Query 029055
Match_columns 200
No_of_seqs 118 out of 128
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgx_A KIAA1903 protein; MYB D 99.4 1.1E-12 3.9E-17 95.6 6.7 51 60-111 9-59 (73)
2 4eef_G F-HB80.4, designed hema 99.3 1.4E-13 5E-18 101.0 -0.5 48 58-106 19-66 (74)
3 2cqq_A RSGI RUH-037, DNAJ homo 99.2 3.3E-11 1.1E-15 87.1 7.0 51 59-111 8-58 (72)
4 2cjj_A Radialis; plant develop 99.2 3.3E-11 1.1E-15 91.0 6.9 52 59-111 8-59 (93)
5 2cqr_A RSGI RUH-043, DNAJ homo 99.2 8E-11 2.7E-15 85.3 7.7 52 58-110 17-68 (73)
6 2yum_A ZZZ3 protein, zinc fing 99.0 1.3E-09 4.4E-14 77.5 6.9 52 60-111 9-61 (75)
7 2eqr_A N-COR1, N-COR, nuclear 98.7 1.5E-08 5.2E-13 70.1 5.2 43 58-105 11-53 (61)
8 2yqk_A Arginine-glutamic acid 98.6 5.8E-08 2E-12 67.9 6.4 46 60-111 10-56 (63)
9 2yus_A SWI/SNF-related matrix- 98.5 9E-08 3.1E-12 69.9 5.5 51 53-108 12-62 (79)
10 2crg_A Metastasis associated p 98.5 2.3E-07 8E-12 66.2 6.3 51 59-114 8-59 (70)
11 2cu7_A KIAA1915 protein; nucle 98.5 1.7E-07 5.9E-12 66.3 5.6 47 60-111 10-56 (72)
12 1x41_A Transcriptional adaptor 98.4 5.2E-07 1.8E-11 61.8 5.6 46 59-108 8-53 (60)
13 2elk_A SPCC24B10.08C protein; 98.3 1.6E-06 5.4E-11 59.2 6.0 45 59-107 9-54 (58)
14 1guu_A C-MYB, MYB proto-oncoge 98.2 2E-06 6.8E-11 56.8 5.1 45 60-108 4-48 (52)
15 2d9a_A B-MYB, MYB-related prot 98.2 3E-06 1E-10 57.6 5.5 45 60-108 9-53 (60)
16 2din_A Cell division cycle 5-l 98.1 3E-06 1E-10 58.7 4.8 47 60-112 10-56 (66)
17 1gvd_A MYB proto-oncogene prot 98.1 3.6E-06 1.2E-10 55.7 4.7 43 60-106 4-46 (52)
18 2dim_A Cell division cycle 5-l 98.1 7.9E-06 2.7E-10 57.1 6.0 46 60-109 10-55 (70)
19 1w0t_A Telomeric repeat bindin 98.0 1.1E-05 3.8E-10 53.7 5.6 47 60-110 3-51 (53)
20 2iw5_B Protein corest, REST co 98.0 1.1E-05 3.8E-10 70.0 6.7 47 58-109 132-178 (235)
21 2k9n_A MYB24; R2R3 domain, DNA 98.0 1.1E-05 3.8E-10 60.4 5.8 48 60-112 54-101 (107)
22 1gv2_A C-MYB, MYB proto-oncoge 97.9 9.7E-06 3.3E-10 60.1 4.8 48 59-111 56-103 (105)
23 2ltp_A Nuclear receptor corepr 97.1 1.4E-06 4.8E-11 64.3 0.0 47 60-111 17-63 (89)
24 4a69_C Nuclear receptor corepr 97.9 2.2E-05 7.5E-10 58.8 5.6 43 58-105 42-84 (94)
25 3osg_A MYB21; transcription-DN 97.8 1.9E-05 6.6E-10 60.7 5.1 47 60-111 63-109 (126)
26 1h8a_C AMV V-MYB, MYB transfor 97.8 1.7E-05 5.8E-10 60.9 4.6 47 60-111 80-126 (128)
27 1gv2_A C-MYB, MYB proto-oncoge 97.8 2.3E-05 7.9E-10 58.0 4.7 45 60-108 5-49 (105)
28 2k9n_A MYB24; R2R3 domain, DNA 97.8 2.8E-05 9.6E-10 58.2 5.0 44 60-107 2-45 (107)
29 3sjm_A Telomeric repeat-bindin 97.7 9.4E-05 3.2E-09 51.7 7.0 47 59-109 11-59 (64)
30 1ity_A TRF1; helix-turn-helix, 97.7 0.00014 4.8E-09 50.7 7.1 50 58-111 9-60 (69)
31 2llk_A Cyclin-D-binding MYB-li 97.7 6.3E-05 2.2E-09 54.3 5.4 51 54-110 17-68 (73)
32 3osg_A MYB21; transcription-DN 97.7 4.7E-05 1.6E-09 58.6 4.9 45 59-108 11-55 (126)
33 1h89_C C-MYB, MYB proto-oncoge 97.6 4.9E-05 1.7E-09 60.2 4.6 48 59-111 110-157 (159)
34 1h8a_C AMV V-MYB, MYB transfor 97.6 7.3E-05 2.5E-09 57.3 5.2 45 60-108 28-72 (128)
35 3zqc_A MYB3; transcription-DNA 97.5 0.00011 3.6E-09 56.8 5.1 47 60-111 55-101 (131)
36 3zqc_A MYB3; transcription-DNA 97.3 7.9E-05 2.7E-09 57.5 2.3 45 60-108 3-47 (131)
37 1x58_A Hypothetical protein 49 97.3 0.00032 1.1E-08 49.7 5.2 51 58-113 7-60 (62)
38 1h89_C C-MYB, MYB proto-oncoge 97.2 0.00039 1.3E-08 54.9 4.8 48 59-110 58-105 (159)
39 2xag_B REST corepressor 1; ami 97.2 0.00059 2E-08 64.3 6.8 46 57-107 378-423 (482)
40 1ug2_A 2610100B20RIK gene prod 97.1 0.0036 1.2E-07 47.7 9.5 57 52-110 26-82 (95)
41 2ckx_A NGTRF1, telomere bindin 97.1 0.001 3.4E-08 48.9 5.7 47 61-111 2-52 (83)
42 2xag_B REST corepressor 1; ami 96.8 0.00018 6.2E-09 67.7 0.0 48 58-111 188-235 (482)
43 3hm5_A DNA methyltransferase 1 96.7 0.0026 8.9E-08 48.1 5.4 54 60-118 31-89 (93)
44 2roh_A RTBP1, telomere binding 96.5 0.01 3.5E-07 46.7 7.9 51 57-111 29-83 (122)
45 2aje_A Telomere repeat-binding 96.5 0.0049 1.7E-07 47.3 5.8 52 56-111 10-65 (105)
46 1ign_A Protein (RAP1); RAP1,ye 96.2 0.0043 1.5E-07 54.1 4.9 52 60-111 9-61 (246)
47 2lr8_A CAsp8-associated protei 94.9 0.0013 4.4E-08 47.8 0.0 56 52-110 7-62 (70)
48 2juh_A Telomere binding protei 95.9 0.0087 3E-07 47.0 4.5 49 58-110 16-68 (121)
49 1irz_A ARR10-B; helix-turn-hel 93.4 0.19 6.6E-06 35.5 5.9 53 58-111 6-59 (64)
50 1ofc_X ISWI protein; nuclear p 93.2 0.072 2.5E-06 47.5 4.2 39 60-102 111-149 (304)
