Query 029056
Match_columns 200
No_of_seqs 158 out of 461
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 7.2E-52 2.4E-56 342.0 12.2 132 23-159 6-150 (168)
2 4dot_A Group XVI phospholipase 92.5 0.051 1.7E-06 43.1 2.1 18 114-131 104-121 (140)
3 4dpz_X HRAS-like suppressor 2; 92.3 0.041 1.4E-06 43.5 1.3 18 114-131 104-121 (137)
4 2lkt_A Retinoic acid receptor 92.2 0.046 1.6E-06 41.4 1.4 16 115-130 105-120 (125)
5 1eq6_A MOG1P; alpha-beta, prot 46.6 5 0.00017 32.9 0.5 27 149-175 10-37 (189)
6 1fme_A FSD-EY peptide; beta-BE 23.2 57 0.0019 18.7 2.2 21 89-109 7-27 (28)
7 1rpq_W Peptide E131; receptor- 21.4 23 0.00077 20.1 0.2 13 122-134 2-14 (26)
8 2nz0_B Potassium voltage-gated 17.7 91 0.0031 23.9 3.1 16 94-109 80-95 (140)
9 1f9y_A HPPK, protein (6-hydrox 14.6 2.3E+02 0.0079 22.2 4.8 49 69-117 37-95 (158)
10 2wj8_A Nucleoprotein; RNA bind 14.5 1.1E+02 0.0037 27.5 3.1 33 98-132 285-326 (391)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=7.2e-52 Score=341.96 Aligned_cols=132 Identities=30% Similarity=0.482 Sum_probs=124.4
Q ss_pred cceEEEEEeeCCCcc-hhh--hhhcc---eeeeeeEEEeCeEEEeccccCCCCCeEEeCCCCCCCCceEEEEEeccccCC
Q 029056 23 HALLYLNVYDLTPLN-NYL--YWFGL---GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLS 96 (200)
Q Consensus 23 ~~~V~LnVYDLs~~n-~~l--~~lG~---GI~HTgVeV~G~EY~FG~~~~~~sGI~~~~P~~~pg~~~r~si~LG~T~lt 96 (200)
+.+|+||||||++++ +.+ .|+|+ |||||||||||+||+||+ +||++++|+.++.++||++|.||+|.++
T Consensus 6 ~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~~ 80 (168)
T 2wp7_A 6 LYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVT 80 (168)
T ss_dssp CEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECCC
T ss_pred CcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccCC
Confidence 489999999999974 343 47997 999999999999999996 6999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CCCCcccccccccchHHHHHHHHhcCCCCChHHHHHhh------hhccccccCCc
Q 029056 97 RAEFRSFMEHLSGK-YHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMAR------LGSFCNCLLPE 159 (200)
Q Consensus 97 ~~e~~~~l~~L~~~-f~g~tY~LL~rNCNHFsd~l~~~L~gk~IP~wInrla~------iG~~~~cllp~ 159 (200)
+++|+++|++|+++ |++++||||.||||||||++|++|+||+||+||||||+ +|.+++|+|+.
T Consensus 81 ~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l~~~l~~ 150 (168)
T 2wp7_A 81 EEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDS 150 (168)
T ss_dssp HHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999998 79999999954
No 2
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=92.53 E-value=0.051 Score=43.12 Aligned_cols=18 Identities=39% Similarity=0.800 Sum_probs=15.9
Q ss_pred CcccccccccchHHHHHH
Q 029056 114 DTYHLIAKNCNHFTEEVC 131 (200)
Q Consensus 114 ~tY~LL~rNCNHFsd~l~ 131 (200)
..|+||.+||-||+..+.
T Consensus 104 ~~Y~ll~nNCEHFvt~cr 121 (140)
T 4dot_A 104 VLYKLTSENCEHFVNELR 121 (140)
T ss_dssp CSSCCCHHHHHHHHHHHH
T ss_pred ccccccccChHHHHHHHh
Confidence 699999999999998753
No 3
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=92.28 E-value=0.041 Score=43.45 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=10.7
Q ss_pred CcccccccccchHHHHHH
Q 029056 114 DTYHLIAKNCNHFTEEVC 131 (200)
Q Consensus 114 ~tY~LL~rNCNHFsd~l~ 131 (200)
..|+||.+||.||+..+.
