Query 029056
Match_columns 200
No_of_seqs 158 out of 461
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 8.8E-57 1.9E-61 382.4 13.6 158 22-179 12-171 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 1.1E-47 2.3E-52 311.7 10.3 136 24-159 1-149 (151)
3 PF04970 LRAT: Lecithin retino 94.8 0.011 2.3E-07 46.0 0.8 35 94-130 85-119 (125)
4 PF05608 DUF778: Protein of un 93.3 0.23 5E-06 40.5 5.7 40 96-135 75-114 (136)
5 PF09601 DUF2459: Protein of u 72.0 4.7 0.0001 33.7 3.5 42 94-136 97-161 (173)
6 KOG2673 Uncharacterized conser 70.2 4.1 9E-05 39.3 3.1 44 127-176 186-231 (485)
7 PF13387 DUF4105: Domain of un 59.6 13 0.00028 30.6 3.7 53 88-140 98-154 (176)
8 PF04046 PSP: PSP; InterPro: 52.0 13 0.00028 25.3 2.1 26 126-151 5-32 (48)
9 smart00581 PSP proline-rich do 46.7 18 0.00038 25.3 2.2 25 127-151 10-36 (54)
10 PF11931 DUF3449: Domain of un 43.8 7.7 0.00017 33.5 0.0 22 136-157 85-106 (196)
11 PF08405 Calici_PP_N: Viral po 42.8 35 0.00076 31.8 4.1 94 47-156 22-120 (358)
12 TIGR02117 chp_urease_rgn conse 42.5 30 0.00064 29.9 3.4 40 93-133 126-189 (208)
13 PF15643 Tox-PL-2: Papain fold 40.4 21 0.00046 27.8 2.0 44 97-147 2-45 (100)
14 KOG3150 Uncharacterized conser 38.5 59 0.0013 27.6 4.4 56 82-137 74-132 (182)
15 PF04603 Mog1: Ran-interacting 38.5 10 0.00022 30.9 -0.0 28 149-176 5-33 (141)
16 cd02998 PDI_a_ERp38 PDIa famil 31.0 20 0.00042 25.3 0.4 45 99-143 35-80 (105)
17 PF13964 Kelch_6: Kelch motif 30.7 47 0.001 21.0 2.2 20 47-66 3-22 (50)
18 PF07646 Kelch_2: Kelch motif; 25.7 72 0.0016 20.3 2.4 17 48-64 4-20 (49)
19 PF12419 DUF3670: SNF2 Helicas 24.4 81 0.0018 25.1 2.9 27 82-108 71-97 (141)
20 PF04412 DUF521: Protein of un 24.0 74 0.0016 30.2 3.0 45 93-138 268-316 (400)
21 cd01781 AF6_RA_repeat2 Ubiquit 22.1 2.2E+02 0.0048 22.1 4.8 52 70-122 2-55 (100)
22 smart00460 TGc Transglutaminas 21.0 60 0.0013 21.4 1.4 23 121-143 7-29 (68)
23 TIGR01514 NAPRTase nicotinate 21.0 43 0.00093 31.7 0.8 43 98-140 46-89 (394)
24 PF01344 Kelch_1: Kelch motif; 20.4 99 0.0021 18.9 2.2 19 48-66 4-22 (47)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.8e-57 Score=382.35 Aligned_cols=158 Identities=57% Similarity=1.097 Sum_probs=152.1
Q ss_pred CcceEEEEEeeCCCcchhhhhhcceeeeeeEEEeCeEEEeccccCCCCCeEEeCCCCCCCCceEEEEEeccccCCHHHHH
Q 029056 22 NHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFR 101 (200)
Q Consensus 22 ~~~~V~LnVYDLs~~n~~l~~lG~GI~HTgVeV~G~EY~FG~~~~~~sGI~~~~P~~~pg~~~r~si~LG~T~lt~~e~~ 101 (200)
...+|+|||||+++.|.|++|+|+|||||||||||+||+||+|+++.+|||+++|+.+|+++||++|.||.|++++++|+
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~ 91 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR 91 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHHhhhh--ccccccCCccccccccccCCCCCCCCCCC
Q 029056 102 SFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLG--SFCNCLLPESIQITAVAHLPDRPTYSVPR 179 (200)
Q Consensus 102 ~~l~~L~~~f~g~tY~LL~rNCNHFsd~l~~~L~gk~IP~wInrla~iG--~~~~cllp~~~~~~~v~~~~~~~~~~~~~ 179 (200)
+||++|+++|+|++||||.|||||||+++|++|+||+||+||||||++| .+++|++|.....+++.+.+...+..+++
T Consensus 92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~~~~~~~~ 171 (214)
