BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029057
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 83 GEYREIGEGDFLAEVTGSEK---AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDA 139
GE REI ++ EVT +EK + H Y C ++++HL LA K TKF+K
Sbjct: 10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIV 69
Query: 140 ENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGG 177
+ + LP + + + G + +G + GG
Sbjct: 70 NSC---IEHYHDNCLPTIFVYKNGQIEGKFIGIIECGG 104
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
Length = 118
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 83 GEYREIGEGDFLAEVTGSEK---AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDA 139
GE REI ++ EVT +E+ I H Y C ++++HL LA K TKF+K
Sbjct: 3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIV 62
Query: 140 ENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGG 177
+ + LP + + + G + +G + GG
Sbjct: 63 NSC---IQHYHDNCLPTIFVYKNGQIEAKFIGIIECGG 97
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 87 EIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGT-KFIKLDAENAPFF 145
E E F EV G+ + F+ C+++ L+ LA H G K +K++ + P
Sbjct: 37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGL 96
Query: 146 VTKLGIKTLPCVIILRKGIAIDRLVG 171
+ G++++P +++ R+G + VG
Sbjct: 97 AARYGVRSVPTLVLFRRGAPVATWVG 122
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 81 GHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDA 139
H ++ + DF ++V + + F+ CK++ L+ LA + G +KLD
Sbjct: 1 SHMAIVKVTDADFDSKVESGVQLV-DFWATACGPCKMIAPVLEELAADYEGKADILKLDV 59
Query: 140 ENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
+ P K + ++P +I+ + G +D++VGFQ
Sbjct: 60 DENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQ 93
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 81 GHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDA 139
H ++ + DF ++V + + F+ CK++ L+ LA + G +KLD
Sbjct: 2 SHMAIVKVTDADFDSKVESGVQLV-DFWATWCGTCKMIAPVLEELAADYEGKADILKLDV 60
Query: 140 ENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
+ P K + ++P +I+ + G +D++VGFQ
Sbjct: 61 DENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQ 94
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 81 GHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDA 139
H ++ + DF ++V + + F+ CK++ L+ LA + G +KLD
Sbjct: 2 SHMAIVKVTDADFDSKVESGVQLV-DFWATWCGPCKMIAPVLEELAADYEGKADILKLDV 60
Query: 140 ENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
+ P K + ++P +I+ + G +D++VGFQ
Sbjct: 61 DENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQ 94
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 88 IGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFV 146
+ + DF ++V + + F+ CK++ L+ LA + G +KLD + P
Sbjct: 8 VTDADFDSKVESGVQLV-DFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTA 66
Query: 147 TKLGIKTLPCVIILRKGIAIDRLVGFQ 173
K + ++P +I+ + G +D++VGFQ
Sbjct: 67 AKYEVMSIPTLIVFKDGQPVDKVVGFQ 93
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG 163
+ HF+ +C M++ + LA + F+KL+AE P K I ++P + +
Sbjct: 36 VVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNS 95
Query: 164 IAIDRLVG 171
IDRL G
Sbjct: 96 QKIDRLDG 103
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG 163
+ HF+ +C M++ + LA + F+KL+AE P K I ++P + +
Sbjct: 42 VVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNS 101
Query: 164 IAIDRLVG 171
IDRL G
Sbjct: 102 QKIDRLDG 109
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 92 DFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGI 151
+F + + E A+ F+ + C I+ ++ LA + F KL+++ P + G+
Sbjct: 8 NFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGV 67
Query: 152 KTLPCVIILRKGIAIDRLVG 171
+LP VI + G +D ++G
Sbjct: 68 MSLPTVIFFKDGEPVDEIIG 87
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 92 DFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGI 151
+F + ++K + FY CK+M HL L + +F+K D + +P + +
Sbjct: 22 EFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEV 81
Query: 152 KTLPCVIILRKGIAIDRLVG 171
+P ++ + G I +++G
Sbjct: 82 TAMPTFVLGKDGQLIGKIIG 101
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 81 GHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDA 139
H ++ + DF ++V + + F+ K++ L+ LA + G +KLD
Sbjct: 2 SHMAIVKVTDADFDSKVESGVQ-LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDV 60