51 1fex_A TRF2-interacting telome 90.9 0.44 1.5E-05 32.5 5.1 49 59-109 2-55 (59)
52 4iej_A DNA methyltransferase 1 90.7 0.44 1.5E-05 36.0 5.3 47 60-111 31-82 (93)
53 4b4c_A Chromodomain-helicase-D 90.1 0.32 1.1E-05 39.3 4.6 43 59-103 7-51 (211)
54 2ebi_A DNA binding protein GT- 74.4 4.8 0.00016 28.3 4.7 53 59-111 4-65 (86)
55 1ofc_X ISWI protein; nuclear p 74.3 6.9 0.00023 34.7 6.6 56 54-110 207-274 (304)
56 2da3_A Alpha-fetoprotein enhan 72.0 13 0.00046 25.2 6.4 51 56-111 18-68 (80)
57 2hzd_A Transcriptional enhance 68.0 9.3 0.00032 28.1 5.1 52 59-111 6-74 (82)
58 2y9y_A Imitation switch protei 67.8 4.2 0.00014 37.2 3.8 39 60-102 124-163 (374)
59 2dmp_A Zinc fingers and homeob 64.3 35 0.0012 24.1 7.6 46 61-111 19-64 (89)
60 2dmt_A Homeobox protein BARH-l 60.3 38 0.0013 23.2 8.4 51 56-111 18-68 (80)
61 1wh5_A ZF-HD homeobox family p 57.7 45 0.0015 23.2 9.0 51 57-111 19-72 (80)
62 3a02_A Homeobox protein arista 53.8 41 0.0014 21.6 6.0 49 58-111 2-50 (60)
63 2cuf_A FLJ21616 protein; homeo 49.9 27 0.00094 24.8 4.9 37 57-94 9-45 (95)
64 2ecb_A Zinc fingers and homeob 48.6 73 0.0025 23.0 7.4 47 61-112 17-63 (89)
65 2dmu_A Homeobox protein goosec 41.3 71 0.0024 21.1 5.7 49 58-111 10-58 (70)
66 2dmn_A Homeobox protein TGIF2L 40.6 61 0.0021 22.5 5.4 49 59-111 11-61 (83)
67 2h1k_A IPF-1, pancreatic and d 40.6 66 0.0022 20.9 5.3 48 59-111 7-54 (63)
68 2da6_A Hepatocyte nuclear fact 39.6 38 0.0013 25.4 4.4 36 57-93 8-43 (102)
69 2hi3_A Homeodomain-only protei 38.5 69 0.0024 21.4 5.3 49 59-111 6-54 (73)
70 1wh7_A ZF-HD homeobox family p 37.2 1E+02 0.0035 21.4 8.7 49 58-111 20-72 (80)
71 2y9y_A Imitation switch protei 36.7 52 0.0018 30.0 5.6 55 59-114 228-297 (374)
72 1uhs_A HOP, homeodomain only p 36.2 94 0.0032 20.6 5.8 49 59-111 5-53 (72)
73 2pk2_A Cyclin-T1, protein TAT; 34.4 8.4 0.00029 34.0 0.0 8 55-62 308-315 (358)
74 2dmq_A LIM/homeobox protein LH 32.6 1E+02 0.0035 20.7 5.5 49 58-111 10-58 (80)
75 2h8r_A Hepatocyte nuclear fact 32.1 1E+02 0.0036 26.0 6.4 45 49-94 136-180 (221)
76 2kt0_A Nanog, homeobox protein 31.9 1.2E+02 0.0041 20.6 9.1 50 57-111 24-73 (84)
77 2da1_A Alpha-fetoprotein enhan 31.7 1.1E+02 0.0038 20.0 5.8 49 58-111 10-58 (70)
78 2dms_A Homeobox protein OTX2; 30.1 1.3E+02 0.0044 20.3 5.8 49 58-111 10-58 (80)
79 2e5h_A Zinc finger CCHC-type a 29.0 51 0.0017 21.9 3.3 26 51-79 17-42 (94)
80 2ly9_A Zinc fingers and homeob 28.8 1.3E+02 0.0044 19.9 7.4 50 57-111 8-57 (74)
81 2da2_A Alpha-fetoprotein enhan 28.4 1.3E+02 0.0043 19.7 6.6 49 58-111 10-58 (70)
82 3nar_A ZHX1, zinc fingers and 27.8 1.6E+02 0.0055 20.7 6.5 49 58-111 28-76 (96)
83 1b72_B Protein (PBX1); homeodo 25.9 1.6E+02 0.0054 20.1 5.6 49 59-111 5-55 (87)
84 2djn_A Homeobox protein DLX-5; 25.6 1.5E+02 0.005 19.5 6.6 48 59-111 11-58 (70)
85 1fjl_A Paired protein; DNA-bin 25.4 1.5E+02 0.0053 20.0 5.3 51 56-111 19-69 (81)
86 4g9s_A Lysozyme G, goose-type 25.4 19 0.00066 28.9 0.7 35 73-110 145-184 (187)
87 1x2m_A LAG1 longevity assuranc 24.8 1.3E+02 0.0045 20.5 4.8 43 65-111 10-52 (64)
88 1ign_A Protein (RAP1); RAP1,ye 24.6 2E+02 0.0068 24.9 6.9 25 85-109 173-197 (246)
89 1x2n_A Homeobox protein pknox1 23.9 1.6E+02 0.0055 19.4 5.5 49 59-111 11-61 (73)
90 3hug_A RNA polymerase sigma fa 22.4 1.2E+02 0.0041 20.6 4.3 41 64-107 25-65 (92)
91 2cq3_A RNA-binding protein 9; 22.3 82 0.0028 21.3 3.4 27 50-79 15-41 (103)
92 1bw5_A ISL-1HD, insulin gene e 22.1 1.7E+02 0.0057 18.9 6.4 48 59-111 7-54 (66)
93 2cra_A Homeobox protein HOX-B1 22.0 1.7E+02 0.006 19.1 6.8 48 59-111 11-58 (70)
94 2k40_A Homeobox expressed in E 21.7 1.7E+02 0.0059 18.9 5.7 48 59-111 5-52 (67)
95 2xb0_X Chromo domain-containin 21.6 1.8E+02 0.0062 25.1 6.2 51 59-111 3-62 (270)
96 2vi6_A Homeobox protein nanog; 21.6 1.7E+02 0.0057 18.7 6.4 48 59-111 7-54 (62)
97 2cqc_A Arginine/serine-rich sp 21.3 1.2E+02 0.0041 19.9 4.1 26 51-79 16-41 (95)
98 1au7_A Protein PIT-1, GHF-1; c 20.7 2.7E+02 0.0094 21.1 6.5 49 58-111 90-138 (146)
99 2e1o_A Homeobox protein PRH; D 20.3 1.9E+02 0.0065 18.9 5.5 48 59-111 11-58 (70)
100 2da5_A Zinc fingers and homeob 20.0 2.1E+02 0.007 19.2 6.5 48 59-111 11-58 (75)
No 1
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=1.1e-12 Score=95.65 Aligned_cols=51 Identities=12% Similarity=0.220 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||+++||++|+.|+.+.+ +||.+||+++|+||+.||..|+..+...