T Consensus 104 ~~Y~ll~nNCEHFvt~cr 121 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHLR 121 (137)
T ss_dssp EC-----CHHHHHHHHHH
T ss_pred cccCcCccChHHHHHHHh
Confidence 489999999999998754
No 4
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=92.17 E-value=0.046 Score=41.43 Aligned_cols=16 Identities=31% Similarity=1.041 Sum_probs=14.0
Q ss_pred cccccccccchHHHHH
Q 029056 115 TYHLIAKNCNHFTEEV 130 (200)
Q Consensus 115 tY~LL~rNCNHFsd~l 130 (200)
.||||.+||=||+..+
T Consensus 105 ~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 105 KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CcCCCccCHHHHHhhh
Confidence 6999999999998653
No 5
>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A
Probab=46.62 E-value=5 Score=32.95 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.7
Q ss_pred hhccccccCCccc-cccccccCCCCCCC
Q 029056 149 LGSFCNCLLPESI-QITAVAHLPDRPTY 175 (200)
Q Consensus 149 iG~~~~cllp~~~-~~~~v~~~~~~~~~ 175 (200)
.|-++.|.||..+ .++.+|++||.+|.
T Consensus 10 fGGAI~~~lP~~f~DvS~lRqVPDnQEV 37 (189)
T 1eq6_A 10 YGGAITTVVPPGFIDASTLREVPDTQEV 37 (189)
T ss_dssp GGGTEEEEECTTEEEGGGTSCCCTTEEE
T ss_pred cCceEEeeCCCCccchhhcccCCCCcEE
Confidence 4677889999985 48999999999974
No 6
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=23.21 E-value=57 Score=18.68 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=16.8
Q ss_pred EeccccCCHHHHHHHHHHhcc
Q 029056 89 LLGTTNLSRAEFRSFMEHLSG 109 (200)
Q Consensus 89 ~LG~T~lt~~e~~~~l~~L~~ 109 (200)
.-|.|-..+.|+++||+.++.
T Consensus 7 ykgrtfrnekelrdfiekfkg 27 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKFKG 27 (28)
T ss_dssp SSSCEECCHHHHHHHHHHCCC
T ss_pred hcccccccHHHHHHHHHHhcC
Confidence 347788889999999997653
No 7
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=21.37 E-value=23 Score=20.07 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=9.0
Q ss_pred ccchHHHHHHHHh
Q 029056 122 NCNHFTEEVCMQL 134 (200)
Q Consensus 122 NCNHFsd~l~~~L 134 (200)
.|.||+-++-..|
T Consensus 2 qcphfcyeldyel 14 (26)
T 1rpq_W 2 QCPHFCYELDYEL 14 (26)
T ss_dssp CCCTHHHHSSSCC
T ss_pred CCCeeeeecCccc
Confidence 5999998754443
No 8
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=17.65 E-value=91 Score=23.93 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHHhcc
Q 029056 94 NLSRAEFRSFMEHLSG 109 (200)
Q Consensus 94 ~lt~~e~~~~l~~L~~ 109 (200)
+.++.-|+-||+=|+.
T Consensus 80 DRdp~~F~~ILnflR~ 95 (140)
T 2nz0_B 80 DRDPEVFRCVLNFYRT 95 (140)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHhc
Confidence 4567888888877764
No 9
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=14.57 E-value=2.3e+02 Score=22.21 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=34.9
Q ss_pred CCeEEeCCCCC-CCCceEEEEEeccccCCHHHHHHHHHHhc---------cCCCCCccc
Q 029056 69 SGVFEVEPKSC-PGFIFRRSVLLGTTNLSRAEFRSFMEHLS---------GKYHGDTYH 117 (200)
Q Consensus 69 sGI~~~~P~~~-pg~~~r~si~LG~T~lt~~e~~~~l~~L~---------~~f~g~tY~ 117 (200)
|.+++++|--. ....|--.+....|.+++.++.+.+.++. .+|.+-+-|
T Consensus 37 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~GR~r~~~~~gpRtlD 95 (158)
T 1f9y_A 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLD 95 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHTTCCCCSSTTCCCSCE
T ss_pred CCeEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHHhCCCCCCCCCCCceEe
Confidence 57777777432 34467778888899999999999887662 346666554
No 10
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=14.52 E-value=1.1e+02 Score=27.47 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccCCCCCcccccc---------cccchHHHHHHH
Q 029056 98 AEFRSFMEHLSGKYHGDTYHLIA---------KNCNHFTEEVCM 132 (200)
Q Consensus 98 ~e~~~~l~~L~~~f~g~tY~LL~---------rNCNHFsd~l~~ 132 (200)
.|+.+++++|..+ ..-|||.. -||+||+.-+.-
T Consensus 285 ~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLG 326 (391)
T 2wj8_A 285 VEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp HHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheec
Confidence 3566777777643 23355544 599999976543
Done!