Query 029057
Match_columns 200
No_of_seqs 253 out of 2037
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1672 ATP binding protein [P 100.0 1.8E-37 3.9E-42 233.7 15.2 179 21-199 4-183 (211)
2 cd02988 Phd_like_VIAF Phosduci 100.0 1.8E-34 4E-39 224.1 18.2 133 52-194 57-192 (192)
3 cd02987 Phd_like_Phd Phosducin 100.0 9.5E-35 2.1E-39 223.0 16.0 135 53-194 37-175 (175)
4 PF02114 Phosducin: Phosducin; 100.0 2.8E-29 6E-34 203.3 16.0 143 49-198 96-242 (265)
5 cd02989 Phd_like_TxnDC9 Phosdu 100.0 1.6E-27 3.5E-32 170.7 15.1 111 81-191 2-113 (113)
6 cd02957 Phd_like Phosducin (Ph 99.9 2.8E-26 6.1E-31 164.2 13.2 108 81-190 2-112 (113)
7 KOG3170 Conserved phosducin-li 99.9 1.4E-25 3.1E-30 170.0 14.3 145 43-197 57-205 (240)
8 KOG0910 Thioredoxin-like prote 99.9 9.8E-25 2.1E-29 159.9 11.3 102 84-193 44-147 (150)
9 cd02954 DIM1 Dim1 family; Dim1 99.9 2.9E-23 6.2E-28 147.6 11.3 89 90-178 2-93 (114)
10 PHA02278 thioredoxin-like prot 99.9 1.6E-22 3.5E-27 142.3 12.9 86 89-174 3-93 (103)
11 cd02985 TRX_CDSP32 TRX family, 99.9 3E-22 6.6E-27 141.0 13.1 97 89-194 2-103 (103)
12 PF00085 Thioredoxin: Thioredo 99.9 7.7E-22 1.7E-26 137.7 14.1 101 85-193 1-103 (103)
13 KOG0907 Thioredoxin [Posttrans 99.9 4.2E-22 9.1E-27 140.4 12.7 84 101-193 22-105 (106)
14 cd03065 PDI_b_Calsequestrin_N 99.9 7.8E-22 1.7E-26 142.1 12.1 103 81-192 7-117 (120)
15 cd03006 PDI_a_EFP1_N PDIa fami 99.9 7.3E-22 1.6E-26 141.1 11.9 93 82-174 8-105 (113)
16 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 6.9E-22 1.5E-26 138.5 10.9 91 84-174 2-93 (101)
17 cd02948 TRX_NDPK TRX domain, T 99.9 8.6E-21 1.9E-25 133.3 13.4 94 89-192 6-101 (102)
18 COG3118 Thioredoxin domain-con 99.9 1.3E-21 2.7E-26 157.7 10.2 103 84-194 24-130 (304)
19 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3.6E-21 7.7E-26 135.4 11.0 91 84-174 2-95 (104)
20 cd02965 HyaE HyaE family; HyaE 99.9 7.1E-21 1.5E-25 134.5 11.6 91 84-174 11-104 (111)
21 PRK10996 thioredoxin 2; Provis 99.8 3.2E-20 7E-25 137.5 13.9 103 83-193 35-138 (139)
22 PRK09381 trxA thioredoxin; Pro 99.8 3.3E-20 7.2E-25 131.6 13.4 102 84-193 4-107 (109)
23 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.4E-20 2.9E-25 133.5 11.3 91 84-174 2-100 (108)
24 cd02962 TMX2 TMX2 family; comp 99.8 3.5E-20 7.6E-25 138.8 13.7 110 81-190 26-148 (152)
25 PLN00410 U5 snRNP protein, DIM 99.8 2.9E-20 6.3E-25 137.0 13.0 106 86-191 6-117 (142)
26 cd02956 ybbN ybbN protein fami 99.8 2.5E-20 5.4E-25 129.2 11.9 91 92-190 2-95 (96)
27 cd02963 TRX_DnaJ TRX domain, D 99.8 2.6E-20 5.7E-25 132.9 12.0 98 87-192 8-110 (111)
28 PTZ00051 thioredoxin; Provisio 99.8 2.7E-20 5.8E-25 129.4 11.7 89 85-173 2-91 (98)
29 cd03005 PDI_a_ERp46 PDIa famil 99.8 2.5E-20 5.4E-25 130.3 11.4 97 85-190 2-102 (102)
30 cd02994 PDI_a_TMX PDIa family, 99.8 4.3E-20 9.4E-25 129.2 12.3 97 84-191 2-100 (101)
31 cd02984 TRX_PICOT TRX domain, 99.8 4E-20 8.7E-25 128.2 11.6 93 89-190 1-96 (97)
32 cd02999 PDI_a_ERp44_like PDIa 99.8 6.9E-20 1.5E-24 128.3 10.5 75 99-174 17-92 (100)
33 KOG0908 Thioredoxin-like prote 99.8 8.1E-20 1.7E-24 143.3 10.5 90 85-174 3-95 (288)
34 cd02986 DLP Dim1 family, Dim1- 99.8 1.6E-19 3.4E-24 127.7 10.9 83 90-172 2-87 (114)
35 cd02997 PDI_a_PDIR PDIa family 99.8 2.5E-19 5.4E-24 125.5 11.4 98 85-190 2-104 (104)
36 TIGR01068 thioredoxin thioredo 99.8 6.2E-19 1.3E-23 122.4 12.3 97 88-192 1-99 (101)
37 cd03002 PDI_a_MPD1_like PDI fa 99.8 3.2E-19 7E-24 126.2 11.0 98 85-190 2-108 (109)
38 KOG3171 Conserved phosducin-li 99.8 2.3E-19 5.1E-24 137.6 9.2 143 49-198 109-255 (273)
39 PTZ00443 Thioredoxin domain-co 99.8 1.2E-18 2.6E-23 138.2 13.0 102 83-192 30-137 (224)
40 cd03001 PDI_a_P5 PDIa family, 99.8 1.5E-18 3.2E-23 121.4 12.0 98 85-190 2-102 (103)
41 TIGR01295 PedC_BrcD bacterioci 99.8 3.7E-18 8E-23 123.7 13.3 100 84-191 7-121 (122)
42 TIGR01126 pdi_dom protein disu 99.8 1.6E-18 3.4E-23 120.8 10.9 98 88-193 1-101 (102)
43 cd02950 TxlA TRX-like protein 99.8 2.2E-18 4.7E-23 128.2 12.1 96 90-193 10-109 (142)
44 cd02975 PfPDO_like_N Pyrococcu 99.8 3.5E-18 7.7E-23 122.2 11.5 92 92-191 14-107 (113)
45 cd02949 TRX_NTR TRX domain, no 99.8 8.1E-18 1.7E-22 117.0 11.9 89 94-190 6-96 (97)
46 cd02953 DsbDgamma DsbD gamma f 99.8 2.3E-18 5E-23 121.1 9.0 92 91-190 2-103 (104)
47 cd03000 PDI_a_TMX3 PDIa family 99.8 5.1E-18 1.1E-22 119.5 10.5 93 91-193 7-103 (104)
48 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 7.1E-18 1.5E-22 117.9 10.2 89 85-174 2-96 (104)
49 cd02961 PDI_a_family Protein D 99.8 6.3E-18 1.4E-22 116.7 9.7 95 87-189 2-100 (101)
50 PTZ00062 glutaredoxin; Provisi 99.8 1.1E-17 2.4E-22 130.8 11.9 78 89-174 5-83 (204)
51 cd02998 PDI_a_ERp38 PDIa famil 99.8 8.2E-18 1.8E-22 117.7 9.8 98 85-190 2-105 (105)
52 cd02947 TRX_family TRX family; 99.7 7.3E-17 1.6E-21 109.3 12.2 91 92-190 2-92 (93)
53 cd02992 PDI_a_QSOX PDIa family 99.7 5.5E-17 1.2E-21 116.2 11.2 90 84-174 2-98 (114)
54 cd02993 PDI_a_APS_reductase PD 99.7 7.1E-17 1.5E-21 114.7 11.0 88 84-171 2-97 (109)
55 KOG0190 Protein disulfide isom 99.7 4.2E-17 9.1E-22 140.8 8.9 104 82-193 24-131 (493)
56 cd02951 SoxW SoxW family; SoxW 99.7 4.2E-16 9.1E-21 113.2 11.3 94 91-192 4-117 (125)
57 cd03007 PDI_a_ERp29_N PDIa fam 99.7 6.6E-16 1.4E-20 110.2 10.3 99 85-193 3-115 (116)
58 TIGR01130 ER_PDI_fam protein d 99.7 7.2E-16 1.6E-20 134.1 12.6 101 84-192 2-107 (462)
59 cd02952 TRP14_like Human TRX-r 99.7 5.3E-16 1.1E-20 111.5 9.0 82 89-173 8-107 (119)
60 PTZ00102 disulphide isomerase; 99.7 1.3E-15 2.9E-20 133.4 12.9 102 83-193 32-137 (477)
61 PTZ00102 disulphide isomerase; 99.6 1.8E-15 4E-20 132.6 11.5 106 82-195 356-466 (477)
62 TIGR00424 APS_reduc 5'-adenyly 99.6 3.6E-15 7.8E-20 129.2 12.7 103 83-192 351-461 (463)
63 PLN02309 5'-adenylylsulfate re 99.6 1E-14 2.2E-19 126.4 12.9 104 83-193 345-456 (457)
64 PHA02125 thioredoxin-like prot 99.6 1.6E-14 3.4E-19 95.8 10.1 63 104-174 2-64 (75)
65 cd02959 ERp19 Endoplasmic reti 99.6 6.4E-15 1.4E-19 106.0 8.8 92 91-182 10-106 (117)
66 KOG0190 Protein disulfide isom 99.6 3.2E-15 6.9E-20 129.2 8.4 103 83-195 366-474 (493)
67 TIGR00411 redox_disulf_1 small 99.6 2.3E-14 4.9E-19 96.1 10.4 77 104-192 3-80 (82)
68 cd02982 PDI_b'_family Protein 99.6 1.4E-14 3E-19 101.3 9.5 85 100-192 12-101 (103)
69 TIGR02187 GlrX_arch Glutaredox 99.6 2.6E-14 5.7E-19 113.2 11.6 82 92-174 12-99 (215)
70 TIGR02187 GlrX_arch Glutaredox 99.5 1.4E-13 3E-18 109.1 12.1 79 103-192 136-214 (215)
71 TIGR01130 ER_PDI_fam protein d 99.5 8E-14 1.7E-18 121.3 11.0 103 82-194 345-454 (462)
72 TIGR00412 redox_disulf_2 small 99.5 1.6E-13 3.5E-18 91.2 9.6 73 104-190 2-75 (76)
73 cd02955 SSP411 TRX domain, SSP 99.5 4.1E-13 9E-18 97.3 11.0 86 89-174 4-102 (124)
74 TIGR02738 TrbB type-F conjugat 99.5 5.4E-13 1.2E-17 100.2 11.2 88 96-192 46-151 (153)
75 cd02973 TRX_GRX_like Thioredox 99.5 2.9E-13 6.3E-18 87.5 8.4 60 104-165 3-62 (67)
76 KOG4277 Uncharacterized conser 99.5 1.1E-13 2.4E-18 111.8 7.1 87 98-193 41-131 (468)
77 PRK00293 dipZ thiol:disulfide 99.4 7E-13 1.5E-17 118.8 11.7 101 85-193 454-569 (571)
78 PRK14018 trifunctional thiored 99.4 1.1E-12 2.4E-17 115.2 11.8 85 99-191 55-170 (521)
79 cd03010 TlpA_like_DsbE TlpA-li 99.4 1.1E-12 2.4E-17 95.2 9.9 81 93-174 18-122 (127)
80 PF13098 Thioredoxin_2: Thiore 99.4 6.9E-13 1.5E-17 94.1 8.2 84 99-190 4-112 (112)
81 PRK15412 thiol:disulfide inter 99.4 3.6E-12 7.9E-17 98.7 12.3 74 99-174 67-164 (185)
82 KOG0912 Thiol-disulfide isomer 99.4 5E-13 1.1E-17 108.0 6.8 86 89-174 2-94 (375)
83 TIGR00385 dsbE periplasmic pro 99.4 5.2E-12 1.1E-16 96.8 11.4 84 99-192 62-169 (173)
84 PRK11509 hydrogenase-1 operon 99.4 7.7E-12 1.7E-16 91.0 11.6 100 85-192 19-122 (132)
85 cd03009 TryX_like_TryX_NRX Try 99.4 1.9E-12 4.2E-17 94.5 8.3 70 99-168 17-115 (131)
86 cd03008 TryX_like_RdCVF Trypar 99.4 3.8E-12 8.2E-17 94.7 9.4 70 99-168 24-128 (146)
87 TIGR02740 TraF-like TraF-like 99.4 8.1E-12 1.7E-16 102.2 11.9 83 100-191 166-261 (271)
88 cd02966 TlpA_like_family TlpA- 99.4 3.3E-12 7.1E-17 89.6 8.4 73 99-171 18-116 (116)
89 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 3.9E-12 8.4E-17 87.1 8.0 67 100-168 12-78 (89)
90 PRK03147 thiol-disulfide oxido 99.4 9.9E-12 2.1E-16 94.7 11.0 99 86-192 47-170 (173)
91 PF13905 Thioredoxin_8: Thiore 99.3 6.1E-12 1.3E-16 86.6 8.5 65 101-165 2-95 (95)
92 cd02964 TryX_like_family Trypa 99.3 7.1E-12 1.5E-16 91.8 8.3 72 99-170 16-117 (132)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 2E-11 4.3E-16 87.9 9.5 87 87-174 7-114 (123)
94 KOG0191 Thioredoxin/protein di 99.3 1E-11 2.2E-16 106.4 8.6 88 85-172 31-120 (383)
95 PRK13728 conjugal transfer pro 99.3 6.7E-11 1.4E-15 90.7 11.1 70 104-174 73-159 (181)
96 PLN02919 haloacid dehalogenase 99.3 3.3E-11 7.3E-16 114.6 11.0 85 99-191 419-533 (1057)
97 cd03012 TlpA_like_DipZ_like Tl 99.2 6.1E-11 1.3E-15 86.1 9.2 74 99-172 22-125 (126)
98 PF08534 Redoxin: Redoxin; In 99.2 1.4E-10 3E-15 86.1 10.0 87 98-190 26-146 (146)
99 cd02967 mauD Methylamine utili 99.2 1.2E-10 2.6E-15 82.7 8.8 69 100-168 21-111 (114)
100 KOG1731 FAD-dependent sulfhydr 99.2 1.2E-11 2.6E-16 107.5 3.0 81 83-163 39-126 (606)
101 COG4232 Thiol:disulfide interc 99.2 9.7E-11 2.1E-15 102.7 8.6 105 81-193 451-567 (569)
102 cd02958 UAS UAS family; UAS is 99.2 5.6E-10 1.2E-14 79.7 10.6 90 95-192 12-109 (114)
103 KOG0914 Thioredoxin-like prote 99.1 7.6E-11 1.6E-15 91.3 6.2 105 82-186 123-240 (265)
104 KOG0191 Thioredoxin/protein di 99.1 3.9E-10 8.4E-15 96.7 8.4 101 85-193 146-251 (383)
105 cd02960 AGR Anterior Gradient 99.1 5.1E-10 1.1E-14 81.4 7.7 82 91-174 14-101 (130)
106 TIGR02661 MauD methylamine deh 99.0 3.3E-09 7.2E-14 82.4 10.4 85 99-193 73-178 (189)
107 PLN02399 phospholipid hydroper 99.0 2.4E-09 5.2E-14 85.8 9.4 86 99-192 98-232 (236)
108 TIGR01626 ytfJ_HI0045 conserve 99.0 3.1E-09 6.7E-14 81.9 9.2 83 92-174 51-168 (184)
109 PTZ00056 glutathione peroxidas 99.0 2.5E-09 5.4E-14 83.8 8.6 42 99-140 38-81 (199)
110 TIGR02196 GlrX_YruB Glutaredox 99.0 4.5E-09 9.7E-14 68.2 8.5 68 104-190 2-73 (74)
111 COG0526 TrxA Thiol-disulfide i 98.9 2.1E-09 4.5E-14 74.7 6.1 72 100-171 32-107 (127)
112 smart00594 UAS UAS domain. 98.9 2E-08 4.3E-13 72.7 10.7 85 98-190 25-121 (122)
113 cd00340 GSH_Peroxidase Glutath 98.9 4.3E-09 9.2E-14 78.9 7.1 41 99-140 21-63 (152)
114 cd02969 PRX_like1 Peroxiredoxi 98.9 3.5E-08 7.5E-13 75.3 12.1 70 99-168 24-125 (171)
115 PLN02412 probable glutathione 98.9 1.2E-08 2.5E-13 77.8 8.8 76 99-174 28-152 (167)
116 PF13899 Thioredoxin_7: Thiore 98.9 7.1E-09 1.5E-13 69.6 6.4 69 92-161 9-81 (82)
117 PF14595 Thioredoxin_9: Thiore 98.9 2.3E-08 5E-13 73.0 9.3 71 103-173 44-118 (129)
118 TIGR02540 gpx7 putative glutat 98.9 1.8E-08 4E-13 75.5 8.9 86 99-192 21-151 (153)
119 cd03017 PRX_BCP Peroxiredoxin 98.8 2E-08 4.4E-13 73.6 8.5 76 99-174 22-131 (140)
120 cd01659 TRX_superfamily Thiore 98.8 2.1E-08 4.4E-13 62.0 7.3 60 104-163 1-63 (69)
121 TIGR02200 GlrX_actino Glutared 98.8 2.1E-08 4.6E-13 65.9 6.8 57 104-166 2-63 (77)
122 cd03014 PRX_Atyp2cys Peroxired 98.8 8.3E-08 1.8E-12 70.8 10.1 76 99-174 25-131 (143)
123 PF13192 Thioredoxin_3: Thiore 98.7 1.7E-07 3.7E-12 62.0 9.6 73 105-191 3-76 (76)
124 PRK00522 tpx lipid hydroperoxi 98.7 3.3E-07 7.1E-12 69.8 11.3 75 99-173 43-151 (167)
125 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 1.4E-07 2.9E-12 67.7 7.9 69 99-167 24-123 (124)
126 KOG0911 Glutaredoxin-related p 98.7 1.3E-08 2.7E-13 79.6 2.4 89 85-175 3-92 (227)
127 KOG3414 Component of the U4/U6 98.6 4.7E-07 1E-11 64.5 9.4 82 86-167 6-91 (142)
128 PRK11200 grxA glutaredoxin 1; 98.6 4E-07 8.7E-12 61.4 8.6 61 104-166 3-69 (85)
129 TIGR02180 GRX_euk Glutaredoxin 98.6 2.5E-07 5.5E-12 61.8 7.3 60 104-166 1-65 (84)
130 PF13728 TraF: F plasmid trans 98.6 5.6E-07 1.2E-11 71.3 10.4 72 102-174 122-206 (215)
131 PRK09437 bcp thioredoxin-depen 98.6 4.6E-07 9.9E-12 67.8 9.3 76 99-174 29-141 (154)
132 cd02970 PRX_like2 Peroxiredoxi 98.6 6.3E-07 1.4E-11 66.2 9.7 41 101-141 24-67 (149)
133 KOG2501 Thioredoxin, nucleored 98.6 1.5E-07 3.3E-12 70.0 6.0 71 98-168 31-131 (157)
134 cd03015 PRX_Typ2cys Peroxiredo 98.5 1E-06 2.3E-11 67.3 10.6 89 99-191 28-154 (173)
135 cd03018 PRX_AhpE_like Peroxire 98.5 7.5E-07 1.6E-11 66.0 9.5 73 101-173 29-134 (149)
136 TIGR03137 AhpC peroxiredoxin. 98.5 9.7E-07 2.1E-11 68.5 10.4 90 99-192 30-154 (187)
137 PHA03050 glutaredoxin; Provisi 98.5 4.3E-07 9.3E-12 64.3 7.4 97 92-198 4-107 (108)
138 PTZ00256 glutathione peroxidas 98.5 4.9E-07 1.1E-11 69.9 8.2 42 99-140 39-83 (183)
139 KOG0913 Thiol-disulfide isomer 98.5 4.6E-08 1E-12 76.8 2.3 89 84-175 25-115 (248)
140 PF06110 DUF953: Eukaryotic pr 98.5 8.9E-07 1.9E-11 63.5 7.7 80 91-173 6-106 (119)
141 cd02976 NrdH NrdH-redoxin (Nrd 98.4 2.1E-06 4.5E-11 55.3 8.6 60 104-173 2-65 (73)
142 cd02971 PRX_family Peroxiredox 98.4 1.5E-06 3.2E-11 63.6 8.1 76 99-174 21-131 (140)
143 PRK10382 alkyl hydroperoxide r 98.4 8.5E-06 1.8E-10 63.2 12.1 100 83-191 19-153 (187)
144 COG2143 Thioredoxin-related pr 98.4 4.3E-06 9.2E-11 62.0 9.6 76 100-175 42-138 (182)
145 TIGR02183 GRXA Glutaredoxin, G 98.4 5.1E-06 1.1E-10 56.2 9.4 74 104-193 2-81 (86)
146 cd02968 SCO SCO (an acronym fo 98.4 1.6E-06 3.4E-11 63.7 7.0 42 99-140 21-68 (142)
147 KOG3425 Uncharacterized conser 98.3 3E-06 6.4E-11 60.0 7.5 73 98-172 23-112 (128)
148 TIGR02739 TraF type-F conjugat 98.3 6.1E-06 1.3E-10 66.9 10.4 72 102-174 152-236 (256)
149 PF02966 DIM1: Mitosis protein 98.3 1.1E-05 2.4E-10 58.2 10.6 86 86-172 3-93 (133)
150 PF13848 Thioredoxin_6: Thiore 98.3 2.5E-05 5.3E-10 59.6 13.3 105 81-192 75-184 (184)
151 cd03419 GRX_GRXh_1_2_like Glut 98.3 3.2E-06 7E-11 56.2 7.0 57 104-165 2-63 (82)
152 PRK15000 peroxidase; Provision 98.3 1.1E-05 2.4E-10 63.3 10.8 79 99-177 33-149 (200)
153 PF03190 Thioredox_DsbH: Prote 98.3 1.3E-05 2.8E-10 60.5 10.2 93 81-173 16-123 (163)
154 PF00462 Glutaredoxin: Glutare 98.3 7.3E-06 1.6E-10 51.4 7.6 56 104-166 1-60 (60)
155 PRK10877 protein disulfide iso 98.3 4.3E-06 9.3E-11 67.1 8.0 81 101-193 108-230 (232)
156 PF07449 HyaE: Hydrogenase-1 e 98.3 4.9E-06 1.1E-10 58.5 7.2 90 85-175 11-104 (107)
157 PF01216 Calsequestrin: Calseq 98.2 2.9E-05 6.2E-10 64.7 11.3 103 81-192 32-142 (383)
158 TIGR02189 GlrX-like_plant Glut 98.2 3.6E-06 7.9E-11 58.6 5.2 81 104-196 10-97 (99)
159 TIGR03143 AhpF_homolog putativ 98.2 2.3E-05 5E-10 70.5 11.5 75 104-190 480-554 (555)
160 PRK13190 putative peroxiredoxi 98.1 2.6E-05 5.6E-10 61.2 10.1 75 100-174 27-138 (202)
161 PRK13703 conjugal pilus assemb 98.1 2.4E-05 5.2E-10 63.1 9.8 82 102-191 145-238 (248)
162 cd03016 PRX_1cys Peroxiredoxin 98.1 3E-05 6.4E-10 60.9 9.9 86 103-192 29-152 (203)
163 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 1E-05 2.2E-10 63.1 7.0 76 100-190 77-197 (197)
164 PRK15317 alkyl hydroperoxide r 98.1 4.2E-05 9.1E-10 68.2 11.4 68 103-174 119-186 (517)
165 PRK10606 btuE putative glutath 98.1 1.3E-05 2.9E-10 61.9 6.9 41 99-140 24-66 (183)
166 cd02991 UAS_ETEA UAS family, E 98.1 0.00012 2.6E-09 52.4 11.4 84 99-192 16-111 (116)
167 cd02066 GRX_family Glutaredoxi 98.1 2.5E-05 5.4E-10 49.9 7.2 57 104-167 2-62 (72)
168 PRK13599 putative peroxiredoxi 98.0 5.9E-05 1.3E-09 59.8 10.2 75 100-174 28-140 (215)
169 PRK13189 peroxiredoxin; Provis 98.0 8E-05 1.7E-09 59.3 10.1 74 103-176 39-149 (222)
170 PRK10329 glutaredoxin-like pro 98.0 0.00016 3.5E-09 48.3 9.9 71 104-193 3-76 (81)
171 TIGR02190 GlrX-dom Glutaredoxi 98.0 5.6E-05 1.2E-09 50.2 7.5 56 103-165 9-67 (79)
172 TIGR02194 GlrX_NrdH Glutaredox 97.9 9.1E-05 2E-09 48.2 7.8 61 105-174 2-65 (72)
173 PTZ00137 2-Cys peroxiredoxin; 97.9 0.00025 5.3E-09 57.8 11.8 77 99-175 97-210 (261)
174 PRK13191 putative peroxiredoxi 97.9 0.00015 3.2E-09 57.5 10.1 77 100-176 33-147 (215)
175 TIGR03140 AhpF alkyl hydropero 97.9 0.00018 3.9E-09 64.2 11.4 68 103-174 120-187 (515)
176 PF05768 DUF836: Glutaredoxin- 97.8 0.00035 7.5E-09 46.6 9.9 78 104-191 2-81 (81)
177 PTZ00253 tryparedoxin peroxida 97.8 0.00024 5.1E-09 55.6 10.4 78 99-176 35-150 (199)
178 cd03418 GRX_GRXb_1_3_like Glut 97.8 0.00014 3E-09 47.3 7.6 56 104-166 2-62 (75)
179 cd03027 GRX_DEP Glutaredoxin ( 97.8 0.00018 3.8E-09 46.9 8.0 57 104-167 3-63 (73)
180 TIGR02181 GRX_bact Glutaredoxi 97.8 7.5E-05 1.6E-09 49.3 6.3 56 104-166 1-60 (79)
181 PRK10824 glutaredoxin-4; Provi 97.7 8.6E-05 1.9E-09 53.0 5.7 93 92-196 6-106 (115)
182 PRK11657 dsbG disulfide isomer 97.7 0.00019 4E-09 58.3 8.3 80 102-191 119-249 (251)
183 PF11009 DUF2847: Protein of u 97.7 0.00046 1E-08 48.3 9.1 85 87-171 3-96 (105)
184 cd02983 P5_C P5 family, C-term 97.7 0.0014 3E-08 47.9 12.1 102 84-193 3-114 (130)
185 cd03029 GRX_hybridPRX5 Glutare 97.7 0.00042 9.1E-09 44.9 7.7 56 104-166 3-61 (72)
186 TIGR00365 monothiol glutaredox 97.6 0.00084 1.8E-08 46.4 9.2 66 94-166 5-78 (97)
187 PF13462 Thioredoxin_4: Thiore 97.5 0.0017 3.7E-08 48.4 10.5 39 101-139 13-54 (162)
188 cd03072 PDI_b'_ERp44 PDIb' fam 97.5 0.002 4.3E-08 45.7 10.0 101 85-193 1-107 (111)
189 KOG1752 Glutaredoxin and relat 97.5 0.0005 1.1E-08 48.2 6.6 66 96-167 9-79 (104)
190 cd03019 DsbA_DsbA DsbA family, 97.5 0.0011 2.3E-08 50.3 9.1 37 99-135 14-51 (178)
191 KOG2603 Oligosaccharyltransfer 97.5 0.0015 3.2E-08 53.8 10.2 109 82-193 39-165 (331)
192 cd02981 PDI_b_family Protein D 97.4 0.0026 5.5E-08 43.4 9.6 91 87-192 3-96 (97)
193 PRK10638 glutaredoxin 3; Provi 97.3 0.0016 3.4E-08 43.5 7.4 57 104-167 4-64 (83)
194 COG0695 GrxC Glutaredoxin and 97.3 0.0019 4E-08 43.1 7.5 55 104-165 3-63 (80)
195 cd03028 GRX_PICOT_like Glutare 97.3 0.0024 5.2E-08 43.4 8.2 61 99-166 6-74 (90)
196 cd02972 DsbA_family DsbA famil 97.3 0.0011 2.3E-08 44.5 6.5 57 104-160 1-90 (98)
197 cd03073 PDI_b'_ERp72_ERp57 PDI 97.3 0.0034 7.5E-08 44.5 8.9 96 88-192 4-109 (111)
198 PF00837 T4_deiodinase: Iodoth 97.2 0.0041 8.8E-08 49.7 9.4 105 82-193 81-236 (237)
199 PRK12759 bifunctional gluaredo 97.1 0.0016 3.4E-08 56.7 6.7 80 104-197 4-95 (410)
200 cd03023 DsbA_Com1_like DsbA fa 97.0 0.0019 4.1E-08 47.5 5.5 38 101-138 6-43 (154)
201 PTZ00062 glutaredoxin; Provisi 96.6 0.015 3.3E-07 45.7 8.3 68 92-166 104-179 (204)
202 TIGR03143 AhpF_homolog putativ 96.6 0.02 4.2E-07 51.7 9.9 72 103-174 369-442 (555)
203 PF07912 ERp29_N: ERp29, N-ter 96.5 0.11 2.5E-06 37.2 11.4 103 85-197 6-123 (126)
204 PF01323 DSBA: DSBA-like thior 95.8 0.14 2.9E-06 39.2 9.7 32 104-135 2-33 (193)
205 PF13848 Thioredoxin_6: Thiore 95.6 0.11 2.3E-06 39.3 8.4 67 118-195 8-76 (184)
206 cd03031 GRX_GRX_like Glutaredo 95.3 0.14 2.9E-06 38.2 7.8 57 104-167 2-72 (147)
207 COG1225 Bcp Peroxiredoxin [Pos 95.3 0.31 6.7E-06 36.7 9.7 89 99-192 29-154 (157)
208 PF13743 Thioredoxin_5: Thiore 95.2 0.098 2.1E-06 40.1 7.1 30 106-135 2-32 (176)
209 cd03066 PDI_b_Calsequestrin_mi 95.2 0.39 8.4E-06 33.1 9.5 95 85-193 2-100 (102)
210 cd03036 ArsC_like Arsenate Red 94.8 0.036 7.8E-07 39.1 3.3 86 105-198 2-92 (111)
211 cd03067 PDI_b_PDIR_N PDIb fami 94.7 0.21 4.7E-06 34.6 6.9 78 87-165 5-91 (112)
212 COG4545 Glutaredoxin-related p 94.5 0.12 2.5E-06 33.8 4.8 57 105-167 5-77 (85)
213 cd02978 KaiB_like KaiB-like fa 94.3 0.15 3.4E-06 33.1 5.2 57 103-159 3-61 (72)
214 PRK10954 periplasmic protein d 94.2 0.055 1.2E-06 42.5 3.6 39 101-139 38-80 (207)
215 cd02977 ArsC_family Arsenate R 94.2 0.061 1.3E-06 37.4 3.4 85 104-197 1-90 (105)
216 PHA03075 glutaredoxin-like pro 94.1 0.11 2.3E-06 36.9 4.4 35 102-139 3-37 (123)
217 cd03060 GST_N_Omega_like GST_N 93.5 0.46 1E-05 30.2 6.4 57 105-165 2-59 (71)
218 COG1331 Highly conserved prote 93.2 0.54 1.2E-05 43.1 8.4 91 83-173 24-131 (667)
219 cd03051 GST_N_GTT2_like GST_N 92.1 0.77 1.7E-05 28.9 6.1 56 105-164 2-61 (74)
220 cd03037 GST_N_GRX2 GST_N famil 92.1 0.69 1.5E-05 29.3 5.8 55 106-164 3-57 (71)
221 cd03069 PDI_b_ERp57 PDIb famil 92.1 2.3 5E-05 29.3 8.8 98 86-193 3-103 (104)
222 PRK09301 circadian clock prote 92.0 1.1 2.3E-05 31.3 6.8 83 103-196 8-92 (103)
223 cd00570 GST_N_family Glutathio 91.6 0.81 1.8E-05 27.9 5.6 55 106-165 3-59 (71)
224 TIGR02654 circ_KaiB circadian 91.5 0.58 1.3E-05 31.6 4.9 71 103-174 5-77 (87)
225 PRK12559 transcriptional regul 91.3 0.23 5.1E-06 36.2 3.2 34 104-142 2-35 (131)
226 PRK01655 spxA transcriptional 91.2 0.18 3.9E-06 36.7 2.5 35 104-143 2-36 (131)
227 cd03013 PRX5_like Peroxiredoxi 90.9 0.58 1.3E-05 34.9 5.1 38 103-140 33-74 (155)
228 cd03041 GST_N_2GST_N GST_N fam 90.8 1 2.2E-05 29.1 5.6 51 104-159 2-56 (77)
229 cd03045 GST_N_Delta_Epsilon GS 90.6 2.2 4.8E-05 26.9 7.1 52 105-159 2-57 (74)
230 cd03068 PDI_b_ERp72 PDIb famil 90.6 3.4 7.3E-05 28.8 8.4 101 85-193 2-107 (107)
231 cd03032 ArsC_Spx Arsenate Redu 90.5 0.3 6.4E-06 34.6 3.0 83 104-196 2-89 (115)
232 cd03059 GST_N_SspA GST_N famil 90.5 1.1 2.5E-05 28.2 5.6 51 105-158 2-53 (73)
233 cd03040 GST_N_mPGES2 GST_N fam 90.2 0.98 2.1E-05 29.0 5.1 53 104-160 2-54 (77)
234 KOG2640 Thioredoxin [Function 90.0 0.059 1.3E-06 44.6 -1.1 75 100-175 76-151 (319)
235 COG0278 Glutaredoxin-related p 89.6 1.7 3.8E-05 30.1 6.0 55 109-167 27-83 (105)
236 TIGR01617 arsC_related transcr 89.4 0.83 1.8E-05 32.4 4.6 83 105-197 2-91 (117)
237 cd03035 ArsC_Yffb Arsenate Red 88.4 0.84 1.8E-05 31.8 4.0 81 105-198 2-89 (105)
238 KOG2507 Ubiquitin regulatory p 88.1 5.8 0.00013 34.6 9.4 76 99-174 17-99 (506)
239 cd03055 GST_N_Omega GST_N fami 87.5 3.3 7.2E-05 27.5 6.4 54 103-159 18-72 (89)
240 PF07689 KaiB: KaiB domain; I 87.3 0.26 5.7E-06 32.9 0.8 53 106-158 2-56 (82)
241 PF13417 GST_N_3: Glutathione 86.7 6.2 0.00014 25.1 7.8 55 106-165 1-56 (75)
242 COG3019 Predicted metal-bindin 86.5 11 0.00023 27.9 8.8 74 103-194 27-104 (149)
243 cd02974 AhpF_NTD_N Alkyl hydro 86.4 8.3 0.00018 26.3 9.0 60 103-174 22-82 (94)
244 PRK13344 spxA transcriptional 86.3 0.87 1.9E-05 33.2 3.2 34 104-142 2-35 (132)
245 cd03056 GST_N_4 GST_N family, 85.8 6.4 0.00014 24.5 7.2 56 105-165 2-61 (73)
246 COG3634 AhpF Alkyl hydroperoxi 85.6 1.2 2.6E-05 38.1 4.0 63 103-167 119-181 (520)
247 PF10587 EF-1_beta_acid: Eukar 84.5 1.3 2.7E-05 23.2 2.3 18 52-69 9-26 (28)
248 PF06764 DUF1223: Protein of u 83.8 12 0.00025 29.5 8.6 79 103-193 1-97 (202)
249 PF06053 DUF929: Domain of unk 83.6 3.6 7.8E-05 33.4 5.8 71 81-160 41-112 (249)
250 PRK15317 alkyl hydroperoxide r 83.3 9.9 0.00021 34.0 9.2 63 101-174 19-82 (517)
251 cd03074 PDI_b'_Calsequestrin_C 83.1 14 0.0003 26.1 10.1 101 87-192 5-118 (120)
252 PF09673 TrbC_Ftype: Type-F co 82.1 11 0.00025 26.5 7.4 45 114-162 36-80 (113)
253 PF06491 Disulph_isomer: Disul 81.7 18 0.00039 26.4 10.7 87 85-173 18-115 (136)
254 cd03052 GST_N_GDAP1 GST_N fami 80.9 12 0.00026 23.8 7.1 56 105-165 2-61 (73)
255 COG1651 DsbG Protein-disulfide 80.8 3.1 6.6E-05 33.2 4.6 29 103-131 87-115 (244)
256 COG1651 DsbG Protein-disulfide 79.9 3.6 7.7E-05 32.8 4.7 27 103-129 121-147 (244)
257 COG2118 DNA-binding protein [G 79.4 2.4 5.3E-05 29.9 3.0 21 51-71 1-21 (116)
258 PF08806 Sep15_SelM: Sep15/Sel 79.1 2.1 4.5E-05 28.3 2.5 36 153-195 41-77 (78)
259 COG1999 Uncharacterized protei 78.4 7 0.00015 30.7 5.8 63 89-151 56-127 (207)
260 TIGR03140 AhpF alkyl hydropero 77.7 21 0.00045 32.0 9.3 63 102-174 20-83 (515)
261 cd03023 DsbA_Com1_like DsbA fa 76.6 5.2 0.00011 28.8 4.4 27 143-174 119-145 (154)
262 TIGR00014 arsC arsenate reduct 75.7 3.3 7.3E-05 29.2 3.0 82 105-199 2-92 (114)
263 TIGR02742 TrbC_Ftype type-F co 75.4 6.9 0.00015 28.5 4.6 26 139-164 57-82 (130)
264 PF04134 DUF393: Protein of un 75.2 5.5 0.00012 27.7 4.0 57 107-164 2-61 (114)
265 cd03022 DsbA_HCCA_Iso DsbA fam 74.5 5.8 0.00013 30.0 4.3 26 144-174 158-183 (192)
266 PF06953 ArsD: Arsenical resis 73.6 28 0.0006 25.1 7.3 63 118-193 29-101 (123)
267 PF10281 Ish1: Putative stress 72.1 5.1 0.00011 22.3 2.6 20 179-198 2-21 (38)
268 cd03025 DsbA_FrnE_like DsbA fa 71.6 4.8 0.0001 30.5 3.2 27 104-130 3-29 (193)
269 PF11287 DUF3088: Protein of u 71.4 11 0.00023 26.7 4.5 49 112-160 24-75 (112)
270 cd03034 ArsC_ArsC Arsenate Red 70.6 4.4 9.6E-05 28.4 2.6 81 105-198 2-90 (112)
271 COG2761 FrnE Predicted dithiol 69.5 9.7 0.00021 30.4 4.5 36 145-192 176-211 (225)
272 PRK10026 arsenate reductase; P 69.1 6.4 0.00014 29.1 3.3 81 104-197 4-92 (141)
273 COG3531 Predicted protein-disu 68.8 8.2 0.00018 30.2 3.9 45 143-193 164-208 (212)
274 cd03053 GST_N_Phi GST_N family 67.6 28 0.0006 21.8 7.5 56 104-164 2-61 (76)
275 cd03024 DsbA_FrnE DsbA family, 67.1 12 0.00027 28.5 4.7 36 143-190 165-200 (201)
276 COG0386 BtuE Glutathione perox 66.3 37 0.0008 25.6 6.7 54 85-139 10-65 (162)
277 COG5429 Uncharacterized secret 65.7 13 0.00029 29.9 4.5 62 103-165 44-123 (261)
278 cd03033 ArsC_15kD Arsenate Red 64.5 14 0.00031 26.0 4.2 34 104-142 2-35 (113)
279 KOG0911 Glutaredoxin-related p 63.4 37 0.00081 27.1 6.6 63 98-166 136-205 (227)
280 PF09444 MRC1: MRC1-like domai 62.6 23 0.0005 26.3 5.1 23 42-65 94-116 (145)
281 cd03049 GST_N_3 GST_N family, 62.0 33 0.00072 21.3 5.3 57 106-164 3-60 (73)
282 PRK10954 periplasmic protein d 59.7 10 0.00022 29.5 3.1 22 144-167 158-179 (207)
283 PF02630 SCO1-SenC: SCO1/SenC; 58.7 8.9 0.00019 29.1 2.5 52 89-140 41-97 (174)
284 cd03044 GST_N_EF1Bgamma GST_N 57.3 46 0.001 20.9 5.7 55 106-164 3-60 (75)
285 COG5494 Predicted thioredoxin/ 55.4 67 0.0015 25.6 6.7 57 106-167 15-71 (265)
286 cd03030 GRX_SH3BGR Glutaredoxi 55.2 23 0.0005 24.0 3.8 36 131-168 30-73 (92)
287 KOG4752 Ribosomal protein L41 54.9 26 0.00057 17.4 3.1 17 57-73 3-19 (26)
288 PRK09481 sspA stringent starva 52.3 92 0.002 23.9 7.4 59 103-166 10-69 (211)
289 PF01216 Calsequestrin: Calseq 52.2 96 0.0021 26.7 7.6 108 83-192 249-366 (383)
290 cd03025 DsbA_FrnE_like DsbA fa 51.6 27 0.00058 26.3 4.1 22 143-164 159-180 (193)
291 PF04592 SelP_N: Selenoprotein 51.3 25 0.00054 28.3 3.9 41 102-142 28-73 (238)
292 cd03050 GST_N_Theta GST_N fami 49.8 63 0.0014 20.2 7.3 55 105-164 2-60 (76)
293 PF05988 DUF899: Bacterial pro 49.5 51 0.0011 26.1 5.4 69 103-171 71-174 (211)
294 KOG3431 Apoptosis-related prot 49.0 17 0.00037 26.1 2.4 19 53-71 2-20 (129)
295 COG1519 KdtA 3-deoxy-D-manno-o 46.1 63 0.0014 28.3 5.9 33 104-136 51-83 (419)
296 PF08776 VASP_tetra: VASP tetr 44.7 59 0.0013 18.5 3.9 25 52-76 1-25 (40)
297 cd03058 GST_N_Tau GST_N family 44.3 77 0.0017 19.7 6.8 54 106-164 3-58 (74)
298 PRK10853 putative reductase; P 43.9 42 0.00092 23.8 3.9 34 104-142 2-35 (118)
299 TIGR03439 methyl_EasF probable 43.5 1.2E+02 0.0027 25.5 7.1 55 102-159 78-134 (319)
300 KOG2792 Putative cytochrome C 42.6 1.5E+02 0.0033 24.4 7.1 53 89-141 128-188 (280)
301 COG1393 ArsC Arsenate reductas 42.6 32 0.00069 24.5 3.0 26 104-129 3-28 (117)
302 PRK13730 conjugal transfer pil 42.5 40 0.00088 26.5 3.8 30 142-172 151-180 (212)
303 PF04908 SH3BGR: SH3-binding, 42.3 22 0.00047 24.6 2.1 82 105-191 3-97 (99)
304 KOG1651 Glutathione peroxidase 41.9 1.6E+02 0.0034 22.5 6.7 41 99-139 33-75 (171)
305 PRK04239 hypothetical protein; 41.0 27 0.00059 24.6 2.4 17 55-71 2-18 (110)
306 PRK10387 glutaredoxin 2; Provi 38.6 1.2E+02 0.0026 23.0 6.1 56 106-165 3-58 (210)
307 PF03960 ArsC: ArsC family; I 38.2 66 0.0014 22.1 4.1 81 107-199 1-89 (110)
308 cd03042 GST_N_Zeta GST_N famil 37.3 97 0.0021 18.8 5.7 50 106-158 3-56 (73)
309 PF04889 Cwf_Cwc_15: Cwf15/Cwc 36.9 67 0.0015 26.0 4.4 17 56-72 155-171 (244)
310 COG2077 Tpx Peroxiredoxin [Pos 35.3 1.2E+02 0.0026 22.8 5.1 60 103-162 48-110 (158)
311 cd03048 GST_N_Ure2p_like GST_N 35.2 1.2E+02 0.0025 19.2 5.7 51 106-159 3-57 (81)
312 PRK11752 putative S-transferas 35.0 1.6E+02 0.0034 23.8 6.4 55 105-159 45-106 (264)
313 TIGR01616 nitro_assoc nitrogen 34.1 94 0.002 22.3 4.4 22 104-125 3-24 (126)
314 cd03039 GST_N_Sigma_like GST_N 34.1 1.1E+02 0.0024 18.7 4.4 54 106-164 3-58 (72)
315 PF05679 CHGN: Chondroitin N-a 32.7 2.7E+02 0.0059 25.0 8.0 36 103-138 284-322 (499)
316 TIGR02182 GRXB Glutaredoxin, G 30.9 1.9E+02 0.0042 22.2 6.1 56 107-166 3-58 (209)
317 COG4604 CeuD ABC-type enteroch 30.9 1.1E+02 0.0023 24.5 4.5 48 113-168 169-217 (252)
318 cd03021 DsbA_GSTK DsbA family, 30.9 76 0.0016 24.5 3.8 29 145-174 171-200 (209)
319 PF09822 ABC_transp_aux: ABC-t 30.6 2.9E+02 0.0062 22.2 10.6 70 84-155 8-90 (271)
320 cd00862 ProRS_anticodon_zinc P 30.5 2.5E+02 0.0055 21.7 6.7 50 60-116 106-158 (202)
321 COG0821 gcpE 1-hydroxy-2-methy 30.3 1.5E+02 0.0032 25.4 5.5 73 112-192 264-349 (361)
322 cd00307 RuBisCO_small_like Rib 30.1 40 0.00086 22.6 1.8 35 106-140 27-71 (84)
323 cd03076 GST_N_Pi GST_N family, 29.1 1.5E+02 0.0032 18.4 5.8 55 105-164 3-58 (73)
324 PF07700 HNOB: Heme NO binding 29.0 1.4E+02 0.0031 22.3 4.9 36 103-138 130-167 (171)
325 PF14424 Toxin-deaminase: The 28.3 1.1E+02 0.0023 22.3 3.9 26 109-137 105-130 (133)
326 cd03038 GST_N_etherase_LigE GS 27.5 1.7E+02 0.0037 18.6 4.7 48 109-159 13-63 (84)
