BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029056
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486
PE=2 SV=1
Length = 224
Score = 272 bits (695), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 123/163 (75%), Positives = 148/163 (90%)
Query: 14 KEQNSRGSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFE 73
++++S + +YLNVYDLTP+NNYLYWFG+GIFHSGIEAH LEY +GAHEY TSGV+E
Sbjct: 16 RDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYE 75
Query: 74 VEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQ 133
VEP++CPGFIFRRSVLLGTT++SR++FRS+ME LS KYHGDTYHLIAKNCNHFTEEVC+Q
Sbjct: 76 VEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQ 135
Query: 134 LTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYS 176
LTGK IPGW+NR+AR+GSFCNCLLPESIQ+TAV+ LP+R +S
Sbjct: 136 LTGKPIPGWINRLARVGSFCNCLLPESIQLTAVSALPERLEFS 178
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1
Length = 194
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 14/166 (8%)
Query: 20 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSC 79
G+N L+ LNVYD+ +N Y G+G+FHSGIE +G E+ +G H Y SG+FE+ P +
Sbjct: 2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 80 ----PGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLT 135
F F+ +V+LG+T+ + +E L +Y G+ YHL+ KNCNHF+ + L
Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILC 120
Query: 136 GKCIPGWVNRMARLGS----FCNC-----LLPESIQITAVAHLPDR 172
GK IP W+NR+A S +C L P ++Q + L D
Sbjct: 121 GKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDE 166
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1
Length = 194
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 8/147 (5%)
Query: 20 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSC 79
G+N L+ LNVYD+ +N Y G+G+FHSGIE +G E+ +G H Y SG+FE+ P +
Sbjct: 2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 80 ----PGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLT 135
F F+ +V+LG+T+ + +E L +Y G+ YHL+ KNCNHF+ + L
Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILC 120
Query: 136 GKCIPGWVNRMARLGS---FCNCLLPE 159
GK IP W+NR+A S F LP+
Sbjct: 121 GKEIPRWINRLAYFSSCIPFLQSCLPK 147
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1
Length = 194
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 8/147 (5%)
Query: 20 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSC 79
G+N L+ LNVYD+ +N Y G+G+FHSGIE +G E+ +G H Y SG+FE+ P +
Sbjct: 2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 80 ----PGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLT 135
F F+ +V+LG+T+ + +E L +Y G+ YHL+ KNCNHF+ + L
Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILC 120
Query: 136 GKCIPGWVNRMARLGS---FCNCLLPE 159
GK IP W+NR+A S F LP+
Sbjct: 121 GKEIPRWINRLAYFSSCIPFLQSCLPK 147
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1
Length = 194
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 8/147 (5%)
Query: 20 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSC 79
G+N L+ LNVYD+ +N Y G+G+FHSGIE +G E+ +G H Y SG+FE+ P +
Sbjct: 2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 80 ----PGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLT 135
F F+ +V+LG+T+ + +E L +Y G+ YHL+ KNCNHF+ + L
Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILC 120
Query: 136 GKCIPGWVNRMARLGS---FCNCLLPE 159
GK IP W+NR+A S F LP+
Sbjct: 121 GKEIPRWINRLAYFSSCIPFLQSCLPK 147
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2
SV=1
Length = 194
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 8/147 (5%)
Query: 20 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSC 79
G+N L+ LNVYD+ +N Y G+G+FHSGIE +G E+ +G H Y SG+FE+ P +
Sbjct: 2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 80 P----GFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLT 135
F F+ +V+LG+T+ + +E L +Y G+ YHL+ KNCNHF+ + L
Sbjct: 61 AELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILC 120
Query: 136 GKCIPGWVNRMARLGS---FCNCLLPE 159
GK IP W+NR+A S F LP+
Sbjct: 121 GKEIPRWINRLAYFSSCIPFLQSCLPK 147
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1
Length = 193