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp-~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKP-GFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSS-SHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCc-cHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 46999999999999999999988 8999999999999999999999988443
No 2
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.31 E-value=1.4e-13 Score=100.97 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r 106 (200)
.+..||.||+++||.+|++||.+++ +||.|||++||+||+.||..+++
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tp-dRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTP-DRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCC-SSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC-cHHHHHHHHcCCCCHHHHHHHHH
Confidence 3567999999999999999999998 99999999999999999987764
No 3
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.20 E-value=3.3e-11 Score=87.09 Aligned_cols=51 Identities=29% Similarity=0.576 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
...||.||+++||.+|++|+.+++ +||.+||+.| +||+.||..|++-|.+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~-~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTP-GRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCT-THHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCC-cHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 457999999999999999999987 8999999998 89999999998888543
No 4
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.19 E-value=3.3e-11 Score=91.03 Aligned_cols=52 Identities=23% Similarity=0.509 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
...||.||+++|+++|.+|+.+.+ .||.+||..||+||+.||..|++-+.++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~-~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTP-DRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCT-THHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCC-chHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999876 8999999999999999999999888644
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.16 E-value=8e-11 Score=85.33 Aligned_cols=52 Identities=27% Similarity=0.470 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ 110 (200)
....||.||+++|+++|.+|+.+.+ .||.+||.+||+||..||-.|+.-|.+
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~-~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSS-DCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSH-HHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCC-chHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999998866 899999999999999999999887754
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-09 Score=77.46 Aligned_cols=52 Identities=38% Similarity=0.551 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~-~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||+.+|+++|.+|..+. ...+|.+||..||+||.+||..|++++-.+
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999865 458999999999999999999999666544
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.5e-08 Score=70.10 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~ 105 (200)
....||+||.++|+++|.+|+. +|.+||..||+||+.||..+.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-----~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-----NFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-----CHHHHHHHCTTSCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHH
Confidence 3467999999999999999974 699999999999999987653
No 8
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=5.8e-08 Score=67.86 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH-HcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa-~LP~KTvrDVAlR~rwm~~k 111 (200)
..||+||.++||++|.+|.++ |.+||. +||+||+.||. +.=+|-+|
T Consensus 10 ~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v-~fYY~wKk 56 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYGKN-----FFRIRKELLPNKETGELI-TFYYYWKK 56 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTCSC-----HHHHHHHSCTTSCHHHHH-HHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCcHHHHH-HHHhcccC
Confidence 579999999999999999997 899998 69999999995 34445444
No 9
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.55 E-value=9e-08 Score=69.85 Aligned_cols=51 Identities=20% Similarity=0.426 Sum_probs=43.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 53 RHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 53 K~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
|........||.||..+|.+++.+|. .+|.+||..||+||.++|..|..-+
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-----~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-----DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-----SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-----CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 33444567899999999999999999 5899999999999999998876544
No 10
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.49 E-value=2.3e-07 Score=66.16 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH-HcCCcCHHHHHHHhHhhhhhhhc
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKKENG 114 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa-~LP~KTvrDVAlR~rwm~~ke~~ 114 (200)
...||+||.++||++|.+|.++ |.+|+. +||+||+.||..=+=--++.++.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y 59 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 59 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHHHHHTCCSS
T ss_pred CCCCCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCCHHHHHHHHHhhcCCchH
Confidence 4579999999999999999997 899999 79999999998655432334433
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=1.7e-07 Score=66.27 Aligned_cols=47 Identities=36% Similarity=0.540 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||..+|.+++.+|.. +|.+||..||+||..+|-.|.+.+-++
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999987 899999999999999999998887655
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.38 E-value=5.2e-07 Score=61.84 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
...||.||..+|.+++.+|.. .+|.+||..||+||.++|..|...+
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYMKY 53 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 357999999999999999985 4799999999999999998887654
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.27 E-value=1.6e-06 Score=59.25 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-CcCHHHHHHHhHh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRW 107 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-~KTvrDVAlR~rw 107 (200)
...||.||..+|.+++.+|.. .+|.+||..|| +||.++|..|...
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~----~~W~~IA~~~~~~Rt~~qcr~r~~~ 54 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL----GNWADIADYVGNARTKEECRDHYLK 54 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT----TCHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CCHHHHHHHHCCCCCHHHHHHHHHH
Confidence 457999999999999999974 58999999999 9999999877654
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.20 E-value=2e-06 Score=56.81 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
..||.||..+|.+++.+|.. .+|.+||..||++|..+|-.|.+.+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGT----DDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCS----SCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 47999999999999999975 4799999999999999998776543
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.17 E-value=3e-06 Score=57.57 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
..||.||..+|.+++.+|.. .+|.+||..||++|..+|-.|.+.+
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQ----QDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCT----TCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHccCCCHHHHHHHHHHH
Confidence 47999999999999999974 4799999999999999997776654
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=3e-06 Score=58.69 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke 112 (200)
..||.||..+|.++...|.. +|.+||. ||+||.++|-.|.+.+-.+.
T Consensus 10 ~~WT~eED~~L~~~~~~~g~-----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPT-----QWRTIAP-IIGRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTT-----CHHHHHH-HHSSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-----CHHHHhc-ccCcCHHHHHHHHHHHhChH
Confidence 47999999999999998874 8999999 99999999988888776553
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.10 E-value=3.6e-06 Score=55.69 Aligned_cols=43 Identities=35% Similarity=0.544 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r 106 (200)
..||.||..+|.+++.+|.. .+|.+||..||++|..+|-.|..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCc----ChHHHHHHHcCCCCHHHHHHHHH
Confidence 47999999999999999974 46999999999999999876654
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=7.9e-06 Score=57.13 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~ 109 (200)
-.||.||..+|.+++.+|.. .+|.+||..||++|.++|-.|.+.+-
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGK----NQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS----SCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 37999999999999999974 47999999999999999977765543
No 19
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.00 E-value=1.1e-05 Score=53.67 Aligned_cols=47 Identities=30% Similarity=0.372 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC--CcCHHHHHHHhHhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTK 110 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP--~KTvrDVAlR~rwm~~ 110 (200)
..||+||..+|.++..+|.. .+|.+||..+| ++|..||-.|.+-+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 46999999999999999973 47999999999 9999999877666544
No 20
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.98 E-value=1.1e-05 Score=69.97 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~ 109 (200)
....||.||..+|+++|.+|..+ |.+||..||+||+.+|-..+.+..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKD-----W~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSC-----HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45689999999999999999876 999999999999999977655443
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.97 E-value=1.1e-05 Score=60.40 Aligned_cols=48 Identities=27% Similarity=0.598 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke 112 (200)
..||.||..+|.+++..|.. +|.+||..||++|-.+|-.|.+-+.++.