327 KOG2999 Regulator of Rac1, req 27.3 1.1E+02 0.0024 28.0 4.5 63 2-71 482-544 (713)
328 PF00255 GSHPx: Glutathione pe 26.1 84 0.0018 22.0 2.9 42 99-141 20-63 (108)
329 PF10865 DUF2703: Domain of un 26.1 1.7E+02 0.0037 20.9 4.5 62 106-172 7-78 (120)
330 PHA02151 hypothetical protein 26.1 40 0.00086 25.5 1.3 11 103-113 206-216 (217)
331 cd03061 GST_N_CLIC GST_N famil 26.0 2.1E+02 0.0046 19.2 6.3 50 110-164 20-70 (91)
332 PHA02131 hypothetical protein 25.8 26 0.00057 21.5 0.3 20 149-168 24-43 (70)
333 PF06180 CbiK: Cobalt chelatas 25.7 1.1E+02 0.0023 25.1 3.8 35 103-137 4-39 (262)
334 PF02310 B12-binding: B12 bind 25.4 2.2E+02 0.0049 19.3 5.4 49 89-137 39-87 (121)
335 TIGR02743 TraW type-F conjugat 25.0 1E+02 0.0022 24.3 3.5 26 139-165 171-196 (202)
336 PF04551 GcpE: GcpE protein; 24.4 49 0.0011 28.3 1.7 56 131-193 298-358 (359)
337 COG4097 Predicted ferric reduc 23.6 5.1E+02 0.011 22.8 7.8 79 100-195 342-425 (438)
338 KOG2824 Glutaredoxin-related p 23.1 94 0.002 25.7 3.0 58 103-167 133-203 (281)
339 cd00317 cyclophilin cyclophili 22.8 2.1E+02 0.0045 20.5 4.7 38 100-139 6-44 (146)
340 cd03024 DsbA_FrnE DsbA family, 22.7 1.4E+02 0.0031 22.5 4.0 25 106-130 3-27 (201)
341 cd03022 DsbA_HCCA_Iso DsbA fam 22.4 94 0.002 23.2 2.9 25 106-130 3-27 (192)
342 COG1148 HdrA Heterodisulfide r 21.7 1.7E+02 0.0037 26.6 4.6 75 56-143 310-414 (622)
343 cd06353 PBP1_BmpA_Med_like Per 21.6 2.2E+02 0.0049 22.7 5.1 26 114-139 64-89 (258)
344 PRK13738 conjugal transfer pil 21.5 1.5E+02 0.0032 23.5 3.8 27 139-165 169-196 (209)
345 cd01716 Hfq Hfq, an abundant, 21.5 1.7E+02 0.0036 18.3 3.3 29 147-175 5-34 (61)
346 PLN02473 glutathione S-transfe 20.9 3.8E+02 0.0082 20.3 7.6 56 106-166 4-64 (214)
347 PF04900 Fcf1: Fcf1; InterPro 20.7 2E+02 0.0043 19.4 3.9 39 118-160 53-92 (101)
348 cd03054 GST_N_Metaxin GST_N fa 20.5 2.2E+02 0.0047 17.4 6.0 44 110-164 14-57 (72)
349 cd06194 FNR_N-term_Iron_sulfur 20.4 3.2E+02 0.0069 20.9 5.6 33 105-137 129-161 (222)
350 PF02702 KdpD: Osmosensitive K 20.3 4.5E+02 0.0097 20.9 6.4 62 106-167 10-72 (211)
351 PRK00964 tetrahydromethanopter 20.2 25 0.00053 28.0 -0.8 84 109-197 46-134 (225)
No 1
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=1.8e-37 Score=233.73 Aligned_cols=179 Identities=52% Similarity=0.837 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEc-ChhHHHHHHhC
Q 029057 21 AAARDYQKELLDKEKAQASSSNDEVDLDELMDDPELEKLHADRIAALKKEAEKRQVLQMKGHGEYREI-GEGDFLAEVTG 99 (200)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~dld~l~dd~~le~~r~~R~~el~~~~~~~~~~~~~~~g~v~~i-~~~~~~~~v~~ 99 (200)
.+...+..+.+...+..++..+++.+.++++|+++++..|++|+++|++.+.+++.|...|||.+.+| ++.+|.+.+++
T Consensus 4 ~~~~~~~~qvl~~~ka~~~~~d~e~~~le~~d~~dle~lr~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~k 83 (211)
T KOG1672|consen 4 NAAKILEKQVLTAAKAVEEQLDEELDKLENMDEDDLEVLREQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEVKK 83 (211)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhhc
Confidence 34556666777766665555677777888889999999999999999999999999999999999999 79999999999
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCC
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKD 179 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~ 179 (200)
+..||+|||.|...+|+.|..+|+.||.+|.+++|++||+..+|+++.+++|+.+||+.+|+||+.+.+++||.++||.+
T Consensus 84 S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkD 163 (211)
T KOG1672|consen 84 SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKD 163 (211)
T ss_pred CceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCcccC
Q 029057 180 DFTTKTLEVLLVKKGIASAL 199 (200)
Q Consensus 180 ~~~~e~Le~~L~~~~vi~~~ 199 (200)
+|+++.||+.|.++|+|.-+
T Consensus 164 dF~te~LE~rL~~S~vi~~~ 183 (211)
T KOG1672|consen 164 DFTTETLENRLAKSGVIDYT 183 (211)
T ss_pred cCcHHHHHHHHhhccceecc
Confidence 99999999999999988644
No 2
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=1.8e-34 Score=224.14 Aligned_cols=133 Identities=34% Similarity=0.581 Sum_probs=121.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEcChhHHHHHHhCCC---cEEEEEecCCChhhHHHHHHHHHHhhh
Q 029057 52 DDPELEKLHADRIAALKKEAEKRQVLQMKGHGEYREIGEGDFLAEVTGSE---KAICHFYHKEFYRCKIMDKHLKALAPK 128 (200)
Q Consensus 52 dd~~le~~r~~R~~el~~~~~~~~~~~~~~~g~v~~i~~~~~~~~v~~~~---~vvV~Fy~~~c~~C~~~~~~l~~la~~ 128 (200)
||.+|++||++|+++|++...+ .+||.+.+++..+|...+..++ .||||||++||++|+.|.|+|..||.+
T Consensus 57 d~~~Le~yR~kRl~el~~~~~~------~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k 130 (192)
T cd02988 57 DDRFLEEYRRKRLAEMKALAEK------SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARK 130 (192)
T ss_pred cHHHHHHHHHHHHHHHHHhhhh------CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHH
Confidence 3449999999999999886543 3899999999999998887553 499999999999999999999999999
Q ss_pred cCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHcC
Q 029057 129 HIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKG 194 (200)
Q Consensus 129 ~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~ 194 (200)
|+.++|++||++.+ +.+|++.++||+++|++|+.+.+++|+.++||. +|+.+.|+++|.++|
T Consensus 131 ~~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~-~~~~~~lE~~L~~~g 192 (192)
T cd02988 131 FPDTKFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGM-NTTMEDLEWLLVQVG 192 (192)
T ss_pred CCCCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCC-CCCHHHHHHHHHhcC
Confidence 99999999999875 689999999999999999999999999999988 999999999999876
No 3
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=9.5e-35 Score=222.96 Aligned_cols=135 Identities=21% Similarity=0.387 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEcCh-hHHHHHHhCCC---cEEEEEecCCChhhHHHHHHHHHHhhh
Q 029057 53 DPELEKLHADRIAALKKEAEKRQVLQMKGHGEYREIGE-GDFLAEVTGSE---KAICHFYHKEFYRCKIMDKHLKALAPK 128 (200)
Q Consensus 53 d~~le~~r~~R~~el~~~~~~~~~~~~~~~g~v~~i~~-~~~~~~v~~~~---~vvV~Fy~~~c~~C~~~~~~l~~la~~ 128 (200)
|++|++||++|++||++...++ ..||.+.+|+. ++|...+..++ .||||||++||++|+.|.|.|..+|.+
T Consensus 37 e~~l~~~R~~R~~el~~~~~~~-----~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~ 111 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKLPFG-----RRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAE 111 (175)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-----CCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHH
Confidence 5699999999999999986443 36999999977 99999998665 599999999999999999999999999
Q ss_pred cCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHcC
Q 029057 129 HIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKG 194 (200)
Q Consensus 129 ~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~ 194 (200)
|+.++|++||++.+ .++.+|+|.++||+++|++|+.+.+++|+...++. +|+++.|+++|.++|
T Consensus 112 ~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~-~f~~~~le~~L~~~g 175 (175)
T cd02987 112 YPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE-DFDAEDLESFLVEYG 175 (175)
T ss_pred CCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC-CCCHHHHHHHHHhcC
Confidence 99999999999988 89999999999999999999999999999998886 999999999999886
No 4
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.97 E-value=2.8e-29 Score=203.34 Aligned_cols=143 Identities=34% Similarity=0.566 Sum_probs=115.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEc-ChhHHHHHHhCCCc---EEEEEecCCChhhHHHHHHHHH
Q 029057 49 ELMDDPELEKLHADRIAALKKEAEKRQVLQMKGHGEYREI-GEGDFLAEVTGSEK---AICHFYHKEFYRCKIMDKHLKA 124 (200)
Q Consensus 49 ~l~dd~~le~~r~~R~~el~~~~~~~~~~~~~~~g~v~~i-~~~~~~~~v~~~~~---vvV~Fy~~~c~~C~~~~~~l~~ 124 (200)
+++||++|++||++|++||+++..+. ..||.+.+| +++.|.++|.+... ||||||.+.++.|..|..+|..
T Consensus 96 d~eDeefL~~yR~qRm~El~~~~~~~-----~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~ 170 (265)
T PF02114_consen 96 DEEDEEFLEQYREQRMQELKQKLQKG-----PRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLEC 170 (265)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH------------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhC-----CcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHH
Confidence 45477899999999999998766542 259999999 67899999976554 9999999999999999999999
Q ss_pred HhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHcCCccc
Q 029057 125 LAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGIASA 198 (200)
Q Consensus 125 la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~vi~~ 198 (200)
||.+||.|+|++|.+..++ ++.+|++.++||+++|++|..+++++|+...+| ++|+...||++|.++|+|+.
T Consensus 171 LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g-~df~~~dlE~~L~~~G~l~~ 242 (265)
T PF02114_consen 171 LARKYPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG-DDFFTEDLEAFLIEYGVLPE 242 (265)
T ss_dssp HHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT--TT--HHHHHHHHHTTTSSS-
T ss_pred HHHhCCceEEEEEehhccC-cccCCcccCCCEEEEEECCEEEEeEEehHHhcC-CCCCHHHHHHHHHHcCCCCC
Confidence 9999999999999999887 789999999999999999999999999999888 57999999999999999975
No 5
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.96 E-value=1.6e-27 Score=170.68 Aligned_cols=111 Identities=61% Similarity=1.116 Sum_probs=106.6
Q ss_pred CCCceEEc-ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEE
Q 029057 81 GHGEYREI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVII 159 (200)
Q Consensus 81 ~~g~v~~i-~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~ 159 (200)
+||.+.+| +.++|.+.+.++..|+|+||++||++|+.+.|.+++++++|++++|++||+++.+.++++|+|.++||+++
T Consensus 2 ~~g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 2 GHGKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCCCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 79999999 45999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 160 LRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 160 ~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
|++|+.+.++.|+.+++|.++++.+.||++|.
T Consensus 82 fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~~ 113 (113)
T cd02989 82 FKNGKTVDRIVGFEELGGKDDFSTETLEKRLA 113 (113)
T ss_pred EECCEEEEEEECccccCCCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999983
No 6
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.94 E-value=2.8e-26 Score=164.24 Aligned_cols=108 Identities=52% Similarity=0.900 Sum_probs=102.5
Q ss_pred CCCceEEcChhHHHHHHhCC---CcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEE
Q 029057 81 GHGEYREIGEGDFLAEVTGS---EKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCV 157 (200)
Q Consensus 81 ~~g~v~~i~~~~~~~~v~~~---~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl 157 (200)
.+|.+.+++.++|.+.+... ..++|+||+|||++|+.+.|.+++++.+|++++|++||++++ .++.+|+|.++||+
T Consensus 2 ~~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~ 80 (113)
T cd02957 2 GFGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTL 80 (113)
T ss_pred CCceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEE
Confidence 58999999889999998876 569999999999999999999999999999999999999998 99999999999999
Q ss_pred EEEeCCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 158 IILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 158 ~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
++|++|+.+.++.|..+.++ +.|+.+.|+++|
T Consensus 81 ~~f~~G~~v~~~~G~~~~~~-~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGELIDNIVGFEELGG-DDFTTEDLEKFL 112 (113)
T ss_pred EEEECCEEEEEEecHHHhCC-CCCCHHHHHHHh
Confidence 99999999999999999988 899999999987
No 7
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-25 Score=169.97 Aligned_cols=145 Identities=28% Similarity=0.480 Sum_probs=129.9
Q ss_pred cccccccCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEcChhHHHHHHhCCCc---EEEEEecCCChhhHHHH
Q 029057 43 DEVDLDELMDDPELEKLHADRIAALKKEAEKRQVLQMKGHGEYREIGEGDFLAEVTGSEK---AICHFYHKEFYRCKIMD 119 (200)
Q Consensus 43 ~~~dld~l~dd~~le~~r~~R~~el~~~~~~~~~~~~~~~g~v~~i~~~~~~~~v~~~~~---vvV~Fy~~~c~~C~~~~ 119 (200)
+.+|..+++|+.|||.||.+|++|+++...++ .||.|.+|+..+|..+|+..+. ||||.|...-+.|+.+.
T Consensus 57 elEDded~dDerfLE~YR~kRl~E~r~~~~k~------kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~ 130 (240)
T KOG3170|consen 57 ELEDDEDSDDERFLEMYRIKRLAEWRATAEKA------KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLS 130 (240)
T ss_pred HhhhcccccHHHHHHHHHHHHHHHHHHHHHHh------cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHH
Confidence 33333444345599999999999999988775 6999999999999999987765 99999999999999999
Q ss_pred HHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHcC-Ccc
Q 029057 120 KHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKG-IAS 197 (200)
Q Consensus 120 ~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~-vi~ 197 (200)
.+|..+|.+||.++|++|-.+.+ ..+|+-.++||+++|..|.+..+++|+..+||. +.+.+.|+.+|.++| ++.
T Consensus 131 ~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~-n~t~ed~e~~L~qaga~l~ 205 (240)
T KOG3170|consen 131 HHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTLLVYHHGALKKQMIGLLELGGM-NLTMEDVEDFLVQAGAALT 205 (240)
T ss_pred HHHHHHhhcCCcceEEecccccc---cCCCcccCCCeEEEeecchHHhheehhhhhcCC-cCCHHHHHHHHHhcccccc
Confidence 99999999999999999999988 778999999999999999999999999999997 889999999999999 444
No 8
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.8e-25 Score=159.95 Aligned_cols=102 Identities=24% Similarity=0.419 Sum_probs=93.4
Q ss_pred ceEEcChhHHHHHHhCCCc-EEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 84 EYREIGEGDFLAEVTGSEK-AICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
.+...+..+|.+.+.+++. |+|.|||+||+||+.+.|.+++++.+|.+ ++|++||.++++.++.+|+|..+||+++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 4555689999999887765 99999999999999999999999999987 999999999999999999999999999999
Q ss_pred CCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 162 KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 162 ~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
||+.+.+++|..+ .+.|+.++.+.
T Consensus 124 nGe~~d~~vG~~~--------~~~l~~~i~k~ 147 (150)
T KOG0910|consen 124 NGEKVDRFVGAVP--------KEQLRSLIKKF 147 (150)
T ss_pred CCEEeeeecccCC--------HHHHHHHHHHH
Confidence 9999999999987 57888887754
No 9
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.90 E-value=2.9e-23 Score=147.64 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=80.3
Q ss_pred hhHHHHHHhC--CCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEE
Q 029057 90 EGDFLAEVTG--SEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 90 ~~~~~~~v~~--~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
.++|...+.. .+.+||+|||+||++|+.|.|.+.+++.+|++ +.|++||+++++.++.+|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 5678888763 44599999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred EEEeccccCCCC
Q 029057 167 DRLVGFQDLGGK 178 (200)
Q Consensus 167 ~~~~G~~~~g~~ 178 (200)
.+.+|..+...+
T Consensus 82 ~~~~G~~~~~~~ 93 (114)
T cd02954 82 KIDLGTGNNNKI 93 (114)
T ss_pred EEEcCCCCCceE
Confidence 999998765443
No 10
>PHA02278 thioredoxin-like protein
Probab=99.89 E-value=1.6e-22 Score=142.26 Aligned_cols=86 Identities=12% Similarity=0.182 Sum_probs=77.6
Q ss_pred ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC-CceEEEEeCCCC----hhHHHhCCCCCccEEEEEeCC
Q 029057 89 GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI-GTKFIKLDAENA----PFFVTKLGIKTLPCVIILRKG 163 (200)
Q Consensus 89 ~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~-~v~f~~i~~~~~----~~l~~~~~i~~~Ptl~~~~~G 163 (200)
+.++|...+.+.+.+||+|||+||++|+.+.|.++++++++. .+.|++||++.+ +.++.+|+|.++||+++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 457888888778889999999999999999999999998854 378999999986 689999999999999999999
Q ss_pred eEEEEEecccc
Q 029057 164 IAIDRLVGFQD 174 (200)
Q Consensus 164 ~~~~~~~G~~~ 174 (200)
+.+.++.|..+
T Consensus 83 ~~v~~~~G~~~ 93 (103)
T PHA02278 83 QLVKKYEDQVT 93 (103)
T ss_pred EEEEEEeCCCC
Confidence 99999999765
No 11
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.89 E-value=3e-22 Score=141.02 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=85.2
Q ss_pred ChhHHHHHHhC--CCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh---hHHHhCCCCCccEEEEEeCC
Q 029057 89 GEGDFLAEVTG--SEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP---FFVTKLGIKTLPCVIILRKG 163 (200)
Q Consensus 89 ~~~~~~~~v~~--~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~---~l~~~~~i~~~Ptl~~~~~G 163 (200)
+.++|.+.+.+ ++.|||+||++||++|+.+.|.+.++++.|+++.|++||+++++ .++.+|+|.++||+++|++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 46788888865 34599999999999999999999999999988999999999874 78999999999999999999
Q ss_pred eEEEEEeccccCCCCCCCcHHHHHHHHHHcC
Q 029057 164 IAIDRLVGFQDLGGKDDFTTKTLEVLLVKKG 194 (200)
Q Consensus 164 ~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~ 194 (200)
+.+.++.|..+ +.|...+..+|
T Consensus 82 ~~v~~~~G~~~---------~~l~~~~~~~~ 103 (103)
T cd02985 82 EKIHEEEGIGP---------DELIGDVLYYG 103 (103)
T ss_pred eEEEEEeCCCH---------HHHHHHHHhcC
Confidence 99999999874 67777766654
No 12
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.89 E-value=7.7e-22 Score=137.74 Aligned_cols=101 Identities=22% Similarity=0.390 Sum_probs=93.6
Q ss_pred eEEcChhHHHHHHhC-CCcEEEEEecCCChhhHHHHHHHHHHhhhcC-CceEEEEeCCCChhHHHhCCCCCccEEEEEeC
Q 029057 85 YREIGEGDFLAEVTG-SEKAICHFYHKEFYRCKIMDKHLKALAPKHI-GTKFIKLDAENAPFFVTKLGIKTLPCVIILRK 162 (200)
Q Consensus 85 v~~i~~~~~~~~v~~-~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~-~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~ 162 (200)
|..+|.++|.+.+.+ ...+||.||++||++|+.+.|.|.++++.++ ++.|+.||+++++.++++|+|.++||+++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 356799999999987 5669999999999999999999999999999 69999999999999999999999999999999
Q ss_pred CeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 163 GIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 163 G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
|+...++.|... .+.|..+|.++
T Consensus 81 g~~~~~~~g~~~--------~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRN--------AESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSS--------HHHHHHHHHHH
T ss_pred CcEEEEEECCCC--------HHHHHHHHHcC
Confidence 999999999865 79999999874
No 13
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.2e-22 Score=140.45 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=78.1
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCC
Q 029057 101 EKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDD 180 (200)
Q Consensus 101 ~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~ 180 (200)
..+||+|||+|||||+.+.|.+.+|+.+|+++.|++||+++++.++..++|.++||+++|++|+.+.+++|...
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~------ 95 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK------ 95 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH------
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CcHHHHHHHHHHc
Q 029057 181 FTTKTLEVLLVKK 193 (200)
Q Consensus 181 ~~~e~Le~~L~~~ 193 (200)
..|++.+..+
T Consensus 96 ---~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 ---AELEKKIAKH 105 (106)
T ss_pred ---HHHHHHHHhc
Confidence 5777777654
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.88 E-value=7.8e-22 Score=142.07 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=91.9
Q ss_pred CCCceEEcChhHHHHHHhCCCc-EEEEEecCCChh--hH--HHHHHHHHHhhhc--CC-ceEEEEeCCCChhHHHhCCCC
Q 029057 81 GHGEYREIGEGDFLAEVTGSEK-AICHFYHKEFYR--CK--IMDKHLKALAPKH--IG-TKFIKLDAENAPFFVTKLGIK 152 (200)
Q Consensus 81 ~~g~v~~i~~~~~~~~v~~~~~-vvV~Fy~~~c~~--C~--~~~~~l~~la~~~--~~-v~f~~i~~~~~~~l~~~~~i~ 152 (200)
|...+..+|.++|.+.+.+++. +|++||++||++ |+ ++.|.+.++|.++ .+ ++|++||+++++.++.+|+|+
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 5557888999999999988876 888889999987 99 8999999999998 54 999999999999999999999
Q ss_pred CccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 153 TLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 153 ~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
++||+++|++|+.+. +.|..+ .+.|..+|.+
T Consensus 87 ~iPTl~lfk~G~~v~-~~G~~~--------~~~l~~~l~~ 117 (120)
T cd03065 87 EEDSIYVFKDDEVIE-YDGEFA--------ADTLVEFLLD 117 (120)
T ss_pred cccEEEEEECCEEEE-eeCCCC--------HHHHHHHHHH
Confidence 999999999999887 889876 6788888875
No 15
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=7.3e-22 Score=141.09 Aligned_cols=93 Identities=10% Similarity=0.056 Sum_probs=83.6
Q ss_pred CCceEEcChhHHHHH---HhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHH-HhCCCCCccE
Q 029057 82 HGEYREIGEGDFLAE---VTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFV-TKLGIKTLPC 156 (200)
Q Consensus 82 ~g~v~~i~~~~~~~~---v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~-~~~~i~~~Pt 156 (200)
.+.+.+++.++|.+. +.....++|.||+|||++|+.+.|.++++++.+.+ +.|++||++.++.++ ++|+|.++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 356889999999987 34556699999999999999999999999999987 899999999999999 5899999999
Q ss_pred EEEEeCCeEEEEEecccc
Q 029057 157 VIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 157 l~~~~~G~~~~~~~G~~~ 174 (200)
+++|++|+...++.|...
T Consensus 88 l~lf~~g~~~~~y~G~~~ 105 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMR 105 (113)
T ss_pred EEEEECCccceEEeCCCC
Confidence 999999998888888775
No 16
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=6.9e-22 Score=138.46 Aligned_cols=91 Identities=18% Similarity=0.370 Sum_probs=83.4
Q ss_pred ceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeC
Q 029057 84 EYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRK 162 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~ 162 (200)
.+.+++.++|...+..+..++|.||++||++|+.+.|.+.++++++++ ++|++||+++++.++++|+|.++||+++|++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 367889999999997777799999999999999999999999999986 8999999999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 029057 163 GIAIDRLVGFQD 174 (200)
Q Consensus 163 G~~~~~~~G~~~ 174 (200)
|+.+.++.|..+
T Consensus 82 g~~~~~~~G~~~ 93 (101)
T cd03003 82 GMNPEKYYGDRS 93 (101)
T ss_pred CCCcccCCCCCC
Confidence 998888777654
No 17
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.86 E-value=8.6e-21 Score=133.35 Aligned_cols=94 Identities=12% Similarity=0.180 Sum_probs=84.2
Q ss_pred ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEE
Q 029057 89 GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 89 ~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
+.++|...+.+++.++|+||++||++|+.+.|.+..++..+++ +.|+.+|++ .+.++++|+|+++||+++|++|+.+
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 7889999888777799999999999999999999999999974 789999999 7889999999999999999999999
Q ss_pred EEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 167 DRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 167 ~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
.++.|.. .+.+.++|.+
T Consensus 85 ~~~~G~~---------~~~~~~~i~~ 101 (102)
T cd02948 85 AVIRGAN---------APLLNKTITE 101 (102)
T ss_pred EEEecCC---------hHHHHHHHhh
Confidence 9999964 3677777654
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=157.74 Aligned_cols=103 Identities=24% Similarity=0.432 Sum_probs=95.3
Q ss_pred ceEEcChhHHHHHHhCCC---cEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEE
Q 029057 84 EYREIGEGDFLAEVTGSE---KAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVII 159 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~---~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~ 159 (200)
.+.++|..+|...|..++ +|+|+||+|||++|+.+.|.+++++..|.+ +++++|||+.+|.++..|||+++||+++
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 488899999999987554 399999999999999999999999999998 9999999999999999999999999999
Q ss_pred EeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHcC
Q 029057 160 LRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKG 194 (200)
Q Consensus 160 ~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~ 194 (200)
|++|+++..|.|..+ .+.|..||.++.
T Consensus 104 f~dGqpVdgF~G~qP--------esqlr~~ld~~~ 130 (304)
T COG3118 104 FKDGQPVDGFQGAQP--------ESQLRQFLDKVL 130 (304)
T ss_pred eeCCcCccccCCCCc--------HHHHHHHHHHhc
Confidence 999999999999987 678999988764
No 19
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.86 E-value=3.6e-21 Score=135.40 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=81.9
Q ss_pred ceEEcChhHHHHHHhCCC-cEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 84 EYREIGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~-~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
.+.+++.++|...+..++ .++|+||++||++|+.+.|.+.+++.++.+ +.|++||++.++.++++|+|.++||+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 367889999999887654 599999999999999999999999999875 899999999999999999999999999998
Q ss_pred CC-eEEEEEecccc
Q 029057 162 KG-IAIDRLVGFQD 174 (200)
Q Consensus 162 ~G-~~~~~~~G~~~ 174 (200)
+| +.+.++.|...
T Consensus 82 ~g~~~~~~~~G~~~ 95 (104)
T cd03004 82 GNASKYHSYNGWHR 95 (104)
T ss_pred CCCCCceEccCCCC
Confidence 87 88888888753
No 20
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.86 E-value=7.1e-21 Score=134.54 Aligned_cols=91 Identities=12% Similarity=0.211 Sum_probs=85.1
Q ss_pred ceEEcChhHHHHHHhCCCcEEEEEecCC--ChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEE
Q 029057 84 EYREIGEGDFLAEVTGSEKAICHFYHKE--FYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIIL 160 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~vvV~Fy~~~--c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~ 160 (200)
.+..+++.+|.+.+...+.+||.||++| ||+|+.+.|.|.+++++|++ +.|++||+++++.++.+|+|+++||+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF 90 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 3678899999988877778999999997 99999999999999999998 88999999999999999999999999999
Q ss_pred eCCeEEEEEecccc
Q 029057 161 RKGIAIDRLVGFQD 174 (200)
Q Consensus 161 ~~G~~~~~~~G~~~ 174 (200)
++|+.+.++.|..+
T Consensus 91 kdGk~v~~~~G~~~ 104 (111)
T cd02965 91 RDGRYVGVLAGIRD 104 (111)
T ss_pred ECCEEEEEEeCccC
Confidence 99999999999875
No 21
>PRK10996 thioredoxin 2; Provisional
Probab=99.85 E-value=3.2e-20 Score=137.52 Aligned_cols=103 Identities=17% Similarity=0.331 Sum_probs=92.7
Q ss_pred CceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 83 GEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
|.+..++..+|...+.++..++|+||++||++|+.+.|.|.+++.++.+ +.|+++|++.++.++.+|+|.++||+++|+
T Consensus 35 ~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 35 GEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence 3456678899999887777799999999999999999999999998875 999999999999999999999999999999
Q ss_pred CCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 162 KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 162 ~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
+|+.+.++.|..+ .+.++.+|.++
T Consensus 115 ~G~~v~~~~G~~~--------~e~l~~~l~~~ 138 (139)
T PRK10996 115 NGQVVDMLNGAVP--------KAPFDSWLNEA 138 (139)
T ss_pred CCEEEEEEcCCCC--------HHHHHHHHHHh
Confidence 9999999999765 68899988763
No 22
>PRK09381 trxA thioredoxin; Provisional
Probab=99.85 E-value=3.3e-20 Score=131.57 Aligned_cols=102 Identities=20% Similarity=0.344 Sum_probs=90.5
Q ss_pred ceEEcChhHHHHHHhC-CCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 84 EYREIGEGDFLAEVTG-SEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~-~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
.+.++++++|...+.+ +..++|+||++||++|+.+.|.++++++++++ +.|+.+|++..+.++.+|+++++||+++|+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEe
Confidence 4778888999987654 45599999999999999999999999999976 899999999999999999999999999999
Q ss_pred CCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 162 KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 162 ~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
+|+.+.++.|..+ .+.|+.+|..+
T Consensus 84 ~G~~~~~~~G~~~--------~~~l~~~i~~~ 107 (109)
T PRK09381 84 NGEVAATKVGALS--------KGQLKEFLDAN 107 (109)
T ss_pred CCeEEEEecCCCC--------HHHHHHHHHHh
Confidence 9999999988865 57788887754
No 23
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.85 E-value=1.4e-20 Score=133.48 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=79.7
Q ss_pred ceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhc----C---CceEEEEeCCCChhHHHhCCCCCccE
Q 029057 84 EYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKH----I---GTKFIKLDAENAPFFVTKLGIKTLPC 156 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~----~---~v~f~~i~~~~~~~l~~~~~i~~~Pt 156 (200)
.+.++++++|...+..++.++|+||+|||++|+.+.|.+.+++..+ + .+.|++||++.++.++.+|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 4778899999998877777999999999999999999999998764 2 38999999999999999999999999
Q ss_pred EEEEeCCeE-EEEEecccc
Q 029057 157 VIILRKGIA-IDRLVGFQD 174 (200)
Q Consensus 157 l~~~~~G~~-~~~~~G~~~ 174 (200)
+++|++|+. ...+.|...
