similarity=0.455 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH------------cCCcCHHHHHHHhHhhh
Q 029055 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ------------LKDKTVRDVALRCRWMT 109 (200)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~------------LP~KTvrDVAlR~rwm~ 109 (200)
......||.||.+-|--.|.+|.-+.+ .-|.+|-+. |..+|.-++..||.-|-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~-~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAE-GNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTST-THHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCC-chHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 344567999999999999999998655 567777665 46899999999999874
No 41
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=37.34 E-value=1.1e+02 Score=19.57 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
...++.+...+||+.....+ .+.-.....||..+. -+.++|. .|+..+
T Consensus 4 r~~~~~~~~~~Le~~f~~~~-~P~~~~~~~la~~~~-l~~~qV~---~WF~nr 51 (59)
T cd00086 4 RTRFTPEQLEELEKEFEKNP-YPSREEREELAKELG-LTERQVK---IWFQNR 51 (59)
T ss_pred CCcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHC-cCHHHHH---HHHHHH
Confidence 35689999999999999944 666678889999884 6677765 466655
No 42
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=37.18 E-value=19 Score=25.07 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=18.6
Q ss_pred HHHHHH--HHcCCcCHHHHHHHhHhhhhhh
Q 029055 85 RYAKIA--KQLKDKTVRDVALRCRWMTKKE 112 (200)
Q Consensus 85 Ry~KIA--a~LP~KTvrDVAlR~rwm~~ke 112 (200)
+-.+|| +.--++|||||++...||...|
T Consensus 13 ~aa~iAk~A~~~g~svre~v~~~g~lt~ee 42 (55)
T PF10415_consen 13 KAAEIAKEALAEGRSVREVVLEEGLLTEEE 42 (55)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCCCHHH
Confidence 444555 3457999999999999998765
No 43
>PF15583 Imm41: Immunity protein 41
Probab=35.14 E-value=62 Score=27.59 Aligned_cols=50 Identities=20% Similarity=0.393 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ 110 (200)
+...=|.||...|..+|..|...|. .| -++.|+|+-.+.+.|--|.-+.+
T Consensus 107 IrI~at~EE~~~~~~aL~dF~~~p~--~Y-dL~Em~deedi~Emae~~e~lr~ 156 (158)
T PF15583_consen 107 IRITATSEENTAINKALKDFARNPL--EY-DLSEMCDEEDIYEMAEICEELRK 156 (158)
T ss_pred EEEecCHHHHHHHHHHHHHHHhCHH--hh-hHHHhCCHHHHHHHHHHHHHHHh
Confidence 3456689999999999999999984 33 47899999999999988876643
No 44
>smart00595 MADF subfamily of SANT domain.
Probab=32.52 E-value=58 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.2
Q ss_pred hHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055 84 NRYAKIAKQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 84 ~Ry~KIAa~LP~KTvrDVAlR~rwm~~ 110 (200)
.=|..||..|.. |+.||..|.+-|..
T Consensus 28 ~aW~~Ia~~l~~-~~~~~~~kw~~LR~ 53 (89)
T smart00595 28 KAWEEIAEELGL-SVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 469999999987 99999998888854
No 45
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=32.50 E-value=94 Score=22.34 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCC----chhhHHHHHHHHcC-CcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASD----SAVNRYAKIAKQLK-DKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e----~~v~Ry~KIAa~LP-~KTvrDVAlR~rwm~~k 111 (200)
+..|.||..+|-+-+..+... ..-.-|..+|..-| .-|-. ++|.||++.-
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQ--SwR~Ry~K~L 57 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQ--SWRDRYLKHL 57 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SH--HHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHH--HHHHHHHHHH
Confidence 467999999999999877654 24477988888876 33332 7899998764
No 46
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=30.52 E-value=47 Score=25.78 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=18.7
Q ss_pred hhHHhHHHHHHHHHHHHHHhhh
Q 029055 174 GITGDILEQNAQMFNQISANFG 195 (200)
Q Consensus 174 g~~~~LLEqNaq~lnQI~aNls 195 (200)
+.++.+|+||--+++||-.|=.
T Consensus 16 ~qVQ~iLDqNR~LI~eINqNHe 37 (87)
T PF07011_consen 16 VQVQSILDQNRLLINEINQNHE 37 (87)
T ss_pred HHHHHHHHHhHHHHHHHhhccc
Confidence 3567899999999999998854
No 47
>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []. The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].
Probab=29.65 E-value=56 Score=23.97 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.8
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhc
Q 029055 174 GITGDILEQNAQMFNQISANFGT 196 (200)
Q Consensus 174 g~~~~LLEqNaq~lnQI~aNlst 196 (200)
...+.+||||.|++.-|-++..-
T Consensus 9 ~~IQk~LdEN~~LI~~I~e~qn~ 31 (65)
T PF05030_consen 9 EQIQKMLDENDQLIQCIQEYQNK 31 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45689999999999999877543
No 48
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=28.34 E-value=81 Score=31.80 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=45.3
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhcCC---chhhHHHHHHHHcCCcCHHHHHHHhHhhhhhh
Q 029055 51 ALRHNSGISTEWTPEEQSILEDLLAKYASD---SAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (200)
Q Consensus 51 ~lK~~~~~~~~WT~eEq~~LE~~L~ky~~e---~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke 112 (200)
.+|...+..--|+.= -...|..+..||.+ ..+.-|+.+|.||...|-.| +-|+.||.+..