T KOG0324|consen 92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSVVERFDEE 171 (214)
T ss_pred HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCccccccccccccCcc
Confidence 9999999999999999999999999999999999999999999999999 88899999999999999888877766554
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=1.1e-47 Score=311.71 Aligned_cols=136 Identities=51% Similarity=0.984 Sum_probs=105.1
Q ss_pred ceEEEEEeeCCCcch------hhhhhcc---eeeeeeEEEeCeEEEeccccCCCCCeEEeCCCC-CCCCceEEEEEeccc
Q 029056 24 ALLYLNVYDLTPLNN------YLYWFGL---GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKS-CPGFIFRRSVLLGTT 93 (200)
Q Consensus 24 ~~V~LnVYDLs~~n~------~l~~lG~---GI~HTgVeV~G~EY~FG~~~~~~sGI~~~~P~~-~pg~~~r~si~LG~T 93 (200)
.+|+||||||++.|. ...++|. |||||||||+|+||+||+++.+.+||++++|++ .+++.|++++.||+|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T 80 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGET 80 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-STT--S-SEEEEEEEE
T ss_pred CeEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCCCCCcceEEEEeCCCc
Confidence 489999999996654 4568998 999999999999999999999889999999998 788899999999999
Q ss_pred cCCHHHHHHHHHHhccCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHHhhhhc---cccccCCc
Q 029056 94 NLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 159 (200)
Q Consensus 94 ~lt~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFsd~l~~~L~gk~IP~wInrla~iG~---~~~cllp~ 159 (200)
.+++++|+++|++|+++|++++||||.|||||||++||++|+|++||+||||+|+++. +..|++|.
T Consensus 81 ~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~~p~~~~l~p~ 149 (151)
T PF05903_consen 81 TLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALSSPFGQMLLPM 149 (151)
T ss_dssp ---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHCC-
T ss_pred cCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcccchhhhhCcC
Confidence 9999999999999999999999999999999999999999999999999999999887 56788875
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=94.84 E-value=0.011 Score=45.98 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHhccCCCCCcccccccccchHHHHH
Q 029056 94 NLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEV 130 (200)
Q Consensus 94 ~lt~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFsd~l 130 (200)
..+.+++.+-.+++-.+ ...|||+.+||=||+.-.
T Consensus 85 ~~~~~~iv~rA~~~lg~--~~~Y~l~~nNCEhFa~~c 119 (125)
T PF04970_consen 85 PFPPEEIVERAESRLGK--EFEYNLLFNNCEHFATWC 119 (125)
T ss_dssp -S-HHHHHHHHHHTTT---EESS---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CCccCCCcCCHHHHHHHH
Confidence 44445544433333221 338999999999998754
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=93.28 E-value=0.23 Score=40.45 Aligned_cols=40 Identities=18% Similarity=0.440 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhccCCCCCcccccccccchHHHHHHHHhc
Q 029056 96 SRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLT 135 (200)
Q Consensus 96 t~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFsd~l~~~L~ 135 (200)
+.+..++.|++-.++|....|||+..||.+|...+...|.