T Consensus 82 l~~~~~g~~~~~~~~g~~~ 100 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRS 100 (108)
T ss_pred EEEEeCCcCcceecCCCCC
Confidence 999999984 466667554
No 24
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=3.5e-20 Score=138.84 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=92.9
Q ss_pred CCCceEEcChhHHHHHHhCC--CcEEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCChhHHHhCCCCC---
Q 029057 81 GHGEYREIGEGDFLAEVTGS--EKAICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENAPFFVTKLGIKT--- 153 (200)
Q Consensus 81 ~~g~v~~i~~~~~~~~v~~~--~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~~~l~~~~~i~~--- 153 (200)
+.+.+.++++++|.+.+..+ ..++|+||++||++|+.+.|.+.++++++. +++|++||+++++.++.+|+|.+
T Consensus 26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCC
Confidence 34578888999999887544 359999999999999999999999999986 39999999999999999999988
Q ss_pred ---ccEEEEEeCCeEEEEEeccccC-CC--CCCCcHHHHHHHH
Q 029057 154 ---LPCVIILRKGIAIDRLVGFQDL-GG--KDDFTTKTLEVLL 190 (200)
Q Consensus 154 ---~Ptl~~~~~G~~~~~~~G~~~~-g~--~~~~~~e~Le~~L 190 (200)
+||+++|++|+.+.++.|+... |+ ...|+.+.+.+..
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred cCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHhc
Confidence 9999999999999999996543 33 2566776666543
No 25
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.85 E-value=2.9e-20 Score=137.03 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=84.4
Q ss_pred EEc-ChhHHHHHHhC--CCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEE-EE
Q 029057 86 REI-GEGDFLAEVTG--SEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVI-IL 160 (200)
Q Consensus 86 ~~i-~~~~~~~~v~~--~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~-~~ 160 (200)
..+ +.++|.+.+.. ...|||.|||+||++|+.+.|.|.++++++++ +.|++||++++++++..|+|.+.|+++ +|
T Consensus 6 ~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred hhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEE
Confidence 345 78899998863 33499999999999999999999999999998 888999999999999999999777666 88
Q ss_pred eCCe-EEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 161 RKGI-AIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 161 ~~G~-~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
++|+ .+.+.+|....-+..--+.++|...+.
T Consensus 86 k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~ 117 (142)
T PLN00410 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
T ss_pred ECCeEEEEEecccccccccccCCHHHHHHHHH
Confidence 9999 899999954321111123455555544
No 26
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.85 E-value=2.5e-20 Score=129.16 Aligned_cols=91 Identities=22% Similarity=0.367 Sum_probs=80.6
Q ss_pred HHHHHHhCC--CcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEE
Q 029057 92 DFLAEVTGS--EKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDR 168 (200)
Q Consensus 92 ~~~~~v~~~--~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~ 168 (200)
+|.+.+.++ ..++|+||++||++|+.+.|.+.+++..+++ +.|++||++.++.++.+|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566677544 3599999999999999999999999999976 8899999999999999999999999999999999999
Q ss_pred EeccccCCCCCCCcHHHHHHHH
Q 029057 169 LVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 169 ~~G~~~~g~~~~~~~e~Le~~L 190 (200)
+.|..+ .+.|..+|
T Consensus 82 ~~g~~~--------~~~l~~~l 95 (96)
T cd02956 82 FQGAQP--------EEQLRQML 95 (96)
T ss_pred ecCCCC--------HHHHHHHh
Confidence 989765 57777765
No 27
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.84 E-value=2.6e-20 Score=132.86 Aligned_cols=98 Identities=11% Similarity=0.146 Sum_probs=85.8
Q ss_pred EcChhHHHHHHh---CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 87 EIGEGDFLAEVT---GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 87 ~i~~~~~~~~v~---~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
.++..+|.+.+. .+.+++|+||+|||++|+.+.|.+.+++++++ ++.|++||++..+.++.+|+|.++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 457788887654 34569999999999999999999999999996 4899999999999999999999999999999
Q ss_pred CCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 162 KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 162 ~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+|+.+.++.|..+ .+.|..+|.+
T Consensus 88 ~g~~~~~~~G~~~--------~~~l~~~i~~ 110 (111)
T cd02963 88 NGQVTFYHDSSFT--------KQHVVDFVRK 110 (111)
T ss_pred CCEEEEEecCCCC--------HHHHHHHHhc
Confidence 9999999889765 5778888765
No 28
>PTZ00051 thioredoxin; Provisional
Probab=99.84 E-value=2.7e-20 Score=129.41 Aligned_cols=89 Identities=19% Similarity=0.372 Sum_probs=81.9
Q ss_pred eEEc-ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCC
Q 029057 85 YREI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG 163 (200)
Q Consensus 85 v~~i-~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G 163 (200)
+.++ +.++|...+..+..++|+||++||++|+.+.|.+..+++.+++++|+.+|+++++.++.+|++.++||+++|++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 4456 677888887777779999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 029057 164 IAIDRLVGFQ 173 (200)
Q Consensus 164 ~~~~~~~G~~ 173 (200)
+.+.++.|..
T Consensus 82 ~~~~~~~G~~ 91 (98)
T PTZ00051 82 SVVDTLLGAN 91 (98)
T ss_pred eEEEEEeCCC
Confidence 9999999975
No 29
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.84 E-value=2.5e-20 Score=130.25 Aligned_cols=97 Identities=19% Similarity=0.371 Sum_probs=85.8
Q ss_pred eEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC----CceEEEEeCCCChhHHHhCCCCCccEEEEE
Q 029057 85 YREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI----GTKFIKLDAENAPFFVTKLGIKTLPCVIIL 160 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~----~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~ 160 (200)
+..+++++|...+.++ .++|.||++||++|+.+.|.+.++++++. .+.|++||++.++.++++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5678999999998655 59999999999999999999999999885 389999999999999999999999999999
Q ss_pred eCCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 161 RKGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 161 ~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
++|+.+.++.|..+ .+.|..+|
T Consensus 81 ~~g~~~~~~~G~~~--------~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRD--------LDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCC--------HHHHHhhC
Confidence 99999889999875 46666553
No 30
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.84 E-value=4.3e-20 Score=129.17 Aligned_cols=97 Identities=16% Similarity=0.287 Sum_probs=84.0
Q ss_pred ceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 84 EYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
.+.++++++|...+. +.++|.||++||++|+.+.|.|.+++..+. ++.|+++|+++++.++.+|+|.++||+++|+
T Consensus 2 ~v~~l~~~~f~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLE--GEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhC--CCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 367889999998763 348899999999999999999999998875 4899999999999999999999999999999
Q ss_pred CCeEEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 162 KGIAIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 162 ~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
+|+. .++.|... .+.|..++.
T Consensus 80 ~g~~-~~~~G~~~--------~~~l~~~i~ 100 (101)
T cd02994 80 DGVF-RRYQGPRD--------KEDLISFIE 100 (101)
T ss_pred CCCE-EEecCCCC--------HHHHHHHHh
Confidence 9984 67777654 578887775
No 31
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.84 E-value=4e-20 Score=128.18 Aligned_cols=93 Identities=25% Similarity=0.439 Sum_probs=82.6
Q ss_pred ChhHHHHHHhCC--CcEEEEEecCCChhhHHHHHHHHHHhhh-cCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeE
Q 029057 89 GEGDFLAEVTGS--EKAICHFYHKEFYRCKIMDKHLKALAPK-HIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 89 ~~~~~~~~v~~~--~~vvV~Fy~~~c~~C~~~~~~l~~la~~-~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
+.++|.+.+..+ ..++|+||++||++|+.+.|.|.+++.+ ++++.|+++|+++++.++.+|++.++||+++|++|+.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 356788888877 6699999999999999999999999999 5579999999999999999999999999999999999
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHH
Q 029057 166 IDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 166 ~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
+.++.|... +.|.+.+
T Consensus 81 ~~~~~g~~~---------~~l~~~~ 96 (97)
T cd02984 81 VDRVSGADP---------KELAKKV 96 (97)
T ss_pred EEEEeCCCH---------HHHHHhh
Confidence 999999763 6666554
No 32
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.83 E-value=6.9e-20 Score=128.33 Aligned_cols=75 Identities=13% Similarity=0.267 Sum_probs=69.2
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC-CChhHHHhCCCCCccEEEEEeCCeEEEEEecccc
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE-NAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~-~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
+++.++|+||++||++|+.+.|.|+++++.++++.|+.||.+ ..+.++.+|+|.++||+++|++| .+.++.|..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~ 92 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT 92 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence 344599999999999999999999999999999999999998 78999999999999999999999 7888888765
No 33
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.1e-20 Score=143.29 Aligned_cols=90 Identities=23% Similarity=0.407 Sum_probs=84.6
Q ss_pred eEEc-ChhHHHHHHhCCC--cEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 85 YREI-GEGDFLAEVTGSE--KAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 85 v~~i-~~~~~~~~v~~~~--~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
|+.+ ++.+|...+..++ .|+|+|+++||+||+++.|.+..|+.+||+..|++||++++...+..+||...||+++|+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 5666 7889999998776 499999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecccc
Q 029057 162 KGIAIDRLVGFQD 174 (200)
Q Consensus 162 ~G~~~~~~~G~~~ 174 (200)
||..+.++.|...
T Consensus 83 ng~kid~~qGAd~ 95 (288)
T KOG0908|consen 83 NGVKIDQIQGADA 95 (288)
T ss_pred cCeEeeeecCCCH
Confidence 9999999999985
No 34
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.82 E-value=1.6e-19 Score=127.70 Aligned_cols=83 Identities=14% Similarity=0.233 Sum_probs=72.6
Q ss_pred hhHHHHHHhCC--CcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEE
Q 029057 90 EGDFLAEVTGS--EKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 90 ~~~~~~~v~~~--~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
.++|.+.+... ..|||+||++||++|+.|.|.+.+++++|++ +.|++||+++.+++++.|+|.+.||+++|++|+-+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 35677777643 4499999999999999999999999999999 99999999999999999999999999999999866
Q ss_pred EEEecc
Q 029057 167 DRLVGF 172 (200)
Q Consensus 167 ~~~~G~ 172 (200)
.-=.|-
T Consensus 82 ~~d~gt 87 (114)
T cd02986 82 KVDYGS 87 (114)
T ss_pred EEecCC
Confidence 543333
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.82 E-value=2.5e-19 Score=125.47 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=86.2
Q ss_pred eEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC--C-ceEEEEeCCC--ChhHHHhCCCCCccEEEE
Q 029057 85 YREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI--G-TKFIKLDAEN--APFFVTKLGIKTLPCVII 159 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~-v~f~~i~~~~--~~~l~~~~~i~~~Ptl~~ 159 (200)
+.+++..+|...+.++..++|+||++||++|+.+.|.+..+++.+. + +.|+.+|++. ++.++.+|+|.++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 5678888999999888889999999999999999999999998876 3 8899999998 899999999999999999
Q ss_pred EeCCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 160 LRKGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 160 ~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
|++|+.+.++.|... .+.|..||
T Consensus 82 ~~~g~~~~~~~g~~~--------~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERT--------AEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCC--------HHHHHhhC
Confidence 999998888888765 46665553
No 36
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.81 E-value=6.2e-19 Score=122.43 Aligned_cols=97 Identities=27% Similarity=0.536 Sum_probs=86.8
Q ss_pred cChhHHHHHHhCCC-cEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeE
Q 029057 88 IGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 88 i~~~~~~~~v~~~~-~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
++.++|...+..++ .++|+||++||++|+.+.|.+.++++.+++ +.|+++|++.++.++++|++.++|++++|++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 35678888887655 699999999999999999999999999875 9999999999999999999999999999999999
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 166 IDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 166 ~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+.++.|..+ .+.+..+|.+
T Consensus 81 ~~~~~g~~~--------~~~l~~~l~~ 99 (101)
T TIGR01068 81 VDRSVGALP--------KAALKQLINK 99 (101)
T ss_pred eeeecCCCC--------HHHHHHHHHh
Confidence 988888865 5788888875
No 37
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.81 E-value=3.2e-19 Score=126.19 Aligned_cols=98 Identities=16% Similarity=0.279 Sum_probs=83.1
Q ss_pred eEEcChhHHHHHHhCCCc-EEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCC--ChhHHHhCCCCCccEEEEE
Q 029057 85 YREIGEGDFLAEVTGSEK-AICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAEN--APFFVTKLGIKTLPCVIIL 160 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~--~~~l~~~~~i~~~Ptl~~~ 160 (200)
+.+++.++|...+.+++. ++|+||++||++|+.+.|.+.++++.+.+ +.|+.+|++. ++.++.+|+|.++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 568899999999877666 99999999999999999999999999876 8999999999 8899999999999999999
Q ss_pred eCCeE-----EEEEeccccCCCCCCCcHHHHHHHH
Q 029057 161 RKGIA-----IDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 161 ~~G~~-----~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
++|+. ...+.|... .+.|..|+
T Consensus 82 ~~~~~~~~~~~~~~~G~~~--------~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERS--------AKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccC--------HHHHHHHh
Confidence 88863 344444433 57777765
No 38
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=99.80 E-value=2.3e-19 Score=137.60 Aligned_cols=143 Identities=23% Similarity=0.371 Sum_probs=123.3
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEc-ChhHHHHHHhCCCc---EEEEEecCCChhhHHHHHHHHH
Q 029057 49 ELMDDPELEKLHADRIAALKKEAEKRQVLQMKGHGEYREI-GEGDFLAEVTGSEK---AICHFYHKEFYRCKIMDKHLKA 124 (200)
Q Consensus 49 ~l~dd~~le~~r~~R~~el~~~~~~~~~~~~~~~g~v~~i-~~~~~~~~v~~~~~---vvV~Fy~~~c~~C~~~~~~l~~ 124 (200)
+.+|+..|+.||++|+++|.+.++.- ..||.|.++ +.++|.+.|.+.-. ++||.|.+..+-|-++...+.-
T Consensus 109 ~~~de~~L~~yr~qrm~eMrq~l~~g-----p~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~c 183 (273)
T KOG3171|consen 109 EKEDENCLRKYRRQRMQEMRQKLSFG-----PRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTC 183 (273)
T ss_pred hhchHHHHHHHHHHHHHHHHHHhhcC-----CccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHH
Confidence 44467789999999999999888752 368889999 89999999987733 8999999999999999999999
Q ss_pred HhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHcCCccc
Q 029057 125 LAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGIASA 198 (200)
Q Consensus 125 la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~vi~~ 198 (200)
||..||.++|++|-.... ....+|...++||+++|++|+.+..++.....-+ ++|...+|+.+|+.+|+++.
T Consensus 184 LAAeyP~vKFckikss~~-gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlg-edffa~dle~FL~e~gllpe 255 (273)
T KOG3171|consen 184 LAAEYPIVKFCKIKSSNT-GASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLG-EDFFAGDLESFLNEYGLLPE 255 (273)
T ss_pred hhccCCceeEEEeeeccc-cchhhhcccCCceEEEeeCCchhHHHHHHHHHHh-hhhhhhhHHHHHHHcCCCcc
Confidence 999999999999986644 3578899999999999999999999987765333 47788999999999999863
No 39
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.80 E-value=1.2e-18 Score=138.19 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=88.1
Q ss_pred CceEEcChhHHHHHHhCC-----CcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccE
Q 029057 83 GEYREIGEGDFLAEVTGS-----EKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPC 156 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~~~-----~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Pt 156 (200)
..+.++++++|...+..+ ..++|.||+|||++|+.+.|.|+++++.+++ +.|+.+|++.++.++++|+|.++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 457889999999987643 4699999999999999999999999999987 8999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 157 VIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 157 l~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+++|++|+.+....|... .+.|..++..
T Consensus 110 l~~f~~G~~v~~~~G~~s--------~e~L~~fi~~ 137 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRS--------TEKLAAFALG 137 (224)
T ss_pred EEEEECCEEEEeeCCCCC--------HHHHHHHHHH
Confidence 999999998877667554 4666666543
No 40
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.79 E-value=1.5e-18 Score=121.39 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=82.9
Q ss_pred eEEcChhHHHHHHhCCCc-EEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeC
Q 029057 85 YREIGEGDFLAEVTGSEK-AICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRK 162 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~ 162 (200)
+.++++.+|.+.+.+.+. ++|.||++||++|+.+.|.|.++++++++ +.|+.+|++.++.++++|+|.++||+++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 567899999998876666 99999999999999999999999999875 9999999999999999999999999999998
Q ss_pred C-eEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 163 G-IAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 163 G-~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
| .....+.|.. +.+.|..|+
T Consensus 82 ~~~~~~~~~g~~--------~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGR--------TAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCC--------CHHHHHHHh
Confidence 8 3344444443 356776664
No 41
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.79 E-value=3.7e-18 Score=123.70 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=83.6
Q ss_pred ceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-----------hHHHhCC--
Q 029057 84 EYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-----------FFVTKLG-- 150 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-----------~l~~~~~-- 150 (200)
.+..++.++|.+.+.++..++|+||++|||+|+.+.|.|.+++++ .++.|+.||++..+ .+..+|+
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 466789999999999888899999999999999999999999998 45789999988543 4456665
Q ss_pred --CCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 151 --IKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 151 --i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
+.++||+++|++|+.+.+.+|... +.++|+.+|.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~-------~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSST-------TAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCC-------CHHHHHHHhh
Confidence 556999999999999999999643 3688888764
No 42
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.79 E-value=1.6e-18 Score=120.78 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=85.5
Q ss_pred cChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC---ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCe
Q 029057 88 IGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG---TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 88 i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~---v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
+++++|...+.++..++|+||++||+.|+.+.+.+..++..+.+ +.|+.+|++.++.++.+|+|.++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 46788888888767799999999999999999999999998874 999999999999999999999999999998887
Q ss_pred EEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 165 AIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 165 ~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
...++.|... .+.|..+|.++
T Consensus 81 ~~~~~~g~~~--------~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRD--------LEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCC--------HHHHHHHHHhc
Confidence 6667777544 67888888764
No 43
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.79 E-value=2.2e-18 Score=128.17 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=81.3
Q ss_pred hhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCC--hhHHHhCCCCCccEEEEE-eCCeE
Q 029057 90 EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENA--PFFVTKLGIKTLPCVIIL-RKGIA 165 (200)
Q Consensus 90 ~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~--~~l~~~~~i~~~Ptl~~~-~~G~~ 165 (200)
..+|..++..+..+||+||++||++|+.+.|.+.++++.|.+ +.|+.|+++.. ..++.+|+|.++||+++| ++|++
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 456777777777899999999999999999999999999975 78998888754 578999999999999999 68999
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 166 IDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 166 ~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
+.++.|... .+.|..+|.+.
T Consensus 90 v~~~~G~~~--------~~~l~~~l~~l 109 (142)
T cd02950 90 EGQSIGLQP--------KQVLAQNLDAL 109 (142)
T ss_pred EEEEeCCCC--------HHHHHHHHHHH
Confidence 999999875 46666666543
No 44
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.78 E-value=3.5e-18 Score=122.24 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=77.4
Q ss_pred HHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEE--EE
Q 029057 92 DFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAID--RL 169 (200)
Q Consensus 92 ~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~--~~ 169 (200)
+|.+.+.+...++|+||++||++|+.+.|.+++++..++.+.|+.+|+++.+.++.+|+|.++||+++|++|.... ++
T Consensus 14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 3556666666689999999999999999999999999877999999999999999999999999999999876554 66
Q ss_pred eccccCCCCCCCcHHHHHHHHH
Q 029057 170 VGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 170 ~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
.|..+ ...+..+|.
T Consensus 94 ~G~~~--------~~el~~~i~ 107 (113)
T cd02975 94 YGLPA--------GYEFASLIE 107 (113)
T ss_pred EecCc--------hHHHHHHHH
Confidence 77654 356666654
No 45
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.77 E-value=8.1e-18 Score=117.01 Aligned_cols=89 Identities=12% Similarity=0.237 Sum_probs=78.1
Q ss_pred HHHHhCCC-cEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEec
Q 029057 94 LAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171 (200)
Q Consensus 94 ~~~v~~~~-~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G 171 (200)
...+.+++ .++|.||++||+.|+.+.|.+.++++++.+ +.|+.+|+++.+.+..+++|.++||+++|++|+.+.++.|
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g 85 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG 85 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence 34444444 489999999999999999999999999875 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcHHHHHHHH
Q 029057 172 FQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 172 ~~~~g~~~~~~~e~Le~~L 190 (200)
..+ .+.+..+|
T Consensus 86 ~~~--------~~~~~~~l 96 (97)
T cd02949 86 VKM--------KSEYREFI 96 (97)
T ss_pred Ccc--------HHHHHHhh
Confidence 886 56676665
No 46
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.77 E-value=2.3e-18 Score=121.10 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=79.9
Q ss_pred hHHHHHHhCCCcEEEEEecCCChhhHHHHHHH---HHHhhhcC-CceEEEEeCCC----ChhHHHhCCCCCccEEEEEe-
Q 029057 91 GDFLAEVTGSEKAICHFYHKEFYRCKIMDKHL---KALAPKHI-GTKFIKLDAEN----APFFVTKLGIKTLPCVIILR- 161 (200)
Q Consensus 91 ~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l---~~la~~~~-~v~f~~i~~~~----~~~l~~~~~i~~~Ptl~~~~- 161 (200)
++|.+++.++..++|.||++||++|+.+.+.+ .++++.+. ++.|++||++. .+.++.+|++.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56778887888899999999999999999987 67888777 59999999987 57889999999999999997
Q ss_pred -CCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 162 -KGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 162 -~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
+|+.+.++.|+.+ .+.|..+|
T Consensus 82 ~~g~~~~~~~G~~~--------~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLT--------ADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccC--------HHHHHHHh
Confidence 8999999999886 57777765
No 47
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.77 E-value=5.1e-18 Score=119.47 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=78.0
Q ss_pred hHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC----CceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEE
Q 029057 91 GDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI----GTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 91 ~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~----~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
++|.. +.+.+.++|+||++||++|+.+.|.|.++++.+. ++.++.+|++..+.++++|+|.++||+++|++|. .
T Consensus 7 ~~~~~-~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~ 84 (104)
T cd03000 7 DSFKD-VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-A 84 (104)
T ss_pred hhhhh-hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-c
Confidence 56665 4556679999999999999999999999999873 3889999999999999999999999999998774 4
Q ss_pred EEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 167 DRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 167 ~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
.++.|..+ .+.|..++.+.
T Consensus 85 ~~~~G~~~--------~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRT--------KDDIVEFANRV 103 (104)
T ss_pred eeecCCCC--------HHHHHHHHHhh
Confidence 55666543 68888888763
No 48
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.76 E-value=7.1e-18 Score=117.94 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=76.4
Q ss_pred eEEcChhHHHHHHhCC-CcEEEEEecCCChhhHHHHHHHHHHhhhcCC---ceEEEEeCCCChhHHHhCCCCCccEEEEE
Q 029057 85 YREIGEGDFLAEVTGS-EKAICHFYHKEFYRCKIMDKHLKALAPKHIG---TKFIKLDAENAPFFVTKLGIKTLPCVIIL 160 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~-~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~---v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~ 160 (200)
+.++++++|.+.+.++ ..++|+||++||++|+.+.|.+.++++.+.+ +.|+++|++.+ .++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 6688999999988766 4599999999999999999999999998865 89999999987 47888999999999999
Q ss_pred eCCe--EEEEEecccc
Q 029057 161 RKGI--AIDRLVGFQD 174 (200)
Q Consensus 161 ~~G~--~~~~~~G~~~ 174 (200)
++|+ ...++.|..+
T Consensus 81 ~~~~~~~~~~~~g~~~ 96 (104)
T cd02995 81 PAGDKSNPIKYEGDRT 96 (104)
T ss_pred cCCCcCCceEccCCcC
Confidence 8887 4556666543
No 49
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.76 E-value=6.3e-18 Score=116.73 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=82.4
Q ss_pred EcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhc---CCceEEEEeCCCChhHHHhCCCCCccEEEEEeCC
Q 029057 87 EIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKH---IGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG 163 (200)
Q Consensus 87 ~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~---~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G 163 (200)
+++.++|...+.++..++|+||++||++|+.+.|.+.++++.+ ..+.|+.+|++.++.++++|+|.++||+++|++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 5678899999988889999999999999999999999999988 3599999999999999999999999999999777
Q ss_pred -eEEEEEeccccCCCCCCCcHHHHHHH
Q 029057 164 -IAIDRLVGFQDLGGKDDFTTKTLEVL 189 (200)
Q Consensus 164 -~~~~~~~G~~~~g~~~~~~~e~Le~~ 189 (200)
....++.|... .+.+.+|
T Consensus 82 ~~~~~~~~g~~~--------~~~i~~~ 100 (101)
T cd02961 82 SKEPVKYEGPRT--------LESLVEF 100 (101)
T ss_pred CcccccCCCCcC--------HHHHHhh
Confidence 66666666543 4566554
No 50
>PTZ00062 glutaredoxin; Provisional
Probab=99.76 E-value=1.1e-17 Score=130.81 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=71.9
Q ss_pred ChhHHHHHHhCC-CcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEE
Q 029057 89 GEGDFLAEVTGS-EKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 89 ~~~~~~~~v~~~-~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
+.++|...+..+ +.+|++|||+||++|+.|.|.+.+++++||+++|++||++ |+|.++||+++|++|+.+.
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence 677888887754 6689999999999999999999999999999999999987 9999999999999999999
Q ss_pred EEecccc
Q 029057 168 RLVGFQD 174 (200)
Q Consensus 168 ~~~G~~~ 174 (200)
+++|...
T Consensus 77 r~~G~~~ 83 (204)
T PTZ00062 77 SLEGCNT 83 (204)
T ss_pred eeeCCCH
Confidence 9999874
No 51
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.75 E-value=8.2e-18 Score=117.75 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=81.6
Q ss_pred eEEcChhHHHHHHhCCC-cEEEEEecCCChhhHHHHHHHHHHhhhcC---CceEEEEeCCC-ChhHHHhCCCCCccEEEE
Q 029057 85 YREIGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHI---GTKFIKLDAEN-APFFVTKLGIKTLPCVII 159 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~-~vvV~Fy~~~c~~C~~~~~~l~~la~~~~---~v~f~~i~~~~-~~~l~~~~~i~~~Ptl~~ 159 (200)
+.++++++|...+..++ .++|+||++||++|+.+.|.+..+++.+. .+.|+++|++. ++.++.+|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 56788899998887666 59999999999999999999999999886 38999999999 999999999999999999
Q ss_pred EeCC-eEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 160 LRKG-IAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 160 ~~~G-~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
|++| +....+.|.. +.+.|.+|+
T Consensus 82 ~~~~~~~~~~~~g~~--------~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGR--------DLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCcc--------CHHHHHhhC
Confidence 9776 4444454543 356776653
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.74 E-value=7.3e-17 Score=109.31 Aligned_cols=91 Identities=24% Similarity=0.509 Sum_probs=81.5
Q ss_pred HHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEec
Q 029057 92 DFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG 171 (200)
Q Consensus 92 ~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G 171 (200)
+|...+.....++|.||++||+.|+.+.+.+.+++..++++.|+.+|++..+.++..|++.++|++++|++|+.+..+.|
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 81 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVG 81 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEec
Confidence 56667777777999999999999999999999999887789999999999999999999999999999999999999988
Q ss_pred cccCCCCCCCcHHHHHHHH
Q 029057 172 FQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 172 ~~~~g~~~~~~~e~Le~~L 190 (200)
... .+.|..+|
T Consensus 82 ~~~--------~~~l~~~i 92 (93)
T cd02947 82 ADP--------KEELEEFL 92 (93)
T ss_pred CCC--------HHHHHHHh
Confidence 765 46777665
No 53
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.73 E-value=5.5e-17 Score=116.24 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=75.9
Q ss_pred ceEEcChhHHHHHHhCCC-cEEEEEecCCChhhHHHHHHHHHHhhhcC---C-ceEEEEeCC--CChhHHHhCCCCCccE
Q 029057 84 EYREIGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHI---G-TKFIKLDAE--NAPFFVTKLGIKTLPC 156 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~-~vvV~Fy~~~c~~C~~~~~~l~~la~~~~---~-v~f~~i~~~--~~~~l~~~~~i~~~Pt 156 (200)
.+.++++++|...+..+. .++|.||++||++|+.+.|.|.+++..+. + +.|+.+|++ .++.++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 478889999999987765 59999999999999999999999999764 3 889999975 4678999999999999
Q ss_pred EEEEeCCeEEEEEecccc
Q 029057 157 VIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 157 l~~~~~G~~~~~~~G~~~ 174 (200)
+++|++|. .....|..-
T Consensus 82 ~~lf~~~~-~~~~~~~~~ 98 (114)
T cd02992 82 LRYFPPFS-KEATDGLKQ 98 (114)
T ss_pred EEEECCCC-ccCCCCCcc
Confidence 99999887 444444443
No 54
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.72 E-value=7.1e-17 Score=114.66 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=73.1
Q ss_pred ceEEcChhHHHHHHh---CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCC-ChhHHH-hCCCCCccE
Q 029057 84 EYREIGEGDFLAEVT---GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAEN-APFFVT-KLGIKTLPC 156 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~---~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~-~~~l~~-~~~i~~~Pt 156 (200)
.|.+++.++|...+. ....++|.||++||++|+.+.|.|.+++..+.+ +.|+.||++. ...++. .|++.++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 467889999988874 345699999999999999999999999999874 8999999997 566776 599999999
Q ss_pred EEEEeCC-eEEEEEec
Q 029057 157 VIILRKG-IAIDRLVG 171 (200)
Q Consensus 157 l~~~~~G-~~~~~~~G 171 (200)
+++|++| .....+.|
T Consensus 82 i~~f~~~~~~~~~y~g 97 (109)
T cd02993 82 ILFFPKNSRQPIKYPS 97 (109)
T ss_pred EEEEcCCCCCceeccC
Confidence 9999665 44555555
No 55
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.2e-17 Score=140.81 Aligned_cols=104 Identities=19% Similarity=0.313 Sum_probs=91.9
Q ss_pred CCceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC----CceEEEEeCCCChhHHHhCCCCCccEE
Q 029057 82 HGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI----GTKFIKLDAENAPFFVTKLGIKTLPCV 157 (200)
Q Consensus 82 ~g~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~----~v~f~~i~~~~~~~l~~~~~i~~~Ptl 157 (200)
-..+..++.++|...+..++.++|.||||||++|+++.|.+.+.|.... .+++++||++.+..+|.+|+|+++||+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTl 103 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTL 103 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeE
Confidence 3468889999999999999999999999999999999999999988765 399999999999999999999999999
Q ss_pred EEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 158 IILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 158 ~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
.+|+||.....+.|... .+.+-.||.+.
T Consensus 104 kiFrnG~~~~~Y~G~r~--------adgIv~wl~kq 131 (493)
T KOG0190|consen 104 KIFRNGRSAQDYNGPRE--------ADGIVKWLKKQ 131 (493)
T ss_pred EEEecCCcceeccCccc--------HHHHHHHHHhc
Confidence 99999998677778876 46666666644
No 56
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.69 E-value=4.2e-16 Score=113.16 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=75.1
Q ss_pred hHHHHHHhCC-CcEEEEEecCCChhhHHHHHHHH---HHhhhcC-CceEEEEeCCCC-------------hhHHHhCCCC
Q 029057 91 GDFLAEVTGS-EKAICHFYHKEFYRCKIMDKHLK---ALAPKHI-GTKFIKLDAENA-------------PFFVTKLGIK 152 (200)
Q Consensus 91 ~~~~~~v~~~-~~vvV~Fy~~~c~~C~~~~~~l~---~la~~~~-~v~f~~i~~~~~-------------~~l~~~~~i~ 152 (200)
+++..+..++ .+++|+||++||++|+.+.|.+. .+...+. ++.++.||++.. ..++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4566677777 78999999999999999999874 5555554 478999998864 6789999999
Q ss_pred CccEEEEEe-C-CeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 153 TLPCVIILR-K-GIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 153 ~~Ptl~~~~-~-G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
++||+++|. + |+++.++.|... .+.+..+|..
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~--------~~~~~~~l~~ 117 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLP--------PDEFLAYLEY 117 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCC--------HHHHHHHHHH
Confidence 999999995 4 699999999875 4566665543
No 57
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.67 E-value=6.6e-16 Score=110.22 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=78.6
Q ss_pred eEEcChhHHHHHHhCCCcEEEEEec--CCCh---hhHHHHHHHHHHhhhcCCceEEEEeC-----CCChhHHHhCCCC--
Q 029057 85 YREIGEGDFLAEVTGSEKAICHFYH--KEFY---RCKIMDKHLKALAPKHIGTKFIKLDA-----ENAPFFVTKLGIK-- 152 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~vvV~Fy~--~~c~---~C~~~~~~l~~la~~~~~v~f~~i~~-----~~~~~l~~~~~i~-- 152 (200)
+..++..+|.+.|.+...++|.||+ |||+ .|+.+.|.+...+.. +.+++||+ .++.+||++|+|.
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCCCcC
Confidence 5678999999999988889999999 8888 777777666555543 89999999 4578899999999
Q ss_pred CccEEEEEeCCe--EEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 153 TLPCVIILRKGI--AIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 153 ~~Ptl~~~~~G~--~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
++||+++|++|. ....+.|. +.+.+.|-.|+.++
T Consensus 80 gyPTl~lF~~g~~~~~~~Y~G~-------~r~~~~lv~~v~~~ 115 (116)
T cd03007 80 SYPVIYLFHGGDFENPVPYSGA-------DVTVDALQRFLKGN 115 (116)
T ss_pred CCCEEEEEeCCCcCCCccCCCC-------cccHHHHHHHHHhc
Confidence 999999999985 33344453 12368888888775
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.67 E-value=7.2e-16 Score=134.13 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=87.3
Q ss_pred ceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC----CceEEEEeCCCChhHHHhCCCCCccEEEE
Q 029057 84 EYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI----GTKFIKLDAENAPFFVTKLGIKTLPCVII 159 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~----~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~ 159 (200)
.+..++.++|...+.+++.++|+||++||++|+.+.|.+.+++..+. ++.|++|||+.++.+|++|+|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 36788999999999888889999999999999999999999887653 38999999999999999999999999999
Q ss_pred EeCCeE-EEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 160 LRKGIA-IDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 160 ~~~G~~-~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
|++|+. +.++.|..+ .+.|..|+.+
T Consensus 82 ~~~g~~~~~~~~g~~~--------~~~l~~~i~~ 107 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRD--------ADGIVKYMKK 107 (462)
T ss_pred EeCCccceeEecCCCC--------HHHHHHHHHH
Confidence 999987 777888654 4556666554
No 59
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.66 E-value=5.3e-16 Score=111.50 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=70.0
Q ss_pred ChhHHHHHHhC--CCcEEEEEec-------CCChhhHHHHHHHHHHhhhcC-CceEEEEeCCC-------ChhHHHhCCC
Q 029057 89 GEGDFLAEVTG--SEKAICHFYH-------KEFYRCKIMDKHLKALAPKHI-GTKFIKLDAEN-------APFFVTKLGI 151 (200)
Q Consensus 89 ~~~~~~~~v~~--~~~vvV~Fy~-------~~c~~C~~~~~~l~~la~~~~-~v~f~~i~~~~-------~~~l~~~~~i 151 (200)
+.++|.+.+.. +++++|+||| +||++|+.+.|.+++++.+++ +++|++||+++ +..+...++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 56788888875 4569999999 999999999999999999999 59999999976 3578899999
Q ss_pred C-CccEEEEEeCCeEEEEEeccc
Q 029057 152 K-TLPCVIILRKGIAIDRLVGFQ 173 (200)
Q Consensus 152 ~-~~Ptl~~~~~G~~~~~~~G~~ 173 (200)
. ++||+++|++|+ +++|..
T Consensus 88 ~~~iPT~~~~~~~~---~l~~~~ 107 (119)
T cd02952 88 TTGVPTLLRWKTPQ---RLVEDE 107 (119)
T ss_pred ccCCCEEEEEcCCc---eecchh
Confidence 8 999999998774 344444
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.66 E-value=1.3e-15 Score=133.44 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=89.0
Q ss_pred CceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhc----CCceEEEEeCCCChhHHHhCCCCCccEEE
Q 029057 83 GEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKH----IGTKFIKLDAENAPFFVTKLGIKTLPCVI 158 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~----~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~ 158 (200)
..+..++.++|...+.+++.++|.||++||++|+.+.|.+.+++..+ +++.|++||++.++.+|.+|+|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 35778899999999988888999999999999999999999988665 34999999999999999999999999999
Q ss_pred EEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 159 ILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 159 ~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
+|++|+.+ ++.|... .+.|..|+.+.
T Consensus 112 ~~~~g~~~-~y~g~~~--------~~~l~~~l~~~ 137 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRT--------ADGIVSWIKKL 137 (477)
T ss_pred EEECCceE-EecCCCC--------HHHHHHHHHHh
Confidence 99999876 7777654 57788777765
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.63 E-value=1.8e-15 Score=132.57 Aligned_cols=106 Identities=13% Similarity=0.195 Sum_probs=90.7
Q ss_pred CCceEEcChhHHHHHHhCCC-cEEEEEecCCChhhHHHHHHHHHHhhhcCC---ceEEEEeCCCChhHHHhCCCCCccEE
Q 029057 82 HGEYREIGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHIG---TKFIKLDAENAPFFVTKLGIKTLPCV 157 (200)
Q Consensus 82 ~g~v~~i~~~~~~~~v~~~~-~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~---v~f~~i~~~~~~~l~~~~~i~~~Ptl 157 (200)
.+.+..+++++|...+.+++ .|+|.||++||++|+.+.|.|.+++..+.+ +.|+++|++.+...+..|+++++||+
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTI 435 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeE
Confidence 45688889999999875554 599999999999999999999999988864 88999999999989999999999999
Q ss_pred EEEeCCeEE-EEEeccccCCCCCCCcHHHHHHHHHHcCC
Q 029057 158 IILRKGIAI-DRLVGFQDLGGKDDFTTKTLEVLLVKKGI 195 (200)
Q Consensus 158 ~~~~~G~~~-~~~~G~~~~g~~~~~~~e~Le~~L~~~~v 195 (200)
++|++|..+ .++.|..+ .+.+..+|.++..