T Consensus 304 AMKlP~P~~h~Ws~L-c~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~e-idrItqitK~n 366 (589)
T PF11229_consen 304 AMKLPSPAQHCWSLL-CETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTDTE-IDRITQITKDN 366 (589)
T ss_pred HhcCCChhhHHHHHH-HHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCHHH-HHHHHHhhhcc
Confidence 455555555567522 34567777888876 48899999999999999999 89999998753
No 49
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=26.30 E-value=1.1e+02 Score=23.63 Aligned_cols=52 Identities=19% Similarity=0.430 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcC----Cc------hh---hHHHHHHHHcCCcC-------------HHHHHHHhHhhhhhhhccccc
Q 029055 67 QSILEDLLAKYAS----DS------AV---NRYAKIAKQLKDKT-------------VRDVALRCRWMTKKENGKRRK 118 (200)
Q Consensus 67 q~~LE~~L~ky~~----e~------~v---~Ry~KIAa~LP~KT-------------vrDVAlR~rwm~~ke~~kRRK 118 (200)
+..|+.+|.||.. |+ .| ..|.-||...|--+ +|.+...++-|....+..++|
T Consensus 5 ~eq~dgLveKytELL~Ge~~~e~~EkVk~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~Ik~lNe~~r~~~~k 82 (82)
T PF10835_consen 5 QEQFDGLVEKYTELLLGETSPEMKEKVKQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEIKQLNEAHRANKQK 82 (82)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4568999999986 21 22 45778999998654 789999999998775544443
No 50
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=25.84 E-value=31 Score=33.46 Aligned_cols=39 Identities=36% Similarity=0.581 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhhcCCchhhHHHHHHHH-----cCC-cCHHHHHHHh
Q 029055 62 WTPEEQSILEDLLAKYASDSAVNRYAKIAKQ-----LKD-KTVRDVALRC 105 (200)
Q Consensus 62 WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~-----LP~-KTvrDVAlR~ 105 (200)
||.||-.-|=++-.+|+ -||+-||+- .+. +||.|.--|+
T Consensus 133 WskeETD~LF~lck~fD-----LRf~VIaDRyd~qq~~~sRTvEdLKeRy 177 (445)
T KOG2656|consen 133 WSKEETDYLFDLCKRFD-----LRFFVIADRYDNQQYKKSRTVEDLKERY 177 (445)
T ss_pred ccHHHHHHHHHHHHhcC-----eeEEEEeeccchhhccccccHHHHHHHH
Confidence 99999999999999997 577778876 777 9999988774
No 51
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=25.47 E-value=32 Score=34.11 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=41.6
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 49 ASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 49 ~~~lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
-|...++-...-.|+.||-+.-.+.|..|=.-. .|.+|-+.+|+ |+..-||-=+
T Consensus 293 YPa~~YDi~VtG~WseEE~~~v~~~l~~yl~k~---~~~~vIAhv~g---r~~~E~~~e~ 346 (519)
T COG1549 293 YPAAHYDIPVTGHWSEEEKEFVAELLKSYLEKT---DYRKVIAHVPG---REAVERVLEA 346 (519)
T ss_pred CcccccCccccccccHHHHHHHHHHHHHHhhhc---CCceEEEEcCc---hhHHHHHhhc
Confidence 355778888888999999999999999987754 57778888888 5555555444
No 52
>PF12179 IKKbetaNEMObind: I-kappa-kinase-beta NEMO binding domain; InterPro: IPR022007 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF00069 from PFAM. These proteins are involved in inflammatory reactions. They cause release of NF-kappa-B into the nucleus of inflammatory cells and upregulation of transcription of proinflammatory cytokines. They perform this function by phosphorylating I-kappa-B proteins which are targeted for degradation to release NF-kappa-B. This kinase (I-kappa-kinase-beta) is found in association with IKK-alpha and NEMO (NF-kappa-B essential modulator). This domain is the binding site of IKK-beta for NEMO. ; GO: 0008384 IkappaB kinase activity; PDB: 3BRT_C 3BRV_C.