T Consensus 54 ~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEYGP-----KWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 47999999999999999984 7999999999999999988888776653
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.93 E-value=9.7e-06 Score=60.05 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
...||.||..+|.+++.+|.. +|.+||..||++|..+|--|.+-+-++
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 357999999999999999974 799999999999999988887655443
No 23
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.15 E-value=1.4e-06 Score=64.33 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||..+|.+++..|.. +|.+||..||++|..+|-.|...+-++
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~-----~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGR-----NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 36999999999999999964 699999999999999998887655444
No 24
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.85 E-value=2.2e-05 Score=58.83 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~ 105 (200)
....||+||..+|+++|..|+++ |-+||..||+||+.||..=+
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~-----F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTC-----HHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC-----HHHHHHHcCCCCHHHHHHHH
Confidence 45679999999999999999864 78999999999999998543
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.83 E-value=1.9e-05 Score=60.75 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||..+|.+++.+|.. +|.+||..||++|-.+|--|...+.+|
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGR-----QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 36999999999999999984 699999999999999998887776655
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.82 E-value=1.7e-05 Score=60.86 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||..+|.+++.+|.. +|.+||..||++|..+|-.|.+-+.+|
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCS-----CHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred ccCCHHHHHHHHHHHHHHCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999984 799999999999999998887766543
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.78 E-value=2.3e-05 Score=57.99 Aligned_cols=45 Identities=31% Similarity=0.468 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
..||.||..+|.+++.+|.. .+|.+||..||++|..+|-.|.+-+
T Consensus 5 ~~WT~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC----CcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 47999999999999999975 4699999999999999998776544
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.77 E-value=2.8e-05 Score=58.17 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw 107 (200)
..||.||..+|.+++.+|.. .+|.+||..||++|.++|-.|..-
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA----KDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS----SCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC----CCHHHHhhhcCCCCHHHHHHHHHH
Confidence 36999999999999999985 479999999999999999877554
No 29
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.74 E-value=9.4e-05 Score=51.67 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC--CcCHHHHHHHhHhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMT 109 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP--~KTvrDVAlR~rwm~ 109 (200)
...||+||..+|.++..+|.. ..|.+||..+| ++|..||--|.+=|.
T Consensus 11 k~~WT~eED~~L~~~V~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGE----GNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCC----CchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999964 36999999977 999988877766554
No 30
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.68 E-value=0.00014 Score=50.68 Aligned_cols=50 Identities=28% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC--CcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP--~KTvrDVAlR~rwm~~k 111 (200)
....||.||..+|.++..+|.. .+|.+||..|| ++|..||-.|.+-+-..
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCS----SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 4467999999999999999963 47999999999 99999997776665443
No 31
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.67 E-value=6.3e-05 Score=54.27 Aligned_cols=51 Identities=29% Similarity=0.459 Sum_probs=41.5
Q ss_pred cCCCCC-CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055 54 HNSGIS-TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 54 ~~~~~~-~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ 110 (200)
+++.+. ..||+||..+|.++..+|.. +|.+||..| ++|..+|--|.+.|.+
T Consensus 17 ldP~i~k~~wT~EED~~L~~l~~~~G~-----kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 17 QGDRNHVGKYTPEEIEKLKELRIKHGN-----DWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp --CCCCCCSSCHHHHHHHHHHHHHHSS-----CHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCC-----CHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 344444 47999999999999999985 499999999 9999998888776643
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.66 E-value=4.7e-05 Score=58.56 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
...||.||..+|.++..+|.. +|.+||..||++|.++|..|.+-.
T Consensus 11 k~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGS-----DWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTT-----CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHhhh
Confidence 357999999999999999964 699999999999999998776654
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.62 E-value=4.9e-05 Score=60.15 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
...||.||..+|.+++..|.. +|.+||..||++|--+|--|...+.++
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred ccCCChHHHHHHHHHHHHHCC-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 357999999999999999984 899999999999999988887766543
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.60 E-value=7.3e-05 Score=57.30 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
..||.||..+|.+++.+|.. .+|.+||..||++|..+|-.|..-+
T Consensus 28 ~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKYGP----KRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTCS----CCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCC----CCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 57999999999999999985 3699999999999999998776544
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.51 E-value=0.00011 Score=56.84 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||..+|.++...|.. +|.+||..||++|-.+|--|..-+-++
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGS-----KWSVIAKLIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCS-----CHHHHTTTSTTCCHHHHHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999984 699999999999999987776655554
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.33 E-value=7.9e-05 Score=57.55 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm 108 (200)
-.||.||..+|.+++.+|.. ..|.+||..||++|.++|-.|++-.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGP----QNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCS----CCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCc----CCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 36999999999999999974 3699999999999999997776433
No 37
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.32 E-value=0.00032 Score=49.72 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH---HcCCcCHHHHHHHhHhhhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAK---QLKDKTVRDVALRCRWMTKKEN 113 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa---~LP~KTvrDVAlR~rwm~~ke~ 113 (200)
....||.||...|.++..+|.. .|.+|+. .++++|-=|+.-|+|-|.+++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-----HWNSILWSFPFQKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-----CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-----hHHHHHHhCCCccCcccchHHHHHHHHHhccc
Confidence 4568999999999999999974 6999994 6889999999999999987753
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.18 E-value=0.00039 Score=54.94 Aligned_cols=48 Identities=29% Similarity=0.436 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ 110 (200)
...||.||..+|.++..+|.. .+|.+||..||++|..+|-.|.+-+-.