T Consensus 436 ~~~~~~~~~~~~~~G~~~--------~~~l~~~i~~~~~ 466 (477)
T PTZ00102 436 LFVKAGERTPIPYEGERT--------VEGFKEFVNKHAT 466 (477)
T ss_pred EEEECCCcceeEecCcCC--------HHHHHHHHHHcCC
Confidence 999877654 46777664 6889999988764
No 62
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.63 E-value=3.6e-15 Score=129.24 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=81.3
Q ss_pred CceEEcChhHHHHHHh---CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCCCh-hH-HHhCCCCCcc
Q 029057 83 GEYREIGEGDFLAEVT---GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAENAP-FF-VTKLGIKTLP 155 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~---~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~~~-~l-~~~~~i~~~P 155 (200)
..+.+++.++|...+. ....+||+||+|||++|+.|.|.|++++++|.+ ++|++||++.+. .+ +.+|+|.++|
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 3688899999999885 445599999999999999999999999999874 899999999764 34 4789999999
Q ss_pred EEEEEeCCeE-EEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 156 CVIILRKGIA-IDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 156 tl~~~~~G~~-~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
|+++|++|.. ...+.|- .-+.+.|..|+..
T Consensus 431 Tii~Fk~g~~~~~~Y~~g-------~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSE-------KRDVDSLMSFVNL 461 (463)
T ss_pred eEEEEECCCCCceeCCCC-------CCCHHHHHHHHHh
Confidence 9999999852 2223221 1236778777764
No 63
>PLN02309 5'-adenylylsulfate reductase
Probab=99.61 E-value=1e-14 Score=126.37 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=82.8
Q ss_pred CceEEcChhHHHHHHh---CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCC-CChhHHH-hCCCCCcc
Q 029057 83 GEYREIGEGDFLAEVT---GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAE-NAPFFVT-KLGIKTLP 155 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~---~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~-~~~~l~~-~~~i~~~P 155 (200)
+.+.+++.++|...+. ....+||.||+|||++|+.|.|.|.+++++|.+ ++|++||++ ....++. +|+|.++|
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 4688899999998874 445599999999999999999999999999864 999999999 7777886 69999999
Q ss_pred EEEEEeCCeEE-EEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 156 CVIILRKGIAI-DRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 156 tl~~~~~G~~~-~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
|+++|++|... ..+.|. .-+.+.|..|+...
T Consensus 425 Til~f~~g~~~~v~Y~~~-------~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSE-------KRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCC-------CcCHHHHHHHHHHh
Confidence 99999887532 223221 11257788887653
No 64
>PHA02125 thioredoxin-like protein
Probab=99.59 E-value=1.6e-14 Score=95.84 Aligned_cols=63 Identities=21% Similarity=0.416 Sum_probs=56.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEecccc
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
|+.||++||++|+.+.|.|.+++ ..|+.||.+.++.++.+|+|.++||++ +|+.+.++.|+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~ 64 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPR 64 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCC
Confidence 78999999999999999998763 578999999999999999999999987 7888899999854
No 65
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.59 E-value=6.4e-15 Score=105.97 Aligned_cols=92 Identities=9% Similarity=0.092 Sum_probs=70.4
Q ss_pred hHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC-CceEEEEeCCCCh-hHHHhCCCCC--ccEEEEE-eCCeE
Q 029057 91 GDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI-GTKFIKLDAENAP-FFVTKLGIKT--LPCVIIL-RKGIA 165 (200)
Q Consensus 91 ~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~-~v~f~~i~~~~~~-~l~~~~~i~~--~Ptl~~~-~~G~~ 165 (200)
+.+..+..++.+|+|.||++||++|+.+.|.+.+.+..+. +..|+.|+++..+ .....|++.+ +||+++| ++|++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 3444455566679999999999999999999988766543 3678888887664 3467899986 9999999 69999
Q ss_pred EEEEeccccCCCCCCCc
Q 029057 166 IDRLVGFQDLGGKDDFT 182 (200)
Q Consensus 166 ~~~~~G~~~~g~~~~~~ 182 (200)
+.++++..+..+...|.
T Consensus 90 ~~~~~~~~~~~~~~~f~ 106 (117)
T cd02959 90 HPEIINKKGNPNYKYFY 106 (117)
T ss_pred chhhccCCCCccccccC
Confidence 99877777655544443
No 66
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.2e-15 Score=129.23 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=85.9
Q ss_pred CceEEcChhHHHHHHhCCCc-EEEEEecCCChhhHHHHHHHHHHhhhcCC---ceEEEEeCCCChhHHHhCCCCCccEEE
Q 029057 83 GEYREIGEGDFLAEVTGSEK-AICHFYHKEFYRCKIMDKHLKALAPKHIG---TKFIKLDAENAPFFVTKLGIKTLPCVI 158 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~~~~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~~---v~f~~i~~~~~~~l~~~~~i~~~Ptl~ 158 (200)
+.|..+.+++|.+.+..++. |+|.||||||++|+.+.|+|++||++|.+ +.++++|++.+. .....+.++|||+
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEE
Confidence 66888999999999887766 99999999999999999999999999975 999999999885 5566888899999
Q ss_pred EEeCCeE--EEEEeccccCCCCCCCcHHHHHHHHHHcCC
Q 029057 159 ILRKGIA--IDRLVGFQDLGGKDDFTTKTLEVLLVKKGI 195 (200)
Q Consensus 159 ~~~~G~~--~~~~~G~~~~g~~~~~~~e~Le~~L~~~~v 195 (200)
+|+.|.. .-.+-|-.. .+.|..++..+|-
T Consensus 444 ~~pag~k~~pv~y~g~R~--------le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRT--------LEDLKKFIKKSAT 474 (493)
T ss_pred EecCCCCCCCcccCCCcc--------hHHHHhhhccCCC
Confidence 9987763 233345444 5888888888875
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.58 E-value=2.3e-14 Score=96.07 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=66.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCc
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFT 182 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~ 182 (200)
|..||++||++|+.+.|.+.+++..++. +.++.||+++.+.++++|++.++||+++ +|+ .++.|..+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~-------- 70 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPT-------- 70 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCC--------
Confidence 5689999999999999999999998864 8999999999999999999999999886 886 36778754
Q ss_pred HHHHHHHHHH
Q 029057 183 TKTLEVLLVK 192 (200)
Q Consensus 183 ~e~Le~~L~~ 192 (200)
.+.+..+|..
T Consensus 71 ~~~l~~~l~~ 80 (82)
T TIGR00411 71 KEELVEAIKK 80 (82)
T ss_pred HHHHHHHHHh
Confidence 5777777764
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.58 E-value=1.4e-14 Score=101.31 Aligned_cols=85 Identities=22% Similarity=0.336 Sum_probs=72.9
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCC--CccEEEEEeC--CeEEEEEecccc
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIK--TLPCVIILRK--GIAIDRLVGFQD 174 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~--~~Ptl~~~~~--G~~~~~~~G~~~ 174 (200)
..++++.||++||++|..+.|.+.++|++|.+ +.|+.||+++.+.++..|++. ++|+++++++ |+......|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~-- 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE-- 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc--
Confidence 45699999999999999999999999999987 999999999999999999999 9999999988 6543322222
Q ss_pred CCCCCCCcHHHHHHHHHH
Q 029057 175 LGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 175 ~g~~~~~~~e~Le~~L~~ 192 (200)
++.+.|.+|+..
T Consensus 90 ------~~~~~l~~fi~~ 101 (103)
T cd02982 90 ------LTAESLEEFVED 101 (103)
T ss_pred ------cCHHHHHHHHHh
Confidence 357899999875
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.57 E-value=2.6e-14 Score=113.22 Aligned_cols=82 Identities=23% Similarity=0.322 Sum_probs=67.8
Q ss_pred HHHHHHhCCCcEEEEEec---CCChhhHHHHHHHHHHhhhcCCc--eEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEE
Q 029057 92 DFLAEVTGSEKAICHFYH---KEFYRCKIMDKHLKALAPKHIGT--KFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 92 ~~~~~v~~~~~vvV~Fy~---~~c~~C~~~~~~l~~la~~~~~v--~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
.|.+.+ +++..++.|++ +||++|+.+.|.+++++..|+++ .++.+|.++.+.++.+|+|.++||+++|++|+.+
T Consensus 12 ~~~~~~-~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 12 LFLKEL-KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred HHHHhc-CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeee
Confidence 334444 34445666888 99999999999999999999874 4666777799999999999999999999999997
Q ss_pred E-EEecccc
Q 029057 167 D-RLVGFQD 174 (200)
Q Consensus 167 ~-~~~G~~~ 174 (200)
. ++.|..+
T Consensus 91 ~~~~~G~~~ 99 (215)
T TIGR02187 91 GIRYTGIPA 99 (215)
T ss_pred EEEEeecCC
Confidence 4 8999865
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.53 E-value=1.4e-13 Score=109.11 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=70.3
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCc
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFT 182 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~ 182 (200)
+|+.||++||++|+.+.+.++.++..++++.|..+|.+..+.++.+|+|.++||++++++|+. +.|...
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~-------- 204 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYP-------- 204 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCC--------
Confidence 566699999999999999999999998889999999999999999999999999999988863 778765
Q ss_pred HHHHHHHHHH
Q 029057 183 TKTLEVLLVK 192 (200)
Q Consensus 183 ~e~Le~~L~~ 192 (200)
.+.|..+|.+
T Consensus 205 ~~~l~~~l~~ 214 (215)
T TIGR02187 205 EEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHh
Confidence 5788887765
No 71
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.52 E-value=8e-14 Score=121.31 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=84.9
Q ss_pred CCceEEcChhHHHHHHhCCC-cEEEEEecCCChhhHHHHHHHHHHhhhcCC----ceEEEEeCCCChhHHHhCCCCCccE
Q 029057 82 HGEYREIGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHIG----TKFIKLDAENAPFFVTKLGIKTLPC 156 (200)
Q Consensus 82 ~g~v~~i~~~~~~~~v~~~~-~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~----v~f~~i~~~~~~~l~~~~~i~~~Pt 156 (200)
.+.+..+++.+|...+..++ .++|.||++||++|+.+.|.+.+++..+.+ +.|+++|++.+.. .. +++.++||
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~~~Pt 422 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVEGFPT 422 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCccccCE
Confidence 45678889999999886544 499999999999999999999999998874 7899999988753 33 99999999
Q ss_pred EEEEeCCeEE--EEEeccccCCCCCCCcHHHHHHHHHHcC
Q 029057 157 VIILRKGIAI--DRLVGFQDLGGKDDFTTKTLEVLLVKKG 194 (200)
Q Consensus 157 l~~~~~G~~~--~~~~G~~~~g~~~~~~~e~Le~~L~~~~ 194 (200)
+++|++|... ..+.|... .+.|..+|.+++
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~--------~~~l~~~l~~~~ 454 (462)
T TIGR01130 423 IKFVPAGKKSEPVPYDGDRT--------LEDFSKFIAKHA 454 (462)
T ss_pred EEEEeCCCCcCceEecCcCC--------HHHHHHHHHhcC
Confidence 9999888653 45556443 688899988775
No 72
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.51 E-value=1.6e-13 Score=91.18 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=59.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCc
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFT 182 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~ 182 (200)
.|.||++||++|+.+.|.+++++++++. +.|++|| .+..+.+|++.++||+++ ||+.+ +.|....
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~------- 67 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPS------- 67 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCC-------
Confidence 3789999999999999999999999975 7888887 344578899999999999 99877 6776331
Q ss_pred HHHHHHHH
Q 029057 183 TKTLEVLL 190 (200)
Q Consensus 183 ~e~Le~~L 190 (200)
.+.|.++|
T Consensus 68 ~~~l~~~l 75 (76)
T TIGR00412 68 KEEIKEIL 75 (76)
T ss_pred HHHHHHHh
Confidence 36776665
No 73
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.49 E-value=4.1e-13 Score=97.34 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=68.8
Q ss_pred ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHH-H--HHHhhhc-CCceEEEEeCCCChhHHH--------hCCCCCccE
Q 029057 89 GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKH-L--KALAPKH-IGTKFIKLDAENAPFFVT--------KLGIKTLPC 156 (200)
Q Consensus 89 ~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~-l--~~la~~~-~~v~f~~i~~~~~~~l~~--------~~~i~~~Pt 156 (200)
+++.+..+..++++|+|+||++||++|+.|.+. + .+++... .+..++++|.++.+.+.+ .|++.++|+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 456677777778889999999999999999873 3 3455543 458899999999887765 358999999
Q ss_pred EEEE-eCCeEEEEEecccc
Q 029057 157 VIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 157 l~~~-~~G~~~~~~~G~~~ 174 (200)
++++ .+|+++.+..++..
T Consensus 84 ~vfl~~~G~~~~~~~~~~~ 102 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPP 102 (124)
T ss_pred EEEECCCCCEEeeeeecCC
Confidence 9999 88999998877744
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.48 E-value=5.4e-13 Score=100.20 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=65.1
Q ss_pred HHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC------------hhHH-HhC---CCCCccEEEE
Q 029057 96 EVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA------------PFFV-TKL---GIKTLPCVII 159 (200)
Q Consensus 96 ~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~------------~~l~-~~~---~i~~~Ptl~~ 159 (200)
.+..++..+|+||++||++|+...|.+.+++++| ++.++.|+.+.. +... ..| ++.++||.++
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 3444555899999999999999999999999998 466666666542 2232 345 7899999999
Q ss_pred E-eCCeE-EEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 160 L-RKGIA-IDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 160 ~-~~G~~-~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+ ++|.. +....|..+ .+.++..+.+
T Consensus 125 ID~~G~~i~~~~~G~~s--------~~~l~~~I~~ 151 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVD--------EAELANRMDE 151 (153)
T ss_pred EeCCCCEEEEEeecccC--------HHHHHHHHHH
Confidence 9 66664 557788775 5667766654
No 75
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.48 E-value=2.9e-13 Score=87.47 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=55.1
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
|+.||++||++|+.+.+.+++++..++++.|..+|+++.+.+..+|++.++||+++ +|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence 57899999999999999999999988889999999999999999999999999765 6754
No 76
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=111.83 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=71.4
Q ss_pred hCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC----ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccc
Q 029057 98 TGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG----TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQ 173 (200)
Q Consensus 98 ~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~----v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~ 173 (200)
...+.++|.||||||++|+.+.|+|.++.-..++ +++.++|++..|.++.+|+|+++||+.+|++|-.+. +.|..
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d-YRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID-YRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee-cCCCc
Confidence 3444599999999999999999999999877764 899999999999999999999999999999997554 45555
Q ss_pred cCCCCCCCcHHHHHHHHHHc
Q 029057 174 DLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 174 ~~g~~~~~~~e~Le~~L~~~ 193 (200)
. .+.+-++-.+.
T Consensus 120 ~--------Kd~iieFAhR~ 131 (468)
T KOG4277|consen 120 E--------KDAIIEFAHRC 131 (468)
T ss_pred c--------HHHHHHHHHhc
Confidence 4 35555555443
No 77
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.45 E-value=7e-13 Score=118.75 Aligned_cols=101 Identities=15% Similarity=0.291 Sum_probs=81.9
Q ss_pred eEEc-ChhHHHHHHhC----CCcEEEEEecCCChhhHHHHHHH---HHHhhhcCCceEEEEeCCCC----hhHHHhCCCC
Q 029057 85 YREI-GEGDFLAEVTG----SEKAICHFYHKEFYRCKIMDKHL---KALAPKHIGTKFIKLDAENA----PFFVTKLGIK 152 (200)
Q Consensus 85 v~~i-~~~~~~~~v~~----~~~vvV~Fy~~~c~~C~~~~~~l---~~la~~~~~v~f~~i~~~~~----~~l~~~~~i~ 152 (200)
...+ +.+++.+.+.. +++|+|+||++||++|+.+.+.. .++.+.+.++.++++|++++ ..+.++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 4556 67777776643 45699999999999999998875 67778888899999999864 5788999999
Q ss_pred CccEEEEE-eCCeE--EEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 153 TLPCVIIL-RKGIA--IDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 153 ~~Ptl~~~-~~G~~--~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
++||+++| ++|++ +.+++|..+ .+.+.++|.+.
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~~--------~~~f~~~L~~~ 569 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFMD--------AAAFAAHLRQL 569 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCCC--------HHHHHHHHHHh
Confidence 99999999 58988 467888765 67888888763
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.44 E-value=1.1e-12 Score=115.21 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=70.8
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeC----------------------------CCChhHHHh
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDA----------------------------ENAPFFVTK 148 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~----------------------------~~~~~l~~~ 148 (200)
++++|||+|||+||++|+.+.|.|.+++++++ ++.|+.|.. +....+.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 45569999999999999999999999999886 477766542 334567889
Q ss_pred CCCCCccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 149 LGIKTLPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 149 ~~i~~~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
|+|.++||++++ ++|+++.++.|..+ .+.|..+|+
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~--------~eeL~a~Ie 170 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSIS--------EAQALALIR 170 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCC--------HHHHHHHHH
Confidence 999999999776 89999999999876 577887777
No 79
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.43 E-value=1.1e-12 Score=95.18 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=64.3
Q ss_pred HHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeC-----------------------CCChhHHHhC
Q 029057 93 FLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDA-----------------------ENAPFFVTKL 149 (200)
Q Consensus 93 ~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~-----------------------~~~~~l~~~~ 149 (200)
+.....++..+||+||++||++|+.+.|.+.++++++ ++.|+.|+. +....++..|
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDL 96 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhc
Confidence 4333334566999999999999999999999999887 477776663 3344577889
Q ss_pred CCCCccEEEEE-eCCeEEEEEecccc
Q 029057 150 GIKTLPCVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 150 ~i~~~Ptl~~~-~~G~~~~~~~G~~~ 174 (200)
++.++|+.+++ ++|+++.++.|..+
T Consensus 97 ~v~~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 97 GVYGVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred CCCCCCeEEEECCCceEEEEEeccCC
Confidence 99999966666 89999999999876
No 80
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.43 E-value=6.9e-13 Score=94.09 Aligned_cols=84 Identities=18% Similarity=0.333 Sum_probs=62.2
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHH---HhhhcC-CceEEEEeCCCC--------------------hhHHHhCCCCCc
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKA---LAPKHI-GTKFIKLDAENA--------------------PFFVTKLGIKTL 154 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~---la~~~~-~v~f~~i~~~~~--------------------~~l~~~~~i~~~ 154 (200)
+++++|+.||++||+.|+.+.+.+.. +...+. ++.++.++++.. ..+...|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 34558999999999999999998875 444443 377888887643 348889999999
Q ss_pred cEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 155 PCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 155 Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
||++++ ++|+.+.++.|+.+ .++|..+|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~--------~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLS--------PEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS----------HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCC--------HHHHHhhC
Confidence 999999 68999999999987 57777765
No 81
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.42 E-value=3.6e-12 Score=98.72 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=60.5
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-----------------------hHHHhCCCCCcc
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-----------------------FFVTKLGIKTLP 155 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-----------------------~l~~~~~i~~~P 155 (200)
+++.+||+||++||++|+...|.+.+++++ ++.++.|+.++.+ .+...|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 456699999999999999999999999764 6788888765432 234578999999
Q ss_pred EEEEE-eCCeEEEEEecccc
Q 029057 156 CVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 156 tl~~~-~~G~~~~~~~G~~~ 174 (200)
+.+++ ++|+++.++.|..+
T Consensus 145 ~t~vid~~G~i~~~~~G~~~ 164 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLN 164 (185)
T ss_pred eEEEECCCceEEEEEecCCC
Confidence 77777 89999999999775
No 82
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.40 E-value=5e-13 Score=108.04 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=73.6
Q ss_pred ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhh----cCC--ceEEEEeCCCChhHHHhCCCCCccEEEEEeC
Q 029057 89 GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPK----HIG--TKFIKLDAENAPFFVTKLGIKTLPCVIILRK 162 (200)
Q Consensus 89 ~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~----~~~--v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~ 162 (200)
+..++...+.....|+|.|||+||+.++++.|++.+.|.+ ||+ +.+.+|||+...+++.+|.|..+||+.+|+|
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 3456677777777799999999999999999999888765 563 9999999999999999999999999999999
Q ss_pred CeEEE-EEecccc
Q 029057 163 GIAID-RLVGFQD 174 (200)
Q Consensus 163 G~~~~-~~~G~~~ 174 (200)
|.... .+.|-.+
T Consensus 82 G~~~~rEYRg~Rs 94 (375)
T KOG0912|consen 82 GEMMKREYRGQRS 94 (375)
T ss_pred cchhhhhhccchh
Confidence 99877 4556554
No 83
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.39 E-value=5.2e-12 Score=96.80 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=65.9
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC-----------------------CChhHHHhCCCCCcc
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE-----------------------NAPFFVTKLGIKTLP 155 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~-----------------------~~~~l~~~~~i~~~P 155 (200)
+++.++|+||++||++|+.+.|.+.+++++ ++.++.|+.+ ....+...|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 456699999999999999999999999765 4666666643 223456788999999
Q ss_pred EEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 156 CVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 156 tl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+.+++ ++|+++.++.|..+ .+.++.+|.+
T Consensus 140 ~~~~id~~G~i~~~~~G~~~--------~~~l~~~l~~ 169 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLN--------NEVWTEGFLP 169 (173)
T ss_pred eEEEEcCCceEEEEEeccCC--------HHHHHHHHHH
Confidence 76666 89999999999765 5777777664
No 84
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.39 E-value=7.7e-12 Score=91.04 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=82.1
Q ss_pred eEEcChhHHHHHHhCCCcEEEEEecC--CChhhHHHHHHHHHHhhhcC-C-ceEEEEeCCCChhHHHhCCCCCccEEEEE
Q 029057 85 YREIGEGDFLAEVTGSEKAICHFYHK--EFYRCKIMDKHLKALAPKHI-G-TKFIKLDAENAPFFVTKLGIKTLPCVIIL 160 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~vvV~Fy~~--~c~~C~~~~~~l~~la~~~~-~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~ 160 (200)
+..++..++...+...+..|++|-.+ .++-+.-..=.|.+++++|+ . ++|++||++.++.++.+|||.++||+++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 45556677777776666666655443 46778888889999999998 3 89999999999999999999999999999
Q ss_pred eCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 161 RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 161 ~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+||+.+.+++|+.+ .+.+..+|.+
T Consensus 99 kdGk~v~~i~G~~~--------k~~l~~~I~~ 122 (132)
T PRK11509 99 TGGNYRGVLNGIHP--------WAELINLMRG 122 (132)
T ss_pred ECCEEEEEEeCcCC--------HHHHHHHHHH
Confidence 99999999999987 4677666664
No 85
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.38 E-value=1.9e-12 Score=94.48 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=56.7
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC----CceEEEEeCCCC------------------------hhHHHhCC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI----GTKFIKLDAENA------------------------PFFVTKLG 150 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~----~v~f~~i~~~~~------------------------~~l~~~~~ 150 (200)
.++.++|+||++||++|+.+.|.+.++.+++. ++.++.|+++.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 45669999999999999999999998877763 466666666533 34677899
Q ss_pred CCCccEEEEE-eCCeEEEE
Q 029057 151 IKTLPCVIIL-RKGIAIDR 168 (200)
Q Consensus 151 i~~~Ptl~~~-~~G~~~~~ 168 (200)
+.++|+++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999 69987765
No 86
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.37 E-value=3.8e-12 Score=94.74 Aligned_cols=70 Identities=13% Similarity=0.262 Sum_probs=56.1
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC---------CceEEEEeCCCC-------------------------hh
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI---------GTKFIKLDAENA-------------------------PF 144 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~---------~v~f~~i~~~~~-------------------------~~ 144 (200)
+++.++|+|||+||++|+.+.|.|.++..++. ++.++.|+.+.. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 45679999999999999999999998766432 477777776542 13
Q ss_pred HHHhCCCCCccEEEEE-eCCeEEEE
Q 029057 145 FVTKLGIKTLPCVIIL-RKGIAIDR 168 (200)
Q Consensus 145 l~~~~~i~~~Ptl~~~-~~G~~~~~ 168 (200)
+...|++.++||++++ ++|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 6678999999999999 78998765
No 87
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.37 E-value=8.1e-12 Score=102.22 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=63.6
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCC-----------ChhHHHhCCCCCccEEEEEeC-CeEEE
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAEN-----------APFFVTKLGIKTLPCVIILRK-GIAID 167 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~-----------~~~l~~~~~i~~~Ptl~~~~~-G~~~~ 167 (200)
...+||+||++||++|+.+.|.|..++++|. +.++.|+++. +..+.++|+|.++||++++.. |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 3459999999999999999999999999995 6666666654 346789999999999999964 55444
Q ss_pred -EEeccccCCCCCCCcHHHHHHHHH
Q 029057 168 -RLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 168 -~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
...|+.+ .+.|...+.
T Consensus 245 ~v~~G~~s--------~~eL~~~i~ 261 (271)
T TIGR02740 245 PIGFGVMS--------ADELVDRIL 261 (271)
T ss_pred EEEeCCCC--------HHHHHHHHH
Confidence 3447665 455655544
No 88
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.37 E-value=3.3e-12 Score=89.57 Aligned_cols=73 Identities=21% Similarity=0.383 Sum_probs=65.2
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhc--CCceEEEEeCCCC-----------------------hhHHHhCCCCC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKH--IGTKFIKLDAENA-----------------------PFFVTKLGIKT 153 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~--~~v~f~~i~~~~~-----------------------~~l~~~~~i~~ 153 (200)
.++.++|.||++||+.|+...+.+.++..++ +++.|+.|+++.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 3556999999999999999999999999999 5699999999885 67899999999
Q ss_pred ccEEEEE-eCCeEEEEEec
Q 029057 154 LPCVIIL-RKGIAIDRLVG 171 (200)
Q Consensus 154 ~Ptl~~~-~~G~~~~~~~G 171 (200)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999999 78999888765
No 89
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.36 E-value=3.9e-12 Score=87.06 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEE
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDR 168 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~ 168 (200)
.+.-+..|+++||++|....+.+.++++.++++.|..+|.++.++++.+|+|.++||+++ ||+.+..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~ 78 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF 78 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe
Confidence 333677899999999999999999999999999999999999999999999999999964 8987663
No 90
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.35 E-value=9.9e-12 Score=94.70 Aligned_cols=99 Identities=15% Similarity=0.266 Sum_probs=77.7
Q ss_pred EEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCC----------------------
Q 029057 86 REIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAEN---------------------- 141 (200)
Q Consensus 86 ~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~---------------------- 141 (200)
..++++.+.-....++.++|.||++||+.|+...+.+.++++++++ +.++.|+++.
T Consensus 47 ~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~ 126 (173)
T PRK03147 47 TDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDK 126 (173)
T ss_pred ecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECC
Confidence 3344444433333456699999999999999999999999999875 7888888753
Q ss_pred ChhHHHhCCCCCccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 142 APFFVTKLGIKTLPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 142 ~~~l~~~~~i~~~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
...+++.|++.++|+++++ ++|+.+....|... .+.+..+|.+
T Consensus 127 ~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~--------~~~l~~~l~~ 170 (173)
T PRK03147 127 GRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMT--------EEQLEEYLEK 170 (173)
T ss_pred cchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCC--------HHHHHHHHHH
Confidence 3467889999999998888 78999888888775 5778888765
No 91
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.35 E-value=6.1e-12 Score=86.64 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=53.1
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHhhhcC---CceEEEEeCCCC-------------------------hhHHHhCCCC
Q 029057 101 EKAICHFYHKEFYRCKIMDKHLKALAPKHI---GTKFIKLDAENA-------------------------PFFVTKLGIK 152 (200)
Q Consensus 101 ~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~---~v~f~~i~~~~~-------------------------~~l~~~~~i~ 152 (200)
+.++|+||++||++|+...|.+.++.++|+ ++.|+.|..+.. ..+.+.|+|.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 458999999999999999999999999999 588998887653 1377889999
Q ss_pred CccEEEEE-eCCeE
Q 029057 153 TLPCVIIL-RKGIA 165 (200)
Q Consensus 153 ~~Ptl~~~-~~G~~ 165 (200)
++|+++++ ++|++
T Consensus 82 ~iP~~~lld~~G~I 95 (95)
T PF13905_consen 82 GIPTLVLLDPDGKI 95 (95)
T ss_dssp SSSEEEEEETTSBE
T ss_pred cCCEEEEECCCCCC
Confidence 99999999 67763
No 92
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.33 E-value=7.1e-12 Score=91.75 Aligned_cols=72 Identities=10% Similarity=0.194 Sum_probs=57.0
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC----CceEEEEeCCCCh-------------------------hHHHhC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI----GTKFIKLDAENAP-------------------------FFVTKL 149 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~----~v~f~~i~~~~~~-------------------------~l~~~~ 149 (200)
+++.++|+||++||++|+...|.+.++++++. ++.++.|+++..+ .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 45669999999999999999999999887665 4667777665432 345679
Q ss_pred CCCCccEEEEE-eCCeEEEEEe
Q 029057 150 GIKTLPCVIIL-RKGIAIDRLV 170 (200)
Q Consensus 150 ~i~~~Ptl~~~-~~G~~~~~~~ 170 (200)
++.++|+++++ ++|+++.+..
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCCCCEEchhH
Confidence 99999999999 6898776543
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.30 E-value=2e-11 Score=87.88 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=63.2
Q ss_pred EcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeC---------------------CCChhH
Q 029057 87 EIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDA---------------------ENAPFF 145 (200)
Q Consensus 87 ~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~---------------------~~~~~l 145 (200)
.++++.+......+..++|.||++||++|+.+.|.+..+++++. +..+.++. +....+
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVI 85 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHH
Confidence 34444444444455679999999999999999999999987742 22222221 234568
Q ss_pred HHhCCCCCccEEEEEeCCeEEEEEecccc
Q 029057 146 VTKLGIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 146 ~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
++.|++.++|+++++.+|.++..+.|+.+
T Consensus 86 ~~~~~i~~~P~~~vid~~gi~~~~~g~~~ 114 (123)
T cd03011 86 SARWGVSVTPAIVIVDPGGIVFVTTGVTS 114 (123)
T ss_pred HHhCCCCcccEEEEEcCCCeEEEEeccCC
Confidence 89999999999999954448888889886
No 94
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-11 Score=106.42 Aligned_cols=88 Identities=22% Similarity=0.287 Sum_probs=71.8
Q ss_pred eEEcChhHHHHH-HhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeC
Q 029057 85 YREIGEGDFLAE-VTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRK 162 (200)
Q Consensus 85 v~~i~~~~~~~~-v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~ 162 (200)
...++...|... ....+.++|.||+|||++|+.+.|.+.+++..+.+ +.+..||++.++.+|..|+|.++||+.+|.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP 110 (383)
T ss_pred hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcC
Confidence 333334444444 44555699999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 029057 163 GIAIDRLVGF 172 (200)
Q Consensus 163 G~~~~~~~G~ 172 (200)
|.....+.|.
T Consensus 111 ~~~~~~~~~~ 120 (383)
T KOG0191|consen 111 GKKPIDYSGP 120 (383)
T ss_pred CCceeeccCc
Confidence 9444444453
No 95
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.27 E-value=6.7e-11 Score=90.74 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=57.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-------------hhHHHhCCC--CCccEEEEE-eCCeEE-
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-------------PFFVTKLGI--KTLPCVIIL-RKGIAI- 166 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-------------~~l~~~~~i--~~~Ptl~~~-~~G~~~- 166 (200)
+|.||++||++|+...|.+.+++++| ++.++.|+.+.. ..+...|++ .++|+.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 67799999999999999999999998 577777776533 125567885 699999999 899986
Q ss_pred EEEecccc
Q 029057 167 DRLVGFQD 174 (200)
Q Consensus 167 ~~~~G~~~ 174 (200)
..+.|..+
T Consensus 152 ~~~~G~~~ 159 (181)
T PRK13728 152 PLLQGATD 159 (181)
T ss_pred EEEECCCC
Confidence 57889886
No 96
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=3.3e-11 Score=114.58 Aligned_cols=85 Identities=19% Similarity=0.300 Sum_probs=68.2
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeC---C------------------------CChhHHHhC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDA---E------------------------NAPFFVTKL 149 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~---~------------------------~~~~l~~~~ 149 (200)
+.+.|||+||++||++|+...|.|++++++|++ +.|+.|.. + ....+...|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 456699999999999999999999999999975 66776632 1 133467789
Q ss_pred CCCCccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 150 GIKTLPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 150 ~i~~~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
++.++|+++++ ++|+++.++.|... .+.|+.+|.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~--------~~~l~~~l~ 533 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGH--------RKDLDDLVE 533 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccC--------HHHHHHHHH
Confidence 99999999999 89999999999664 355555554
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.24 E-value=6.1e-11 Score=86.07 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=61.4
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCC-----C----------------------ChhHHHhC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAE-----N----------------------APFFVTKL 149 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~-----~----------------------~~~l~~~~ 149 (200)
++..+||+||++||++|....|.|.++.++|.+ +.++.|... . ...+...|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 456699999999999999999999999999974 778777542 1 12356778
Q ss_pred CCCCccEEEEE-eCCeEEEEEecc
Q 029057 150 GIKTLPCVIIL-RKGIAIDRLVGF 172 (200)
Q Consensus 150 ~i~~~Ptl~~~-~~G~~~~~~~G~ 172 (200)
++.++|+.+++ ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 789999998884
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.21 E-value=1.4e-10 Score=86.08 Aligned_cols=87 Identities=18% Similarity=0.342 Sum_probs=69.5
Q ss_pred hCCCcEEEEEecC-CChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC---------------------hhHHHhCCCC-
Q 029057 98 TGSEKAICHFYHK-EFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA---------------------PFFVTKLGIK- 152 (200)
Q Consensus 98 ~~~~~vvV~Fy~~-~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~---------------------~~l~~~~~i~- 152 (200)
.+++.+||+||++ |||+|+...|.+.++.++|. ++.++.|..+.. ..+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4566689999999 99999999999999988865 388888776543 3477888988
Q ss_pred --------CccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 153 --------TLPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 153 --------~~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
++|+++++ ++|+++....|... + +...++..|
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~-~-----~~~~~~~~l 146 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP-D-----EESDLEAVL 146 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT-T-----SHHSHHHHH
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC-C-----CCCChhhcC
Confidence 99998887 99999999999986 2 245666554
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.20 E-value=1.2e-10 Score=82.67 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCC---CC-----------------hhHHHhCCCCCccEEE
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAE---NA-----------------PFFVTKLGIKTLPCVI 158 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~---~~-----------------~~l~~~~~i~~~Ptl~ 158 (200)
++.+||+||++||++|+.+.|.+.++++.+.+ +.++.+..+ +. ..+...|++.++|+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 56699999999999999999999999888754 666655211 11 1245567788888888
Q ss_pred EE-eCCeEEEE
Q 029057 159 IL-RKGIAIDR 168 (200)
Q Consensus 159 ~~-~~G~~~~~ 168 (200)
++ ++|+++.+
T Consensus 101 vid~~G~v~~~ 111 (114)
T cd02967 101 LLDEAGVIAAK 111 (114)
T ss_pred EECCCCeEEec
Confidence 88 57876553
No 100
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.2e-11 Score=107.54 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=71.1
Q ss_pred CceEEcChhHHHHHHhCCC-cEEEEEecCCChhhHHHHHHHHHHhhhcCC----ceEEEEeCCC--ChhHHHhCCCCCcc
Q 029057 83 GEYREIGEGDFLAEVTGSE-KAICHFYHKEFYRCKIMDKHLKALAPKHIG----TKFIKLDAEN--APFFVTKLGIKTLP 155 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~~~~-~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~----v~f~~i~~~~--~~~l~~~~~i~~~P 155 (200)
..+..++..+|..++..+. ..+|.||++|||+|+.+.|.++++|+.... ++++.|||.+ +..+|++|+|.++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 4688899999999998777 488999999999999999999999988754 8889999854 56799999999999
Q ss_pred EEEEEeCC
Q 029057 156 CVIILRKG 163 (200)
Q Consensus 156 tl~~~~~G 163 (200)
++.+|+-+
T Consensus 119 tlryf~~~ 126 (606)
T KOG1731|consen 119 TLRYFPPD 126 (606)
T ss_pred eeeecCCc
Confidence 99999544
No 101
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.17 E-value=9.7e-11 Score=102.70 Aligned_cols=105 Identities=17% Similarity=0.333 Sum_probs=85.2
Q ss_pred CCCce-EEcCh-hHHHHHHhCCC--cEEEEEecCCChhhHHHHHHH---HHHhhhcCCceEEEEeCCCC----hhHHHhC
Q 029057 81 GHGEY-REIGE-GDFLAEVTGSE--KAICHFYHKEFYRCKIMDKHL---KALAPKHIGTKFIKLDAENA----PFFVTKL 149 (200)
Q Consensus 81 ~~g~v-~~i~~-~~~~~~v~~~~--~vvV~Fy~~~c~~C~~~~~~l---~~la~~~~~v~f~~i~~~~~----~~l~~~~ 149 (200)
.++.. ..++. .++.+.+.++. +|+|+|||+||-.|+.+.+.. .+.+.+.+++++.++|++++ ..+.++|
T Consensus 451 ~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~ 530 (569)
T COG4232 451 SHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL 530 (569)
T ss_pred ccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc
Confidence 34444 56644 48888888777 799999999999999999875 45566778899999999887 3578899
Q ss_pred CCCCccEEEEEe-CCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 150 GIKTLPCVIILR-KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 150 ~i~~~Ptl~~~~-~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
++-++|++++|. +|++...+.|+.+ .+.++++|++.
T Consensus 531 ~~~G~P~~~ff~~~g~e~~~l~gf~~--------a~~~~~~l~~~ 567 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEPEILTGFLT--------ADAFLEHLERA 567 (569)
T ss_pred CCCCCCEEEEECCCCCcCcCCcceec--------HHHHHHHHHHh
Confidence 999999999995 8887777888876 68888888764
No 102
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.15 E-value=5.6e-10 Score=79.68 Aligned_cols=90 Identities=10% Similarity=0.202 Sum_probs=67.9
Q ss_pred HHHhCCCcEEEEEecCCChhhHHHHHH-H--HHHhhhcC-CceEEEEeCCC--ChhHHHhCCCCCccEEEEE-e-CCeEE
Q 029057 95 AEVTGSEKAICHFYHKEFYRCKIMDKH-L--KALAPKHI-GTKFIKLDAEN--APFFVTKLGIKTLPCVIIL-R-KGIAI 166 (200)
Q Consensus 95 ~~v~~~~~vvV~Fy~~~c~~C~~~~~~-l--~~la~~~~-~v~f~~i~~~~--~~~l~~~~~i~~~Ptl~~~-~-~G~~~ 166 (200)
.+..+...++|+|+++||++|+.|... | ..+.+.+. +..++.+|++. ...++..|++.++|+++++ . +|+.+
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 333445569999999999999999864 3 33443332 36777788764 4678999999999999999 4 79999
Q ss_pred EEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 167 DRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 167 ~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
.++.|..+ .+.+...|.+
T Consensus 92 ~~~~G~~~--------~~~f~~~L~~ 109 (114)
T cd02958 92 KVWSGNIT--------PEDLLSQLIE 109 (114)
T ss_pred EEEcCCCC--------HHHHHHHHHH
Confidence 99999986 5666666654
No 103
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.6e-11 Score=91.34 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=85.6
Q ss_pred CCceEEc-ChhHHHHHHhCCCc--EEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCCChhHHHhCCCC----
Q 029057 82 HGEYREI-GEGDFLAEVTGSEK--AICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAENAPFFVTKLGIK---- 152 (200)
Q Consensus 82 ~g~v~~i-~~~~~~~~v~~~~~--vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~~~~l~~~~~i~---- 152 (200)
.+.+.-. +.+.++.++..+.. ++|.||+.|.+.|..+.|.+.+|..+|.. .+|.+||+...|+.+.+|+|.