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 5667777888888999999999999999999988877764
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=71.98 E-value=4.7 Score=33.75 Aligned_cols=42 Identities=24% Similarity=0.499 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhccCCCCC-----------------------cccccccccchHHHHHHHHhcC
Q 029056 94 NLSRAEFRSFMEHLSGKYHGD-----------------------TYHLIAKNCNHFTEEVCMQLTG 136 (200)
Q Consensus 94 ~lt~~e~~~~l~~L~~~f~g~-----------------------tY~LL~rNCNHFsd~l~~~L~g 136 (200)
.+++++++++++.++..|.-+ +|||+ ++||+-+++..+...-
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG~ 161 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAGL 161 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcCC
Confidence 679999999998887655543 36654 7999999998776543
No 6
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=70.21 E-value=4.1 Score=39.34 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=34.5
Q ss_pred HHHHHHHh--cCCCCChHHHHHhhhhccccccCCccccccccccCCCCCCCC
Q 029056 127 TEEVCMQL--TGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYS 176 (200)
Q Consensus 127 sd~l~~~L--~gk~IP~wInrla~iG~~~~cllp~~~~~~~v~~~~~~~~~~ 176 (200)
+..+..+| .+..||.|++|+-++| .|+.+...+.++++...-|+
T Consensus 186 S~~~R~al~l~~~d~P~~~yRMR~lG------YPPg~L~~s~~e~s~i~if~ 231 (485)
T KOG2673|consen 186 SGNTRSALGLSPGDPPEWKYRMRRLG------YPPGYLRKSDMEVSGIKIFS 231 (485)
T ss_pred chhHHHhhcCCCCCchHHHHHHhhcc------CCchhhhhhhcccccceeec
Confidence 34444444 4689999999999999 78887778889988887777
No 7
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=59.57 E-value=13 Score=30.57 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=40.4
Q ss_pred EEeccccCCHHHHHHHHHHhcc----CCCCCcccccccccchHHHHHHHHhcCCCCC
Q 029056 88 VLLGTTNLSRAEFRSFMEHLSG----KYHGDTYHLIAKNCNHFTEEVCMQLTGKCIP 140 (200)
Q Consensus 88 i~LG~T~lt~~e~~~~l~~L~~----~f~g~tY~LL~rNCNHFsd~l~~~L~gk~IP 140 (200)
|..=...++++|.+.++..|.+ .-++-.||.+..||=.-.-++.....++.+|
T Consensus 98 v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~ 154 (176)
T PF13387_consen 98 VWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLP 154 (176)
T ss_pred EEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCee
Confidence 3333458899999999887743 2355699999999999998888888876444
No 8
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=51.99 E-value=13 Score=25.28 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=21.2
Q ss_pred HHHHHHHHhc--CCCCChHHHHHhhhhc
Q 029056 126 FTEEVCMQLT--GKCIPGWVNRMARLGS 151 (200)
Q Consensus 126 Fsd~l~~~L~--gk~IP~wInrla~iG~ 151 (200)
.|+++.++|. ...+|.||.++.++|-
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G~ 32 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLGY 32 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcCC
Confidence 4677888875 4679999999999983
No 9
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=46.66 E-value=18 Score=25.26 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=20.7
Q ss_pred HHHHHHHhc--CCCCChHHHHHhhhhc
Q 029056 127 TEEVCMQLT--GKCIPGWVNRMARLGS 151 (200)
Q Consensus 127 sd~l~~~L~--gk~IP~wInrla~iG~ 151 (200)
|+++.++|. ...+|.|+.++.++|-
T Consensus 10 S~~LR~ALG~~~~~pPPWl~~Mq~~G~ 36 (54)
T smart00581 10 SDELREALGLPPGQPPPWLYRMRRLGY 36 (54)
T ss_pred CHHHHHHcCCCCCCCChHHHHHHHHCC
Confidence 678888886 3579999999999984