Query: 140 ENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
+ P K + ++P +I+ + G +D++VGFQ
Sbjct: 61 DENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQ 94
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 82 HGEYREIGEGDFLAEVTGSEKAIC-HFYHKEFYRCKIMDKHLKALAPKHIGTK--FIKLD 138
G + I D +VTG +K + F+ CK++ + ++ G K F K+D
Sbjct: 14 RGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVD 73
Query: 139 AENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
+ ++GI+ +P + + G ID +VG
Sbjct: 74 VDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVG 106
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 92 DFLAEVTGSEKAICHFYHKEFY-RCKIMDKHL-KALAPKHIGTKFIKLDAENAPFFVTKL 149
DF V SE + +H ++ CKI+ L K +A +H K+D ++ +
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEY 81
Query: 150 GIKTLPCVIILRKGIAIDRLVGFQD 174
+ +P V+ ++ G +D+ VG +D
Sbjct: 82 EVSAVPTVLAMKNGDVVDKFVGIKD 106
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 87 EIGEGDFLAEVTGSEKAI-CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDA-ENAPF 144
E+ + +F EV S+K + F+ C+++ ++ LA ++ G + + P
Sbjct: 5 EVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN 64
Query: 145 FVTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
+ GI+++P +++ + G +DRLVG Q
Sbjct: 65 TAAQYGIRSIPTLLLFKNGQVVDRLVGAQ 93
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 76 VLQMKGHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI 135
V Q+K EY A +G + + F+ CK++ ++ A ++ F
Sbjct: 2 VTQLKSASEYDS-------ALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFY 54
Query: 136 KLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
KLD + K + ++P +I + G + R+VG
Sbjct: 55 KLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 76 VLQMKGHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI 135
V Q+K EY A +G + + F+ CK++ ++ A ++ F
Sbjct: 9 VTQLKSASEYDS-------ALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFY 61
Query: 136 KLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
KLD + K + ++P +I + G + R+VG
Sbjct: 62 KLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVG 97
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 115 CKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
CK +++ ++ +A + KF K+DA+N V+K + LP II R G + ++G
Sbjct: 52 CKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIG 108
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 97 VTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPC 156
+T ++ + F+ + C I+ ++ LA + F KL+ E + + GI +LP
Sbjct: 20 ITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPT 79
Query: 157 VIILRKGIAIDRLVG 171
++ + G +D+++G
Sbjct: 80 IMFFKNGELVDQILG 94
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 107 FYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIA 165
F+ C+ A + G +F+K++ E P T+ I+++P + + R G
Sbjct: 62 FWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRNGKX 121
Query: 166 IDRLVG 171
ID L G
Sbjct: 122 IDXLNG 127
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 86 REIGEGDFLAEVTGSEKAICHFYHKEFYR-CKIMDKHLKALAPKHIG-TKFIKLDAENAP 143
R + + DF EV I + + + CK M + +A + G +F +DAE+A
Sbjct: 2 RSLSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAE 61
Query: 144 FFVTKLGIKTLPCVIILRKGI 164
+ +L I+TLP + + G+
Sbjct: 62 KTMAELNIRTLPSLALFVDGM 82
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 86 REIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFF 145
R+I +A G AI F+ CK M+K L + +D+E P
Sbjct: 5 RDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPEL 64
Query: 146 VTKLGIKTLPCVIILRKG 163
+ +LG + +P ++ +R G
Sbjct: 65 MKELGFERVPTLVFIRDG 82
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 39/86 (45%)
Query: 89 GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTK 148
+ +F + ++ +E I F+ + CK + + + + FIK+D + K
Sbjct: 15 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEK 74
Query: 149 LGIKTLPCVIILRKGIAIDRLVGFQD 174
I ++P + + G ++D L+G D
Sbjct: 75 ENITSMPTFKVYKNGSSVDTLLGAND 100
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 93 FLAEVTGSEKAICHFYHKEFYR-CKIMDKHLKALA--PKHIGTKFIKLDAENAPFFVTKL 149
+L +K I ++H + CK + + +A++ P + F+ +DA+
Sbjct: 13 YLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELF 72
Query: 150 GIKTLPCVIILRKGIAIDRLVG 171
I +P II+ KG + L G
Sbjct: 73 EISAVPYFIIIHKGTILKELSG 94