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcc
Confidence 3455556 55666666665554 99999999999999999999999999964 999999999999999999874
Q ss_pred --CccEEEEEeCCeEEEEEeccccCCCC--CCCcHHHH
Q 029057 153 --TLPCVIILRKGIAIDRLVGFQDLGGK--DDFTTKTL 186 (200)
Q Consensus 153 --~~Ptl~~~~~G~~~~~~~G~~~~g~~--~~~~~e~L 186 (200)
.+||+++|++|+++.|.--+...|.. -.|+.+.+
T Consensus 203 srQLPT~ilFq~gkE~~RrP~vd~~gra~s~~fSeenv 240 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKEVSRRPDVDVKGRAVSFPFSEENV 240 (265)
T ss_pred cccCCeEEEEccchhhhcCccccccCCcccccccHHHH
Confidence 79999999999999998877776553 24455543
No 104
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.9e-10 Score=96.72 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=83.5
Q ss_pred eEEcChhHHHHHHhCCCc-EEEEEecCCChhhHHHHHHHHHHhhhcC---CceEEEEeCCCChhHHHhCCCCCccEEEEE
Q 029057 85 YREIGEGDFLAEVTGSEK-AICHFYHKEFYRCKIMDKHLKALAPKHI---GTKFIKLDAENAPFFVTKLGIKTLPCVIIL 160 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~---~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~ 160 (200)
+.+++..+|...+...+. ++|.||+|||++|+.+.|.+.+++..+. .+.+..+|++....++..+++.++||+++|
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f 225 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF 225 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence 778888888877765554 8999999999999999999999998774 399999999988999999999999999999
Q ss_pred eCCeE-EEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 161 RKGIA-IDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 161 ~~G~~-~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
++|.. ...+.|... .+.+..++...
T Consensus 226 ~~~~~~~~~~~~~R~--------~~~i~~~v~~~ 251 (383)
T KOG0191|consen 226 PPGEEDIYYYSGLRD--------SDSIVSFVEKK 251 (383)
T ss_pred cCCCccccccccccc--------HHHHHHHHHhh
Confidence 88877 555556554 46666666543
No 105
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.08 E-value=5.1e-10 Score=81.42 Aligned_cols=82 Identities=9% Similarity=0.093 Sum_probs=55.2
Q ss_pred hHHHHHHhCCCcEEEEEecCCChhhHHHHHHH---HHHhhhcC-CceEEEEeCCCC-hhHHHhCCCCCccEEEEE-eCCe
Q 029057 91 GDFLAEVTGSEKAICHFYHKEFYRCKIMDKHL---KALAPKHI-GTKFIKLDAENA-PFFVTKLGIKTLPCVIIL-RKGI 164 (200)
Q Consensus 91 ~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l---~~la~~~~-~v~f~~i~~~~~-~~l~~~~~i~~~Ptl~~~-~~G~ 164 (200)
+.+..+..++.+++|.||++||++|+.|.... .++.+... +...+.++.+.. ..+. ..+ .++||++|+ .+|+
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~ 91 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLT 91 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCC
Confidence 34445555667799999999999999999764 22222221 234445655422 1111 234 689999999 8999
Q ss_pred EEEEEecccc
Q 029057 165 AIDRLVGFQD 174 (200)
Q Consensus 165 ~~~~~~G~~~ 174 (200)
++.++.|..+
T Consensus 92 vi~~i~Gy~~ 101 (130)
T cd02960 92 VRADITGRYS 101 (130)
T ss_pred Cccccccccc
Confidence 9999999876
No 106
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.02 E-value=3.3e-09 Score=82.44 Aligned_cols=85 Identities=16% Similarity=0.254 Sum_probs=62.0
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC--------------------CChhHHHhCCCCCccEEE
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE--------------------NAPFFVTKLGIKTLPCVI 158 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~--------------------~~~~l~~~~~i~~~Ptl~ 158 (200)
.+++++|.||++||++|+...|.+.++.+++ ++.++.|..+ ....+.+.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 4456999999999999999999999998765 4445544421 123567889999999888
Q ss_pred EE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 159 IL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 159 ~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
++ ++|++..+ |... +.+.++++|...
T Consensus 152 lID~~G~I~~~--g~~~-------~~~~le~ll~~l 178 (189)
T TIGR02661 152 LLDQDGKIRAK--GLTN-------TREHLESLLEAD 178 (189)
T ss_pred EECCCCeEEEc--cCCC-------CHHHHHHHHHHH
Confidence 87 78987764 3321 257788888754
No 107
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.01 E-value=2.4e-09 Score=85.77 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=63.8
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCC-------C----hhHH-HhCC--------------
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAEN-------A----PFFV-TKLG-------------- 150 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~-------~----~~l~-~~~~-------------- 150 (200)
.++.+||.||++||++|+...|.|.++.++|.+ +.++.|+++. . ..++ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 456699999999999999999999999999974 8898888641 1 1121 2221
Q ss_pred --------------------CCCccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 151 --------------------IKTLPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 151 --------------------i~~~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+...|+.+++ ++|+++.++.|... .+.|+..|.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~--------~~~le~~I~~ 232 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTS--------PFQIEKDIQK 232 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCC--------HHHHHHHHHH
Confidence 1235888888 99999999998765 4666666654
No 108
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.99 E-value=3.1e-09 Score=81.93 Aligned_cols=83 Identities=8% Similarity=0.026 Sum_probs=59.5
Q ss_pred HHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhh-cCC---ceEEEEeCCC--------------------------
Q 029057 92 DFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPK-HIG---TKFIKLDAEN-------------------------- 141 (200)
Q Consensus 92 ~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~-~~~---v~f~~i~~~~-------------------------- 141 (200)
.+...-..++..+|.|||+||++|+.-.|.+..++.+ ++- -.-+-||.++
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 3344444556699999999999999999999999754 321 0114444443
Q ss_pred ---ChhHHHhCCCCCccEE-EEE-eCCeEEEEEecccc
Q 029057 142 ---APFFVTKLGIKTLPCV-IIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 142 ---~~~l~~~~~i~~~Ptl-~~~-~~G~~~~~~~G~~~ 174 (200)
...+...|++.++|+. +++ ++|+++.++.|...
T Consensus 131 lD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~ 168 (184)
T TIGR01626 131 LDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALS 168 (184)
T ss_pred ECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCC
Confidence 2235567899999877 566 89999999999865
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.98 E-value=2.5e-09 Score=83.81 Aligned_cols=42 Identities=5% Similarity=-0.064 Sum_probs=37.1
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAE 140 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~ 140 (200)
+++.|||.||++||++|+...|.|.++.++|.+ +.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 456799999999999999999999999999974 888998763
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.98 E-value=4.5e-09 Score=68.21 Aligned_cols=68 Identities=25% Similarity=0.411 Sum_probs=53.1
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChh----HHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPF----FVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKD 179 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~----l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~ 179 (200)
|..||++||++|+.+.+.|.+ .++.|..+|++..+. +.+.+++.++|++++. |+. +.|+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~------ 65 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFD------ 65 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCC------
Confidence 568999999999999988876 358888999987754 4567999999999874 653 56654
Q ss_pred CCcHHHHHHHH
Q 029057 180 DFTTKTLEVLL 190 (200)
Q Consensus 180 ~~~~e~Le~~L 190 (200)
.+.+.++|
T Consensus 66 ---~~~i~~~i 73 (74)
T TIGR02196 66 ---PEKLDQLL 73 (74)
T ss_pred ---HHHHHHHh
Confidence 46777765
No 111
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.94 E-value=2.1e-09 Score=74.75 Aligned_cols=72 Identities=21% Similarity=0.526 Sum_probs=63.9
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCC-CChhHHHhCC--CCCccEEEEEeCCeEEEEEec
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAE-NAPFFVTKLG--IKTLPCVIILRKGIAIDRLVG 171 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~-~~~~l~~~~~--i~~~Ptl~~~~~G~~~~~~~G 171 (200)
...++++||++||++|+.+.|.+..+++.+.. +.|+.+++. ..+.+...|+ +..+|+++++.+|..+....|
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 45688999999999999999999999999985 999999997 7888999999 999999999999877666555
No 112
>smart00594 UAS UAS domain.
Probab=98.92 E-value=2e-08 Score=72.65 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=59.5
Q ss_pred hCCCcEEEEEecCCChhhHHHHHHH---HHHhhhcC-CceEEEEeCCCC--hhHHHhCCCCCccEEEEE-eCC-----eE
Q 029057 98 TGSEKAICHFYHKEFYRCKIMDKHL---KALAPKHI-GTKFIKLDAENA--PFFVTKLGIKTLPCVIIL-RKG-----IA 165 (200)
Q Consensus 98 ~~~~~vvV~Fy~~~c~~C~~~~~~l---~~la~~~~-~v~f~~i~~~~~--~~l~~~~~i~~~Ptl~~~-~~G-----~~ 165 (200)
.+.+.++|+|+++||++|..+.... .++.+... +..++.+|++.. ..++..|++.++|+++++ .+| ..
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 3445699999999999999998753 23333332 367767776644 568999999999999999 555 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHH
Q 029057 166 IDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 166 ~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
+.++.|..+ .+.|...|
T Consensus 105 ~~~~~G~~~--------~~~l~~~l 121 (122)
T smart00594 105 VGVVEGEIS--------PEELMTFL 121 (122)
T ss_pred eccccCCCC--------HHHHHHhh
Confidence 555555554 56666655
No 113
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.91 E-value=4.3e-09 Score=78.89 Aligned_cols=41 Identities=10% Similarity=-0.071 Sum_probs=35.5
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAE 140 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~ 140 (200)
.++.|||.||++||+ |+...|.|.++.++|.+ +.|+.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 456699999999999 99999999999999963 888888753
No 114
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.90 E-value=3.5e-08 Score=75.26 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=58.1
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC-----------------------------hhHHH
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA-----------------------------PFFVT 147 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~-----------------------------~~l~~ 147 (200)
....+||.||++||+.|....+.+.++..+|+ ++.|+.|.++.. ..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 45669999999999999999999999999997 488988877531 13566
Q ss_pred hCCCCCccEEEEE-eCCeEEEE
Q 029057 148 KLGIKTLPCVIIL-RKGIAIDR 168 (200)
Q Consensus 148 ~~~i~~~Ptl~~~-~~G~~~~~ 168 (200)
.|++..+|+++++ ++|+++.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEe
Confidence 7899999999999 78987754
No 115
>PLN02412 probable glutathione peroxidase
Probab=98.88 E-value=1.2e-08 Score=77.82 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=57.4
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCC-------C-----hhHHHhC----C----------
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAEN-------A-----PFFVTKL----G---------- 150 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~-------~-----~~l~~~~----~---------- 150 (200)
.++.+||.||++||++|+...|.|.++.++|.+ +.++.|+++. . ..+++++ .
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 456699999999999999999999999999974 8888887642 1 1112221 1
Q ss_pred --------------------CCCccEEEEE-eCCeEEEEEecccc
Q 029057 151 --------------------IKTLPCVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 151 --------------------i~~~Ptl~~~-~~G~~~~~~~G~~~ 174 (200)
+.+.|+.+++ ++|+++.++.|...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~ 152 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTS 152 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCC
Confidence 3345887888 89999999988875
No 116
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.87 E-value=7.1e-09 Score=69.63 Aligned_cols=69 Identities=10% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHHHHhCCCcEEEEEecCCChhhHHHHHHH---HHHhhh-cCCceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 92 DFLAEVTGSEKAICHFYHKEFYRCKIMDKHL---KALAPK-HIGTKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 92 ~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l---~~la~~-~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
.+..+..++.+++|+|+++||+.|+.|...+ ..+.+. -.+..++++|.+....... +...++|+++++.
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 4445556677799999999999999999776 334331 2358999999987654332 2226799999974
No 117
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.86 E-value=2.3e-08 Score=72.99 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=50.1
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhC---CCCCccEEEEE-eCCeEEEEEeccc
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKL---GIKTLPCVIIL-RKGIAIDRLVGFQ 173 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~---~i~~~Ptl~~~-~~G~~~~~~~G~~ 173 (200)
-++.|..+|||.|+...|.+.++++..|++.+-.+-.++++++...| +..++|+++++ ++|+++.++....
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGERP 118 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCCC
Confidence 66779999999999999999999999998777666667777666554 67899999999 6688888875553
No 118
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.85 E-value=1.8e-08 Score=75.49 Aligned_cols=86 Identities=9% Similarity=0.075 Sum_probs=61.2
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCC-------CC----hhHHHh-CC----C---------
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAE-------NA----PFFVTK-LG----I--------- 151 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~-------~~----~~l~~~-~~----i--------- 151 (200)
+++.+||.||++||++|+...|.+.++.++|. ++.|+.|+++ .. ..++++ ++ +
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 45568899999999999999999999999997 4889888852 11 122221 11 1
Q ss_pred -------------CCccE----EEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 152 -------------KTLPC----VIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 152 -------------~~~Pt----l~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
.++|+ .+++ ++|+++.++.|..+ .+.|+..|.+
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~--------~~~l~~~i~~ 151 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEP--------VEEIRPEITA 151 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCC--------HHHHHHHHHH
Confidence 14785 4444 99999999988875 4666666543
No 119
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.84 E-value=2e-08 Score=73.65 Aligned_cols=76 Identities=11% Similarity=0.189 Sum_probs=61.6
Q ss_pred CCCcEEEEEe-cCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC---------------------ChhHHHhCCCCCc
Q 029057 99 GSEKAICHFY-HKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN---------------------APFFVTKLGIKTL 154 (200)
Q Consensus 99 ~~~~vvV~Fy-~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~---------------------~~~l~~~~~i~~~ 154 (200)
.++.++|.|| +.||+.|....+.+.++..++. ++.++.|..+. ...+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3566889999 5899999999999999988875 47888776543 2346777898888
Q ss_pred ---------cEEEEE-eCCeEEEEEecccc
Q 029057 155 ---------PCVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 155 ---------Ptl~~~-~~G~~~~~~~G~~~ 174 (200)
|+.+++ ++|+++..+.|...
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~ 131 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKP 131 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCc
Confidence 898888 68999999999985
No 120
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.84 E-value=2.1e-08 Score=62.04 Aligned_cols=60 Identities=23% Similarity=0.461 Sum_probs=51.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHH---hCCCCCccEEEEEeCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVT---KLGIKTLPCVIILRKG 163 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~---~~~i~~~Ptl~~~~~G 163 (200)
++.||++||+.|..+.+.+.++....+++.+..++++..+.... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999985455569999999998876554 8899999999999877
No 121
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.80 E-value=2.1e-08 Score=65.89 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=44.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHh-----CCCCCccEEEEEeCCeEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTK-----LGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~-----~~i~~~Ptl~~~~~G~~~ 166 (200)
|+.||++||++|+.+.+.|.++. +.|-.+|+++.+..... +++.++|++ ++.+|..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 57899999999999999997774 44557888877665554 489999997 57788643
No 122
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.78 E-value=8.3e-08 Score=70.84 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCcEEEEEecCC-ChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-----------------------hhHHHhCCCCC-
Q 029057 99 GSEKAICHFYHKE-FYRCKIMDKHLKALAPKHIGTKFIKLDAENA-----------------------PFFVTKLGIKT- 153 (200)
Q Consensus 99 ~~~~vvV~Fy~~~-c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-----------------------~~l~~~~~i~~- 153 (200)
.++.+|+.||+.| |++|+...|.|.++.++++++.|+.|+.+.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 4556999999999 6999999999999999998888998887531 23556677753
Q ss_pred -----ccEEEEE-eCCeEEEEEecccc
Q 029057 154 -----LPCVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 154 -----~Ptl~~~-~~G~~~~~~~G~~~ 174 (200)
.|+.+++ ++|+++...+|...
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~ 131 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEI 131 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCc
Confidence 6888888 79999999998764
No 123
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.74 E-value=1.7e-07 Score=62.01 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=55.9
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEec-cccCCCCCCCcH
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVG-FQDLGGKDDFTT 183 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G-~~~~g~~~~~~~ 183 (200)
|.+++++|+.|..+.+.+++++..+. +.+-.++....+.+ .+||+.++|++++ ||+. .+.| ... .
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~--------~ 68 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPS--------K 68 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--H--------H
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCC--------H
Confidence 34578889999999999999999984 77777777666766 9999999999855 8974 4578 443 6
Q ss_pred HHHHHHHH
Q 029057 184 KTLEVLLV 191 (200)
Q Consensus 184 e~Le~~L~ 191 (200)
+.|.++|.
T Consensus 69 ~el~~~l~ 76 (76)
T PF13192_consen 69 EELKELLE 76 (76)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 78888774
No 124
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.69 E-value=3.3e-07 Score=69.82 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=60.6
Q ss_pred CCCcEEEEEecCC-ChhhHHHHHHHHHHhhhcCCceEEEEeCCC-----------------------ChhHHHhCCCCCc
Q 029057 99 GSEKAICHFYHKE-FYRCKIMDKHLKALAPKHIGTKFIKLDAEN-----------------------APFFVTKLGIKTL 154 (200)
Q Consensus 99 ~~~~vvV~Fy~~~-c~~C~~~~~~l~~la~~~~~v~f~~i~~~~-----------------------~~~l~~~~~i~~~ 154 (200)
.++.+||.||++| |++|....|.|.++++++.++.++.|..+. ...+++.|++...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 3556999999999 999999999999999998778888776543 1256778888877
Q ss_pred c---------EEEEE-eCCeEEEEEeccc
Q 029057 155 P---------CVIIL-RKGIAIDRLVGFQ 173 (200)
Q Consensus 155 P---------tl~~~-~~G~~~~~~~G~~ 173 (200)
| +.+++ ++|+++...++..
T Consensus 123 ~~~~~g~~~r~tfvId~~G~I~~~~~~~~ 151 (167)
T PRK00522 123 EGPLKGLLARAVFVLDENNKVVYSELVPE 151 (167)
T ss_pred ccccCCceeeEEEEECCCCeEEEEEECCC
Confidence 7 77777 7999998887654
No 125
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.66 E-value=1.4e-07 Score=67.65 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=57.4
Q ss_pred CCCcEEEEEecC-CChhhHHHHHHHHHHhhhcC--CceEEEEeCCC---------------------ChhHHHhCCCC--
Q 029057 99 GSEKAICHFYHK-EFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN---------------------APFFVTKLGIK-- 152 (200)
Q Consensus 99 ~~~~vvV~Fy~~-~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~---------------------~~~l~~~~~i~-- 152 (200)
.++++||.||++ ||+.|....+.|.++..+|+ ++.++.|..+. ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 456799999999 99999999999999999887 58998887654 23477888988
Q ss_pred ----CccEEEEE-eCCeEEE
Q 029057 153 ----TLPCVIIL-RKGIAID 167 (200)
Q Consensus 153 ----~~Ptl~~~-~~G~~~~ 167 (200)
.+|+++++ ++|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 99999999 7787765
No 126
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.3e-08 Score=79.57 Aligned_cols=89 Identities=24% Similarity=0.303 Sum_probs=77.1
Q ss_pred eEEc-ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCC
Q 029057 85 YREI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG 163 (200)
Q Consensus 85 v~~i-~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G 163 (200)
+..+ ...+| ...+...++++||++||.+|..+...+..+++..+++.|++++.+..+.++..+.+.+.|.+.++.+|
T Consensus 3 v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecc
Confidence 3445 45566 22344458899999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEeccccC
Q 029057 164 IAIDRLVGFQDL 175 (200)
Q Consensus 164 ~~~~~~~G~~~~ 175 (200)
+.+.++.|....
T Consensus 81 ~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 81 EKVDRLSGADPP 92 (227)
T ss_pred hhhhhhhccCcH
Confidence 999999888763
No 127
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=4.7e-07 Score=64.50 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=71.3
Q ss_pred EEc-ChhHHHHHHhCCCc--EEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 86 REI-GEGDFLAEVTGSEK--AICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 86 ~~i-~~~~~~~~v~~~~~--vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
..+ +..+..+++..... |||-|..+|-|.|..|...|.+.+++..+ ..++-+|+++-+++.+-|++...||+++|-
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 345 67788888865544 89999999999999999999999999988 888899999999999999999999999997
Q ss_pred CCeEEE
Q 029057 162 KGIAID 167 (200)
Q Consensus 162 ~G~~~~ 167 (200)
|++-..
T Consensus 86 n~kHmk 91 (142)
T KOG3414|consen 86 NNKHMK 91 (142)
T ss_pred cCceEE
Confidence 776543
No 128
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.61 E-value=4e-07 Score=61.43 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=49.2
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh----hHHHhCC--CCCccEEEEEeCCeEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP----FFVTKLG--IKTLPCVIILRKGIAI 166 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~----~l~~~~~--i~~~Ptl~~~~~G~~~ 166 (200)
|+.|+.+||+.|+.+.+.|.++..++.++.+..+|++..+ .+....+ ...+|+++ .+|+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i 69 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI 69 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE
Confidence 6789999999999999999999988878999999998753 4544444 47899964 588754
No 129
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.59 E-value=2.5e-07 Score=61.78 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=46.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-----hHHHhCCCCCccEEEEEeCCeEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-----FFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-----~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
|+.|+++||++|+.+.+.|.++.-. +...++.|+.+.+. .+.+.+++.++|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 4789999999999999999998732 12677788776553 36667899999996 5588643
No 130
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.59 E-value=5.6e-07 Score=71.33 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=56.4
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC-----------CChhHHHhCCCCCccEEEEE-eCC-eEEEE
Q 029057 102 KAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE-----------NAPFFVTKLGIKTLPCVIIL-RKG-IAIDR 168 (200)
Q Consensus 102 ~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~-----------~~~~l~~~~~i~~~Ptl~~~-~~G-~~~~~ 168 (200)
.-+++||.+.|+.|..+.|++..++.+| ++.++.|++| .++.+.++++|..+|+++++ .++ +...-
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv 200 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPV 200 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEE
Confidence 3788999999999999999999999999 6666666555 34668899999999999888 445 33333
Q ss_pred Eecccc
Q 029057 169 LVGFQD 174 (200)
Q Consensus 169 ~~G~~~ 174 (200)
-.|+.+
T Consensus 201 ~~G~~s 206 (215)
T PF13728_consen 201 SQGFMS 206 (215)
T ss_pred eeecCC
Confidence 347765
No 131
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.59 E-value=4.6e-07 Score=67.79 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=58.5
Q ss_pred CCCcEEEEEecC-CChhhHHHHHHHHHHhhhcC--CceEEEEeCCC---------------------ChhHHHhCCCCCc
Q 029057 99 GSEKAICHFYHK-EFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN---------------------APFFVTKLGIKTL 154 (200)
Q Consensus 99 ~~~~vvV~Fy~~-~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~---------------------~~~l~~~~~i~~~ 154 (200)
+++.+||+||+. ||+.|....+.+.++.+++. ++.|+.|..+. ...+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 456799999976 68889999999999988875 48888887643 2246677887654
Q ss_pred ------------cEEEEE-eCCeEEEEEecccc
Q 029057 155 ------------PCVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 155 ------------Ptl~~~-~~G~~~~~~~G~~~ 174 (200)
|+.+++ ++|+++..+.|+..
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~ 141 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKT 141 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCc
Confidence 666777 79999999999865
No 132
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.57 E-value=6.3e-07 Score=66.15 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=33.2
Q ss_pred Cc-EEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC
Q 029057 101 EK-AICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN 141 (200)
Q Consensus 101 ~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~ 141 (200)
+. +|+.|+++||+.|+...|.|.++.+++. ++.++.|..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 44 5555569999999999999999999884 58888887654
No 133
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.56 E-value=1.5e-07 Score=70.04 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=53.3
Q ss_pred hCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC----C--ceEEEEeCCC-----------------------ChhHHHh
Q 029057 98 TGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI----G--TKFIKLDAEN-----------------------APFFVTK 148 (200)
Q Consensus 98 ~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~----~--v~f~~i~~~~-----------------------~~~l~~~ 148 (200)
..++.|.++|.|.||++|+.+-|++.++.+... . |.|+.-|-+. ...++.+
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 455668999999999999999999988766543 2 5555544332 1247789
Q ss_pred CCCCCccEEEEE-eCCeEEEE
Q 029057 149 LGIKTLPCVIIL-RKGIAIDR 168 (200)
Q Consensus 149 ~~i~~~Ptl~~~-~~G~~~~~ 168 (200)
|.|.++|++.+. .+|..+..
T Consensus 111 y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cccCcCceeEEecCCCCEehH
Confidence 999999999888 78876654
No 134
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.55 E-value=1e-06 Score=67.28 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCCcEEEEEe-cCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC----------------------------hhHHH
Q 029057 99 GSEKAICHFY-HKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA----------------------------PFFVT 147 (200)
Q Consensus 99 ~~~~vvV~Fy-~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~----------------------------~~l~~ 147 (200)
+++.+||.|| ++||+.|....+.|.+++++|. ++.++.|..+.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3456889999 8999999999999999999885 377777765431 12456
Q ss_pred hCCCC------CccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 148 KLGIK------TLPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 148 ~~~i~------~~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
.|++. .+|+.+++ ++|+++..+++....+. ..+.+...|.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~----~~~~il~~l~ 154 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGR----SVDETLRVLD 154 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCC----CHHHHHHHHH
Confidence 67775 57888888 79999999987755432 2344555554
No 135
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.55 E-value=7.5e-07 Score=66.00 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=56.4
Q ss_pred CcEEEEEe-cCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC---------------------C--hhHHHhCCCC--
Q 029057 101 EKAICHFY-HKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN---------------------A--PFFVTKLGIK-- 152 (200)
Q Consensus 101 ~~vvV~Fy-~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~---------------------~--~~l~~~~~i~-- 152 (200)
+.+||.|| ++||+.|....|.+.++++++. ++.++.|..+. . ..+...|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 55777777 9999999999999999999886 48888776542 2 3456677876
Q ss_pred --Ccc--EEEEE-eCCeEEEEEeccc
Q 029057 153 --TLP--CVIIL-RKGIAIDRLVGFQ 173 (200)
Q Consensus 153 --~~P--tl~~~-~~G~~~~~~~G~~ 173 (200)
++| +.+++ ++|+++..+.|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 333 77777 7999999998887
No 136
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.55 E-value=9.7e-07 Score=68.46 Aligned_cols=90 Identities=10% Similarity=0.175 Sum_probs=64.9
Q ss_pred CCCcEEEEEe-cCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC-------------------------ChhHHHhCC
Q 029057 99 GSEKAICHFY-HKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN-------------------------APFFVTKLG 150 (200)
Q Consensus 99 ~~~~vvV~Fy-~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~-------------------------~~~l~~~~~ 150 (200)
.++.+||.|| +.||+.|....+.|.++..+|. ++.++.|.++. ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3556999999 9999999999999999988875 47777766543 124667788
Q ss_pred CC------CccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 151 IK------TLPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 151 i~------~~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+. ..|+.+++ ++|+++....+....+. ..+.+.+.|..
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~----~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGR----DASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCC----CHHHHHHHHHH
Confidence 76 46988888 79999888776544332 24555555543
No 137
>PHA03050 glutaredoxin; Provisional
Probab=98.53 E-value=4.3e-07 Score=64.26 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=63.6
Q ss_pred HHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCC---C----hhHHHhCCCCCccEEEEEeCCe
Q 029057 92 DFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAEN---A----PFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 92 ~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~---~----~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
.+.+.+.+...| +.|..+|||+|+.....|.++.-.++. |-.+|+++ . ..+.+..|...+|++ |.+|+
T Consensus 4 ~~v~~~i~~~~V-~vys~~~CPyC~~ak~~L~~~~i~~~~--~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~ 78 (108)
T PHA03050 4 EFVQQRLANNKV-TIFVKFTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKT 78 (108)
T ss_pred HHHHHHhccCCE-EEEECCCChHHHHHHHHHHHcCCCcCC--cEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCE
Confidence 445555555554 569999999999999999888665544 44445544 2 235555688899996 55887
Q ss_pred EEEEEeccccCCCCCCCcHHHHHHHHHHcCCccc
Q 029057 165 AIDRLVGFQDLGGKDDFTTKTLEVLLVKKGIASA 198 (200)
Q Consensus 165 ~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~vi~~ 198 (200)
.+. |+.++-. -.....|...|...|++..
T Consensus 79 ~iG---G~ddl~~--l~~~g~L~~~l~~~~~~~~ 107 (108)
T PHA03050 79 SIG---GYSDLLE--IDNMDALGDILSSIGVLRT 107 (108)
T ss_pred EEe---ChHHHHH--HHHcCCHHHHHHHcccccc
Confidence 654 4443211 0113468889999998864
No 138
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.52 E-value=4.9e-07 Score=69.85 Aligned_cols=42 Identities=14% Similarity=0.009 Sum_probs=34.2
Q ss_pred CCCcE-EEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCC
Q 029057 99 GSEKA-ICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAE 140 (200)
Q Consensus 99 ~~~~v-vV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~ 140 (200)
.++.+ |+.||++||++|+...|.|.++.++|. ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 34444 456699999999999999999999987 4888888753
No 139
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.52 E-value=4.6e-08 Score=76.84 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=76.3
Q ss_pred ceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 84 EYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
.++.++++++...+ .+-.++.|++||||.|+...|+|..+|.--.+ +++.+||++.+|-+.-+|-+..+|||.=.+
T Consensus 25 ~~~~~~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 57788999998765 34577899999999999999999999875444 999999999999999999999999988889
Q ss_pred CCeEEEEEeccccC
Q 029057 162 KGIAIDRLVGFQDL 175 (200)
Q Consensus 162 ~G~~~~~~~G~~~~ 175 (200)
+|. ..++.|..+.
T Consensus 103 DGe-FrrysgaRdk 115 (248)
T KOG0913|consen 103 DGE-FRRYSGARDK 115 (248)
T ss_pred ccc-cccccCcccc
Confidence 996 5778888873
No 140
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.47 E-value=8.9e-07 Score=63.50 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=51.3
Q ss_pred hHHHHHHhC----CCcEEEEEec-------CCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCCh-------hHHH--hC
Q 029057 91 GDFLAEVTG----SEKAICHFYH-------KEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAP-------FFVT--KL 149 (200)
Q Consensus 91 ~~~~~~v~~----~~~vvV~Fy~-------~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~-------~l~~--~~ 149 (200)
++|.+.+.. +++++|.|++ +|||.|....|.+.+.....++ ..|+.+.+..-+ .+.. ++
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 455555543 3448888875 5999999999999998777764 899988874322 1222 59
Q ss_pred CCCCccEEEEEeCCeEEEEEeccc
Q 029057 150 GIKTLPCVIILRKGIAIDRLVGFQ 173 (200)
Q Consensus 150 ~i~~~Ptl~~~~~G~~~~~~~G~~ 173 (200)
+++++||++-|.+| .++++-.
T Consensus 86 ~l~~IPTLi~~~~~---~rL~e~e 106 (119)
T PF06110_consen 86 KLKGIPTLIRWETG---ERLVEEE 106 (119)
T ss_dssp ---SSSEEEECTSS----EEEHHH
T ss_pred eeeecceEEEECCC---Cccchhh
Confidence 99999999999777 4455443
No 141
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.45 E-value=2.1e-06 Score=55.30 Aligned_cols=60 Identities=23% Similarity=0.482 Sum_probs=43.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHh----CCCCCccEEEEEeCCeEEEEEeccc
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTK----LGIKTLPCVIILRKGIAIDRLVGFQ 173 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~----~~i~~~Ptl~~~~~G~~~~~~~G~~ 173 (200)
++.|+++||++|..+...+.+. ++.|..++++..+..... .++..+|++++ +|+ .+.|..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~ 65 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFR 65 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCC
Confidence 5789999999999999888763 567777888776544333 37889999865 553 445654
No 142
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.42 E-value=1.5e-06 Score=63.56 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=59.5
Q ss_pred CCCcEEEEEe-cCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC----------------------ChhHHHhCCCCC
Q 029057 99 GSEKAICHFY-HKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN----------------------APFFVTKLGIKT 153 (200)
Q Consensus 99 ~~~~vvV~Fy-~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~----------------------~~~l~~~~~i~~ 153 (200)
.++.++|.|| +.||+.|....+.+.++..++. ++.|+.|..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 4566888999 7899999999999999998873 58888887643 123567778776
Q ss_pred cc---------EEEEE-eCCeEEEEEecccc
Q 029057 154 LP---------CVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 154 ~P---------tl~~~-~~G~~~~~~~G~~~ 174 (200)
.| +++++ ++|+++.+..|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 66 66777 68999999998875
No 143
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.39 E-value=8.5e-06 Score=63.25 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=69.7
Q ss_pred CceEEcChhHHHHHHhCCCcEEEEEe-cCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC------------------
Q 029057 83 GEYREIGEGDFLAEVTGSEKAICHFY-HKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN------------------ 141 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~~~~~vvV~Fy-~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~------------------ 141 (200)
|.+..++-++| .++.+|+.|| +.||+.|....+.|.++..+|. ++.++.|..+.
T Consensus 19 g~~~~v~L~d~-----~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~ 93 (187)
T PRK10382 19 GEFIEVTEKDT-----EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIK 93 (187)
T ss_pred CcceEEEHHHh-----CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCc
Confidence 44555554444 3456889999 9999999999999999998885 46677666543
Q ss_pred -------ChhHHHhCCC----CCc--cEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 142 -------APFFVTKLGI----KTL--PCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 142 -------~~~l~~~~~i----~~~--Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
...+++.|++ .++ |+.+++ ++|+++...+.....+. ..+.+-+.|.
T Consensus 94 fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~----~~~eil~~l~ 153 (187)
T PRK10382 94 YAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGR----DASDLLRKIK 153 (187)
T ss_pred eeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCC----CHHHHHHHHH
Confidence 2356788888 366 998888 79999888776544332 2455555554
No 144
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.3e-06 Score=62.03 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=59.8
Q ss_pred CCcEEEEEecCCChhhHHHHHHH---HHHhhhcCC-ceEEEEeCCC----------------ChhHHHhCCCCCccEEEE
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHL---KALAPKHIG-TKFIKLDAEN----------------APFFVTKLGIKTLPCVII 159 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l---~~la~~~~~-v~f~~i~~~~----------------~~~l~~~~~i~~~Ptl~~ 159 (200)
....++.|-++.|+.|..+...+ .++.+-+.. ..++++++.. ..+|++.|+++++||+++
T Consensus 42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF 121 (182)
T COG2143 42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF 121 (182)
T ss_pred CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence 33488999999999999998766 334444433 6777777643 237999999999999999
Q ss_pred E-eCCeEEEEEeccccC
Q 029057 160 L-RKGIAIDRLVGFQDL 175 (200)
Q Consensus 160 ~-~~G~~~~~~~G~~~~ 175 (200)
| ++|+.+..+-|+.+.
T Consensus 122 fdk~Gk~Il~lPGY~pp 138 (182)
T COG2143 122 FDKTGKTILELPGYMPP 138 (182)
T ss_pred EcCCCCEEEecCCCCCH
Confidence 9 789999999999873
No 145
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.38 E-value=5.1e-06 Score=56.24 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=55.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh----hHHHhCCC--CCccEEEEEeCCeEEEEEeccccCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP----FFVTKLGI--KTLPCVIILRKGIAIDRLVGFQDLGG 177 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~----~l~~~~~i--~~~Ptl~~~~~G~~~~~~~G~~~~g~ 177 (200)
|+.|+.+|||.|..+...|.++...++++.+..+|++... .+...++- ..+|++ |.+|+.+ -|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i--fi~g~~i---gG------ 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQI--FVDEKHV---GG------ 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE--EECCEEe---cC------
Confidence 6789999999999999999999888878888888887533 45566664 789997 4477642 12
Q ss_pred CCCCcHHHHHHHHHHc
Q 029057 178 KDDFTTKTLEVLLVKK 193 (200)
Q Consensus 178 ~~~~~~e~Le~~L~~~ 193 (200)
.++|.+++.++
T Consensus 71 -----~~dl~~~~~~~ 81 (86)
T TIGR02183 71 -----CTDFEQLVKEN 81 (86)
T ss_pred -----HHHHHHHHHhc
Confidence 25677776654
No 146
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.36 E-value=1.6e-06 Score=63.69 Aligned_cols=42 Identities=7% Similarity=0.063 Sum_probs=35.4
Q ss_pred CCCcEEEEEecCCChh-hHHHHHHHHHHhhhcCC-----ceEEEEeCC
Q 029057 99 GSEKAICHFYHKEFYR-CKIMDKHLKALAPKHIG-----TKFIKLDAE 140 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~-C~~~~~~l~~la~~~~~-----v~f~~i~~~ 140 (200)
.++.+||.||++||++ |....+.+.++.+++.+ +.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4566999999999998 99999999999988853 788888764
No 147
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=3e-06 Score=60.01 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=54.6
Q ss_pred hCCCcEEEEEec--------CCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChh-------HHHhCCC-CCccEEEEE
Q 029057 98 TGSEKAICHFYH--------KEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPF-------FVTKLGI-KTLPCVIIL 160 (200)
Q Consensus 98 ~~~~~vvV~Fy~--------~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~-------l~~~~~i-~~~Ptl~~~ 160 (200)
.+.+.++|.|++ ||||.|.+..|.+.+.-+..+. +.|+.+++.+-|. +....++ .++||++=|
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw 102 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW 102 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence 344558899975 6999999999999998887775 9999999865432 4455566 899999999
Q ss_pred eCCeEEEEEecc
Q 029057 161 RKGIAIDRLVGF 172 (200)
Q Consensus 161 ~~G~~~~~~~G~ 172 (200)
+++ ..+..|.
