Query 029056
Match_columns 200
No_of_seqs 158 out of 461
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 10:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029056.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029056hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jhsa_ d.107.1.1 (A:) Ran-bin 49.0 2 0.00015 33.2 0.5 27 149-175 9-36 (188)
2 d1vlpa1 d.41.2.2 (A:1-149) Nic 40.9 2.6 0.00019 31.4 -0.1 43 97-139 50-93 (149)
3 d2fhfa1 b.1.18.2 (A:288-402) P 23.6 22 0.0016 24.2 2.4 43 20-62 25-73 (115)
4 d1wxaa1 d.15.1.5 (A:8-110) Afa 17.1 1.1E+02 0.0079 20.0 5.0 51 70-121 3-55 (103)
5 d1bf2a1 b.1.18.2 (A:1-162) Iso 14.6 50 0.0037 23.5 2.8 43 20-62 24-80 (162)
6 d1yira2 d.41.2.2 (A:4-144) Nic 12.9 19 0.0014 26.1 -0.1 41 98-139 53-94 (141)
7 d1cbka_ d.58.30.1 (A:) 6-hydro 10.7 1.7E+02 0.013 20.9 4.9 40 69-108 38-78 (160)
8 d1f9ya_ d.58.30.1 (A:) 6-hydro 10.2 1.9E+02 0.014 20.7 4.9 39 69-107 37-76 (158)
9 d1ldda_ a.4.5.34 (A:) Anaphase 8.9 1.1E+02 0.0083 19.7 2.8 26 94-119 44-74 (74)
10 d1ybea2 d.41.2.2 (A:8-167) Nic 8.1 47 0.0034 24.4 0.5 45 97-141 66-116 (160)
No 1
>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.00 E-value=2 Score=33.21 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=22.8
Q ss_pred hhccccccCCcc-ccccccccCCCCCCC
Q 029056 149 LGSFCNCLLPES-IQITAVAHLPDRPTY 175 (200)
Q Consensus 149 iG~~~~cllp~~-~~~~~v~~~~~~~~~ 175 (200)
.|-++.|.||.. +.++.+|+.||++|.
T Consensus 9 fGGAI~~~lP~~f~DvS~~RqVPDnQEV 36 (188)
T d1jhsa_ 9 YGGAITTVVPPGFIDASTLREVPDTQAV 36 (188)
T ss_dssp GGGTEEEEECTTEEEGGGTSCCCTTEEE
T ss_pred cCceEEEecCCCceeccccccCCCCcEE
Confidence 577888999987 458999999999974
No 2
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.92 E-value=2.6 Score=31.42 Aligned_cols=43 Identities=2% Similarity=0.069 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcc-CCCCCcccccccccchHHHHHHHHhcCCCC
Q 029056 97 RAEFRSFMEHLSG-KYHGDTYHLIAKNCNHFTEEVCMQLTGKCI 139 (200)
Q Consensus 97 ~~e~~~~l~~L~~-~f~g~tY~LL~rNCNHFsd~l~~~L~gk~I 139 (200)
...+++.|+.|+. +|+.+..+-|+.+|++|.+++..+|-+-+.
T Consensus 50 ~~gl~~~i~~l~~lrFt~eel~yL~~~~~~~~~~fl~~L~~~rF 93 (149)
T d1vlpa1 50 INWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNY 93 (149)
T ss_dssp HHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHcCCCCCHHHHHHHHhCCc
Confidence 3578888888876 999999999999999999999999987443
No 3
>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}
Probab=23.56 E-value=22 Score=24.21 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=28.2
Q ss_pred CCCcceEEEEEeeCCCcchhhh--h--hcceeeeeeEE--EeCeEEEec
Q 029056 20 GSNHALLYLNVYDLTPLNNYLY--W--FGLGIFHSGIE--AHGLEYGFG 62 (200)
Q Consensus 20 ~~~~~~V~LnVYDLs~~n~~l~--~--lG~GI~HTgVe--V~G~EY~FG 62 (200)
......|.|.+||=........ . -.-|+||.-|+ ..|..|.|-
T Consensus 25 AP~A~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G~~Y~y~ 73 (115)
T d2fhfa1 25 APTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAFYRYA 73 (115)
T ss_dssp CTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCEEEEE
T ss_pred CCCCCEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCCCEEEEE
Confidence 4566889999998654321111 1 12499999986 457778774
No 4
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.08 E-value=1.1e+02 Score=19.96 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=36.6
Q ss_pred CeEEeCCCCC-CCCceEEEEEeccccCCHHHHHHHHHHhcc-CCCCCccccccc
Q 029056 70 GVFEVEPKSC-PGFIFRRSVLLGTTNLSRAEFRSFMEHLSG-KYHGDTYHLIAK 121 (200)
Q Consensus 70 GI~~~~P~~~-pg~~~r~si~LG~T~lt~~e~~~~l~~L~~-~f~g~tY~LL~r 121 (200)
|+..+-|+.. |+..| +++.+-.++-..+-+...|+++.- .=.+..|-|..-
T Consensus 3 G~lkVy~~~l~~~~~y-k~l~vs~~tTa~eVI~~~L~k~~l~~~~~~~y~L~ev 55 (103)
T d1wxaa1 3 GTLRIYADSLKPNIPY-KTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARV 55 (103)
T ss_dssp CEEEECCTTTCSSSCC-EEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEE
T ss_pred cEEEEEcCccCCCCCe-EEEEECCCCcHHHHHHHHHHHhCCCCCChhhEEEEEE
Confidence 7777777653 45555 588888888788888889998863 335778887653
No 5
>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}
Probab=14.65 E-value=50 Score=23.50 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCCcceEEEEEeeCCCcch-h--hh--hhcceeeeeeEEE---------eCeEEEec