No 10
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=43.81 E-value=7.7 Score=33.49 Aligned_cols=22 Identities=36% Similarity=0.759 Sum_probs=0.0
Q ss_pred CCCCChHHHHHhhhhccccccC
Q 029056 136 GKCIPGWVNRMARLGSFCNCLL 157 (200)
Q Consensus 136 gk~IP~wInrla~iG~~~~cll 157 (200)
|||||-|+-.|.-++.-+.|=|
T Consensus 85 GkPIPyWLYKLhGL~~ey~CEI 106 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKCEI 106 (196)
T ss_dssp ----------------------
T ss_pred CCcccHHHHHHhCCCCeeeeEe
Confidence 7999999999999988777754
No 11
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=42.75 E-value=35 Score=31.82 Aligned_cols=94 Identities=28% Similarity=0.433 Sum_probs=53.0
Q ss_pred eeeeeEEEeCeEEEeccccCC---CCCeEEeCCCCCCCCceEEEEEeccccCCHHHHHHHHHHhccCCCCCccccccccc
Q 029056 47 IFHSGIEAHGLEYGFGAHEYR---TSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNC 123 (200)
Q Consensus 47 I~HTgVeV~G~EY~FG~~~~~---~sGI~~~~P~~~pg~~~r~si~LG~T~lt~~e~~~~l~~L~~~f~g~tY~LL~rNC 123 (200)
+||-||-|. +-+.+|-|.-+ +.|-+..+|=+.+ =+.+..-+-.++.+++++.+ .++| -|..+.+||
T Consensus 22 ~yHYaIYi~-~G~~lgvh~p~aai~~a~i~l~~ls~~----WRvvy~P~~~~~~~~L~~l~---ge~~---PY~a~~nNC 90 (358)
T PF08405_consen 22 IYHYAIYIG-KGLVLGVHSPGAAISIATIELEPLSLW----WRVVYTPRQRLSYDQLRKLE---GEKF---PYAAFTNNC 90 (358)
T ss_pred eEEEEEEec-CCeEEeecCcchhceeeeEEEeecccc----cccccCCCCCCCHHHHHHhc---CCCC---Cchhhccch
Confidence 999999864 45677766432 2344455554433 11222222355666644432 3455 489999999
Q ss_pred chHHHHHHHHhcCCCCChHHHHH--hhhhcccccc
Q 029056 124 NHFTEEVCMQLTGKCIPGWVNRM--ARLGSFCNCL 156 (200)
Q Consensus 124 NHFsd~l~~~L~gk~IP~wInrl--a~iG~~~~cl 156 (200)
=||| |+-|.-+. .|++|- ++-|.|..+.
T Consensus 91 y~fc---c~vl~L~D--~wl~rr~v~r~~~F~~P~ 120 (358)
T PF08405_consen 91 YTFC---CWVLGLND--SWLKRRLVSRTGPFYHPY 120 (358)
T ss_pred HHHh---HhhcCCCh--HHHhhccccccCCCCCCC
Confidence 9999 66553221 366653 3456655543
No 12
>TIGR02117 chp_urease_rgn conserved hypothetical protein. This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=42.46 E-value=30 Score=29.88 Aligned_cols=40 Identities=18% Similarity=0.445 Sum_probs=27.4
Q ss_pred ccCCHHHHHHHHHHhccCCCC------------------------CcccccccccchHHHHHHHH
Q 029056 93 TNLSRAEFRSFMEHLSGKYHG------------------------DTYHLIAKNCNHFTEEVCMQ 133 (200)
Q Consensus 93 T~lt~~e~~~~l~~L~~~f~g------------------------~tY~LL~rNCNHFsd~l~~~ 133 (200)
..+++++++++++.+++.|.- ..|||+ ++||+-+.+..+.
T Consensus 126 l~vs~~qy~~L~~~I~~sf~~~~~g~~~~l~~~~yg~~d~Fy~A~G~Y~l~-~TCNtWta~aL~a 189 (208)
T TIGR02117 126 LLVSENQYNRLMDFISASFVRDAEGRVIPLPGGIYGDSDAFYAANGRYNAL-NTCNTWTAAALRS 189 (208)
T ss_pred EEcCHHHHHHHHHHHHHhcCcCCCCCceecCCCCCCCCceeEeeeeeEEee-ccchHHHHHHHHH
Confidence 378899999888766532221 125654 7999999987664
No 13
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=40.45 E-value=21 Score=27.80 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhccCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHHh
Q 029056 97 RAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMA 147 (200)
Q Consensus 97 ~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFsd~l~~~L~gk~IP~wInrla 147 (200)
+.+++..|..++.+|. ---|--|++++.++|..++||..+-+|-
T Consensus 2 ~~~~~Q~I~~I~~~f~-------~~qC~~cA~Al~~~L~~~gI~Gk~i~l~ 45 (100)
T PF15643_consen 2 PAEVRQQIGKIASRFK-------IFQCVECASALKQFLKQAGIPGKIIRLY 45 (100)