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS----CCHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred CCCCChHHHHHHHHHHHHhCc----ccHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 357999999999999999975 479999999999999999877665433
No 39
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.17 E-value=0.00059 Score=64.27 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107 (200)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw 107 (200)
.+...||.||..+|.++|.+|..+ |.+||..|++||+.+|-.-+.|
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkd-----w~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTC-----HHHHHHHHSSCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHhCCCCHHHHHHHHHH
Confidence 346789999999999999999875 9999999999999999886654
No 40
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.14 E-value=0.0036 Score=47.74 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=45.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055 52 LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ 110 (200)
++......+.||.||.+++-....+-. +..++|..||..|.||+.-+|-.|++-|-+
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~G--~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQEQG--AQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHTT--SCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEeccccCHHHHHHHHhcC--CChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 566677788999999988766655533 233689999999999999999999998754
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.06 E-value=0.001 Score=48.95 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH----cCCcCHHHHHHHhHhhhhh
Q 029055 61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ----LKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~----LP~KTvrDVAlR~rwm~~k 111 (200)
.||.||..+|-++..+|... +|.+|+.. ||++|-.||-.|.+=|.++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g----~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTG----RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSS----CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC----CcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 59999999999999999853 89999997 9999988887777766554
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.82 E-value=0.00018 Score=67.71 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
....||.+|.++|+++|.+|+++ |.+|+..||+||+.||. ++-+|-+|
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKd-----F~~I~~~lp~Ksv~e~V-~yYY~WKK 235 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKT-----FHRIQQMLPDKSIASLV-KFYYSWKK 235 (482)
T ss_dssp ------------------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCcc-----HHHHHHHcCCCCHHHHH-HHhccccc
Confidence 44589999999999999999987 68899999999999997 33334333
No 43
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.68 E-value=0.0026 Score=48.06 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc-----CCcCHHHHHHHhHhhhhhhhccccc
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-----KDKTVRDVALRCRWMTKKENGKRRK 118 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L-----P~KTvrDVAlR~rwm~~ke~~kRRK 118 (200)
..||.||-..|-++..+|+ .||+.|+..+ +++|+.||--|+--+.++-...|.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fd-----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~ 89 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHhC-----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999998 6999999999 6899999999988887766555655
No 44
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.50 E-value=0.01 Score=46.66 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc----CCcCHHHHHHHhHhhhhh
Q 029055 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L----P~KTvrDVAlR~rwm~~k 111 (200)
-....||.||..+|-++..+|.. -+|.+||..+ +++|-.||--|.|=|.++
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGT----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34568999999999999999975 3899999985 899988887776666543
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.47 E-value=0.0049 Score=47.26 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=42.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc----CCcCHHHHHHHhHhhhhh
Q 029055 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L----P~KTvrDVAlR~rwm~~k 111 (200)
.-....||.||..+|-++..+|... +|.+|+..+ +++|-.||--|.|=|.++
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g----~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTG----RWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSS----SHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC----ChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3445689999999999999999763 899999976 899988777776666554
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.25 E-value=0.0043 Score=54.14 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhH-HHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNR-YAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~R-y~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..||.||..+|-+...+|+..-.-.+ |.+||.+||++|.++|=-|.+..-++
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 47999999999999999987521223 99999999999999998888875544
No 47
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.91 E-value=0.0013 Score=47.77 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=44.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055 52 LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ 110 (200)
+++...+..-||.||.+++-....+-. +.-..|..||..| |||..+|-.|++-|-+
T Consensus 7 ~~~~ge~vvlWTReeDR~IL~~cq~~G--~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 7 IKKKGEIIILWTRNDDRVILLECQKRG--PSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 566777888999999998755544322 3338999999999 9999999999998754
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.85 E-value=0.0087 Score=46.99 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc----CCcCHHHHHHHhHhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTK 110 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L----P~KTvrDVAlR~rwm~~ 110 (200)
....||.||..+|-++..+|.. -+|.+||..+ +++|-.||--|.|=|.+
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~----G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGT----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGG----GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999974 4899999995 99998888777766655
No 49
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.42 E-value=0.19 Score=35.48 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchh-hHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAV-NRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v-~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
....||+|....|.+++..+..|..+ .+..+ .+.+++.|...|+.+.|.+.-+
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~ 59 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVA 59 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999866321 22222 2457899999999999987643
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.17 E-value=0.072 Score=47.46 Aligned_cols=39 Identities=31% Similarity=0.449 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHH
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVA 102 (200)
.+||..|-..|..++.+|..+ .|.+||+.+++||+.+|.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~----~~~~IA~ev~~Kt~eEV~ 149 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRD----DIDNIAKDVEGKTPEEVI 149 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTT----CHHHHTTSSTTCCHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHH----HHHHHHHHhcCCCHHHHH
Confidence 479999999999999999985 488999999999999995
No 51
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=90.94 E-value=0.44 Score=32.54 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC----chhhHHHHHHH-HcCCcCHHHHHHHhHhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASD----SAVNRYAKIAK-QLKDKTVRDVALRCRWMT 109 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e----~~v~Ry~KIAa-~LP~KTvrDVAlR~rwm~ 109 (200)
.+.+|.||..+|-+-+..|... ..-.=|..||. .+|+.|-.- .|.||++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqS--wRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQS--LKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHH--HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHH--HHHHHHH
Confidence 3679999999999999999654 24478999999 899999874 6777765
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=90.67 E-value=0.44 Score=35.98 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-----CcCHHHHHHHhHhhhhh
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-----DKTVRDVALRCRWMTKK 111 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-----~KTvrDVAlR~rwm~~k 111 (200)
.+||.||-.-|=++..+|+ .||+-|++... ++||.|+--|.--+.+|
T Consensus 31 ~~WT~eETd~LfdLc~~fd-----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999998 79999999984 78999999886655544
No 53
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.15 E-value=0.32 Score=39.29 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH--HcCCcCHHHHHH
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK--QLKDKTVRDVAL 103 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa--~LP~KTvrDVAl 103 (200)
...||..|...|..++.+|..- -.||..|+. .|++||..||--
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~--~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGP--LERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSG--GGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCc--hhHHHHHHHHhccCCCCHHHHHH
Confidence 3679999999999999999742 368999985 499999998864
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=74.43 E-value=4.8 Score=28.34 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC-----chhhHHHHHHHHcC----CcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASD-----SAVNRYAKIAKQLK----DKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e-----~~v~Ry~KIAa~LP----~KTvrDVAlR~rwm~~k 111 (200)
...||.+|-.+|-++....... ..-..|..||..|- ++|..+|--|.+-|.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999998887643321 24458999999876 79999998888888765
No 55
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=74.34 E-value=6.9 Score=34.74 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=43.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHH------------HHcCCcCHHHHHHHhHhhhh
Q 029055 54 HNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIA------------KQLKDKTVRDVALRCRWMTK 110 (200)
Q Consensus 54 ~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIA------------a~LP~KTvrDVAlR~rwm~~ 110 (200)
+.+...-.||.||.+.|--+|.+|.-+.. .-|.+|- -.|-.+|.-+|+.||.-|-.
T Consensus 207 y~~~k~k~yteeEDRfLL~~l~k~G~~~~-g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 207 YGNNKGKNYTEIEDRFLVCMLHKLGFDKE-NVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CTTCCCSSCCHHHHHHHHHHHHHHCTTST-THHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCccCHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 33445568999999999999999998653 3466664 35668999999999999853
No 56
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=71.96 E-value=13 Score=25.22 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
--..+.+|.+...+||.....- ..+....-..||..| +-|.+.|-. |+..+
T Consensus 18 rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l-~l~~~qV~~---WFqNr 68 (80)
T 2da3_A 18 KRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEV-GLKKRVVQV---WFQNT 68 (80)
T ss_dssp TTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHH-TSCHHHHHH---HHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH-CcCHHHhHH---HhHHH
Confidence 3445778999999999988653 344445556788877 466666643 77655
No 57
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=67.97 E-value=9.3 Score=28.10 Aligned_cols=52 Identities=19% Similarity=0.440 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCc-----------------hhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDS-----------------AVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~-----------------~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
...|+++=-..|.++|..|++.. -|.+|+++. +-.-+|-.+|..|++-|.+.