T Consensus 103 ~~~--~~rL~~~ 112 (128)
T KOG3425|consen 103 KRQ--PQRLDGL 112 (128)
T ss_pred cCc--cccchHh
Confidence 752 3444444
No 148
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.33 E-value=6.1e-06 Score=66.85 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=53.6
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-----------hhHHHhCCCCCccEEEEE-eCCeEEE-E
Q 029057 102 KAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-----------PFFVTKLGIKTLPCVIIL-RKGIAID-R 168 (200)
Q Consensus 102 ~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-----------~~l~~~~~i~~~Ptl~~~-~~G~~~~-~ 168 (200)
.-+++||.+.|+.|..+.|+++.++++|. +.++.|.+|.. ..+++++|+..+|++++. ++++... -
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv 230 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPL 230 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEE
Confidence 37889999999999999999999999995 44444444433 337889999999998888 5533333 3
Q ss_pred Eecccc
Q 029057 169 LVGFQD 174 (200)
Q Consensus 169 ~~G~~~ 174 (200)
-.|+.+
T Consensus 231 ~~G~iS 236 (256)
T TIGR02739 231 AYGFIS 236 (256)
T ss_pred eeccCC
Confidence 336665
No 149
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.33 E-value=1.1e-05 Score=58.18 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=67.5
Q ss_pred EEc-ChhHHHHHHhCCCc--EEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccE-EEEE
Q 029057 86 REI-GEGDFLAEVTGSEK--AICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPC-VIIL 160 (200)
Q Consensus 86 ~~i-~~~~~~~~v~~~~~--vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Pt-l~~~ 160 (200)
..+ ++.+.++++..... ||+.|..+|-+.|..+...|.+.+++..+ ..++.+|+++-|++.+.|.+. -|+ ++||
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 345 67888888865443 88999999999999999999999999988 889999999999999999998 785 5555
Q ss_pred eCCeEEEEEecc
Q 029057 161 RKGIAIDRLVGF 172 (200)
Q Consensus 161 ~~G~~~~~~~G~ 172 (200)
-+++-+.-=.|-
T Consensus 82 ~rnkhm~vD~Gt 93 (133)
T PF02966_consen 82 FRNKHMMVDFGT 93 (133)
T ss_dssp ETTEEEEEESSS
T ss_pred ecCeEEEEEecC
Confidence 677754433333
No 150
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.33 E-value=2.5e-05 Score=59.61 Aligned_cols=105 Identities=20% Similarity=0.325 Sum_probs=84.4
Q ss_pred CCCceEEcChhHHHHHHhCCCc-EEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCC--CccE
Q 029057 81 GHGEYREIGEGDFLAEVTGSEK-AICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIK--TLPC 156 (200)
Q Consensus 81 ~~g~v~~i~~~~~~~~v~~~~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~--~~Pt 156 (200)
.+..+.++|.+++........+ +++.|+.........+...+..+|.++.+ +.|+.+|++..+.++..+++. .+|+
T Consensus 75 ~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~ 154 (184)
T PF13848_consen 75 SFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPA 154 (184)
T ss_dssp SSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSE
T ss_pred ccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCE
Confidence 5777999999999888777655 77788877788899999999999999988 999999999999999999998 8999
Q ss_pred EEEEe-CCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 157 VIILR-KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 157 l~~~~-~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
++++. ++.. ..+. .. +.++.+.|.+||..
T Consensus 155 ~vi~~~~~~~-~~~~-~~-----~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 155 LVIFDSNKGK-YYYL-PE-----GEITPESIEKFLND 184 (184)
T ss_dssp EEEEETTTSE-EEE---S-----SCGCHHHHHHHHHH
T ss_pred EEEEECCCCc-EEcC-CC-----CCCCHHHHHHHhcC
Confidence 99996 3322 2221 12 25668999999863
No 151
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.31 E-value=3.2e-06 Score=56.17 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=44.2
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-----hHHHhCCCCCccEEEEEeCCeE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-----FFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-----~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
|+.|+++|||.|..+.+.|.++... ..++.++.+... .+.+..+..++|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 5789999999999999999998774 467777776552 34556788999995 567865
No 152
>PRK15000 peroxidase; Provisional
Probab=98.29 E-value=1.1e-05 Score=63.28 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=62.4
Q ss_pred CCCcEEEEEecC-CChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC----------------------------hhHHH
Q 029057 99 GSEKAICHFYHK-EFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA----------------------------PFFVT 147 (200)
Q Consensus 99 ~~~~vvV~Fy~~-~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~----------------------------~~l~~ 147 (200)
+.+.+|++||.. ||+.|....+.|.+++++|. ++.++.|.++.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 355699999994 99999999999999999886 477777765521 23566
Q ss_pred hCCCC------CccEEEEE-eCCeEEEEEeccccCCC
Q 029057 148 KLGIK------TLPCVIIL-RKGIAIDRLVGFQDLGG 177 (200)
Q Consensus 148 ~~~i~------~~Ptl~~~-~~G~~~~~~~G~~~~g~ 177 (200)
.|++. .+|+.+++ ++|++.....|....|.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr 149 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGR 149 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCC
Confidence 67876 68999998 69999999888877664
No 153
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.27 E-value=1.3e-05 Score=60.54 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=59.1
Q ss_pred CCCceEEc--ChhHHHHHHhCCCcEEEEEecCCChhhHHHHH-HH--HHHhhhcC-CceEEEEeCCCChhHHHhC-----
Q 029057 81 GHGEYREI--GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDK-HL--KALAPKHI-GTKFIKLDAENAPFFVTKL----- 149 (200)
Q Consensus 81 ~~g~v~~i--~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~-~l--~~la~~~~-~v~f~~i~~~~~~~l~~~~----- 149 (200)
....|... +++.|..+-...++++|+++.+||..|+.|.. .+ .++++-+- +..-++||.++.|++...|
T Consensus 16 a~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~ 95 (163)
T PF03190_consen 16 AHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQ 95 (163)
T ss_dssp TTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHH
T ss_pred ccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHH
Confidence 34556555 56788888788888999999999999999985 23 23333321 2466789999999998887
Q ss_pred ---CCCCccEEEEE-eCCeEEEEEeccc
Q 029057 150 ---GIKTLPCVIIL-RKGIAIDRLVGFQ 173 (200)
Q Consensus 150 ---~i~~~Ptl~~~-~~G~~~~~~~G~~ 173 (200)
+..|.|+.+|. .+|+++...+.+.
T Consensus 96 ~~~~~gGwPl~vfltPdg~p~~~~tY~P 123 (163)
T PF03190_consen 96 AMSGSGGWPLTVFLTPDGKPFFGGTYFP 123 (163)
T ss_dssp HHHS---SSEEEEE-TTS-EEEEESS--
T ss_pred HhcCCCCCCceEEECCCCCeeeeeeecC
Confidence 78899999888 8999887644443
No 154
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.27 E-value=7.3e-06 Score=51.40 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=43.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhH----HHhCCCCCccEEEEEeCCeEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFF----VTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l----~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
|+.|+.+||+.|+.....|++. ++.|-.+|++..+.. .+..+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5789999999999999988554 477888888887543 33349999999765 88753
No 155
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.26 E-value=4.3e-06 Score=67.07 Aligned_cols=81 Identities=16% Similarity=0.372 Sum_probs=57.7
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEe------------------------------------------
Q 029057 101 EKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLD------------------------------------------ 138 (200)
Q Consensus 101 ~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~------------------------------------------ 138 (200)
+.+|+.|..+.||+|+.+.+.+.++.+.-..++++-+.
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~ 187 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVD 187 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccch
Confidence 44788999999999999999998875431112222111
Q ss_pred CCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 139 AENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 139 ~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
++.+..+++++||.++||++ |.||+.+ .|+.+ .+.|+.+|.+.
T Consensus 188 v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~--------~~~L~~~l~~~ 230 (232)
T PRK10877 188 IADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQG--------PKEMKAFLDEH 230 (232)
T ss_pred HHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCC--------HHHHHHHHHHc
Confidence 11233578889999999988 7899754 67765 68899888764
No 156
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.26 E-value=4.9e-06 Score=58.48 Aligned_cols=90 Identities=14% Similarity=0.275 Sum_probs=67.8
Q ss_pred eEEcChhHHHHHHhCCCcEEEEEecCCChh---hHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEE
Q 029057 85 YREIGEGDFLAEVTGSEKAICHFYHKEFYR---CKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIIL 160 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~---C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~ 160 (200)
+..++..++...+...+..++ |++..|.. |....=++.+|.+.|++ ....-+.......+..+|++..+|++++|
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~ 89 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFF 89 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEE
T ss_pred CeeechhhHHHHHhCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEE
Confidence 677888888888877666655 44444444 44555578899999988 56656665667889999999999999999
Q ss_pred eCCeEEEEEeccccC
Q 029057 161 RKGIAIDRLVGFQDL 175 (200)
Q Consensus 161 ~~G~~~~~~~G~~~~ 175 (200)
++|+.+..+.|+.++
T Consensus 90 R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 90 RDGRYLGAIEGIRDW 104 (107)
T ss_dssp ETTEEEEEEESSSTH
T ss_pred ECCEEEEEecCeecc
Confidence 999999999999864
No 157
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.18 E-value=2.9e-05 Score=64.65 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCCceEEcChhHHHHHHhCCCcEEEEEecCCChhhHH-----HHHHHHHHhhhc---CCceEEEEeCCCChhHHHhCCCC
Q 029057 81 GHGEYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKI-----MDKHLKALAPKH---IGTKFIKLDAENAPFFVTKLGIK 152 (200)
Q Consensus 81 ~~g~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~-----~~~~l~~la~~~---~~v~f~~i~~~~~~~l~~~~~i~ 152 (200)
|...+..++.++|.+++++.+.++|+||.|--..-.. |...+-+|+.+. .++.|+.||..+...+++++|+.
T Consensus 32 GkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 32 GKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp SS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred CccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 4456889999999999999999989999886433222 223344555443 46999999999999999999999
Q ss_pred CccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 153 TLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 153 ~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
..+++.+|++|+.+... |..+ ++.|-.||..
T Consensus 112 E~~SiyVfkd~~~IEyd-G~~s--------aDtLVeFl~d 142 (383)
T PF01216_consen 112 EEGSIYVFKDGEVIEYD-GERS--------ADTLVEFLLD 142 (383)
T ss_dssp STTEEEEEETTEEEEE--S--S--------HHHHHHHHHH
T ss_pred ccCcEEEEECCcEEEec-CccC--------HHHHHHHHHH
Confidence 99999999999977654 7665 7888888764
No 158
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.18 E-value=3.6e-06 Score=58.58 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=52.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChh-------HHHhCCCCCccEEEEEeCCeEEEEEeccccCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPF-------FVTKLGIKTLPCVIILRKGIAIDRLVGFQDLG 176 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~-------l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g 176 (200)
|+.|..+|||.|..+...|.++. +.|..+|++..+. +.+..|...+|.+ |.+|+.+. |+.++-
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iG---G~ddl~ 79 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVG---GLENVM 79 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEc---CHHHHH
Confidence 45699999999999999887763 4455666665543 2333467899995 66886544 444321
Q ss_pred CCCCCcHHHHHHHHHHcCCc
Q 029057 177 GKDDFTTKTLEVLLVKKGIA 196 (200)
Q Consensus 177 ~~~~~~~e~Le~~L~~~~vi 196 (200)
.+ .....|..+|...|++
T Consensus 80 ~l--~~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 80 AL--HISGSLVPMLKQAGAL 97 (99)
T ss_pred HH--HHcCCHHHHHHHhCcc
Confidence 10 0124678888887765
No 159
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.17 E-value=2.3e-05 Score=70.49 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=62.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcH
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTT 183 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~ 183 (200)
|-.|.++||+.|......+.+++...|++..-.|+....++++.+|+|.++|++++ ||+.+ +.|..+ .
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~--------~ 547 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKT--------I 547 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCC--------H
Confidence 44678999999999999999999999999999999999999999999999999666 88755 346553 4
Q ss_pred HHHHHHH
Q 029057 184 KTLEVLL 190 (200)
Q Consensus 184 e~Le~~L 190 (200)
+++..+|
T Consensus 548 ~~~~~~~ 554 (555)
T TIGR03143 548 EEMLELI 554 (555)
T ss_pred HHHHHhh
Confidence 5555554
No 160
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.15 E-value=2.6e-05 Score=61.23 Aligned_cols=75 Identities=9% Similarity=0.017 Sum_probs=54.9
Q ss_pred CCcEEE-EEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC---------------------------ChhHHHhC
Q 029057 100 SEKAIC-HFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN---------------------------APFFVTKL 149 (200)
Q Consensus 100 ~~~vvV-~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~---------------------------~~~l~~~~ 149 (200)
++.+|+ .||++||+.|....+.|.++..+|. ++.++.|.++. ...+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 344444 6899999999999999999888885 47777776542 12366677
Q ss_pred CCC------CccEEEEE-eCCeEEEEEecccc
Q 029057 150 GIK------TLPCVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 150 ~i~------~~Ptl~~~-~~G~~~~~~~G~~~ 174 (200)
++. .+|+++++ ++|++.....+...
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~ 138 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAE 138 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCC
Confidence 874 58999999 78988776654444
No 161
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.14 E-value=2.4e-05 Score=63.10 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=58.3
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCC---------hhHHHhCCCCCccEEEEE-eC-CeEEEEE
Q 029057 102 KAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENA---------PFFVTKLGIKTLPCVIIL-RK-GIAIDRL 169 (200)
Q Consensus 102 ~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~---------~~l~~~~~i~~~Ptl~~~-~~-G~~~~~~ 169 (200)
.-+++||.+.|+.|..+.|+++.++++|.= +..+.+|-.-. .....+++|..+|++++. .+ |+..---
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~ 224 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLS 224 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEe
Confidence 478899999999999999999999999952 55555553222 225678999999999888 44 3443333
Q ss_pred eccccCCCCCCCcHHHHHHHHH
Q 029057 170 VGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 170 ~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
.|+.+ .++|...+.
T Consensus 225 ~G~iS--------~deL~~Ri~ 238 (248)
T PRK13703 225 YGFIT--------QDDLAKRFL 238 (248)
T ss_pred eccCC--------HHHHHHHHH
Confidence 46665 466655443
No 162
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.12 E-value=3e-05 Score=60.93 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=61.4
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC---------------------------hhHHHhCCCC-
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA---------------------------PFFVTKLGIK- 152 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~---------------------------~~l~~~~~i~- 152 (200)
+++.||++||+.|....+.|.+++++|. ++.++.|.++.. ..+++.|++.
T Consensus 29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~ 108 (203)
T cd03016 29 ILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMID 108 (203)
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCcc
Confidence 5668999999999999999999999885 488888776541 2456778875
Q ss_pred ---C----ccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 153 ---T----LPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 153 ---~----~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+ +|+.+++ ++|++....++....|.. .+.+.+.|..
T Consensus 109 ~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~----~~ell~~l~~ 152 (203)
T cd03016 109 PDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRN----FDEILRVVDA 152 (203)
T ss_pred ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCC----HHHHHHHHHH
Confidence 2 3456677 799988888776554421 3455555543
No 163
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.10 E-value=1e-05 Score=63.10 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=51.9
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEe-----------------------------------------
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLD----------------------------------------- 138 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~----------------------------------------- 138 (200)
++..|+.|+.++||+|+.+.+.+.+. -.++.+..+-
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPN---ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhc---cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 34588899999999999999998761 1223222221
Q ss_pred ----CCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 139 ----AENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 139 ----~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
++.+..++.++||.++|+++ |.+|+. +.|+.+ .+.|+.+|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~--------~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPP--------AAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCC--------HHHHHhhC
Confidence 11123477889999999997 888976 456654 46676654
No 164
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.09 E-value=4.2e-05 Score=68.23 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=59.4
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEecccc
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
-+-.|++++||+|......+.+++...|++.+-.||....|++..+|++.++|++++ ||+.. +.|..+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~ 186 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMT 186 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCC
Confidence 477899999999999999999999999999999999999999999999999999755 77643 345554
No 165
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.07 E-value=1.3e-05 Score=61.91 Aligned_cols=41 Identities=5% Similarity=-0.025 Sum_probs=34.7
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAE 140 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~ 140 (200)
.++.+||.|||+||+.|.. .+.|.++.++|. ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4566999999999999975 789999999996 4888888774
No 166
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.07 E-value=0.00012 Score=52.41 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=60.8
Q ss_pred CCCcEEEEEecC----CChhhHHHH--HHHHHHhhhcCCceEEEEeCCCC--hhHHHhCCCCCccEEEEE--eC--CeEE
Q 029057 99 GSEKAICHFYHK----EFYRCKIMD--KHLKALAPKHIGTKFIKLDAENA--PFFVTKLGIKTLPCVIIL--RK--GIAI 166 (200)
Q Consensus 99 ~~~~vvV~Fy~~----~c~~C~~~~--~~l~~la~~~~~v~f~~i~~~~~--~~l~~~~~i~~~Ptl~~~--~~--G~~~ 166 (200)
+.+.++|+||++ ||..|+... |.+.++-.. +..+...|++.. ..++..+++.++|++.++ ++ ++++
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 344499999999 888887654 333343332 367778888654 568899999999999988 23 4568
Q ss_pred EEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 167 DRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 167 ~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
.++.|..+ .++|...|..
T Consensus 94 ~~i~G~~~--------~~~ll~~L~~ 111 (116)
T cd02991 94 GRLEGLIQ--------PEDLINRLTF 111 (116)
T ss_pred EEEeCCCC--------HHHHHHHHHH
Confidence 89999886 6777777764
No 167
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.07 E-value=2.5e-05 Score=49.87 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=43.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhH----HHhCCCCCccEEEEEeCCeEEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFF----VTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l----~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
|+.|+++||+.|+.+.+.|.+.. +.|..+|+..++.. ....+...+|++ |.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 56799999999999999998775 67778888877543 334577789986 45886655
No 168
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.04 E-value=5.9e-05 Score=59.83 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=56.9
Q ss_pred CCc-EEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC---------------------------hhHHHhC
Q 029057 100 SEK-AICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA---------------------------PFFVTKL 149 (200)
Q Consensus 100 ~~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~---------------------------~~l~~~~ 149 (200)
++. |++.|+++||+.|....+.|.+++.+|. ++.++.|.++.. ..+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 334 5679999999999999999999999985 578887766542 2356677
Q ss_pred CCC-------CccEEEEE-eCCeEEEEEecccc
Q 029057 150 GIK-------TLPCVIIL-RKGIAIDRLVGFQD 174 (200)
Q Consensus 150 ~i~-------~~Ptl~~~-~~G~~~~~~~G~~~ 174 (200)
|+. .+|+++++ ++|++...+.....
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~ 140 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQE 140 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCC
Confidence 763 57999999 78998877654433
No 169
>PRK13189 peroxiredoxin; Provisional
Probab=97.98 E-value=8e-05 Score=59.33 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=55.2
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC---------------------------hhHHHhCCCC-
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA---------------------------PFFVTKLGIK- 152 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~---------------------------~~l~~~~~i~- 152 (200)
+|+.||++||+.|....+.|.+++.+|. ++.++.|.++.. ..+++.||+.
T Consensus 39 vL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~ 118 (222)
T PRK13189 39 VLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMIS 118 (222)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCc
Confidence 5567889999999999999999998885 477777765431 2356677764
Q ss_pred ------CccEEEEE-eCCeEEEEEeccccCC
Q 029057 153 ------TLPCVIIL-RKGIAIDRLVGFQDLG 176 (200)
Q Consensus 153 ------~~Ptl~~~-~~G~~~~~~~G~~~~g 176 (200)
.+|+.+++ ++|.+.+..++....|
T Consensus 119 ~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~g 149 (222)
T PRK13189 119 PGKGTNTVRAVFIIDPKGIIRAILYYPQEVG 149 (222)
T ss_pred cccCCCceeEEEEECCCCeEEEEEecCCCCC
Confidence 46888888 7999888877655433
No 170
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.97 E-value=0.00016 Score=48.33 Aligned_cols=71 Identities=18% Similarity=0.395 Sum_probs=52.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHH---HhCCCCCccEEEEEeCCeEEEEEeccccCCCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFV---TKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDD 180 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~---~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~ 180 (200)
|+.|..+||+.|......|.+ .++.|-.+|++..+... ...|...+|++++ +|. .+.||.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~------- 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFR------- 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCC-------
Confidence 567899999999999988865 36888899998876532 3457789999855 553 355776
Q ss_pred CcHHHHHHHHHHc
Q 029057 181 FTTKTLEVLLVKK 193 (200)
Q Consensus 181 ~~~e~Le~~L~~~ 193 (200)
.+.|.++...+
T Consensus 66 --~~~l~~~~~~~ 76 (81)
T PRK10329 66 --PDMINRLHPAP 76 (81)
T ss_pred --HHHHHHHHHhh
Confidence 47777776554
No 171
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.96 E-value=5.6e-05 Score=50.18 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=42.8
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC---hhHHHhCCCCCccEEEEEeCCeE
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA---PFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~---~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
-|+.|+.+||+.|+.....|.+. ++.|-.+|++.. ..+....+...+|.++ .+|+.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 67 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKL 67 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEE
Confidence 46789999999999999999754 566777787766 3455556889999974 48865
No 172
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.92 E-value=9.1e-05 Score=48.19 Aligned_cols=61 Identities=20% Similarity=0.467 Sum_probs=45.4
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhC---CCCCccEEEEEeCCeEEEEEecccc
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKL---GIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~---~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
..|..++|+.|+.....|.+. ++.|-.+|+++.+.....+ |...+|++++ +|. ..+.|+.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~ 65 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRP 65 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCH
Confidence 568889999999999999763 6778888988887554444 8889999644 564 24567653
No 173
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.91 E-value=0.00025 Score=57.81 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=57.4
Q ss_pred CCCcEEEEEe-cCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC----------------------------ChhHHH
Q 029057 99 GSEKAICHFY-HKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN----------------------------APFFVT 147 (200)
Q Consensus 99 ~~~~vvV~Fy-~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~----------------------------~~~l~~ 147 (200)
..+.+|+.|| +.||+.|....+.|.++.++|. ++.++.|.++. ...+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 3445777777 8999999999999999988885 46777666543 124677
Q ss_pred hCCCC-----CccEEEEE-eCCeEEEEEeccccC
Q 029057 148 KLGIK-----TLPCVIIL-RKGIAIDRLVGFQDL 175 (200)
Q Consensus 148 ~~~i~-----~~Ptl~~~-~~G~~~~~~~G~~~~ 175 (200)
.||+. .+|+.+++ ++|++....+.-...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~ 210 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGL 210 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCC
Confidence 78875 58999999 699988877644443
No 174
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.89 E-value=0.00015 Score=57.52 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCc-EEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC---------------------------hhHHHhC
Q 029057 100 SEK-AICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA---------------------------PFFVTKL 149 (200)
Q Consensus 100 ~~~-vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~---------------------------~~l~~~~ 149 (200)
++. ||+.|+++||+.|....+.|.+++.+|. ++.++.|.++.. ..+++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 344 4458899999999999999999999985 577887776532 2355667
Q ss_pred CCC-------CccEEEEE-eCCeEEEEEeccccCC
Q 029057 150 GIK-------TLPCVIIL-RKGIAIDRLVGFQDLG 176 (200)
Q Consensus 150 ~i~-------~~Ptl~~~-~~G~~~~~~~G~~~~g 176 (200)
|+. .+|+.+++ ++|++....++-...|
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~g 147 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIG 147 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCC
Confidence 763 37888888 7999988888776655
No 175
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.87 E-value=0.00018 Score=64.15 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=59.2
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEecccc
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
-+-.|+++.||+|......+.+++..+|++.+-.+|....|++..+|++.++|++++ ||+.. +.|..+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~ 187 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMD 187 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCC
Confidence 467899999999999999999999999999999999999999999999999999765 77643 345544
No 176
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.85 E-value=0.00035 Score=46.64 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=57.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCC--eEEEEEeccccCCCCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG--IAIDRLVGFQDLGGKDDF 181 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G--~~~~~~~G~~~~g~~~~~ 181 (200)
|+.|..+.|+-|..+...+..+....+ +.+-.||++.++.+..+|+. .+|.+.+ +| ......... -.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~------~~~ 71 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHI--DGIRQFKEQEELK------WRF 71 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEE--TT-GGGCTSEEEE------SSB
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEE--cCcccccccceeC------CCC
Confidence 678999999999999999999877765 88999999999999999996 7999655 44 100000000 145
Q ss_pred cHHHHHHHHH
Q 029057 182 TTKTLEVLLV 191 (200)
Q Consensus 182 ~~e~Le~~L~ 191 (200)
+.+.|.++|+
T Consensus 72 d~~~L~~~L~ 81 (81)
T PF05768_consen 72 DEEQLRAWLE 81 (81)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 6889998874
No 177
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.84 E-value=0.00024 Score=55.59 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=59.0
Q ss_pred CCCcEEEEEec-CCChhhHHHHHHHHHHhhhcC--CceEEEEeCCCC----------------------------hhHHH
Q 029057 99 GSEKAICHFYH-KEFYRCKIMDKHLKALAPKHI--GTKFIKLDAENA----------------------------PFFVT 147 (200)
Q Consensus 99 ~~~~vvV~Fy~-~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~~----------------------------~~l~~ 147 (200)
.++.++|.||. .||+.|....+.|.+++++|. ++.++.|.++.. ..+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 34568889995 789999998899999999887 478887776532 23567
Q ss_pred hCCCC------CccEEEEE-eCCeEEEEEeccccCC
Q 029057 148 KLGIK------TLPCVIIL-RKGIAIDRLVGFQDLG 176 (200)
Q Consensus 148 ~~~i~------~~Ptl~~~-~~G~~~~~~~G~~~~g 176 (200)
.|++. .+|+.+++ ++|+++...++....|
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~ 150 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVG 150 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCC
Confidence 77875 36888888 7899988888766544
No 178
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.83 E-value=0.00014 Score=47.34 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=41.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHH----HhCCCC-CccEEEEEeCCeEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFV----TKLGIK-TLPCVIILRKGIAI 166 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~----~~~~i~-~~Ptl~~~~~G~~~ 166 (200)
|+.|+.+||+.|..+...|.+. ++.|-.++++..+... ...+.. .+|++ |.+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 5679999999999999988774 5677778888765443 335666 89985 5588654
No 179
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.83 E-value=0.00018 Score=46.87 Aligned_cols=57 Identities=11% Similarity=0.275 Sum_probs=43.8
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChh----HHHhCCCCCccEEEEEeCCeEEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPF----FVTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~----l~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
|+.|+.+||+.|+.+...|.+. ++.|..+|+...+. +.+..+-..+|++ |.||+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 5678999999999999999874 57777888887754 4555577889996 55887544
No 180
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.82 E-value=7.5e-05 Score=49.33 Aligned_cols=56 Identities=14% Similarity=0.323 Sum_probs=41.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHH----HhCCCCCccEEEEEeCCeEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFV----TKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~----~~~~i~~~Ptl~~~~~G~~~ 166 (200)
|+.|+.+|||.|......|.+. ++.|-.+|++..+... ...+..++|++ |.+|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 4578999999999999999865 4566677777775443 33477899996 5578643
No 181
>PRK10824 glutaredoxin-4; Provisional
Probab=97.73 E-value=8.6e-05 Score=53.00 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=54.8
Q ss_pred HHHHHHhCCCcEEEEEec----CCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHH----HhCCCCCccEEEEEeCC
Q 029057 92 DFLAEVTGSEKAICHFYH----KEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFV----TKLGIKTLPCVIILRKG 163 (200)
Q Consensus 92 ~~~~~v~~~~~vvV~Fy~----~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~----~~~~i~~~Ptl~~~~~G 163 (200)
.+.+.+.++.+|||+--. ||||.|+.....|..+. +.|..+|++..+.+. +.-|...+|. +|.||
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI~G 78 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQ--LWVDG 78 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCe--EEECC
Confidence 344444556677664333 69999999999998874 444456666665433 3346667777 66689
Q ss_pred eEEEEEeccccCCCCCCCcHHHHHHHHHHcCCc
Q 029057 164 IAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGIA 196 (200)
Q Consensus 164 ~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~vi 196 (200)
+.++..--+..+ +....|...|...|+.
T Consensus 79 ~~IGG~ddl~~l-----~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 79 ELVGGCDIVIEM-----YQRGELQQLIKETAAK 106 (115)
T ss_pred EEEcChHHHHHH-----HHCCCHHHHHHHHHhh
Confidence 866532211111 1123466666666554
No 182
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.73 E-value=0.00019 Score=58.32 Aligned_cols=80 Identities=14% Similarity=0.279 Sum_probs=55.5
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeC----------------C--------------------C----
Q 029057 102 KAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDA----------------E--------------------N---- 141 (200)
Q Consensus 102 ~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~----------------~--------------------~---- 141 (200)
.+|+.|..+.||+|+.+.+.+..+.+. .++.+..+.. . .
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~~~ 197 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPASI 197 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccccC
Confidence 478899999999999999998877654 2343332211 0 0
Q ss_pred ----------ChhHHHhCCCCCccEEEEEe-CCeEEEEEeccccCCCCCCCcHHHHHHHHH
Q 029057 142 ----------APFFVTKLGIKTLPCVIILR-KGIAIDRLVGFQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 142 ----------~~~l~~~~~i~~~Ptl~~~~-~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~ 191 (200)
+..+..++|++++|++++-. +| .+..+.|+.+ .+.|+++|.
T Consensus 198 ~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~--------~~~L~~~l~ 249 (251)
T PRK11657 198 PAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPD--------PAQLAEIMG 249 (251)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCC--------HHHHHHHhC
Confidence 11256779999999998874 35 3456678876 678888774
No 183
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.72 E-value=0.00046 Score=48.29 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=62.8
Q ss_pred Ec-ChhHHHHHHhC--CCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCCh----hHHHhCCCC-CccEE
Q 029057 87 EI-GEGDFLAEVTG--SEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENAP----FFVTKLGIK-TLPCV 157 (200)
Q Consensus 87 ~i-~~~~~~~~v~~--~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~----~l~~~~~i~-~~Ptl 157 (200)
.| +.+++.+.+.. ..+++|+=.+++||-+......|++.....++ +.++.+++-++. .++.+|||+ -=|-+
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 44 67888888776 44577767888899999999999999999887 999999998774 467889997 48999
Q ss_pred EEEeCCeEEEEEec
Q 029057 158 IILRKGIAIDRLVG 171 (200)
Q Consensus 158 ~~~~~G~~~~~~~G 171 (200)
++++||+.+..-..
T Consensus 83 ili~~g~~v~~aSH 96 (105)
T PF11009_consen 83 ILIKNGKVVWHASH 96 (105)
T ss_dssp EEEETTEEEEEEEG
T ss_pred EEEECCEEEEECcc
Confidence 99999999876543
No 184
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.72 E-value=0.0014 Score=47.89 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=69.8
Q ss_pred ceEEcChhHHHHHHhCCCc-EEEEEecCC---C-hhh-HHHHHHHHHHhhhcCC--ceEEEEeCCCChhHHHhCCCC--C
Q 029057 84 EYREIGEGDFLAEVTGSEK-AICHFYHKE---F-YRC-KIMDKHLKALAPKHIG--TKFIKLDAENAPFFVTKLGIK--T 153 (200)
Q Consensus 84 ~v~~i~~~~~~~~v~~~~~-vvV~Fy~~~---c-~~C-~~~~~~l~~la~~~~~--v~f~~i~~~~~~~l~~~~~i~--~ 153 (200)
.+.+++..+.....-.+.. .+|-| -|. | +.+ ..+...+.++|++|.+ +.|+.+|.+..+.+.+.||+. +
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 4677866665544333334 44545 342 2 223 4567889999999986 799999999998899999995 4
Q ss_pred ccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 154 LPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 154 ~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
+|+++++...+. ++.=+. ..|+.+.+.+|+...
T Consensus 82 ~P~v~i~~~~~~--KY~~~~-----~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 82 YPAMVAINFRKM--KFATLK-----GSFSEDGINEFLREL 114 (130)
T ss_pred CCEEEEEecccC--cccccc-----CccCHHHHHHHHHHH
Confidence 999999955432 221122 257789999999865
No 185
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.65 E-value=0.00042 Score=44.91 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.8
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChh---HHHhCCCCCccEEEEEeCCeEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPF---FVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~---l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
|+.|..+||+.|......|.+. ++.|..+|++..+. +....+...+|.+ |.+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 5679999999999999888864 56677777776642 3344588899996 5678653
No 186
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.62 E-value=0.00084 Score=46.43 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=45.5
Q ss_pred HHHHhCCCcEEEEEe----cCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChh----HHHhCCCCCccEEEEEeCCeE
Q 029057 94 LAEVTGSEKAICHFY----HKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPF----FVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 94 ~~~v~~~~~vvV~Fy----~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~----l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
...+.++.+|+|+-. .||||.|......|.+. ++.|..+|+...+. +.+..|...+|.+ |.+|+.
T Consensus 5 v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~~ 77 (97)
T TIGR00365 5 IKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGEF 77 (97)
T ss_pred HHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 344455667766443 28999999999998775 45677788877654 3344577789985 568865
Q ss_pred E
Q 029057 166 I 166 (200)
Q Consensus 166 ~ 166 (200)
+
T Consensus 78 i 78 (97)
T TIGR00365 78 V 78 (97)
T ss_pred E
Confidence 4
No 187
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.52 E-value=0.0017 Score=48.37 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=31.6
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHhhhc--CC-ceEEEEeC
Q 029057 101 EKAICHFYHKEFYRCKIMDKHLKALAPKH--IG-TKFIKLDA 139 (200)
Q Consensus 101 ~~vvV~Fy~~~c~~C~~~~~~l~~la~~~--~~-v~f~~i~~ 139 (200)
..+|+.|+...||+|+.+.+.+.++.+++ ++ +.|+...+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 33789999999999999999999998888 44 77776654
No 188
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.50 E-value=0.002 Score=45.66 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=71.1
Q ss_pred eEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhh---cCC-ceEEEEeCCCChhHHHhCCCCC--ccEEE
Q 029057 85 YREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPK---HIG-TKFIKLDAENAPFFVTKLGIKT--LPCVI 158 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~---~~~-v~f~~i~~~~~~~l~~~~~i~~--~Ptl~ 158 (200)
|+++|.+++......+-+..+.|+ .-..-..+.+.+.++|++ |.+ +.|+.+|.+........||+.. +|.+.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 346677777655555555545555 233447788899999999 987 9999999999877899999997 99998
Q ss_pred EEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 159 ILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 159 ~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
+..... ...+.-+. +.++.+.+..|+...
T Consensus 79 i~~~~~-~~Ky~~~~-----~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 79 IDSFRH-MYLFPDFE-----DVYVPGKLKQFVLDL 107 (111)
T ss_pred EEcchh-cCcCCCCc-----cccCHHHHHHHHHHH
Confidence 874432 11221121 357789999988753
No 189
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0005 Score=48.19 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=41.4
Q ss_pred HHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-hH----HHhCCCCCccEEEEEeCCeEEE
Q 029057 96 EVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-FF----VTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 96 ~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-~l----~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
.+....+|| .|..+||+.|..+...|..+. ...+++.+|-..+. .+ .+--+-+.+|. +|-+|+.++
T Consensus 9 ~~i~~~~VV-ifSKs~C~~c~~~k~ll~~~~---v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~--vFI~Gk~iG 79 (104)
T KOG1752|consen 9 KMISENPVV-IFSKSSCPYCHRAKELLSDLG---VNPKVVELDEDEDGSEIQKALKKLTGQRTVPN--VFIGGKFIG 79 (104)
T ss_pred HHhhcCCEE-EEECCcCchHHHHHHHHHhCC---CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCE--EEECCEEEc
Confidence 334455554 599999999999888887722 12455666555442 22 22234568998 555888664
No 190
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.48 E-value=0.0011 Score=50.30 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEE
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFI 135 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~ 135 (200)
.+...|+.|+...||+|+.+.+.+..+..++++ +.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 455688999999999999999999999888875 5554
No 191
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0015 Score=53.84 Aligned_cols=109 Identities=14% Similarity=0.229 Sum_probs=78.9
Q ss_pred CCceEEcChhHHHHHHhCCCc---EEEEEecC----CChhhHHHHHHHHHHhhhcC----C-----ceEEEEeCCCChhH
Q 029057 82 HGEYREIGEGDFLAEVTGSEK---AICHFYHK----EFYRCKIMDKHLKALAPKHI----G-----TKFIKLDAENAPFF 145 (200)
Q Consensus 82 ~g~v~~i~~~~~~~~v~~~~~---vvV~Fy~~----~c~~C~~~~~~l~~la~~~~----~-----v~f~~i~~~~~~~l 145 (200)
...+..++++.|...+..... ++|.|.|. .|.-|+.....+.-+|..+. + +-|+.||.++.|+.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 345889999999998885544 88888874 69999999999988887653 1 56999999999999
Q ss_pred HHhCCCCCccEEEEEe--CCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 146 VTKLGIKTLPCVIILR--KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 146 ~~~~~i~~~Ptl~~~~--~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
-+.+++.++|++.+|. .|+... .+-.+.+. -.+..|.+.++..+.
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~--s~~~d~~~-~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKR--SDQMDQQD-LGFEAEQIAQFVADR 165 (331)
T ss_pred HHHhcccCCCeEEEeCCCcccccc--Cccchhhh-cchhHHHHHHHHHHh
Confidence 9999999999999993 344331 12111111 122366666666543
No 192
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.43 E-value=0.0026 Score=43.39 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=62.3
Q ss_pred Ec-ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC-CceEEEEeCCCChhHHHhCCCCCccEEEEEeCC-
Q 029057 87 EI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI-GTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG- 163 (200)
Q Consensus 87 ~i-~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~-~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G- 163 (200)
++ +.+++...+.....+||-|+.++|. .....+.++|..+. ++.|+.+. .+.+..++++. .|++++|+.+
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~ 75 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFE 75 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcc
Confidence 45 4455555566677788899999887 45678889999886 48887665 45667778775 5999999765
Q ss_pred eEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 164 IAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 164 ~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
.....+.| .++.+.|.+|+..