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 76 VLQMKGHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI 135
V Q+K EY A +G + + F+ K++ ++ A ++ F
Sbjct: 2 VTQLKSASEYDS-------ALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFY 54
Query: 136 KLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
KLD + K + ++P +I + G + R+VG
Sbjct: 55 KLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 76 VLQMKGHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI 135
V Q+K EY A +G + + F+ K++ ++ A ++ F
Sbjct: 10 VTQLKSASEYDS-------ALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFY 62
Query: 136 KLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
KLD + K + ++P +I + G + R+VG
Sbjct: 63 KLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVG 98
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 115 CKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQD 174
C+++ A K G F+K+D + ++ +P + ++ G +D +VG
Sbjct: 43 CRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVG--- 99
Query: 175 LGGKDDFTTKTLEVL 189
G KDD TK + ++
Sbjct: 100 -GRKDDIHTKIVALM 113
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 87 EIGEGDFLAEVTGSEKAI-CHFYHKEFYRCKIMDKHLKALAPKHIGTKFI-KLDAENAPF 144
++ + F +V S K + F+ CK++ L+ +A + + KLD + P
Sbjct: 16 KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 75
Query: 145 FVTKLGIKTLPCVIILRKGIAIDRLVG 171
+ ++P +I+ + G + R+VG
Sbjct: 76 TARNFQVVSIPTLILFKDGQPVKRIVG 102
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 115 CKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
C+IM LA K F+K+D + + ++ +P + +++G DR+VG
Sbjct: 49 CRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVG 105
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 96 EVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLP 155
+ G + + F CK++ +L+ K+ F+++D ++A K GI+ +P
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIP 75
Query: 156 CVIILRKG 163
+++ + G
Sbjct: 76 TLLLFKNG 83
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 99 GSEKAIC-HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCV 157
GS+K I F CK++ LA K F+K+D + + ++ +P
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83
Query: 158 IILRKGIAIDRLVG 171
I L+ G +D+ VG
Sbjct: 84 IFLKDGKLVDKTVG 97
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 87 EIGEGDFLAEVTGSEKAI-CHFYHKEFYRCKIMDKHLKALAPKHIGTKFI-KLDAENAPF 144
++ + F +V S K + F+ CK++ L+ +A + + KLD + P
Sbjct: 11 KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 70
Query: 145 FVTKLGIKTLPCVIILRKGIAIDRLVG 171
+ ++P +I+ + G + R+VG
Sbjct: 71 TARNFQVVSIPTLILFKDGQPVKRIVG 97
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 77 LQMKGHGEYREIGEGDFLAEVTGSEK------------AICHFYHKEFYRCKIMDKHLKA 124
L +G+G+ + + +FLA+V EK AI FY CK++ L
Sbjct: 3 LATEGNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDE 62
Query: 125 LAPKHIGTKFI-KLDAENAPFFVTKLGIKTLPCVIIL 160
LA ++ G I K+D E GI+++P ++ +
Sbjct: 63 LAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFI 99
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 87 EIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI-KLDAENAPFF 145
E+ + +F + + F+ + C+ + L+ +A ++ G + KLD + P
Sbjct: 6 EVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKT 65
Query: 146 VTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
+ + ++P VI+ + G ++ LVG Q
Sbjct: 66 AXRYRVXSIPTVILFKDGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 87 EIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI-KLDAENAPFF 145
E+ + +F + + F+ + C+ + L+ +A ++ G + KLD + P
Sbjct: 5 EVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKT 64
Query: 146 VTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
+ + ++P VI+ + G ++ LVG Q
Sbjct: 65 AXRYRVXSIPTVILFKDGQPVEVLVGAQ 92
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 115 CKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
CK + + L+ + F+ +D + F IK P LR G +D+LVG
Sbjct: 61 CKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVG 117
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 84 EYREIGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAEN 141
E +++ + + V SE + F+ CK++ + LA ++ G KL+ +
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 142 APFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
AP T+ I+++P V+ + G + ++G