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~-tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLR-TGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHH-HSCCCCSHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHH-HcccCCccchhHHHHHHHHH
Confidence 35799998899999999999741 245677765 44678888999999888765
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=67.76 E-value=4.2 Score=37.24 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-CcCHHHHH
Q 029055 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVA 102 (200)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-~KTvrDVA 102 (200)
.+||.-|-..|-.++.+|..+ -|.+||+.+. +||+.||.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~----d~~~IA~ev~~~Kt~eEV~ 163 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRN----SIQAIARELAPGKTLEEVR 163 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTT----CHHHHHSSCCCSSSHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHh----HHHHHHHHHccCCCHHHHH
Confidence 479999999999999999874 4789999998 99999998
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.33 E-value=35 Score=24.13 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..|.++..+||....+- ..+....-..||..|. -|.+.|-. |+..+
T Consensus 19 ~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~-l~~~qV~v---WFqNR 64 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKS-SFPTQAELDRLRVETK-LSRREIDS---WFSER 64 (89)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred cCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHhC-CCHHhccH---hhHhH
Confidence 37999999999998663 3343344567777774 56666643 87665
No 60
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.34 E-value=38 Score=23.18 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
--..+.+|.++..+||.....-+ .+....-..||..|. -|.++|-. |+..+
T Consensus 18 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~-L~~~qV~v---WFqNR 68 (80)
T 2dmt_A 18 RRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESLG-LSQLQVKT---WYQNR 68 (80)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC-CCHHHeee---ccHHH
Confidence 34567899999999999987633 444455567888774 56666653 77654
No 61
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=57.73 E-value=45 Score=23.20 Aligned_cols=51 Identities=10% Similarity=0.215 Sum_probs=36.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhh---cCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 57 GISTEWTPEEQSILEDLLAKY---ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky---~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
-..+..|.+...+||....+. ...+....-..||..| +-|.+.|-. |++.+
T Consensus 19 R~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l-gL~~~~Vkv---WFqNr 72 (80)
T 1wh5_A 19 RHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET-GVPRQVLKV---WLHNN 72 (80)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS-CCCHHHHHH---HHHHH
T ss_pred CCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh-CCCcccccC---Ccccc
Confidence 345789999999999988772 3334445556888888 566776654 88765
No 62
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=53.79 E-value=41 Score=21.59 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+.+|.+...+||..... ...+....-..||..| +-|.++|- -|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l-~l~~~qV~---~WFqNr 50 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR-THYPDVFTREELAMKI-GLTEARIQ---VWFQNR 50 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH-TSCHHHHH---HHHHHH
T ss_pred CCcccCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH-CcCHHHHH---HHhhhh
Confidence 4567899999999999866 3344445556788877 56777776 377655
No 63
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=49.86 E-value=27 Score=24.77 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC
Q 029055 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK 94 (200)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP 94 (200)
...+.||.++..+||..... ...+....-..||..|.
T Consensus 9 r~R~~ft~~ql~~Le~~F~~-~~yP~~~~r~~lA~~l~ 45 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNE-NQYPDEAKREEIANACN 45 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHC
Confidence 44578999999999999887 44555566678888775
No 64
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.60 E-value=73 Score=22.95 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhh
Q 029055 61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (200)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke 112 (200)
..|.+...+||..... ...+...+-..||..| +-|.++|-. |+..+.
T Consensus 17 ~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l-gLte~qVkv---WFqNRR 63 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN-SSVLTDEELNRLRAQT-KLTRREIDA---WFTEKK 63 (89)
T ss_dssp CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT-CCCHHHHHH---HHHHHH
T ss_pred cCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh-CcChHHCee---cccccc
Confidence 6799999999998865 4445445666788887 567778765 887763
No 65
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.34 E-value=71 Score=21.06 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+.+|.+...+||..... ...+....-..||..| +-|.++|-. |+..+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l-~l~~~qV~~---WFqNr 58 (70)
T 2dmu_A 10 HRTIFTDEQLEALENLFQE-TKYPDVGTREQLARKV-HLREEKVEV---WFKNR 58 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH-TCCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH-CCCHHHeeh---ccccc
Confidence 3567899999999999876 3344445556788777 467777664 77654
No 66
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=40.59 E-value=61 Score=22.48 Aligned_cols=49 Identities=12% Similarity=0.242 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHhh--cCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKY--ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky--~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+..|.+...+||+.+..+ ...+....-..||..+ +-|.++|-. |+..+
T Consensus 11 R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~-gLs~~qV~~---WFqNr 61 (83)
T 2dmn_A 11 KGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT-NLSLLQISN---WFINA 61 (83)
T ss_dssp CSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH-CCCHHHHHH---HHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHhhH---Hhhhh
Confidence 4568999999999998765 3334334445677776 578888875 77765
No 67
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=40.55 E-value=66 Score=20.86 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+..|.+...+||..... ...+....-..||..| +-|.+.|- -|+..+
T Consensus 7 Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l-~l~~~qV~---~WFqNr 54 (63)
T 2h1k_A 7 RTAYTRAQLLELEKEFLF-NKYISRPRRVELAVML-NLTERHIK---IWFQNR 54 (63)
T ss_dssp CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH-TCCHHHHH---HHHHHH
T ss_pred CCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh-CcCHHHhh---HHHHhh
Confidence 466899999999999864 3344444556788777 45677765 377655
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.63 E-value=38 Score=25.44 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=28.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc
Q 029055 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL 93 (200)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L 93 (200)
...+.||.+.+.+||....+=+ .+...+-..||..|
T Consensus 8 r~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~l 43 (102)
T 2da6_A 8 RNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEEC 43 (102)
T ss_dssp CCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Confidence 3467899999999999876543 56566777899988
No 69
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=38.48 E-value=69 Score=21.42 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.+...+||....+....+....-..||..|. -|.++|-. |+..+
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~-l~~~qV~~---WFqNR 54 (73)
T 2hi3_A 6 VSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG-LTEEQTQK---WFKQR 54 (73)
T ss_dssp CSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHT-SCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHH---HHHHH
Confidence 467899999999999986555554455567888774 66666653 77654
No 70
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=37.23 E-value=1e+02 Score=21.42 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHHh-h---cCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAK-Y---ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~k-y---~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+..|.++..+|| .... + ...+....-..||..| +-+.+.|-. |++.+
T Consensus 20 ~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l-gL~e~qVkv---WFqNr 72 (80)
T 1wh7_A 20 FRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET-GVRRQVLKI---WMHNN 72 (80)
T ss_dssp CCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS-CCCHHHHHH---HHHTT
T ss_pred CCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh-CcCcCcccc---ccccc
Confidence 35779999999999 6666 1 2233335556788888 566666654 88765
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=36.70 E-value=52 Score=30.03 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH------------cCCcCHHHHHHHhHhhh---hhhhc
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ------------LKDKTVRDVALRCRWMT---KKENG 114 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~------------LP~KTvrDVAlR~rwm~---~ke~~ 114 (200)
...||.||.+.|--.|-+|.=+.. .-|.+|-.. |-.+|.-++.-||.-|- .||..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~-g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRD-DVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFN 297 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCccCHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 467999999999999999987532 235555443 56799999999999884 36644
No 72
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=36.24 E-value=94 Score=20.63 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.+...+||....+....+....-..||..|. -|.++|-. |+..+
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNR 53 (72)
T 1uhs_A 5 AATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG-LTEEQTQK---WFKQR 53 (72)
T ss_dssp CCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHC-cCHHHhhH---HhHHH
Confidence 467899999999999876555555455567888774 67777754 77654
No 73
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=34.39 E-value=8.4 Score=34.01 Aligned_cols=8 Identities=25% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 029055 55 NSGISTEW 62 (200)
Q Consensus 55 ~~~~~~~W 62 (200)
..+-...|
T Consensus 308 ~~~~~~~~ 315 (358)
T 2pk2_A 308 NTGGQEAR 315 (358)
T ss_dssp --------
T ss_pred cCCCCCCc
Confidence 34444445
No 74
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.60 E-value=1e+02 Score=20.72 Aligned_cols=49 Identities=12% Similarity=0.294 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+.+|.+...+||.....-+ .+....-..||..| +-|.+.|-. |+..+
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l-~l~~~qV~~---WFqNr 58 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKT-GLTKRVLQV---WFQNA 58 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT-CCCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh-CCCHHHhhH---ccHHH
Confidence 356789999999999986533 44445556888887 467777743 77655
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=32.10 E-value=1e+02 Score=26.03 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=27.4
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC
Q 029055 49 ASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK 94 (200)
Q Consensus 49 ~~~lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP 94 (200)
.+.-|-.-...+.||.+.+.+||....+ ...+....-..||..+.