T Consensus 76 ~~~~~y~g--------~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDG--------EFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCC--------CCCHHHHHHHHHh
Confidence 22222222 2346899999865
No 193
>PRK10638 glutaredoxin 3; Provisional
Probab=97.33 E-value=0.0016 Score=43.47 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=41.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChh----HHHhCCCCCccEEEEEeCCeEEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPF----FVTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~----l~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
|+.|..+||+.|+.....|.+. ++.|..+|++..+. +.+..+...+|++ |.+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 4678889999999999988865 46667778876653 3445577889986 44786543
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0019 Score=43.07 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=40.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-----hHHHhC-CCCCccEEEEEeCCeE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-----FFVTKL-GIKTLPCVIILRKGIA 165 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-----~l~~~~-~i~~~Ptl~~~~~G~~ 165 (200)
++.|..+|||.|.+....|.+. ++.|..++++..+ +..... |.+.+|.+++ +|+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ 63 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH 63 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence 5678999999999999888843 4666677776654 334444 7899999544 7763
No 195
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.30 E-value=0.0024 Score=43.40 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=42.1
Q ss_pred CCCcEEEEEec----CCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhH----HHhCCCCCccEEEEEeCCeEE
Q 029057 99 GSEKAICHFYH----KEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFF----VTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 99 ~~~~vvV~Fy~----~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l----~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
++.+|+|+-.. |||+.|+.....|.... +.|-.+|+...+.+ .+..+-..+|.+ |.+|+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 34556554332 79999999999988764 56777777766543 344577889996 5588643
No 196
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.30 E-value=0.0011 Score=44.54 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=41.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeC--CCC------------------------------hhHHHhCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDA--ENA------------------------------PFFVTKLG 150 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~--~~~------------------------------~~l~~~~~ 150 (200)
|+.|+.+.||.|..+.+.+.++...+++ +.|....+ ... ......+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999755543 55554432 221 12456789
Q ss_pred CCCccEEEEE
Q 029057 151 IKTLPCVIIL 160 (200)
Q Consensus 151 i~~~Ptl~~~ 160 (200)
+.++||+++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999998874
No 197
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.26 E-value=0.0034 Score=44.48 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=64.6
Q ss_pred cChhHHHHHHhCCCcEEEEE---ecCCChhhHHHHHHHHHHhhhcC-C-ceEEEEeCCCChhHHHhCCCCC----ccEEE
Q 029057 88 IGEGDFLAEVTGSEKAICHF---YHKEFYRCKIMDKHLKALAPKHI-G-TKFIKLDAENAPFFVTKLGIKT----LPCVI 158 (200)
Q Consensus 88 i~~~~~~~~v~~~~~vvV~F---y~~~c~~C~~~~~~l~~la~~~~-~-v~f~~i~~~~~~~l~~~~~i~~----~Ptl~ 158 (200)
+|.++.... ...+.+++.+ |+..-..-..+.+.+.++|++|+ + +.|+.+|.++.....+.||+.. +|++.
T Consensus 4 ~~~en~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~ 82 (111)
T cd03073 4 RTKDNRAQF-TKKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVA 82 (111)
T ss_pred eccchHHHh-ccCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEE
Confidence 444555444 2233333332 23334455678899999999999 5 9999999998877888999984 99999
Q ss_pred EEeCCeEEEEEeccccCCCCCCC-cHHHHHHHHHH
Q 029057 159 ILRKGIAIDRLVGFQDLGGKDDF-TTKTLEVLLVK 192 (200)
Q Consensus 159 ~~~~G~~~~~~~G~~~~g~~~~~-~~e~Le~~L~~ 192 (200)
++.... .++. +. ..+ +.+.|.+++..
T Consensus 83 i~~~~~--~KY~-~~-----~~~~t~e~i~~F~~~ 109 (111)
T cd03073 83 IRTAKG--KKYV-ME-----EEFSDVDALEEFLED 109 (111)
T ss_pred EEeCCC--CccC-CC-----cccCCHHHHHHHHHH
Confidence 985322 2332 22 245 78999998875
No 198
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.19 E-value=0.0041 Score=49.68 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=74.5
Q ss_pred CCceEEcChhH---HHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCCC-h-------------
Q 029057 82 HGEYREIGEGD---FLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAENA-P------------- 143 (200)
Q Consensus 82 ~g~v~~i~~~~---~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~-~------------- 143 (200)
...+..++++. +.+-...+.++|+.|.+-+||+-+.-.+.+++++++|.+ +.|+-|.+.+. |
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i 160 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEI 160 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceee
Confidence 34577776554 566666777899999999999999999999999999998 67877755331 0
Q ss_pred ----h----------------------------HHHhCCCCCccE-EEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 144 ----F----------------------------FVTKLGIKTLPC-VIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 144 ----~----------------------------l~~~~~i~~~Pt-l~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
. ....|+ .+|. +.++++|+++. .|-. |+..|..++|++||
T Consensus 161 ~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y--~Gg~---GP~~y~~~e~r~~L 233 (237)
T PF00837_consen 161 PQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVY--KGGP---GPFGYSPEELREWL 233 (237)
T ss_pred cCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEE--eCCC---CCCcCCHHHHHHHH
Confidence 0 122233 4663 55669998654 2432 34578899999999
Q ss_pred HHc
Q 029057 191 VKK 193 (200)
Q Consensus 191 ~~~ 193 (200)
.++
T Consensus 234 ~~~ 236 (237)
T PF00837_consen 234 EKY 236 (237)
T ss_pred Hhc
Confidence 876
No 199
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.08 E-value=0.0016 Score=56.65 Aligned_cols=80 Identities=11% Similarity=0.265 Sum_probs=53.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChh---HHHh---------CCCCCccEEEEEeCCeEEEEEec
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPF---FVTK---------LGIKTLPCVIILRKGIAIDRLVG 171 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~---l~~~---------~~i~~~Ptl~~~~~G~~~~~~~G 171 (200)
|+.|..+|||+|......|.+. ++.|-.+|+++.+. +..+ .|...+|++++ +|+. +.|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~---igG 73 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH---IGG 73 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE---EeC
Confidence 5679999999999999888775 57888889887763 2222 36788999755 7764 446
Q ss_pred cccCCCCCCCcHHHHHHHHHHcCCcc
Q 029057 172 FQDLGGKDDFTTKTLEVLLVKKGIAS 197 (200)
Q Consensus 172 ~~~~g~~~~~~~e~Le~~L~~~~vi~ 197 (200)
+.++.. ....|...|.-.++..
T Consensus 74 f~~l~~----~~g~l~~~~~~~~~~~ 95 (410)
T PRK12759 74 YDNLMA----RAGEVIARVKGSSLTT 95 (410)
T ss_pred chHHHH----HhCCHHHHhcCCcccc
Confidence 654311 2344555555555543
No 200
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.98 E-value=0.0019 Score=47.47 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=31.3
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEe
Q 029057 101 EKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLD 138 (200)
Q Consensus 101 ~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~ 138 (200)
+..|+.|+.++||+|+.+.|.+.++..+++++++....
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 34788999999999999999999988888776555443
No 201
>PTZ00062 glutaredoxin; Provisional
Probab=96.61 E-value=0.015 Score=45.70 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=45.3
Q ss_pred HHHHHHhCCCcEEEEEe----cCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHH----HhCCCCCccEEEEEeCC
Q 029057 92 DFLAEVTGSEKAICHFY----HKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFV----TKLGIKTLPCVIILRKG 163 (200)
Q Consensus 92 ~~~~~v~~~~~vvV~Fy----~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~----~~~~i~~~Ptl~~~~~G 163 (200)
.+...+.++.+|+|+-- .|||+.|+.+...|.+. ++.|..+|+.+.+.+. +..+...+|. +|.||
T Consensus 104 ~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPq--VfI~G 176 (204)
T PTZ00062 104 EKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQ--LYVNG 176 (204)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCe--EEECC
Confidence 44445556667765332 27999999999888865 4677788888776543 3345667787 55588
Q ss_pred eEE
Q 029057 164 IAI 166 (200)
Q Consensus 164 ~~~ 166 (200)
+.+
T Consensus 177 ~~I 179 (204)
T PTZ00062 177 ELI 179 (204)
T ss_pred EEE
Confidence 754
No 202
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.58 E-value=0.02 Score=51.74 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=60.5
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEe-CCeEE-EEEecccc
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILR-KGIAI-DRLVGFQD 174 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~-~G~~~-~~~~G~~~ 174 (200)
.++.|+.+.|..|..+...+++++.--+.+++...|..+...+.++|++...|++.++. +|+.. -+|.|...
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~ 442 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPS 442 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCc
Confidence 67788888999999999999999987777888888888888899999999999999994 66533 56677654
No 203
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.52 E-value=0.11 Score=37.25 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=66.0
Q ss_pred eEEcChhHHHHHHhCCCcEEEEEec--CCChhhHHHHHHHHHHh-h---hcCCceEEEEeCCC-----ChhHHHhCCC--
Q 029057 85 YREIGEGDFLAEVTGSEKAICHFYH--KEFYRCKIMDKHLKALA-P---KHIGTKFIKLDAEN-----APFFVTKLGI-- 151 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~vvV~Fy~--~~c~~C~~~~~~l~~la-~---~~~~v~f~~i~~~~-----~~~l~~~~~i-- 151 (200)
...+++-+|...|.+...++|.|=. |+-.. ...+.++| + .-+++-++.|-+.+ +.+|+++|++
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeK----hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAYPYGEK----HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS--CHH----HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred eeeccceehhheeccCceEEEEEeccCCCcch----HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 4577888999999998889999943 23332 33455555 3 33457777776643 5789999999
Q ss_pred CCccEEEEEeCC-eEEEEEeccccCCCCCCCcHHHHHHHHHHc-CCcc
Q 029057 152 KTLPCVIILRKG-IAIDRLVGFQDLGGKDDFTTKTLEVLLVKK-GIAS 197 (200)
Q Consensus 152 ~~~Ptl~~~~~G-~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~-~vi~ 197 (200)
..+|.+++|.+| ...-++ . ....|+.+.|.+|+.++ |+--
T Consensus 82 e~fPv~~LF~~~~~~pv~~---p---~~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRY---P---FDGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-------TCS-S-HHHHHHHHHHTSS--T
T ss_pred ccCCEEEEecCCCCCCccC---C---ccCCccHHHHHHHHHhCCCeee
Confidence 679999999743 333333 1 11367899999999998 5543
No 204
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=95.76 E-value=0.14 Score=39.16 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=27.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFI 135 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~ 135 (200)
|..|+..-||.|-...+.+.++.+.++++.+-
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~ 33 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIE 33 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 67899999999999999999999999664443
No 205
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.57 E-value=0.11 Score=39.34 Aligned_cols=67 Identities=22% Similarity=0.220 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCe-EEEEEeccccCCCCCCCcHHHHHHHHHHcCC
Q 029057 118 MDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGI-AIDRLVGFQDLGGKDDFTTKTLEVLLVKKGI 195 (200)
Q Consensus 118 ~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~-~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~v 195 (200)
....+.++|+.+.+ +.|+.+. .+.+++.+++.. |++++|+.+. ....+.|- .++.+.|..|+..+..
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~-------~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGD-------KFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSS-------TTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccc-------cCCHHHHHHHHHHhcc
Confidence 45678899999985 8998876 666899999988 9999998743 23444453 3458999999987753
No 206
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.30 E-value=0.14 Score=38.23 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=40.2
Q ss_pred EEEEecC------CChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhH----HHhCCC----CCccEEEEEeCCeEEE
Q 029057 104 ICHFYHK------EFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFF----VTKLGI----KTLPCVIILRKGIAID 167 (200)
Q Consensus 104 vV~Fy~~------~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l----~~~~~i----~~~Ptl~~~~~G~~~~ 167 (200)
||.|+++ +|+.|..+...|+.+ ++.|-.+|++.++.+ .+.++- ..+|. +|.+|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPq--VFI~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPR--VFVDGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCE--EEECCEEEe
Confidence 3556666 899999999999876 477888999877543 333443 57888 455786554
No 207
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.31 Score=36.69 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=58.8
Q ss_pred CCCcEEEEEe-cCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCC---------------------CChhHHHhCCCCC-
Q 029057 99 GSEKAICHFY-HKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAE---------------------NAPFFVTKLGIKT- 153 (200)
Q Consensus 99 ~~~~vvV~Fy-~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~---------------------~~~~l~~~~~i~~- 153 (200)
.+..||++|| ..++|.|-...-.|+....+|.+ +.++-|..+ ....+++.||+..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 4457888888 46889998888888887777653 666666543 3445778888743
Q ss_pred -----------ccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 154 -----------LPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 154 -----------~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
.++.+++ ++|.+...+..+...+. .+.+...|.+
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h-----~~~vl~~l~~ 154 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGH-----ADEVLAALKK 154 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCccc-----HHHHHHHHHH
Confidence 4555566 78988887755554332 3555555554
No 208
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.20 E-value=0.098 Score=40.06 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=23.6
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCC-ceEE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIG-TKFI 135 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~ 135 (200)
+|..|.|+.|-.+.|.|.++..+|++ +.|-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~ 32 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFR 32 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEE
Confidence 69999999999999999999999986 4443
No 209
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.18 E-value=0.39 Score=33.13 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=61.0
Q ss_pred eEEc-ChhHHHHHHh-CCCcEEEEEecCCChhhHHHHHHHHHHhhhc-CCceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 85 YREI-GEGDFLAEVT-GSEKAICHFYHKEFYRCKIMDKHLKALAPKH-IGTKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 85 v~~i-~~~~~~~~v~-~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~-~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
+..| +.+++...+. ....+||-|+.+--. .....+.++|..+ .+..|+. ...+.+...+++. .|++++|+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~---~~~~~~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFA---TFDSKVAKKLGLK-MNEVDFYE 74 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEE---ECcHHHHHHcCCC-CCcEEEeC
Confidence 4566 6677877776 666666666665444 3455788888888 4588853 3344567778774 79999996
Q ss_pred C-CeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 162 K-GIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 162 ~-G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
+ ......+. +| .++.+.|..|+..+
T Consensus 75 ~~~e~~~~y~-----~g--~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEEPVTIP-----DK--PYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCcccC-----CC--CCCHHHHHHHHHHh
Confidence 6 32222221 22 34578999998764
No 210
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.77 E-value=0.036 Score=39.14 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=52.1
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh----hHHHhCCCCCccEEEEE-eCCeEEEEEeccccCCCCC
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP----FFVTKLGIKTLPCVIIL-RKGIAIDRLVGFQDLGGKD 179 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~----~l~~~~~i~~~Ptl~~~-~~G~~~~~~~G~~~~g~~~ 179 (200)
..|+.++|+.|+.....|++. ++.|-.+|+...+ .+..-++..+.|.--++ +.|. ..+-.|... ..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~-~~~~l~~~~--~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGK-SYRELGLKD--KLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCc-hHHhCCccc--ccc
Confidence 468899999999998888764 5667777776553 22232333445655455 4454 233334332 123
Q ss_pred CCcHHHHHHHHHHcCCccc
Q 029057 180 DFTTKTLEVLLVKKGIASA 198 (200)
Q Consensus 180 ~~~~e~Le~~L~~~~vi~~ 198 (200)
.++.+.+..+|.++..|-.
T Consensus 74 ~~s~~e~~~~l~~~p~Lik 92 (111)
T cd03036 74 SLSEEEALELLSSDGMLIK 92 (111)
T ss_pred cCCHHHHHHHHHhCcCeee
Confidence 5567778888888766543
No 211
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.75 E-value=0.21 Score=34.61 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=58.1
Q ss_pred Ec-ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC-ceEEEEeCCC--ChhHHHhCCCC----CccE-E
Q 029057 87 EI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG-TKFIKLDAEN--APFFVTKLGIK----TLPC-V 157 (200)
Q Consensus 87 ~i-~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~-v~f~~i~~~~--~~~l~~~~~i~----~~Pt-l 157 (200)
.| +-++|-..+.....|+|.|..+.-..-.. ...+.++|+...+ -.++.|||.+ ...||+++.+. --|. +
T Consensus 5 ~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 5 DISDHKDFKKLLRTRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred cccchHHHHHHHhhcCcEEEEEecchhhHHHH-HHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 44 56788888777777988887765444444 4588899998887 6788999987 57899999987 5553 4
Q ss_pred EEEeCCeE
Q 029057 158 IILRKGIA 165 (200)
Q Consensus 158 ~~~~~G~~ 165 (200)
.=|++|..
T Consensus 84 kHYKdG~f 91 (112)
T cd03067 84 KHYKDGDF 91 (112)
T ss_pred hcccCCCc
Confidence 45789863
No 212
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.12 Score=33.82 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=39.0
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCC--------------Chh--HHHhCCCCCccEEEEEeCCeEEE
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAEN--------------APF--FVTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~--------------~~~--l~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
+.|++..||.|..+...|+++.-+|. .|++.. .|. -++..|--++|++++ .+|+++-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd-----~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYD-----FVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCce-----eeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 57999999999998888888765553 333322 222 245667789999766 5676543
No 213
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.32 E-value=0.15 Score=33.11 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=47.2
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCCChhHHHhCCCCCccEEEE
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAENAPFFVTKLGIKTLPCVII 159 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~~~~l~~~~~i~~~Ptl~~ 159 (200)
++..|-+...+.+......+.++.+.+.+ ..+=-||+.++|.+++.++|-.+||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 34456666669999999999999888754 7788899999999999999999999653
No 214
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.21 E-value=0.055 Score=42.48 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.6
Q ss_pred CcEEEEEecCCChhhHHHHHHH---HHHhhhcCC-ceEEEEeC
Q 029057 101 EKAICHFYHKEFYRCKIMDKHL---KALAPKHIG-TKFIKLDA 139 (200)
Q Consensus 101 ~~vvV~Fy~~~c~~C~~~~~~l---~~la~~~~~-v~f~~i~~ 139 (200)
.+.||.|+...||+|..+.+.+ ..+.+.+++ ++|+++.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 4568999999999999999876 788888874 77776543
No 215
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.19 E-value=0.061 Score=37.39 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=51.1
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh----hHHHhCCCCCccEEEEE-eCCeEEEEEeccccCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP----FFVTKLGIKTLPCVIIL-RKGIAIDRLVGFQDLGGK 178 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~----~l~~~~~i~~~Ptl~~~-~~G~~~~~~~G~~~~g~~ 178 (200)
|..|+.++|+.|+.....|++. ++.|-.+|+.+.+ .+..-++-.+.+.--++ ++|..... .|... .
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~-l~~~~---~ 71 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRK-LGLAD---K 71 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHH-cCCcc---c
Confidence 3578999999999998877764 4566667765542 23333333344443344 44443222 23321 2
Q ss_pred CCCcHHHHHHHHHHcCCcc
Q 029057 179 DDFTTKTLEVLLVKKGIAS 197 (200)
Q Consensus 179 ~~~~~e~Le~~L~~~~vi~ 197 (200)
..++.+++-.+|.++..+-
T Consensus 72 ~~ls~~e~~~~l~~~p~Li 90 (105)
T cd02977 72 DELSDEEALELMAEHPKLI 90 (105)
T ss_pred cCCCHHHHHHHHHhCcCee
Confidence 4567888888888887553
No 216
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.11 E-value=0.11 Score=36.87 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.2
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeC
Q 029057 102 KAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDA 139 (200)
Q Consensus 102 ~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~ 139 (200)
.+++.|..|.|+.|......++++..+|. +++||+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~---ilrVNI 37 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYD---ILRVNI 37 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhcccc---EEEEEe
Confidence 47899999999999999999999998884 444443
No 217
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.47 E-value=0.46 Score=30.18 Aligned_cols=57 Identities=9% Similarity=0.102 Sum_probs=37.4
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-hhHHHhCCCCCccEEEEEeCCeE
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-PFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
+.|+.+||+.|.+..-.+....-. ..++.++.... +.+.+..+...+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 457789999999988777665433 35555554432 45556667788999753 34643
No 218
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.54 Score=43.06 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=65.6
Q ss_pred CceEEc--ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHH-H--HHHhhhcC-CceEEEEeCCCChhHHHhCC------
Q 029057 83 GEYREI--GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKH-L--KALAPKHI-GTKFIKLDAENAPFFVTKLG------ 150 (200)
Q Consensus 83 g~v~~i--~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~-l--~~la~~~~-~v~f~~i~~~~~~~l~~~~~------ 150 (200)
..|..- .++.|..+-....++++-...+||--|..|... + .++|+-.- +..-++||-++-|++-+-|.
T Consensus 24 nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~ 103 (667)
T COG1331 24 NPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAI 103 (667)
T ss_pred CCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHh
Confidence 345444 788999888888899999999999999999853 2 33443332 26777888888888766663
Q ss_pred --CCCccEEEEE-eCCeEEE--EEeccc
Q 029057 151 --IKTLPCVIIL-RKGIAID--RLVGFQ 173 (200)
Q Consensus 151 --i~~~Ptl~~~-~~G~~~~--~~~G~~ 173 (200)
--+.|--+|. .+|++.. +++...
T Consensus 104 tG~GGWPLtVfLTPd~kPFfagTY~P~e 131 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFFAGTYFPKE 131 (667)
T ss_pred ccCCCCceeEEECCCCceeeeeeecCCc
Confidence 5689966666 9999864 444444
No 219
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.13 E-value=0.77 Score=28.90 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=36.2
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC----CChhHHHhCCCCCccEEEEEeCCe
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE----NAPFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~----~~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
..|+.++|+.|+.+.-.+....-.| ....++.. ..+.+.+..+...+|++.. .+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 3577889999999988877664443 33444432 2345566667778999864 3443
No 220
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.11 E-value=0.69 Score=29.27 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=31.6
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCe
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
.++.++|+.|++..-.|....-.| ..+.++........+..+-..+|++.. .+|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~---~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV---EQIILQNDDEATPIRMIGAKQVPILEK-DDGS 57 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe---EEEECCCCchHHHHHhcCCCccCEEEe-CCCe
Confidence 567789999999887776653332 333344333222333445567898743 3354
No 221
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=92.05 E-value=2.3 Score=29.34 Aligned_cols=98 Identities=13% Similarity=0.223 Sum_probs=58.6
Q ss_pred EEc-ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcC-CceEEEEeCCCChhHHHhCCCCCccEEEEEeCC
Q 029057 86 REI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHI-GTKFIKLDAENAPFFVTKLGIKTLPCVIILRKG 163 (200)
Q Consensus 86 ~~i-~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~-~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G 163 (200)
.++ +.+++...+...+.+||-|+..--. .....+.++|..+. +..|+.. ..+.+...+++ .|++++|+..
T Consensus 3 ~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~--~~~ivl~~p~ 74 (104)
T cd03069 3 VELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHT---SDKQLLEKYGY--GEGVVLFRPP 74 (104)
T ss_pred cccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEE---ChHHHHHhcCC--CCceEEEech
Confidence 345 5666777676666677777766444 35567888888884 5888543 33456788888 6888888432
Q ss_pred eEEEEE-eccccCCCCCCCcHHHHHHHHHHc
Q 029057 164 IAIDRL-VGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 164 ~~~~~~-~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
.....+ .+...+.| .++.+.|..|+..+
T Consensus 75 ~~~~k~de~~~~y~g--~~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDG--DLDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccC--cCCHHHHHHHHHhh
Confidence 100000 11111211 24578999998754
No 222
>PRK09301 circadian clock protein KaiB; Provisional
Probab=92.03 E-value=1.1 Score=31.29 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=63.0
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCC
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDD 180 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~ 180 (200)
++=.|.+...+.++.....+.++.+.+.. ..+=-||+.++|.+++.++|-.+||++=.- =.+..+++|-.+
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDls------ 80 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLS------ 80 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccc------
Confidence 66678888899999999999998776643 666778999999999999999999955432 345778888753
Q ss_pred CcHHHHHHHHHHcCCc
Q 029057 181 FTTKTLEVLLVKKGIA 196 (200)
Q Consensus 181 ~~~e~Le~~L~~~~vi 196 (200)
..++.|.-.++.
T Consensus 81 ----d~~kVL~~L~l~ 92 (103)
T PRK09301 81 ----DREKVLIGLDLL 92 (103)
T ss_pred ----cHHHHHHhcCCC
Confidence 455556555543
No 223
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=91.59 E-value=0.81 Score=27.87 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=35.0
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh--hHHHhCCCCCccEEEEEeCCeE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP--FFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~--~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
.|+.++|+.|....-.+....-.| ....++..... .+....+-..+|++.. +|..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLPY---ELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCc---EEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence 578899999999887777664333 34444443332 2445567778998654 4543
No 224
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=91.48 E-value=0.58 Score=31.58 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=55.5
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEecccc
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
++=.|.+...+.++.....+.++.+.+.. ..+=-||+.++|.+++.++|-.+||++=.- =.+..+++|-.+
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGdls 77 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGDLS 77 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeecccc
Confidence 45567788889999999999998776643 667778999999999999999999965432 345677887654
No 225
>PRK12559 transcriptional regulator Spx; Provisional
Probab=91.32 E-value=0.23 Score=36.16 Aligned_cols=34 Identities=6% Similarity=0.161 Sum_probs=24.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA 142 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~ 142 (200)
|..|+.++|+.|+.....|..- ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCC
Confidence 4678999999999988777664 455555555444
No 226
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=91.22 E-value=0.18 Score=36.71 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=25.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP 143 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~ 143 (200)
|..|+.++|+.|+.....|.+. ++.|-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence 4578899999999988777655 4566666665543
No 227
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=90.91 E-value=0.58 Score=34.92 Aligned_cols=38 Identities=13% Similarity=-0.014 Sum_probs=28.0
Q ss_pred EEEEEecCCChhhHHH-HHHHHHHhhhcC--Cc-eEEEEeCC
Q 029057 103 AICHFYHKEFYRCKIM-DKHLKALAPKHI--GT-KFIKLDAE 140 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~-~~~l~~la~~~~--~v-~f~~i~~~ 140 (200)
||+.|...||+.|... .+.|.+...++. ++ .++.|..+
T Consensus 33 vl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 33 VIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred EEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 5556668899999998 888888888775 35 46666543
No 228
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.77 E-value=1 Score=29.10 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=32.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC----hhHHHhCCCCCccEEEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA----PFFVTKLGIKTLPCVII 159 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~----~~l~~~~~i~~~Ptl~~ 159 (200)
+..++.++|+.|++..-.+.+..- .|-.+++... +.+...-+-..+|+++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi-----~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL-----DVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC-----cEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 346777899999998877776643 3333444332 23434446678999754
No 229
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=90.63 E-value=2.2 Score=26.93 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=35.1
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCC----ChhHHHhCCCCCccEEEE
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAEN----APFFVTKLGIKTLPCVII 159 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~----~~~l~~~~~i~~~Ptl~~ 159 (200)
..|+.++|+.|+...-.+....-.| ....++... .+.+....+...+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~---e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLEL---NLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCC---EEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 4688899999998887777664443 444454322 255666667778999853
No 230
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.56 E-value=3.4 Score=28.81 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=58.6
Q ss_pred eEEc-ChhHHHHHHhCC-CcEEEEEecCCChhhHHHHHHHHHHhhhcC-CceEEEEeCCCChhHHHhCCCCCccEEEEEe
Q 029057 85 YREI-GEGDFLAEVTGS-EKAICHFYHKEFYRCKIMDKHLKALAPKHI-GTKFIKLDAENAPFFVTKLGIKTLPCVIILR 161 (200)
Q Consensus 85 v~~i-~~~~~~~~v~~~-~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~-~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~ 161 (200)
+.++ +.+++...+... ..+||-|+...-+ .....+.++|..+. +..|+... ...+..++++. .|.+++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEEC
Confidence 3456 667777776666 5666666665443 35567888998884 58885433 34667788875 57777775
Q ss_pred CCeEEEEEe-ccccCCCCCCCcHHH-HHHHHHHc
Q 029057 162 KGIAIDRLV-GFQDLGGKDDFTTKT-LEVLLVKK 193 (200)
Q Consensus 162 ~G~~~~~~~-G~~~~g~~~~~~~e~-Le~~L~~~ 193 (200)
.-.....+. +...+.+. .++++. |.+||..+
T Consensus 75 p~~~~~k~e~~~~~~~~~-~~~~~~~~~~f~~~~ 107 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKK-DSTSEDELKDFFKEH 107 (107)
T ss_pred cHHHhhhcCcceeeeecc-ccchHHHHHHHHhcC
Confidence 443331111 22222111 133445 88888753
No 231
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.53 E-value=0.3 Score=34.61 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=47.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh----hHHHhCCCCCccEEEEE-eCCeEEEEEeccccCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP----FFVTKLGIKTLPCVIIL-RKGIAIDRLVGFQDLGGK 178 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~----~l~~~~~i~~~Ptl~~~-~~G~~~~~~~G~~~~g~~ 178 (200)
+..|+.++|+.|+.....|++. ++.|-.+|+.+.+ .+..-+...+.|.--++ ++|.... -.|...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k-~l~~~~---- 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFK-NLNIDI---- 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHH-HcCCCc----
Confidence 3468889999999988888764 4566666765543 22222222223433233 4554332 233332
Q ss_pred CCCcHHHHHHHHHHcCCc
Q 029057 179 DDFTTKTLEVLLVKKGIA 196 (200)
Q Consensus 179 ~~~~~e~Le~~L~~~~vi 196 (200)
..++.+++-.+|.++..|
T Consensus 72 ~~ls~~e~i~~l~~~p~L 89 (115)
T cd03032 72 DELSLSELIRLISEHPSL 89 (115)
T ss_pred ccCCHHHHHHHHHhChhh
Confidence 245667777777777654
No 232
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.51 E-value=1.1 Score=28.17 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=33.3
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-hhHHHhCCCCCccEEE
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-PFFVTKLGIKTLPCVI 158 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-~~l~~~~~i~~~Ptl~ 158 (200)
..|+.++|+.|+...-.+....-.| ....++.... +.+.+..+...+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc---EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 4678899999999887776654443 3334444333 4455556677899764
No 233
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=90.19 E-value=0.98 Score=28.99 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=31.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIL 160 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~ 160 (200)
+..|+.++|+.|+...-.+....-.| .+..++....+.+ ..-+...+|++..-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y---~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY---EVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce---EEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 35688899999999987776654333 2222332222233 23455689997653
No 234
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=90.03 E-value=0.059 Score=44.62 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=52.6
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEe-CCCChhHHHhCCCCCccEEEEEeCCeEEEEEeccccC
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLD-AENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDL 175 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~-~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~ 175 (200)
.+++-+.||++|||..+..+|.+.-....|+.+....++ .-.-+....+|++.+.|++++. +-....++.|-..+
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l 151 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDL 151 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceee-ccccchhhcccccH
Confidence 455888999999999999999998888888754333332 2223667889999999998775 33333444455543
No 235
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=1.7 Score=30.05 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=37.8
Q ss_pred cCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCC-CCccEE-EEEeCCeEEE
Q 029057 109 HKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGI-KTLPCV-IILRKGIAID 167 (200)
Q Consensus 109 ~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i-~~~Ptl-~~~~~G~~~~ 167 (200)
.|-|+.+......|..+.. +.|..+|+-.++++.+.+.. .++||+ -+|-+|+.++
T Consensus 27 ~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CCCCCccHHHHHHHHHcCC----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 3556666666666655432 78999999988888776543 357776 5778998654
No 236
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.44 E-value=0.83 Score=32.38 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=49.3
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChh-------HHHhCCCCCccEEEEEeCCeEEEEEeccccCCC
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPF-------FVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGG 177 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~-------l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~ 177 (200)
..|+.++|+.|+.....|.+- ++.|-.+|+.+.+. +....+. -|.-++=+.|..... .|... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~l~~~~~~--~~~~lin~~~~~~k~-l~~~~--~ 71 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDGPTREELLDILSLLED--GIDPLLNTRGQSYRA-LNTSN--T 71 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCChhhHHHHHHHHHHcCC--CHHHheeCCCcchhh-CCchh--h
Confidence 468999999999998888773 56777788776543 2333332 122233355654322 23211 0
Q ss_pred CCCCcHHHHHHHHHHcCCcc
Q 029057 178 KDDFTTKTLEVLLVKKGIAS 197 (200)
Q Consensus 178 ~~~~~~e~Le~~L~~~~vi~ 197 (200)
...++.+++..+|.++..+-
T Consensus 72 ~~~ls~~e~~~~i~~~p~Li 91 (117)
T TIGR01617 72 FLDLSDKEALELLAEDPALL 91 (117)
T ss_pred cccCCHHHHHHHHHhCcceE
Confidence 23566777888888776553
No 237
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=88.44 E-value=0.84 Score=31.85 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=48.7
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-------hHHHhCCCCCccEEEEEeCCeEEEEEeccccCCC
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-------FFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGG 177 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-------~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~ 177 (200)
..|+.|+|+.|+.....|.+- ++.|-.+|+.+.| .+...+|+ .-++=+.|.... -.|...
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p~s~~eL~~~l~~~g~----~~li~~~~~~yk-~l~l~~--- 68 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDGLDAATLERWLAKVGW----ETLLNKRGTTWR-KLDDAQ--- 68 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCCCCHHHHHHHHHHhCh----HHHHccCchHHH-hCChhh---
Confidence 568999999999988777665 4566666665543 34445552 222224444322 233331
Q ss_pred CCCCcHHHHHHHHHHcCCccc
Q 029057 178 KDDFTTKTLEVLLVKKGIASA 198 (200)
Q Consensus 178 ~~~~~~e~Le~~L~~~~vi~~ 198 (200)
.+..+.+++-.+|.+++.+-.
T Consensus 69 ~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 69 KAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred hccCCHHHHHHHHHhCcCeee
Confidence 134567788888888876543
No 238
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=88.07 E-value=5.8 Score=34.56 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=52.6
Q ss_pred CCCcEEEEEecCCChhhHHHHH--HHHHHhhhcC--CceEEEEeCCC--ChhHHHhCCCCCccEEEEE-eCCeEEEEEec
Q 029057 99 GSEKAICHFYHKEFYRCKIMDK--HLKALAPKHI--GTKFIKLDAEN--APFFVTKLGIKTLPCVIIL-RKGIAIDRLVG 171 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~--~l~~la~~~~--~v~f~~i~~~~--~~~l~~~~~i~~~Ptl~~~-~~G~~~~~~~G 171 (200)
..+.++|.|-+-.......|.. .+........ .+..++|.... +..+..-|.+..+|+++++ .+|.++..+.|
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeec
Confidence 3444778888888888888772 2233222221 24555665533 3556778999999999999 89999999999
Q ss_pred ccc
Q 029057 172 FQD 174 (200)
Q Consensus 172 ~~~ 174 (200)
+..
T Consensus 97 ~v~ 99 (506)
T KOG2507|consen 97 FVT 99 (506)
T ss_pred ccc
Confidence 986
No 239
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=87.51 E-value=3.3 Score=27.55 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=35.4
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-hhHHHhCCCCCccEEEE
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-PFFVTKLGIKTLPCVII 159 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-~~l~~~~~i~~~Ptl~~ 159 (200)
.+..|+.+.|+.|....-.+....-. ..++.++.... +.+.+..+...+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 45667788899999987777665433 34555555443 33555556778999764
No 240
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=87.31 E-value=0.26 Score=32.93 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=44.4
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeCCCChhHHHhCCCCCccEEE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDAENAPFFVTKLGIKTLPCVI 158 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~~~~~~l~~~~~i~~~Ptl~ 158 (200)
.|-+...+.+......+..+.+.+.+ ..+=-||+.++|.+++.++|-.+||++
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 35566667788888999999887654 788889999999999999999999964
No 241
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=86.66 E-value=6.2 Score=25.13 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=38.8
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-hhHHHhCCCCCccEEEEEeCCeE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-PFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
.++.++|+.|+++.-.+....-. ..+..++..+. +.+....+-..+|++. .+|..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~---~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~ 56 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP---YELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEV 56 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE---EEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEE
T ss_pred CCCcCCChHHHHHHHHHHHcCCe---EEEeccCcccchhHHHhhcccccceEEE--ECCEE
Confidence 36789999999988777655433 35666665553 5566677788899986 56763
No 242
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=86.49 E-value=11 Score=27.87 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=50.0
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCC----CccEEEEEeCCeEEEEEeccccCCCC
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIK----TLPCVIILRKGIAIDRLVGFQDLGGK 178 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~----~~Ptl~~~~~G~~~~~~~G~~~~g~~ 178 (200)
-++.|++|.|+=|....++|+.. +..+-.+..++-..+.++++|. +.=|.+ .||+.+. |=.+
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~-----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy~vE---GHVP---- 92 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKAN-----GFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGYYVE---GHVP---- 92 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhC-----CcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCEEEe---ccCC----
Confidence 45779999999999999888722 4455556666666677778874 455544 3776543 3333
Q ss_pred CCCcHHHHHHHHHHcC
Q 029057 179 DDFTTKTLEVLLVKKG 194 (200)
Q Consensus 179 ~~~~~e~Le~~L~~~~ 194 (200)
.+.+.++|....
T Consensus 93 ----a~aI~~ll~~~p 104 (149)
T COG3019 93 ----AEAIARLLAEKP 104 (149)
T ss_pred ----HHHHHHHHhCCC
Confidence 577888877553
No 243
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=86.40 E-value=8.3 Score=26.31 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=40.5
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEE-EEEecccc
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAI-DRLVGFQD 174 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~-~~~~G~~~ 174 (200)
.++.|..+. +.|..+...+++++.--+.+.+-..+... ..|++.+..+|+.. -++.|...
T Consensus 22 ~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 22 ELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred EEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 444555555 99999999999999887766664333211 37999998877432 45666653
No 244
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=86.32 E-value=0.87 Score=33.20 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=24.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA 142 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~ 142 (200)
+..|+.++|+.|+.....|.+- ++.|-.+|+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCC
Confidence 4568889999999987766553 456666666544
No 245
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=85.82 E-value=6.4 Score=24.48 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=35.2
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCC----ChhHHHhCCCCCccEEEEEeCCeE
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAEN----APFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~----~~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
..|+.++|+.|....-.+....-.| ....++... .+.+.+..+...+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~---~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPY---EWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCc---EEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 3578899999999887776654333 444454322 244445556668999864 4543
No 246
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.63 E-value=1.2 Score=38.08 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=52.1
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEE
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
-+--|++-.|-.|-..-+.|.-++--.|+++-..||-.-..+-.+.-+|.++|| +|.||+...
T Consensus 119 ~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPt--vflnGe~fg 181 (520)
T COG3634 119 HFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPT--VFLNGEEFG 181 (520)
T ss_pred eEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecce--EEEcchhhc
Confidence 344567788999999999999999999999999999877776677789999999 556887644
No 247
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=84.47 E-value=1.3 Score=23.17 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 029057 52 DDPELEKLHADRIAALKK 69 (200)
Q Consensus 52 dd~~le~~r~~R~~el~~ 69 (200)
+|++.+++|++|+++...