T ss_pred HHHHHHHHHHhhcccC-------ceehHHHHHHHHHHHHHCCCCceEEEEE
Confidence 5678888888888874 3469999999999999999999887774
No 14
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.49 E-value=59 Score=27.64 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=40.9
Q ss_pred CceEEEEEeccccC---CHHHHHHHHHHhccCCCCCcccccccccchHHHHHHHHhcCC
Q 029056 82 FIFRRSVLLGTTNL---SRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGK 137 (200)
Q Consensus 82 ~~~r~si~LG~T~l---t~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFsd~l~~~L~gk 137 (200)
+.+-+-+.|+.+.. .+...++.+++-+++|...+|||+--||..|-.-...+|.=+
T Consensus 74 G~paRY~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~ 132 (182)
T KOG3150|consen 74 GPPARYIQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYG 132 (182)
T ss_pred CCcceeEEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcC
Confidence 33444455554432 456777888988999999999999999999987766666533
No 15
>PF04603 Mog1: Ran-interacting Mog1 protein; InterPro: IPR007681 Segregation of nuclear and cytoplasmic processes facilitates regulation of many eukaryotic cellular functions such as gene expression and cell cycle progression. Trafficking through the nuclear pore requires a number of highly conserved soluble factors that escort macromolecular substrates into and out of the nucleus. The Mog1 protein has been shown to interact with RanGTP, which stimulates guanine nucleotide release, suggesting Mog1 regulates the nuclear transport functions of Ran []. The human homologue of Mog1 is thought to be alternatively spliced.; PDB: 1JHS_A 1EQ6_A.
Probab=38.45 E-value=10 Score=30.88 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=19.0
Q ss_pred hhccccccCCcccc-ccccccCCCCCCCC
Q 029056 149 LGSFCNCLLPESIQ-ITAVAHLPDRPTYS 176 (200)
Q Consensus 149 iG~~~~cllp~~~~-~~~v~~~~~~~~~~ 176 (200)
.|-++.|.||..++ ++.+|+.||.+|.=
T Consensus 5 yGGAi~~~lP~~f~DvS~~RqVPD~QEVf 33 (141)
T PF04603_consen 5 YGGAITCDLPSGFIDVSDFRQVPDNQEVF 33 (141)
T ss_dssp GGGTEEEEE-TTEEEGGGTS---TTEEEE
T ss_pred cCceEEEeCCCCccchhhceeCCCCCEEe
Confidence 46778899998854 89999999998753
No 16
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=31.00 E-value=20 Score=25.28 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=33.6
Q ss_pred HHHHHHHHhccCCC-CCcccccccccchHHHHHHHHhcCCCCChHH
Q 029056 99 EFRSFMEHLSGKYH-GDTYHLIAKNCNHFTEEVCMQLTGKCIPGWV 143 (200)
Q Consensus 99 e~~~~l~~L~~~f~-g~tY~LL~rNCNHFsd~l~~~L~gk~IP~wI 143 (200)
++...++.+++.+. ...+.++.=||+....++|+.+....+|..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 35 NLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred hhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 44556666666665 3467888899999767889999888888854
No 17
>PF13964 Kelch_6: Kelch motif
Probab=30.71 E-value=47 Score=21.04 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.3
Q ss_pred eeeeeEEEeCeEEEeccccC
Q 029056 47 IFHSGIEAHGLEYGFGAHEY 66 (200)
Q Consensus 47 I~HTgVeV~G~EY~FG~~~~ 66 (200)
..|+.+.+.|+-|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36888999999999998643
No 18
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=25.71 E-value=72 Score=20.25 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.1
Q ss_pred eeeeEEEeCeEEEeccc
Q 029056 48 FHSGIEAHGLEYGFGAH 64 (200)
Q Consensus 48 ~HTgVeV~G~EY~FG~~ 64 (200)
-|+.+++.++-|-|||.