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~-~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECN 180 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHC
Confidence 4445556667788999999999999875 33343344445776543
No 76
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=31.93 E-value=1.2e+02 Score=20.57 Aligned_cols=50 Identities=12% Similarity=0.348 Sum_probs=35.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
...+.+|.+...+||..... ...+....-..||..| +-|.+.|- -|+..+
T Consensus 24 r~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l-~l~~~qV~---vWFqNR 73 (84)
T 2kt0_A 24 KTRTVFSSTQLCVLNDRFQR-QKYLSLQQMQELSNIL-NLSYKQVK---TWFQNQ 73 (84)
T ss_dssp CCSSCCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHT-TCCHHHHH---HHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHc-CCCHHHHH---HHHHHH
Confidence 44577999999999999865 3344445556788877 46777774 477665
No 77
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=31.65 E-value=1.1e+02 Score=20.04 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+.+|.+...+||.....- ..+....-..||..| +-|.+.|-. |+..+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~---WFqNr 58 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKS-GLPQKVIKH---WFRNT 58 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH-CCCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh-CCCHHHHHH---Hhhhh
Confidence 34678999999999998542 233334455778777 366777754 87654
No 78
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.06 E-value=1.3e+02 Score=20.34 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+.+|.+...+||.....- ..+....-..||..| +-|.+.|- -|+..+
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~---~WFqNR 58 (80)
T 2dms_A 10 ERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKI-NLPESRVQ---VWFKNR 58 (80)
T ss_dssp CCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-TCCHHHHH---HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH-CcCHHHhh---hhhHHH
Confidence 45679999999999998763 344445566788877 46677664 377654
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.95 E-value=51 Score=21.86 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=18.7
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhcC
Q 029055 51 ALRHNSGISTEWTPEEQSILEDLLAKYAS 79 (200)
Q Consensus 51 ~lK~~~~~~~~WT~eEq~~LE~~L~ky~~ 79 (200)
.--|..++..++|.+| |.+.+.+|..
T Consensus 17 ~~l~V~nlp~~~t~~~---l~~~f~~~G~ 42 (94)
T 2e5h_A 17 STVYVSNLPFSLTNND---LYRIFSKYGK 42 (94)
T ss_dssp TSEEEESCCTTSCHHH---HHHHTTTTSC
T ss_pred CEEEEECCCCCCCHHH---HHHHHHhcCC
Confidence 3456678888888887 6677777754
No 80
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.77 E-value=1.3e+02 Score=19.91 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=35.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
+..+.+|.+...+||....+- ..+.......||..| +-+.++|. -|...+
T Consensus 8 ~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~---~WFqNr 57 (74)
T 2ly9_A 8 GIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKIT-GLTKGEIK---KWFSDT 57 (74)
T ss_dssp CTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-CCCHHHHH---HHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CcCHHHee---eCChhH
Confidence 445789999999999998752 334445556788887 56777774 477655
No 81
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=28.36 E-value=1.3e+02 Score=19.72 Aligned_cols=49 Identities=14% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+..|.+...+||..... ...+....-..||..| +-|.+.|-. |+..+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l-~l~~~qV~~---WFqNr 58 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDA-NAYPKDDEFEQLSNLL-NLPTRVIVV---WFQNA 58 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHS-CCCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh-CCCHHHhHH---hhHhh
Confidence 4567899999999999866 3345445566788887 467777643 77654
No 82
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=27.83 E-value=1.6e+02 Score=20.72 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+..|.+...+||....+ ...+.......||..| +-|.++|- .|+..+
T Consensus 28 ~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l-~L~~~qV~---vWFqNR 76 (96)
T 3nar_A 28 KICKKTPEQLHMLKSAFVR-TQWPSPEEYDKLAKES-GLARTDIV---SWFGDT 76 (96)
T ss_dssp CSSSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH-CCCHHHHH---HHHHHH
T ss_pred CCccCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh-CCCHHHee---ecchhh
Confidence 4577899999999999865 2334445556788887 56777775 477654
No 83
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=25.95 E-value=1.6e+02 Score=20.06 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHH--hhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLA--KYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~--ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.+...+||..+. .....+....-..||..| +-|.++|-. |+..+
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~-~l~~~qV~~---WFqNr 55 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSN---WFGNK 55 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH-TSCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHHHH---HHHHH
Confidence 45688999999999984 222233334445677777 567777764 77655
No 84
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.62 E-value=1.5e+02 Score=19.52 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.++..+||.....- ..+....-..||..| +-|.++|- -|+..+
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~---~WFqNr 58 (70)
T 2djn_A 11 RTIYSSFQLAALQRRFQKT-QYLALPERAELAASL-GLTQTQVK---IWFQNK 58 (70)
T ss_dssp SCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHS-SCCHHHHH---HHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHh-CCCHHHHH---HHHHHH
Confidence 4678999999999988653 344445567788877 56777775 388665
No 85
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=25.42 E-value=1.5e+02 Score=19.98 Aligned_cols=51 Identities=12% Similarity=0.243 Sum_probs=36.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
-...+.+|.+...+||.....- ..+....-..||..| +-|.+.|- -|+..+
T Consensus 19 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~---~WFqNr 69 (81)
T 1fjl_A 19 RRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRT-NLTEARIQ---VWFQNR 69 (81)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHH---HHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH-CcCHHHHH---HHHHHH
Confidence 3456789999999999998763 344445556788887 56777775 477665
No 86
>4g9s_A Lysozyme G, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Salmo salar} PDB: 3mgw_A
Probab=25.39 E-value=19 Score=28.94 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=21.3
Q ss_pred HHHhhcCCc-hhhHHHHHHHHcCCc----CHHHHHHHhHhhhh
Q 029055 73 LLAKYASDS-AVNRYAKIAKQLKDK----TVRDVALRCRWMTK 110 (200)
Q Consensus 73 ~L~ky~~e~-~v~Ry~KIAa~LP~K----TvrDVAlR~rwm~~ 110 (200)
+|+-|-..+ .|.+|..|- |.. =|+||..|.+|+++
T Consensus 145 alAAYNaG~g~V~~~~~i~---~~~et~dYv~~Vlara~~yk~ 184 (187)
T 4g9s_A 145 GISAYNAGDKNVRTYERMD---VGTTGGDYSNDVVARSQWFKS 184 (187)
T ss_dssp HHHHHHHCGGGCCSSSCTT---TTSGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHccCchhHHhccCCC---CCchhhhHHHHHHHHHHHHHH
Confidence 455555554 566664321 222 28899999999864
No 87
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=24.77 E-value=1.3e+02 Score=20.45 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 65 EEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 65 eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
+...+||.........+...+-..||..|. -|.++|-. |+..+
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~-LterQVkv---WFqNR 52 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLD-WDVRSIQR---WFRQR 52 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHC-SCHHHHHH---HHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHHH---HHHHH
Confidence 357889998866555555455667898885 88888876 88765
No 88
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=24.55 E-value=2e+02 Score=24.89 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055 85 RYAKIAKQLKDKTVRDVALRCRWMT 109 (200)
Q Consensus 85 Ry~KIAa~LP~KTvrDVAlR~rwm~ 109 (200)
+|..||..+|..|---+=-|++.+-
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl 197 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFL 197 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHH
Confidence 8999999999999766666665544
No 89
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.95 E-value=1.6e+02 Score=19.41 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHhh--cCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKY--ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky--~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.+...+||..+..+ ...+....-..||..+ +-|.++|-. |+..+
T Consensus 11 R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-~L~~~qV~~---WFqNr 61 (73)
T 1x2n_A 11 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT-NLTLLQVNN---WFINA 61 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TCCHHHHHH---HHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-CcCHHHHHH---HhHHH
Confidence 4678999999999999652 3333334445677665 567777754 77654
No 90
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.41 E-value=1.2e+02 Score=20.58 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055 64 PEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107 (200)
Q Consensus 64 ~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw 107 (200)
.++...|.++|...+.. .|-+=+...+.+.|.++||-++-.