Q 029056 20 GSNHALLYLNVYDLTPLNN-Y--LY--WFGLGIFHSGIEA---------HGLEYGFG 62 (200)
Q Consensus 20 ~~~~~~V~LnVYDLs~~n~-~--l~--~lG~GI~HTgVeV---------~G~EY~FG 62 (200)
+.....|.|.+||=..... . .. --.-||||.-|.. .|..|.|-
T Consensus 24 Ap~A~~V~L~ly~~~~~~~~~~~~~l~~~~~gvW~~~v~~~~~~~~g~~~G~~Y~yr 80 (162)
T d1bf2a1 24 SSQATRIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVYYGYR 80 (162)
T ss_dssp CSSCSEEEEEEESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCEEEEE
T ss_pred CCCCCEEEEEEEcCCCCCcceeEEEcccccccEEEEEecccccccccCCCCcEEEEE
Confidence 5567899999998654321 1 11 1235999987742 35677774
No 6
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.88 E-value=19 Score=26.07 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcc-CCCCCcccccccccchHHHHHHHHhcCCCC
Q 029056 98 AEFRSFMEHLSG-KYHGDTYHLIAKNCNHFTEEVCMQLTGKCI 139 (200)
Q Consensus 98 ~e~~~~l~~L~~-~f~g~tY~LL~rNCNHFsd~l~~~L~gk~I 139 (200)
..+++.|+.|+. +|+.+.-+.|+ +|+.|.+++..+|-+-++
T Consensus 53 ~gl~~~i~~l~~lrFt~eei~yL~-~~~~f~~~fldyL~~frf 94 (141)
T d1yira2 53 PAIREQLEYLAGLAISDEQLAFLE-RIPFLAPDFIRFLGLFRF 94 (141)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHH-TSTTSCHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH-cCCCCCHHHHHHHHhCCC
Confidence 457777888865 89999999885 599999999999987555
No 7
>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId: 727]}
Probab=10.71 E-value=1.7e+02 Score=20.86 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=30.2
Q ss_pred CCeEEeCCCCCCC-CceEEEEEeccccCCHHHHHHHHHHhc
Q 029056 69 SGVFEVEPKSCPG-FIFRRSVLLGTTNLSRAEFRSFMEHLS 108 (200)
Q Consensus 69 sGI~~~~P~~~pg-~~~r~si~LG~T~lt~~e~~~~l~~L~ 108 (200)
|-+++++|-...+ -.|--.+...+|.+++.++.+.+.++.
T Consensus 38 S~~y~T~p~g~~~~p~FlN~vv~~~T~l~p~~Ll~~l~~IE 78 (160)
T d1cbka_ 38 SSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIE 78 (160)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred cCceEcccccccchhhhhheeEEEEeCCCHHHHHHHHHHHH
Confidence 5677777754333 357788888999999999999887663
No 8
>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]}
Probab=10.23 E-value=1.9e+02 Score=20.65 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=30.0
Q ss_pred CCeEEeCCCCCCC-CceEEEEEeccccCCHHHHHHHHHHh
Q 029056 69 SGVFEVEPKSCPG-FIFRRSVLLGTTNLSRAEFRSFMEHL 107 (200)
Q Consensus 69 sGI~~~~P~~~pg-~~~r~si~LG~T~lt~~e~~~~l~~L 107 (200)
|-+++++|-.... -.|--.+.+.+|.+++.++...+..+
T Consensus 37 S~~y~T~p~g~~~qp~F~N~v~~~~T~l~p~~ll~~l~~I 76 (158)
T d1f9ya_ 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRI 76 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHH
T ss_pred ecceecccccccccchHhhhhhhhhhccCHHHHHHHHHHH
Confidence 5677777754333 35888888999999999999888765
No 9
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.87 E-value=1.1e+02 Score=19.68 Aligned_cols=26 Identities=15% Similarity=0.588 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHhc-c---CC-CCCccccc
Q 029056 94 NLSRAEFRSFMEHLS-G---KY-HGDTYHLI 119 (200)
Q Consensus 94 ~lt~~e~~~~l~~L~-~---~f-~g~tY~LL 119 (200)
+.|.+|+++||+++- + .+ .++.|-|+
T Consensus 44 ~~t~~eL~~FL~~~V~e~kL~~v~gG~YkLv 74 (74)
T d1ldda_ 44 RITLQQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp TCCHHHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred CcCHHHHHHHHHHHHhcCceEEecCCEEeeC
Confidence 568899999999883 2 24 68888764
No 10
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.07 E-value=47 Score=24.37 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcc-CCCCCcccccccccc-----hHHHHHHHHhcCCCCCh
Q 029056 97 RAEFRSFMEHLSG-KYHGDTYHLIAKNCN-----HFTEEVCMQLTGKCIPG 141 (200)
Q Consensus 97 ~~e~~~~l~~L~~-~f~g~tY~LL~rNCN-----HFsd~l~~~L~gk~IP~ 141 (200)
..++++.|+.|+. +|+.+..+-|+.+|. .|..++..+|-+-+.+.
T Consensus 66 ~~gL~~~i~~l~~lrFt~eei~yL~~~~~~~~~~~f~~~fl~~L~~f~f~~ 116 (160)
T d1ybea2 66 EMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPE 116 (160)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHSCSSSCSCCSCHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHhcCCccccCcCCHHHHHHHhcCCCCc
Confidence 4567888888875 888888888888885 59999999998766654
Done!