Probab=25.37 E-value=79 Score=21.10 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 029055 177 GDILEQNAQMFNQISANF 194 (200)
Q Consensus 177 ~~LLEqNaq~lnQI~aNl 194 (200)
.+||+||-.++.|+..=|
T Consensus 2 ~~lv~En~~~lsqL~s~m 19 (38)
T PF12179_consen 2 EQLVEENQNYLSQLESLM 19 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 489999999999997644
No 53
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=24.63 E-value=1.4e+02 Score=29.25 Aligned_cols=42 Identities=12% Similarity=0.379 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~ 105 (200)
+..||.+|-..|=-+|..+.-| |.-|+.++|+|.-++|-+.+
T Consensus 365 ~~~Ws~~e~ekFYKALs~wGtd-----F~LIs~lfP~R~RkqIKaKf 406 (507)
T COG5118 365 ALRWSKKEIEKFYKALSIWGTD-----FSLISSLFPNRERKQIKAKF 406 (507)
T ss_pred CCcccHHHHHHHHHHHHHhcch-----HHHHHHhcCchhHHHHHHHH
Confidence 4579999999999999998755 66799999999999886654
No 54
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=22.88 E-value=52 Score=32.62 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHH
Q 029055 61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104 (200)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR 104 (200)
.|+.+|...|.-+-.+|.... |.+||..|.-+|-.|+-.|
T Consensus 22 sw~~~EDe~l~~~vk~l~~nn----ws~vas~~~~~~~kq~~~r 61 (512)
T COG5147 22 SWKRTEDEDLKALVKKLGPNN----WSKVASLLISSTGKQSSNR 61 (512)
T ss_pred CCCCcchhHHHHHHhhccccc----HHHHHHHhcccccccccch
Confidence 899999999998888887765 9999999999999998554
No 55
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=22.86 E-value=88 Score=21.59 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=17.8
Q ss_pred hhHHHHHHHHc---CCcCHHHHHHHhHhh
Q 029055 83 VNRYAKIAKQL---KDKTVRDVALRCRWM 108 (200)
Q Consensus 83 v~Ry~KIAa~L---P~KTvrDVAlR~rwm 108 (200)
..|..++..+| ++.++.|||.+|-+-
T Consensus 30 ~~R~~~a~~~L~~~~~~~i~~ia~~~Gf~ 58 (81)
T PF12833_consen 30 ELRLQRAKELLRQNTDLSIAEIAEECGFS 58 (81)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHcCCC
Confidence 35667777776 799999999998664
No 56
>cd06929 NR_LBD_F1 Ligand-binding domain of nuclear receptor family 1. Ligand-binding domain (LBD) of nuclear receptor (NR) family 1: This is one of the major subfamily of nuclear receptors, including thyroid receptor, retinoid acid receptor, ecdysone receptor, farnesoid X receptor, vitamin D receptor, and other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=22.35 E-value=1.7e+02 Score=22.93 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhcC---CchhhHHHHHHHHcCCcCHHHHHHHh
Q 029055 64 PEEQSILEDLLAKYAS---DSAVNRYAKIAKQLKDKTVRDVALRC 105 (200)
Q Consensus 64 ~eEq~~LE~~L~ky~~---e~~v~Ry~KIAa~LP~KTvrDVAlR~ 105 (200)
.+.|..+-++|..|.. ...-.||.+|-..||. +|.++.++
T Consensus 128 ~~~q~~~~~aL~~y~~~~~~~~~~Rf~~Ll~~l~~--lr~l~~~~ 170 (174)
T cd06929 128 EKLQERLLEALQRYLKVNHPDAPQMFAKLLKKLTE--LRTLNELH 170 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhHH--HHHHHHHH
Confidence 5677777888888742 1244799999999997 78887765
No 57
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=22.21 E-value=1e+02 Score=25.41 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCc-hhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055 70 LEDLLAKYASDS-AVNRYAKIAKQLKDKTVRDVALRCR 106 (200)
Q Consensus 70 LE~~L~ky~~e~-~v~Ry~KIAa~LP~KTvrDVAlR~r 106 (200)
.++...-...|. .+.+|.+++.+..+.+++++..|+.
T Consensus 101 ~~~L~~ni~aE~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~ 138 (156)
T cd01051 101 VADLRSNIAAESRARLTYERLYEMTDDPGVKDTLSFLL 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444455554 8899999999999999999998853
No 58
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=20.03 E-value=1.5e+02 Score=25.75 Aligned_cols=42 Identities=31% Similarity=0.511 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHHcCC-----------cCHHHHHHHh-Hhhhh
Q 029055 68 SILEDLLAKYASDSAVNRYAKIAKQLKD-----------KTVRDVALRC-RWMTK 110 (200)
Q Consensus 68 ~~LE~~L~ky~~e~~v~Ry~KIAa~LP~-----------KTvrDVAlR~-rwm~~ 110 (200)
-.|=+++.+|... ++.-|+++|..|+= .-|.+-|.|+ |||..
T Consensus 56 ~~Lf~LI~k~~~k-eikTW~~La~~LGVepp~~ek~qStQKvqQYaVRLKRWM~a 109 (175)
T PF09441_consen 56 FTLFELIRKLESK-EIKTWAQLALELGVEPPDPEKGQSTQKVQQYAVRLKRWMRA 109 (175)
T ss_pred HHHHHHHHHHhhh-hHhHHHHHHHHhCCCCCCcccccchHHHHHHHHHHHHHHHH
Confidence 3566777887766 77999999999952 2366777777 67754
Done!