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 77 LQMKGHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIM----DKHLKALAPKHIGT 132
L++K + +G+F V + + FY CK +K L
Sbjct: 11 LEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPI 70
Query: 133 KFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAID 167
K+DA +A +K + P + IL+KG A+D
Sbjct: 71 AVAKIDATSASMLASKFDVSGYPTIKILKKGQAVD 105
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 83 GEYREIGEGDF--LAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE 140
G+ E+ + F + + G + + + + CK M + LA +++ F+KLD
Sbjct: 6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCN 65
Query: 141 NAPFFVTK-LGIKTLPCVIILRKGIAIDRLVG 171
+ K LGI+ +P IL++ + + G
Sbjct: 66 QENKTLAKELGIRVVPTFKILKENSVVGEVTG 97
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 83 GEYREIGEGDF--LAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDA- 139
G+ E+ + F + + G + + + + CK M + LA +++ F+KLD
Sbjct: 18 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCN 77
Query: 140 -ENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
EN +LGI+ +P IL++ + + G
Sbjct: 78 QENKT-LAKELGIRVVPTFKILKENSVVGEVTG 109
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 115 CKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
C+ + LA K F+K+D + + I+ +P + L++G +D++VG
Sbjct: 53 CRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVG 109
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 85 YREIGEGDFLAEVT--GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA 142
Y+ + DF ++ G++ + FY CK++ L+ L+ F+K+D +
Sbjct: 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDEC 62
Query: 143 PFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
I +P + ++ G +D L G
Sbjct: 63 EDIAQDNQIACMPTFLFMKNGQKLDSLSG 91
>pdb|1MW5|A Chain A, Structure Of Hi1480 From Haemophilus Influenzae
pdb|1MW5|B Chain B, Structure Of Hi1480 From Haemophilus Influenzae
Length = 187
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 67 LKKEAEKRQVLQ----MKGHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHL 122
L +E +Q L+ + HG + D L V G+ ++ F H+ K+ +HL
Sbjct: 49 LSEENWHKQFLKFAQALPAHGSASWLNLDDALQAVVGNSRSA--FLHQLI--AKLKSRHL 104
Query: 123 KALAPKHIGTKFIKLDAENAPFFV 146
+ L IG++ + L APF+V
Sbjct: 105 QVLELNKIGSEPLDLSNLPAPFYV 128
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 107 FYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIA 165
F+ CK++ + LA ++ G KL+ + AP T+ I+++P V+ + G
Sbjct: 24 FWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGER 83
Query: 166 IDRLVG 171
+ ++G
Sbjct: 84 KESIIG 89
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 93 FLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKF--IKLDAENAPFFVTKLG 150
F AE T + F+ CK++ L+ L + +G K +K+D + K G
Sbjct: 11 FSAE-TSEGVVLADFWAPWCGPCKMIAPVLEELD-QEMGDKLKIVKIDVDENQETAGKYG 68
Query: 151 IKTLPCVIILRKGIAIDRLVGFQ 173
+ ++P +++L+ G ++ VGF+
Sbjct: 69 VMSIPTLLVLKDGEVVETSVGFK 91
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI-KLDAENAPFFVTKLGIKTLPCV 157
G + AI FY CK++ L+ L+ ++ G +I K++ + P GI+++P +
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 158 IIL 160
+
Sbjct: 110 WFV 112
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/79 (18%), Positives = 35/79 (44%)
Query: 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG 163
+ F+ + C+ + ++ALA + +F K+D + K + +P + ++ G
Sbjct: 23 VVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82
Query: 164 IAIDRLVGFQDLGGKDDFT 182
+DR G + ++ T
Sbjct: 83 KEVDRFSGANETKLRETIT 101
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/73 (19%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVI 158
S + F+ C+I+ + +A ++ K +KL+ + +P ++ GI+++P ++
Sbjct: 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIM 78
Query: 159 ILRKGIAIDRLVG 171
+ + G + ++G
Sbjct: 79 VFKGGKKCETIIG 91
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 91 GDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLG 150
+F A G + I +Y + L+ + F+ +D + F
Sbjct: 51 ANFSARWCGPSRQIAPYYIE--------------LSENYPSLMFLVIDVDELSDFSASWE 96
Query: 151 IKTLPCVIILRKGIAIDRLVG 171
IK P LR G +D+LVG
Sbjct: 97 IKATPTFFFLRDGQQVDKLVG 117
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 92 DFLAEVTGSEKA----ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVT 147