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 7/142 (4%)
Query: 25 LLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSC----P 80
L+ LNVYD+ +N Y G+G+FHSGIE +G E+ +G H Y SG+FE+ P +
Sbjct: 5 LVILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGE 64
Query: 81 GFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIP 140
F F+ +V+LG+T+ + +E L ++ G+ YHL+ KNCNHF+ + L GK IP
Sbjct: 65 TFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIP 124
Query: 141 GWVNRMARLGS---FCNCLLPE 159
WVNR+A S F LP+
Sbjct: 125 RWVNRLAYFSSCIPFLQSCLPK 146
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1
Length = 192
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Query: 26 LYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSC----PG 81
+ LNVYD+ +N Y G+G+FHSGI+ +G E+ +G H Y SGVFE+ P
Sbjct: 6 IILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGDT 65
Query: 82 FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPG 141
F F+ ++ LG+T+ + + +E L +Y G+ YHL+ KNCNHF+ + L GK IP
Sbjct: 66 FKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 125
Query: 142 WVNRMARLGS---FCNCLLPE 159
WVNR+A + F LP+
Sbjct: 126 WVNRLAYFSTCVPFLQSCLPK 146
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1
Length = 196
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 26 LYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSC----PG 81
+ LNVYD+ +N + G+G+FHSGIE +G E+ +G H Y SG+FE+ P
Sbjct: 6 VILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGET 65
Query: 82 FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPG 141
F F+ +++LG+T+ + + +E + +Y G+ YHL+ KNCNHF+ + L G+ IP
Sbjct: 66 FKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPR 125
Query: 142 WVNRMARLGS---FCNCLLPE 159
WVNR+A S F LP+
Sbjct: 126 WVNRLAYFSSCVPFLQSCLPK 146
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hag1 PE=1 SV=1
Length = 201
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 9/141 (6%)
Query: 26 LYLNVYDL---TPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYR-TSGVFEVEPKS-CP 80
+Y+NVYDL +P+N + GLGI+H+G+ G EY FGAHE ++GVF P+
Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62
Query: 81 GFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIP 140
G +R S+ L L + + + LS ++ G +Y L+ +NCNHFT ++LTG IP
Sbjct: 63 GCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIP 122
Query: 141 GWVNRMARLG----SFCNCLL 157
++NR++R+G + N LL
Sbjct: 123 SFLNRISRIGLAFPTITNALL 143
>sp|Q4KM30|DESI1_RAT Desumoylating isopeptidase 1 OS=Rattus norvegicus GN=Desi1 PE=2
SV=1
Length = 168
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 46 GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFME 105
GI+H+ I H E+ FG+ SG+ P V +G T ++ F ++
Sbjct: 35 GIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLS 89
Query: 106 HLSGK-YHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMAR---LGSFCNCLLP--E 159
L + G+ Y+L NCN F+ EV LTG+ IP ++ + F L P +
Sbjct: 90 SLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLD 149
Query: 160 SIQI 163
SIQI
Sbjct: 150 SIQI 153
>sp|Q9CQT7|DESI1_MOUSE Desumoylating isopeptidase 1 OS=Mus musculus GN=Desi1 PE=1 SV=1
Length = 168
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 46 GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFME 105
GI+H+ I H E+ FG+ SG+ P V +G T ++ F ++
Sbjct: 35 GIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLS 89
Query: 106 HLSGK-YHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMAR---LGSFCNCLLP--E 159
L + G+ Y+L NCN F+ EV LTG+ IP ++ + F L P +
Sbjct: 90 SLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLD 149
Query: 160 SIQI 163
SIQI
Sbjct: 150 SIQI 153
>sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1 OS=Homo sapiens GN=DESI1 PE=1 SV=1
Length = 168
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 46 GIFHSGIEAHGLEYGFGAHEYRT---SGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRS 102
GI+H+ I H E+ FG+ + G P S V +G+T ++ F
Sbjct: 35 GIWHTSIVVHKDEFFFGSGGISSCPPGGTLLGPPDSV--------VDVGSTEVTEEIFLE 86
Query: 103 FMEHLSGK-YHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMAR---LGSFCNCLLP 158
++ L + G+ Y+L NCN F+ EV LTG+ IP ++ + F L P