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 38889999999999986
No 19
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=24.38 E-value=81 Score=25.13 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.7
Q ss_pred CceEEEEEeccccCCHHHHHHHHHHhc
Q 029056 82 FIFRRSVLLGTTNLSRAEFRSFMEHLS 108 (200)
Q Consensus 82 ~~~r~si~LG~T~lt~~e~~~~l~~L~ 108 (200)
..|+=++.||...+|++||+++++.=+
T Consensus 71 ~~f~W~lalGd~~Ls~eEf~~L~~~~~ 97 (141)
T PF12419_consen 71 LDFDWELALGDEELSEEEFEQLVEQKR 97 (141)
T ss_pred hcceEEEEECCEECCHHHHHHHHHcCC
Confidence 568889999999999999999997544
No 20
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=24.03 E-value=74 Score=30.20 Aligned_cols=45 Identities=22% Similarity=0.456 Sum_probs=36.8
Q ss_pred ccCCHHHHHHHHHHhccCCCCCcccccccccchHH----HHHHHHhcCCC
Q 029056 93 TNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFT----EEVCMQLTGKC 138 (200)
Q Consensus 93 T~lt~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFs----d~l~~~L~gk~ 138 (200)
..++.+++++..+++. .-..+.-|++.=-|+||| .++++.|-||+
T Consensus 268 i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 268 ITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRK 316 (400)
T ss_pred EEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3668899999999987 666778899999999999 55677777765
No 21
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=22.06 E-value=2.2e+02 Score=22.07 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=37.0
Q ss_pred CeEEeCCCCC-CCCceEEEEEeccccCCHHHHHHHHHHhc-cCCCCCcccccccc
Q 029056 70 GVFEVEPKSC-PGFIFRRSVLLGTTNLSRAEFRSFMEHLS-GKYHGDTYHLIAKN 122 (200)
Q Consensus 70 GI~~~~P~~~-pg~~~r~si~LG~T~lt~~e~~~~l~~L~-~~f~g~tY~LL~rN 122 (200)
|+..+-|+.. |+..| ++|.+-..+.+++-+.+.|++.. ++-.++.|.|..-+
T Consensus 2 G~LKIYg~~L~~~~~Y-KSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~ 55 (100)
T cd01781 2 GTLKIYGGSLVPTRPY-KTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVS 55 (100)
T ss_pred CeEEEcCCcccCCCCe-EEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEe
Confidence 4455555543 44444 79999999999999999998775 55667788776543
No 22
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=21.01 E-value=60 Score=21.41 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred cccchHHHHHHHHhcCCCCChHH
Q 029056 121 KNCNHFTEEVCMQLTGKCIPGWV 143 (200)
Q Consensus 121 rNCNHFsd~l~~~L~gk~IP~wI 143 (200)
-+|.+|+..++..|-..+||.-+
T Consensus 7 G~C~~~a~l~~~llr~~GIpar~ 29 (68)
T smart00460 7 GTCGEFAALFVALLRSLGIPARV 29 (68)
T ss_pred eeeHHHHHHHHHHHHHCCCCeEE
Confidence 47999999999999999999844
No 23
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=20.99 E-value=43 Score=31.73 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcc-CCCCCcccccccccchHHHHHHHHhcCCCCC
Q 029056 98 AEFRSFMEHLSG-KYHGDTYHLIAKNCNHFTEEVCMQLTGKCIP 140 (200)
Q Consensus 98 ~e~~~~l~~L~~-~f~g~tY~LL~rNCNHFsd~l~~~L~gk~IP 140 (200)
.++++.|+.|.. .|+.+...-|++||+.|.+++..+|-+-+++
T Consensus 46 ~gl~~~i~~l~~l~ft~eel~yL~~~~~~~~~~fl~~L~~frf~ 89 (394)
T TIGR01514 46 EALREEISALGNLRFTDDEIEYLKQELPYLKSDYIDYLRNFRFH 89 (394)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHhccCCCCHHHHHHHHhCCCC
Confidence 688888988875 8999999999999999999999999876654
No 24
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=20.35 E-value=99 Score=18.93 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=15.8
Q ss_pred eeeeEEEeCeEEEeccccC
Q 029056 48 FHSGIEAHGLEYGFGAHEY 66 (200)
Q Consensus 48 ~HTgVeV~G~EY~FG~~~~ 66 (200)
.|+.+.+.++=|-+||...
T Consensus 4 ~~~~~~~~~~iyv~GG~~~ 22 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDG 22 (47)
T ss_dssp SEEEEEETTEEEEEEEBES
T ss_pred cCEEEEECCEEEEEeeecc
Confidence 5788888999999998654
Done!