+F A++T +++A I F C+ + A K G F+K+D +
Sbjct: 24 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAE 83
Query: 148 KLGIKTLPCVIILRKGIAIDRLVG 171
K ++ +P + ++ G D++VG
Sbjct: 84 KYNVEAMPTFLFIKDGAEADKVVG 107
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 133 KFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
K +K+D + K G+ ++P +++L+ G ++ VGF+
Sbjct: 51 KIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFK 91
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 133 KFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQ 173
K +K+D + K G+ ++P +++L+ G ++ VGF+
Sbjct: 51 KIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFK 91
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI-KLDAENAPFFVTKLGIKTLPCV 157
G + AI FY CK++ L+ L+ ++ G +I K++ + P GI+ +P +
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 158 IIL 160
+
Sbjct: 110 WFV 112
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 116 KIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
+IM LA K F+K+D + + ++ +P + +++G DR+VG
Sbjct: 53 RIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVG 108
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/81 (17%), Positives = 36/81 (44%)
Query: 91 GDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLG 150
+F + + + + FY CK++ ++ + ++ F KLD + K
Sbjct: 9 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNE 68
Query: 151 IKTLPCVIILRKGIAIDRLVG 171
+ +P +++ + G + ++VG
Sbjct: 69 VSAMPTLLLFKNGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/81 (17%), Positives = 36/81 (44%)
Query: 91 GDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLG 150
+F + + + + FY CK++ ++ + ++ F KLD + K
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNE 74
Query: 151 IKTLPCVIILRKGIAIDRLVG 171
+ +P +++ + G + ++VG
Sbjct: 75 VSAMPTLLLFKNGKEVAKVVG 95
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 77 LQMKGHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALA----PKHIGT 132
L++K + + +F V + + FY CK + +A K
Sbjct: 9 LEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPI 68
Query: 133 KFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAID 167
K+DA +A ++ + P + IL+KG A+D
Sbjct: 69 PVAKIDATSASVLASRFDVSGYPTIKILKKGQAVD 103
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 83 GEYREIGEGDFLAEVTGSEKAI-CHFYHKEFYRCKIMDKHLKALAPKHIGTKF--IKLDA 139
G + + + F +V ++K + F+ C+ + L+A+A ++ G K +KL+
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY-GDKIEIVKLNI 63
Query: 140 ENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
+ P K G+ ++P + + + G +VG
Sbjct: 64 DENPGTAAKYGVMSIPTLNVYQGGEVAKTIVG 95
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 75 QVLQMKGHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKF 134
Q++ M E ++ G+ + L E ++ + F+ CK + K L+ K+ F
Sbjct: 8 QLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-F 66
Query: 135 IKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
+K+D + K I +P I ++ G + +VG
Sbjct: 67 VKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVG 103
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 84 EYREIGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAEN 141
E +++ + + V SE + F+ K++ + LA ++ G KL+ +
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 142 APFFVTKLGIKTLPCVIILRKGIAIDRLVG 171
AP T+ I+++P V+ + G + ++G
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 84 EYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP 143
E ++ G+ + L E ++ + F+ CK + K L+ K+ F+K+D +
Sbjct: 8 ELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLE 66
Query: 144 FFVTKLGIKTLPCVIILRKGIAIDRLVG 171
K I +P I ++ G + +VG
Sbjct: 67 ETARKYNISAMPTFIAIKNGEKVGDVVG 94
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTK--FIKLDAENAPFFVTKLGIKTLPCVIILR 161
+ +F+ K C + + L K+ G + +K+D + K +K+LP +I+L+
Sbjct: 46 VLYFFAKWCQACTMQSTEMDKLQ-KYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLK 104
Query: 162 KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193
+ R KD F + + L+KK
Sbjct: 105 NKTMLAR---------KDHFVSSNDLIALIKK 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,961,972
Number of Sequences: 62578
Number of extensions: 173978
Number of successful extensions: 419
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 67
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)