T Consensus 25 ~~~~~~l~~~l~~L~~~---~r~vl~l~~~~g~s~~eIA~~lgi 65 (92)
T 3hug_A 25 ALDRLLIADALAQLSAE---HRAVIQRSYYRGWSTAQIATDLGI 65 (92)
T ss_dssp HHHHHHHHHHHHTSCHH---HHHHHHHHHTSCCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHcCCCHHHHHHHHCc
Confidence 34566777777777643 222222234778888888876643
No 91
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.30 E-value=82 Score=21.30 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=19.6
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHhhcC
Q 029055 50 SALRHNSGISTEWTPEEQSILEDLLAKYAS 79 (200)
Q Consensus 50 ~~lK~~~~~~~~WT~eEq~~LE~~L~ky~~ 79 (200)
..--|..++..++|.+| |.+.+.+|..
T Consensus 15 ~~~l~V~nlp~~~t~~~---l~~~f~~~G~ 41 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPD---LRQMFGQFGK 41 (103)
T ss_dssp CCEEEEESCCTTCCHHH---HHHHGGGTSC
T ss_pred CCEEEEeCCCCCCCHHH---HHHHHHhcCC
Confidence 34556778888888887 6677788864
No 92
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=22.13 E-value=1.7e+02 Score=18.94 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.++..+||.....- ..+....-..||..| +-|.++|-. |+..+
T Consensus 7 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~---WFqNr 54 (66)
T 1bw5_A 7 RTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMT-GLSPRVIRV---WFQNK 54 (66)
T ss_dssp CCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH-TSCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH-CcCHHHHHH---HhHHH
Confidence 4678999999999998763 344434556788877 356676653 87765
No 93
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.05 E-value=1.7e+02 Score=19.13 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.+...+||.....- ..+....-..||..| +-|.++|-. |+..+
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~---WFqNR 58 (70)
T 2cra_A 11 RIPYSKGQLRELEREYAAN-KFITKDKRRKISAAT-SLSERQITI---WFQNR 58 (70)
T ss_dssp CCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-CCCHHHHHH---HHHHH
T ss_pred CCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH-CCCHHHhhH---hhHhH
Confidence 4678999999999998653 344445557788887 467777753 77665
No 94
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=21.73 E-value=1.7e+02 Score=18.93 Aligned_cols=48 Identities=15% Similarity=0.394 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.+...+||..... ...+....-..||..|. -|.+.|- -|...+
T Consensus 5 Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l~-l~~~qV~---~WFqNr 52 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRV-NCYPGIDILEDLAQKLN-LELDRIQ---IWFQNR 52 (67)
T ss_dssp SCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHT-CCHHHHH---HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHC-cCHHHhh---HhhHhH
Confidence 467899999999998865 33344455567888874 6777765 377654
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=21.65 E-value=1.8e+02 Score=25.06 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHH--HHcCCcCHH-------HHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIA--KQLKDKTVR-------DVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIA--a~LP~KTvr-------DVAlR~rwm~~k 111 (200)
...||.-|...|-.++.+|..-. .||..|+ +.|++|... ++..+|+...+-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~--~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~av~e 62 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLK--EILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHE 62 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCT--TCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999743 3788886 468888765 456778776543
No 96
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=21.56 E-value=1.7e+02 Score=18.70 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.+...+||.....- ..+....-..||..|. -|.+.|- -|+..+
T Consensus 7 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~-l~~~qV~---~WFqNr 54 (62)
T 2vi6_A 7 RTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSILN-LSYKQVK---TWFQNQ 54 (62)
T ss_dssp -CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT-CCHHHHH---HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhC-CCHHHhh---HHhHHh
Confidence 4668999999999998653 3444445567888774 6777774 388665
No 97
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.32 E-value=1.2e+02 Score=19.88 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=19.1
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhcC
Q 029055 51 ALRHNSGISTEWTPEEQSILEDLLAKYAS 79 (200)
Q Consensus 51 ~lK~~~~~~~~WT~eEq~~LE~~L~ky~~ 79 (200)
.--|..++..++|.+| |.+.+.+|..
T Consensus 16 ~~l~v~nlp~~~t~~~---l~~~f~~~G~ 41 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERD---LREVFSKYGP 41 (95)
T ss_dssp GCEEEESCCSSCCHHH---HHHHHHTTSC
T ss_pred CEEEEECCCCCCCHHH---HHHHHHhcCC
Confidence 4456778888888887 6777777764
No 98
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=20.69 E-value=2.7e+02 Score=21.13 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
..+.+|.+...+||....+- ..+....-..||..| +-|.+.|-. |+..+
T Consensus 90 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~L~~~qV~v---WFqNR 138 (146)
T 1au7_A 90 RRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEEL-NLEKEVVRV---WFCNR 138 (146)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHH---HHHHH
T ss_pred CCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCChhhchh---hhHhh
Confidence 46789999999999998663 344445556788888 567777753 77654
No 99
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.34 E-value=1.9e+02 Score=18.92 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
.+.+|.++..+||.....- ..+....-..||..| +-|.++|-. |+..+
T Consensus 11 R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~---WFqNr 58 (70)
T 2e1o_A 11 QVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKML-QLSERQVKT---WFQNR 58 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-TCCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH-CCCHHHhhH---hhHhh
Confidence 4679999999999998653 344445556788877 466777653 77654
No 100
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.02 E-value=2.1e+02 Score=19.18 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (200)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k 111 (200)
...-|.++..+||....+-+ .+....-..||..| +-|.++|-. |+..+
T Consensus 11 r~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l-~l~~~qV~~---WFqNR 58 (75)
T 2da5_A 11 YKERAPEQLRALESSFAQNP-LPLDEELDRLRSET-KMTRREIDS---WFSER 58 (75)
T ss_dssp CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH-CCCHHHHHH---HHHHH
T ss_pred CccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh-CCCHHHhhH---hhHHH
Confidence 34569999999999886533 34334456688877 467777764 88765
Done!