Sbjct: 87 YLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRP 146
Query: 159 --ESIQI 163
+SIQI
Sbjct: 147 LLDSIQI 153
>sp|Q6GLM5|DESI1_XENLA Desumoylating isopeptidase 1 OS=Xenopus laevis GN=desi1 PE=2 SV=1
Length = 169
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 90 LGTTNLSRAEFRSFMEHL-SGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMAR 148
LG T ++ F ++ L + G++YHL NCN F+ EV LTGK IP ++ +
Sbjct: 75 LGITEVTEEIFLEYLSSLGESGFSGESYHLFDHNCNTFSNEVAQFLTGKKIPSYITELPS 134
Query: 149 ------LGSFCNCLLPESIQI 163
LG LL +S+QI
Sbjct: 135 EVLSTPLGQALRPLL-DSVQI 154
>sp|B7IE30|SYD_THEAB Aspartate--tRNA ligase OS=Thermosipho africanus (strain TCF52B)
GN=aspS PE=3 SV=1
Length = 581
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 129 EVCMQLTGK--CIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSVPRDLG 182
E+ ++ GK + GWV+R+ LG +L + +T V P+ P Y + + +G
Sbjct: 9 ELNIKDVGKKVVLSGWVDRIRDLGGIKFIILRDRYGVTQVVVNPESPAYEISQKIG 64
>sp|Q27958|DPOLB_BOVIN DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3
Length = 335
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 33 LTPLNNY----LYWFGLGIFHSGIEAHGLEYGFGAHEY--RTSGVFEVEPKSCP 80
L P + Y LY+ G IF+ + AH LE GF +EY R GV V + P
Sbjct: 259 LIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLP 312
>sp|P06766|DPOLB_RAT DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4
Length = 335
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 33 LTPLNNY----LYWFGLGIFHSGIEAHGLEYGFGAHEY--RTSGVFEVEPKSCP 80
L P + Y LY+ G IF+ + AH LE GF +EY R GV V + P
Sbjct: 259 LIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLP 312
>sp|P06746|DPOLB_HUMAN DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3
Length = 335
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 33 LTPLNNY----LYWFGLGIFHSGIEAHGLEYGFGAHEY--RTSGVFEVEPKSCP 80
L P + Y LY+ G IF+ + AH LE GF +EY R GV V + P
Sbjct: 259 LIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLP 312
>sp|Q8K409|DPOLB_MOUSE DNA polymerase beta OS=Mus musculus GN=Polb PE=2 SV=3
Length = 335
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 33 LTPLNNY----LYWFGLGIFHSGIEAHGLEYGFGAHEY--RTSGVFEVEPKSCP 80
L P + Y LY+ G IF+ + AH LE GF +EY R GV V + P
Sbjct: 259 LIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLP 312
>sp|P61135|CO6_PONPY Complement component C6 OS=Pongo pygmaeus GN=C6 PE=2 SV=1
Length = 934
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 26 LYLNVYDLTPL--NNYLYW-----FGLGIFHSGI--EAHGLEYGFGAHEYRTSGVFEVEP 76
++L + PL N+ LY FG F SG + L Y F + E + SG+ E E
Sbjct: 337 IFLKALNHLPLEYNSALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEA 396
Query: 77 KSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHG 113
K C ++ VL ++ E R LS K+ G
Sbjct: 397 KHCVRIETKKRVLFAKK--TKVEHRCTTNKLSEKHEG 431
>sp|P13671|CO6_HUMAN Complement component C6 OS=Homo sapiens GN=C6 PE=1 SV=3
Length = 934
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 26 LYLNVYDLTPL--NNYLYW-----FGLGIFHSGI--EAHGLEYGFGAHEYRTSGVFEVEP 76
++L + PL N+ LY FG F SG + L Y F + E + SG+ E E
Sbjct: 337 VFLKALNHLPLEYNSALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEA 396
Query: 77 KSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHG 113
K C ++ VL ++ E R LS K+ G
Sbjct: 397 KHCVRIETKKRVLFAKK--TKVEHRCTTNKLSEKHEG 431
>sp|P61134|CO6_PANTR Complement component C6 OS=Pan troglodytes GN=C6 PE=2 SV=1
Length = 934
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 26 LYLNVYDLTPL--NNYLYW-----FGLGIFHSGI--EAHGLEYGFGAHEYRTSGVFEVEP 76
++L + PL N+ LY FG F SG + L Y F + E + SG+ E E
Sbjct: 337 VFLKALNHLPLEYNSALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEA 396
Query: 77 KSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHG 113
K C ++ VL ++ E R LS K+ G
Sbjct: 397 KHCVRIETKKRVLF--VKKTKVEHRCTTNKLSEKHEG 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,736,138
Number of Sequences: 539616
Number of extensions: 3153969
Number of successful extensions: 5680
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5650
Number of HSP's gapped (non-prelim): 25
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)