T Consensus 9 ed~ea~r~reeRla~y~a 26 (28)
T PF10587_consen 9 EDEEAERIREERLAAYAA 26 (28)
T ss_pred ccHHHHHHHHHHHHHHHc
Confidence 678899999999998743
No 248
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=83.82 E-value=12 Score=29.48 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=47.0
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh------------------hHHHhCCCCCccEEEEEeCCe
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP------------------FFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~------------------~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
||=+|.+-.|..|-..+..|.+|+.+ +++.-+...++-+. .....++..++-|=-++-||.
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~ 79 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR 79 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe
Confidence 45578889999999999999999988 57777776666542 133455666544444566996
Q ss_pred EEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 165 AIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 165 ~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
. ..+|.. ...+...+.+.
T Consensus 80 ~--~~~g~~---------~~~~~~ai~~~ 97 (202)
T PF06764_consen 80 E--HRVGSD---------RAAVEAAIQAA 97 (202)
T ss_dssp E--EEETT----------HHHHHHHHHHH
T ss_pred e--eeeccC---------HHHHHHHHHHh
Confidence 4 345665 35666665544
No 249
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=83.61 E-value=3.6 Score=33.37 Aligned_cols=71 Identities=8% Similarity=0.042 Sum_probs=42.9
Q ss_pred CCC-ceEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEE
Q 029057 81 GHG-EYREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVII 159 (200)
Q Consensus 81 ~~g-~v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~ 159 (200)
..+ ....++..++. ..++..|++..+.|||.|...+=.|-..-.+|.++.+.....+-. -.-.++||++|
T Consensus 41 ~~~~~~~kvsn~d~~---~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~~------d~~pn~Ptl~F 111 (249)
T PF06053_consen 41 PIGSNFFKVSNQDLA---PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDPY------DNYPNTPTLIF 111 (249)
T ss_pred CCCcceeeecCcccC---CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCcc------cCCCCCCeEEE
Confidence 344 45555544432 344558889999999999988766666666777653322222210 01247899887
Q ss_pred E
Q 029057 160 L 160 (200)
Q Consensus 160 ~ 160 (200)
.
T Consensus 112 ~ 112 (249)
T PF06053_consen 112 N 112 (249)
T ss_pred e
Confidence 6
No 250
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=83.27 E-value=9.9 Score=34.02 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=43.8
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEE-EEEecccc
Q 029057 101 EKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAI-DRLVGFQD 174 (200)
Q Consensus 101 ~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~-~~~~G~~~ 174 (200)
.+|-+.++.+.|+.|..+...+++++.--+.+++-..+.. ...|++.+..+|+.. -+|.|...
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~ 82 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPM 82 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCc
Confidence 3455556666899999999999999988777666432211 237999998877543 46666654
No 251
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=83.09 E-value=14 Score=26.09 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=66.3
Q ss_pred EcChhHHHHHHhC--CCcEEEEEecCCChhhHHHHHHHHHHhhhcC---CceEEEEeCCCChhHHH----hCCCC-CccE
Q 029057 87 EIGEGDFLAEVTG--SEKAICHFYHKEFYRCKIMDKHLKALAPKHI---GTKFIKLDAENAPFFVT----KLGIK-TLPC 156 (200)
Q Consensus 87 ~i~~~~~~~~v~~--~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~---~v~f~~i~~~~~~~l~~----~~~i~-~~Pt 156 (200)
.++.+++.+.-.. .+..+|-|-.+..+.-..|.+.++++|+.+. ++.|+-||.++.|-+.. -|+|. .=|-
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 3455555554432 2448889999999999999999999999875 49999999999886654 45543 2365
Q ss_pred EEEEe---CCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 157 VIILR---KGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 157 l~~~~---~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
+=+.. +........+.. +.-+.+.|+.|+..
T Consensus 85 IGVV~vtdadSvW~~m~~~~-----d~~t~~~Le~Wied 118 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDE-----DLPTAEELEDWIED 118 (120)
T ss_pred eeeEecccccceeEeccccc-----ccCcHHHHHHHHHh
Confidence 54441 111222222222 23457899999864
No 252
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=82.10 E-value=11 Score=26.49 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeC
Q 029057 114 RCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRK 162 (200)
Q Consensus 114 ~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~ 162 (200)
.-+.....+.++..+-+.. ..+.-+|.+-++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4444444555555554333 33444688899999999999999877
No 253
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=81.67 E-value=18 Score=26.38 Aligned_cols=87 Identities=6% Similarity=0.027 Sum_probs=43.8
Q ss_pred eEEc-ChhHHHHHHh-CCCcEEEEEecCCChhh-HHHHHHHHHHh--hhcCCceEEEEeCCCChhH---HHhCC---CCC
Q 029057 85 YREI-GEGDFLAEVT-GSEKAICHFYHKEFYRC-KIMDKHLKALA--PKHIGTKFIKLDAENAPFF---VTKLG---IKT 153 (200)
Q Consensus 85 v~~i-~~~~~~~~v~-~~~~vvV~Fy~~~c~~C-~~~~~~l~~la--~~~~~v~f~~i~~~~~~~l---~~~~~---i~~ 153 (200)
+.++ |.++....+. ..+..+| +-.+-|+=- ...+|...... .+-|+ .++.|=+....+. ++.|= -.+
T Consensus 18 f~eL~T~e~Vd~~~~~~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~aR~yf~~~pPS 95 (136)
T PF06491_consen 18 FEELTTAEEVDEALKNKEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAKAREYFEPYPPS 95 (136)
T ss_dssp -EE--SHHHHHHHHHH--SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHHHHHTSTTS---
T ss_pred ccccCCHHHHHHHHhCCCCcEEE-EEeccccccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHHHHHhcCCCCCC
Confidence 5677 8999999888 4444433 445667632 23455543332 23343 3344434433222 23331 247
Q ss_pred ccEEEEEeCCeEEEEEeccc
Q 029057 154 LPCVIILRKGIAIDRLVGFQ 173 (200)
Q Consensus 154 ~Ptl~~~~~G~~~~~~~G~~ 173 (200)
-|++.+||+|++++-+..-.
T Consensus 96 SPS~ALfKdGelvh~ieRh~ 115 (136)
T PF06491_consen 96 SPSIALFKDGELVHFIERHH 115 (136)
T ss_dssp SSEEEEEETTEEEEEE-GGG
T ss_pred CchheeeeCCEEEEEeehhh
Confidence 78999999999988665444
No 254
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=80.87 E-value=12 Score=23.84 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=36.0
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC----CChhHHHhCCCCCccEEEEEeCCeE
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE----NAPFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~----~~~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
..|+.+.|+.|+++.-.+.+..-. ..+..++.. ..+.+.+--+...+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 467888899998887666655443 345555542 224466666677899985 46653
No 255
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.83 E-value=3.1 Score=33.15 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=19.1
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCC
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIG 131 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~ 131 (200)
.++.|+...||+|+...+.+.+.....++
T Consensus 87 ~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 87 TVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred eEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 66777777777777777666665444443
No 256
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.86 E-value=3.6 Score=32.76 Aligned_cols=27 Identities=11% Similarity=0.125 Sum_probs=22.5
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhc
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKH 129 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~ 129 (200)
...-|..++|+.|+.....+..++..-
T Consensus 121 ~~~~f~~~~~~~~~~a~~~~~~~~~~~ 147 (244)
T COG1651 121 REFPFLDPACPYCRRAAQAARCAADQG 147 (244)
T ss_pred EEeecCCCCcHHHHHHHHHHHHhcccc
Confidence 556788999999999999888887753
No 257
>COG2118 DNA-binding protein [General function prediction only]
Probab=79.38 E-value=2.4 Score=29.92 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=18.0
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 029057 51 MDDPELEKLHADRIAALKKEA 71 (200)
Q Consensus 51 ~dd~~le~~r~~R~~el~~~~ 71 (200)
+||++|+.+|++++.+|++..
T Consensus 1 mdd~eLEeIRrrkl~eLQrq~ 21 (116)
T COG2118 1 MDDEELEEIRRRKLAELQRQA 21 (116)
T ss_pred CChHHHHHHHHHHHHHHHHhh
Confidence 367799999999999999844
No 258
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=79.07 E-value=2.1 Score=28.28 Aligned_cols=36 Identities=25% Similarity=0.595 Sum_probs=22.9
Q ss_pred CccEEEEE-eCCeEEEEEeccccCCCCCCCcHHHHHHHHHHcCC
Q 029057 153 TLPCVIIL-RKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGI 195 (200)
Q Consensus 153 ~~Ptl~~~-~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~~v 195 (200)
.-|++++| .+|+.+.++ .+ +.|+++.++++|.+.|.
T Consensus 41 ~~P~L~l~d~~g~~~E~i-~i------~~w~~d~i~efL~~kgf 77 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERI-NI------EKWKTDEIEEFLNEKGF 77 (78)
T ss_dssp ---EEEEE-SSS--SEEE-E-------SSSSHCHHHHHHHHHT-
T ss_pred CCCEEEEEcCCCCEEEEE-Ec------ccCCHHHHHHHHHHhCC
Confidence 46899999 578876663 33 46679999999998763
No 259
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=78.36 E-value=7 Score=30.69 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=40.3
Q ss_pred ChhHHHHHHhCCCcEEEEEecCCCh-hhHHHHHHHHHHhhhcC-----C--ceEEEEeCCCC-hhHHHhCCC
Q 029057 89 GEGDFLAEVTGSEKAICHFYHKEFY-RCKIMDKHLKALAPKHI-----G--TKFIKLDAENA-PFFVTKLGI 151 (200)
Q Consensus 89 ~~~~~~~~v~~~~~vvV~Fy~~~c~-~C~~~~~~l~~la~~~~-----~--v~f~~i~~~~~-~~l~~~~~i 151 (200)
+++.|...-.++.+++|.|.=+.|| .|-.+...+..+..+.. + +.|+.+|.+.. |...++|..
T Consensus 56 ~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 56 DGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 4555555545666788888777786 49888877766655543 2 45566665443 666666665
No 260
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.71 E-value=21 Score=32.00 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=43.1
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeE-EEEEecccc
Q 029057 102 KAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIA-IDRLVGFQD 174 (200)
Q Consensus 102 ~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~-~~~~~G~~~ 174 (200)
+|.+.++.+.|+.|..+...+++++.--+.+.+...+... .-.|++.++++|+. --+|.|...
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPG 83 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCC
Confidence 3444444447999999999999999887777664433221 24699999888763 346667654
No 261
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=76.65 E-value=5.2 Score=28.77 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=19.6
Q ss_pred hhHHHhCCCCCccEEEEEeCCeEEEEEecccc
Q 029057 143 PFFVTKLGIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 143 ~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
..++.+++|.++||+++ +|+ .+.|..+
T Consensus 119 ~~~~~~~gi~gtPt~~v--~g~---~~~G~~~ 145 (154)
T cd03023 119 RQLARALGITGTPAFII--GDT---VIPGAVP 145 (154)
T ss_pred HHHHHHcCCCcCCeEEE--CCE---EecCCCC
Confidence 34677899999999776 675 3456655
No 262
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=75.71 E-value=3.3 Score=29.18 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=48.8
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-------hHHHhCCCCCccE-EEEE-eCCeEEEEEeccccC
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-------FFVTKLGIKTLPC-VIIL-RKGIAIDRLVGFQDL 175 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-------~l~~~~~i~~~Pt-l~~~-~~G~~~~~~~G~~~~ 175 (200)
..|+.+.|..|+.....|++- ++.|-.+|+.+.| .+.+..| +++ --++ +.|..... .|...
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~p~t~~el~~~l~~~g---~~~~~~lin~~~~~~~~-l~~~~- 71 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKNPPTKSELEAIFAKLG---LTVAREMIRTKEALYKE-LGLSD- 71 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCCCcCHHHHHHHHHHcC---CchHHHHHhcCCcHHHH-cCCCc-
Confidence 468899999999988877764 4566666665543 3445544 332 1123 45543222 23322
Q ss_pred CCCCCCcHHHHHHHHHHcCCcccC
Q 029057 176 GGKDDFTTKTLEVLLVKKGIASAL 199 (200)
Q Consensus 176 g~~~~~~~e~Le~~L~~~~vi~~~ 199 (200)
..++.+++-.+|.+++.+-.-
T Consensus 72 ---~~ls~~e~i~~l~~~P~LikR 92 (114)
T TIGR00014 72 ---PNLSDQELLDAMVAHPILLER 92 (114)
T ss_pred ---cCCCHHHHHHHHHHCcCcccC
Confidence 255667788888888765443
No 263
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=75.39 E-value=6.9 Score=28.48 Aligned_cols=26 Identities=15% Similarity=0.595 Sum_probs=22.0
Q ss_pred CCCChhHHHhCCCCCccEEEEEeCCe
Q 029057 139 AENAPFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 139 ~~~~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
+.=+|.+-++|+|+.+|++++.+++.
T Consensus 57 v~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred EEEChHHHhhcCceEcCEEEEECCCC
Confidence 33468899999999999999998774
No 264
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=75.18 E-value=5.5 Score=27.67 Aligned_cols=57 Identities=16% Similarity=0.324 Sum_probs=37.0
Q ss_pred EecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCC--CccEEEE-EeCCe
Q 029057 107 FYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIK--TLPCVII-LRKGI 164 (200)
Q Consensus 107 Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~--~~Ptl~~-~~~G~ 164 (200)
||..+|+-|......+.... ....+.|+-+.......+...+++. ...+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 89999999999998888773 2334677666433444445566654 3444444 47776
No 265
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=74.54 E-value=5.8 Score=29.98 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=19.7
Q ss_pred hHHHhCCCCCccEEEEEeCCeEEEEEecccc
Q 029057 144 FFVTKLGIKTLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 144 ~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
..+.++||.++||+++ ||+ .+.|...
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~ 183 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDR 183 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eeccccc
Confidence 3567789999999887 785 4457765
No 266
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=73.60 E-value=28 Score=25.08 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCCceEEEEeCCCChh----------HHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHH
Q 029057 118 MDKHLKALAPKHIGTKFIKLDAENAPF----------FVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLE 187 (200)
Q Consensus 118 ~~~~l~~la~~~~~v~f~~i~~~~~~~----------l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le 187 (200)
+...++.|.+ .++.+.|.|...+|. +...-|...+|.+++ ||+++.. |..+ +.++|.
T Consensus 29 ~a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~--G~YP-------t~eEl~ 95 (123)
T PF06953_consen 29 FAADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKT--GRYP-------TNEELA 95 (123)
T ss_dssp HHHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEE--SS----------HHHHH
T ss_pred HHHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEe--cCCC-------CHHHHH
Confidence 3444444433 379999999998763 344568889998666 9987764 5544 368888
Q ss_pred HHHHHc
Q 029057 188 VLLVKK 193 (200)
Q Consensus 188 ~~L~~~ 193 (200)
+|+.-.
T Consensus 96 ~~~~i~ 101 (123)
T PF06953_consen 96 EWLGIS 101 (123)
T ss_dssp HHHT--
T ss_pred HHhCCC
Confidence 887643
No 267
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=72.07 E-value=5.1 Score=22.34 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.0
Q ss_pred CCCcHHHHHHHHHHcCCccc
Q 029057 179 DDFTTKTLEVLLVKKGIASA 198 (200)
Q Consensus 179 ~~~~~e~Le~~L~~~~vi~~ 198 (200)
+.|+.++|..||..+||..+
T Consensus 2 dtWs~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCCCHHHHHHHHHHcCCCCC
Confidence 35789999999999998754
No 268
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.58 E-value=4.8 Score=30.53 Aligned_cols=27 Identities=15% Similarity=0.077 Sum_probs=24.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHI 130 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~ 130 (200)
|.+|+.+.||.|-...+.+.++.++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568999999999999999999999984
No 269
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=71.42 E-value=11 Score=26.73 Aligned_cols=49 Identities=14% Similarity=0.284 Sum_probs=33.0
Q ss_pred ChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-hHHHhCC--CCCccEEEEE
Q 029057 112 FYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-FFVTKLG--IKTLPCVIIL 160 (200)
Q Consensus 112 c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-~l~~~~~--i~~~Ptl~~~ 160 (200)
|++|..+.-.|...-.--..+.+.+|+...-. .+....| -+++|++++=
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 99999988777554433334788888887663 3444444 3689998764
No 270
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=70.64 E-value=4.4 Score=28.43 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=46.2
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-------hHHHhCCCCCccEEEEE-eCCeEEEEEeccccCC
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-------FFVTKLGIKTLPCVIIL-RKGIAIDRLVGFQDLG 176 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-------~l~~~~~i~~~Ptl~~~-~~G~~~~~~~G~~~~g 176 (200)
..|+.+.|..|+.....|++- ++.|..+|+.+.| .+....+. +.--++ +.|... +-.+...
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~~~t~~el~~~l~~~~~---~~~~lin~~~~~y-~~l~~~~-- 70 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKTPPTAAELRELLAKLGI---SPRDLLRTKEAPY-KELGLAD-- 70 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccCCcCHHHHHHHHHHcCC---CHHHHHhcCCchH-HHcCCCc--
Confidence 468899999999988777654 4555566665443 34445542 111222 344322 2223322
Q ss_pred CCCCCcHHHHHHHHHHcCCccc
Q 029057 177 GKDDFTTKTLEVLLVKKGIASA 198 (200)
Q Consensus 177 ~~~~~~~e~Le~~L~~~~vi~~ 198 (200)
..++.+++-.+|.+++.|-.
T Consensus 71 --~~ls~~e~i~ll~~~P~Lik 90 (112)
T cd03034 71 --PELSDEELIDAMAAHPILIE 90 (112)
T ss_pred --cCCCHHHHHHHHHhCcCccc
Confidence 35567777788887766543
No 271
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.49 E-value=9.7 Score=30.41 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 145 FVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 145 l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
.+.+.||+++||++| +|+ ..+.|..+ .+.++..|.+
T Consensus 176 ~A~e~gI~gVP~fv~--d~~--~~V~Gaq~--------~~v~~~al~~ 211 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGK--YAVSGAQP--------YDVLEDALRQ 211 (225)
T ss_pred HHHHCCCccCceEEE--cCc--EeecCCCC--------HHHHHHHHHH
Confidence 567899999999998 443 33457765 3555555543
No 272
>PRK10026 arsenate reductase; Provisional
Probab=69.14 E-value=6.4 Score=29.08 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=44.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-------hHHHhCCCCCccEEEEE-eCCeEEEEEeccccC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-------FFVTKLGIKTLPCVIIL-RKGIAIDRLVGFQDL 175 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-------~l~~~~~i~~~Ptl~~~-~~G~~~~~~~G~~~~ 175 (200)
+..|+.|.|..|+.....|.+- ++.|-.+|+-+.| .+...++ +++--++ ..|.. .+-.|...
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~ppt~~eL~~~l~~~g---~~~~~lint~~~~-yr~L~~~~- 73 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLETPPTRDELVKLIADMG---ISVRALLRKNVEP-YEELGLAE- 73 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCCCcCHHHHHHHHHhCC---CCHHHHHHcCCch-HHHcCCCc-
Confidence 4567889999999988777665 4444555543332 2344433 3333333 34432 22223322
Q ss_pred CCCCCCcHHHHHHHHHHcCCcc
Q 029057 176 GGKDDFTTKTLEVLLVKKGIAS 197 (200)
Q Consensus 176 g~~~~~~~e~Le~~L~~~~vi~ 197 (200)
+.++.+.+-.+|.+++.|-
T Consensus 74 ---~~ls~~e~l~ll~~~P~LI 92 (141)
T PRK10026 74 ---DKFTDDQLIDFMLQHPILI 92 (141)
T ss_pred ---cCCCHHHHHHHHHhCccce
Confidence 2355666777777766543
No 273
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.77 E-value=8.2 Score=30.20 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=30.0
Q ss_pred hhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 143 PFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 143 ~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
..+++++++.++||+++-+||+...--.| .-++. .+.+..+|.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g-~y~~~-----~~~~~arl~~~ 208 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTG-AYFGS-----PDAWLARLAQR 208 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCC-cccCC-----cHHHHHHHHHH
Confidence 34788999999999999999986543334 22332 35555555543
No 274
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=67.64 E-value=28 Score=21.81 Aligned_cols=56 Identities=7% Similarity=0.074 Sum_probs=34.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC----CChhHHHhCCCCCccEEEEEeCCe
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE----NAPFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~----~~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
+..|+.+.|+.|+...-.+....-.| .+..++.. ..+.+.+..+...+|++. .+|.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~---~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~ 61 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDY---ELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDL 61 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCc---EEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCE
Confidence 34556677999998887776654433 44444442 234556666778899874 3453
No 275
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=67.08 E-value=12 Score=28.46 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=24.3
Q ss_pred hhHHHhCCCCCccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHH
Q 029057 143 PFFVTKLGIKTLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLL 190 (200)
Q Consensus 143 ~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L 190 (200)
...+.+.||.++||+++ ||+. .+.|..+ .+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~--------~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQP--------PEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCC--------HHHHHHHh
Confidence 34567889999999887 6653 2456665 46665544
No 276
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=66.28 E-value=37 Score=25.58 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=32.2
Q ss_pred eEEcChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeC
Q 029057 85 YREIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDA 139 (200)
Q Consensus 85 v~~i~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~ 139 (200)
+..++++.+.-.--++..++|.=.|+.|+.--.. .-|+.|.++|.+ ..++-.-|
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccc
Confidence 4445444444333455557788899999876643 356777777764 44444444
No 277
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=65.68 E-value=13 Score=29.89 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=47.0
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC------------------hhHHHhCCCCCccEEEEEeCCe
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA------------------PFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~------------------~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
||=+|.+-.|..|-..+..|.+++.+- ++.-+...++-+ ......|+-.+++|--.+-||.
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~~-~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADDP-GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccCC-CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 777888889999999999999999774 455555444432 2355678889999988888886
Q ss_pred E
Q 029057 165 A 165 (200)
Q Consensus 165 ~ 165 (200)
.
T Consensus 123 ~ 123 (261)
T COG5429 123 V 123 (261)
T ss_pred h
Confidence 4
No 278
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=64.46 E-value=14 Score=26.00 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=23.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA 142 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~ 142 (200)
+..|+.|.|+.|+.....|++- ++.|-.+|+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC
Confidence 4578899999999988777654 355555555443
No 279
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.35 E-value=37 Score=27.10 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=38.8
Q ss_pred hCCCcEEEEEe-----cCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCC-CCccEE-EEEeCCeEE
Q 029057 98 TGSEKAICHFY-----HKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGI-KTLPCV-IILRKGIAI 166 (200)
Q Consensus 98 ~~~~~vvV~Fy-----~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i-~~~Ptl-~~~~~G~~~ 166 (200)
.++.+|+ .|- .|.|+..+.+..+|... ++.|...|+-.+..+...+.. ..+||+ -+|-+|+.+
T Consensus 136 v~a~~v~-lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 136 VKAKPVM-LFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred cccCeEE-EEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEec
Confidence 3444554 453 35566666666666554 466888888887766554432 357776 577888754
No 280
>PF09444 MRC1: MRC1-like domain; InterPro: IPR018564 This putative domain is found in the most conserved region in mediator of replication checkpoint protein 1. This protein is a component of the replisome and is required for Rad3-dependent activation of the checkpoint kinase Cds1 in response to replication fork arrest [].
Probab=62.62 E-value=23 Score=26.28 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=14.3
Q ss_pred CcccccccCCChHHHHHHHHHHHH
Q 029057 42 NDEVDLDELMDDPELEKLHADRIA 65 (200)
Q Consensus 42 ~~~~dld~l~dd~~le~~r~~R~~ 65 (200)
....+|++. +|+.+..+|.+|.+
T Consensus 94 g~d~dlsDs-eDe~~~~~R~krr~ 116 (145)
T PF09444_consen 94 GDDLDLSDS-EDEDLARRRRKRRE 116 (145)
T ss_pred CCcCccCcc-chHHHHHHHHHHHH
Confidence 344556666 66667777766554
No 281
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=62.01 E-value=33 Score=21.31 Aligned_cols=57 Identities=5% Similarity=0.110 Sum_probs=33.2
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCC-ChhHHHhCCCCCccEEEEEeCCe
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAEN-APFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~-~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
.|+.+.|+.|.+..-.+....... ....+.++... .+.+....+...+|++.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 567888999998776665521111 13444554322 345555556778998753 3554
No 282
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=59.70 E-value=10 Score=29.51 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=17.6
Q ss_pred hHHHhCCCCCccEEEEEeCCeEEE
Q 029057 144 FFVTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 144 ~l~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
....++||.++||+++ ||+.+-
T Consensus 158 ~~a~~~gI~gtPtfiI--nGky~v 179 (207)
T PRK10954 158 KAAADLQLRGVPAMFV--NGKYMV 179 (207)
T ss_pred HHHHHcCCCCCCEEEE--CCEEEE
Confidence 4567899999999877 888644
No 283
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=58.65 E-value=8.9 Score=29.08 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=31.6
Q ss_pred ChhHHHHHHhCCCcEEEEEecCCCh-hhHHHHHHHHHHhhhc----CCceEEEEeCC
Q 029057 89 GEGDFLAEVTGSEKAICHFYHKEFY-RCKIMDKHLKALAPKH----IGTKFIKLDAE 140 (200)
Q Consensus 89 ~~~~~~~~v~~~~~vvV~Fy~~~c~-~C~~~~~~l~~la~~~----~~v~f~~i~~~ 140 (200)
+++.+...-..++.++|.|.-+.|+ .|-.+...|.++.++. .++.++.|.++
T Consensus 41 ~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 41 DGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 4444443334566678888888885 6887777776665543 24666666554
No 284
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=57.28 E-value=46 Score=20.90 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=34.4
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC---CChhHHHhCCCCCccEEEEEeCCe
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE---NAPFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~---~~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
.|+.+.|+.|....-.+....-. ..+..++.. ..+.+.+......+|++.. .+|.
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~ 60 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGLD---VEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGF 60 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCCc---eEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCC
Confidence 46667788898877666654322 455555553 2455566667788999854 3454
No 285
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=55.42 E-value=67 Score=25.57 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=39.9
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~ 167 (200)
.|....|..|-.+...++.-. -.++++| +++...+++.-+-+|-++|. +|.+|+.+.
T Consensus 15 I~~HktC~ssy~Lf~~L~nkg-ll~~Vki--i~a~~p~f~~~~~~V~SvP~--Vf~DGel~~ 71 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLENKG-LLGKVKI--IDAELPPFLAFEKGVISVPS--VFIDGELVY 71 (265)
T ss_pred EEEecchHHHHHHHHHHHhcC-CCCCceE--EEcCCChHHHhhcceeecce--EEEcCeEEE
Confidence 466678999988776665411 1234665 46677788887878999999 567998754
No 286
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=55.16 E-value=23 Score=23.99 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=22.5
Q ss_pred CceEEEEeCCCChhHHHh----C----CCCCccEEEEEeCCeEEEE
Q 029057 131 GTKFIKLDAENAPFFVTK----L----GIKTLPCVIILRKGIAIDR 168 (200)
Q Consensus 131 ~v~f~~i~~~~~~~l~~~----~----~i~~~Ptl~~~~~G~~~~~ 168 (200)
++.|-.+|++.++..... - +-..+|- +|.+|+.++.
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQ--IFi~~~~iGg 73 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQ--IFNGDEYCGD 73 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCE--EEECCEEeeC
Confidence 588999999877653332 2 2356676 4567765543
No 287
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=54.93 E-value=26 Score=17.35 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029057 57 EKLHADRIAALKKEAEK 73 (200)
Q Consensus 57 e~~r~~R~~el~~~~~~ 73 (200)
++||.+|+..|+....+
T Consensus 3 ~kwrkkrmrrlkrkrr~ 19 (26)
T KOG4752|consen 3 AKWRKKRMRRLKRKRRK 19 (26)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 57999999998876544
No 288
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=52.28 E-value=92 Score=23.95 Aligned_cols=59 Identities=7% Similarity=0.118 Sum_probs=38.1
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-hhHHHhCCCCCccEEEEEeCCeEE
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-PFFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-~~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
.+..|+.++|+.|....=.+....-. .....|+.... +.+........+|++. .+|..+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVS---VEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCC---CEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 45566678899999988767665433 34556665443 3555556677899985 366543
No 289
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=52.15 E-value=96 Score=26.66 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=62.1
Q ss_pred CceEEcChhHHHHHHhCC--CcEEEEEecCCChhhHHHHHHHHHHhhhc---CCceEEEEeCCCChhHH----HhCCCC-
Q 029057 83 GEYREIGEGDFLAEVTGS--EKAICHFYHKEFYRCKIMDKHLKALAPKH---IGTKFIKLDAENAPFFV----TKLGIK- 152 (200)
Q Consensus 83 g~v~~i~~~~~~~~v~~~--~~vvV~Fy~~~c~~C~~~~~~l~~la~~~---~~v~f~~i~~~~~~~l~----~~~~i~- 152 (200)
..++.++..++...-... +..+|-|.....+.-..+...++++|+.+ |+..++.||.++-|-+. +-|+|.
T Consensus 249 ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl 328 (383)
T PF01216_consen 249 PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDL 328 (383)
T ss_dssp -SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-T
T ss_pred hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccc
Confidence 457888888877766433 33788899999999999999999999876 45999999999987654 445653
Q ss_pred CccEEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHH
Q 029057 153 TLPCVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVK 192 (200)
Q Consensus 153 ~~Ptl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~ 192 (200)
.=|-+-+..=...-.-...+.+ .-+.-+.+.|+.|+..
T Consensus 329 ~~PqIGvVnvtdadsvW~dm~d--~~d~pt~~~LedWieD 366 (383)
T PF01216_consen 329 SRPQIGVVNVTDADSVWMDMDD--DDDLPTAEELEDWIED 366 (383)
T ss_dssp TS-EEEEEETTTSEEEEC-STT--TSS---HHHHHHHHHH
T ss_pred cCCceeEEeccccccchhccCC--cccCCcHHHHHHHHHH
Confidence 2477766532111111111211 1122357889999874
No 290
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.59 E-value=27 Score=26.33 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=17.9
Q ss_pred hhHHHhCCCCCccEEEEEeCCe
Q 029057 143 PFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 143 ~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
...+.++||.++||+++..++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3456788999999999997765
No 291
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=51.31 E-value=25 Score=28.29 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=31.9
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHhhh-----cCCceEEEEeCCCC
Q 029057 102 KAICHFYHKEFYRCKIMDKHLKALAPK-----HIGTKFIKLDAENA 142 (200)
Q Consensus 102 ~vvV~Fy~~~c~~C~~~~~~l~~la~~-----~~~v~f~~i~~~~~ 142 (200)
.+||-+-..+|..|..-...|+.|..+ +++|.|+.||--..
T Consensus 28 VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 28 VTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred EEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 377788888999999888888777643 56799999986543
No 292
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=49.75 E-value=63 Score=20.21 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=34.8
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCC----ChhHHHhCCCCCccEEEEEeCCe
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAEN----APFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~----~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
..|+.+.++.|+.+.-.+....-.| ....++... .+.+........+|++.. +|.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~ 60 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPF---EECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDF 60 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCc---EEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCE
Confidence 3567788999988876666654443 444555432 235556667788999853 554
No 293
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=49.48 E-value=51 Score=26.06 Aligned_cols=69 Identities=20% Similarity=0.371 Sum_probs=41.2
Q ss_pred EEEEEe-----cCCChhhHHHHHHH-HHHhhhc-CCceEEEEeCCC---------------------ChhHHHhCCC---
Q 029057 103 AICHFY-----HKEFYRCKIMDKHL-KALAPKH-IGTKFIKLDAEN---------------------APFFVTKLGI--- 151 (200)
Q Consensus 103 vvV~Fy-----~~~c~~C~~~~~~l-~~la~~~-~~v~f~~i~~~~---------------------~~~l~~~~~i--- 151 (200)
+|.||. ...|+-|..+...+ ..+..-. .++.|+.|--.- ..++...|++
T Consensus 71 ivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn~D~~~~~~ 150 (211)
T PF05988_consen 71 IVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFNYDFGVSFD 150 (211)
T ss_pred EEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCcccccccceec
Confidence 666774 67899999998888 3333222 247777664211 1224445565
Q ss_pred --CCccEEEEE-eCC-eEEEEEec
Q 029057 152 --KTLPCVIIL-RKG-IAIDRLVG 171 (200)
Q Consensus 152 --~~~Ptl~~~-~~G-~~~~~~~G 171 (200)
...|.+-+| ++| ++.+++..
T Consensus 151 ~~~~~~g~svF~Rdg~~VfhTyst 174 (211)
T PF05988_consen 151 EGGEMPGLSVFLRDGGRVFHTYST 174 (211)
T ss_pred cCCCceeEEEEEEcCCEEEEEeec
Confidence 568888777 655 44455443
No 294
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.03 E-value=17 Score=26.06 Aligned_cols=19 Identities=42% Similarity=0.784 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 029057 53 DPELEKLHADRIAALKKEA 71 (200)
Q Consensus 53 d~~le~~r~~R~~el~~~~ 71 (200)
|++++.+|++|+.+|+...
T Consensus 2 D~eL~AiR~qRlaqlqa~~ 20 (129)
T KOG3431|consen 2 DPELQAIRAQRLAQLQANS 20 (129)
T ss_pred chHHHHHHHHHHHHhhhhc
Confidence 6789999999999998765
No 295
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=46.15 E-value=63 Score=28.34 Aligned_cols=33 Identities=6% Similarity=-0.002 Sum_probs=23.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEE
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIK 136 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~ 136 (200)
+|-|.+-+-+.-..+.|.++++.+.||++.++-
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilv 83 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILV 83 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEE
Confidence 356777777777777777777777777755543
No 296
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=44.69 E-value=59 Score=18.48 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 029057 52 DDPELEKLHADRIAALKKEAEKRQV 76 (200)
Q Consensus 52 dd~~le~~r~~R~~el~~~~~~~~~ 76 (200)
|+.+++++++.-+.++.+++++.+.
T Consensus 1 ~~~dle~~KqEIL~EvrkEl~K~K~ 25 (40)
T PF08776_consen 1 DSSDLERLKQEILEEVRKELQKVKE 25 (40)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899899998888877543
No 297
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=44.27 E-value=77 Score=19.65 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=31.6
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-hhHHHhCCC-CCccEEEEEeCCe
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-PFFVTKLGI-KTLPCVIILRKGI 164 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-~~l~~~~~i-~~~Ptl~~~~~G~ 164 (200)
.++.+.|+.|.+..-.+....-.| ....++.... +.+.+.... ..+|++.. +|.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~ 58 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPY---EYVEEDLGNKSELLLASNPVHKKIPVLLH--NGK 58 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCC---EEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCE
Confidence 456778999999887776654433 3334444322 333333343 57998753 553
No 298
>PRK10853 putative reductase; Provisional
Probab=43.89 E-value=42 Score=23.76 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=23.8
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA 142 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~ 142 (200)
+..|+.+.|..|+.....|++- ++.|-.+|.-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccC
Confidence 4568889999999988877754 455555555443
No 299
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=43.55 E-value=1.2e+02 Score=25.52 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=37.8
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC--hhHHHhCCCCCccEEEE
Q 029057 102 KAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA--PFFVTKLGIKTLPCVII 159 (200)
Q Consensus 102 ~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~--~~l~~~~~i~~~Ptl~~ 159 (200)
.+||.+. |+.|+.....|..+......+.++-||+... ...+..+.-..+|.+-+
T Consensus 78 ~~lIELG---sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v 134 (319)
T TIGR03439 78 SMLVELG---SGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRC 134 (319)
T ss_pred CEEEEEC---CCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEE
Confidence 3778887 7888888888888875555689999999865 23344444345665544
No 300
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=42.62 E-value=1.5e+02 Score=24.38 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=31.2
Q ss_pred ChhHHHHHHhCCCcEEEEEecCCChh-hHHHHHHHHHHhh----hcCCc---eEEEEeCCC
Q 029057 89 GEGDFLAEVTGSEKAICHFYHKEFYR-CKIMDKHLKALAP----KHIGT---KFIKLDAEN 141 (200)
Q Consensus 89 ~~~~~~~~v~~~~~vvV~Fy~~~c~~-C~~~~~~l~~la~----~~~~v---~f~~i~~~~ 141 (200)
+++.+.+.-..+..++++|.-+.||. |-.....|..+.. +..-. .|+.+|.+.
T Consensus 128 ~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR 188 (280)
T KOG2792|consen 128 DGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPER 188 (280)
T ss_pred CCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence 34444333334555999999999986 7655554444433 32222 688888754
No 301
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=42.58 E-value=32 Score=24.46 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=20.2
Q ss_pred EEEEecCCChhhHHHHHHHHHHhhhc
Q 029057 104 ICHFYHKEFYRCKIMDKHLKALAPKH 129 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~la~~~ 129 (200)
|..|+.|.|..|+.....|++-.-.|
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~ 28 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEY 28 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 56788999999999888887654443
No 302
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=42.55 E-value=40 Score=26.55 Aligned_cols=30 Identities=20% Similarity=0.526 Sum_probs=21.8
Q ss_pred ChhHHHhCCCCCccEEEEEeCCeEEEEEecc
Q 029057 142 APFFVTKLGIKTLPCVIILRKGIAIDRLVGF 172 (200)
Q Consensus 142 ~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~ 172 (200)
+|.+-+.|+|..+|++++... ...+.+.|=
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GN 180 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGN 180 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEec
Confidence 688899999999999999733 223444443
No 303
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=42.25 E-value=22 Score=24.59 Aligned_cols=82 Identities=13% Similarity=0.074 Sum_probs=40.1
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhc--CCceEEEEeCCCChhH----HHhCC------CCCccE-EEEEeCCeEEEEEec
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKH--IGTKFIKLDAENAPFF----VTKLG------IKTLPC-VIILRKGIAIDRLVG 171 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~--~~v~f~~i~~~~~~~l----~~~~~------i~~~Pt-l~~~~~G~~~~~~~G 171 (200)
|.+|.+.+.....+...-.++..-+ .++.|-.||+..++.. .++.+ -.+.|. -.+|.+|+.++.+..
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 4555566655666665555443322 3589999999887542 22221 112222 137788887777666
Q ss_pred cccCCCCCCCcHHHHHHHHH
Q 029057 172 FQDLGGKDDFTTKTLEVLLV 191 (200)
Q Consensus 172 ~~~~g~~~~~~~e~Le~~L~ 191 (200)
+...-. .+.|+.+|.
T Consensus 83 f~ea~E-----~~~L~~fL~ 97 (99)
T PF04908_consen 83 FEEANE-----NGELEEFLK 97 (99)
T ss_dssp HHHHHC-----TT-HHHHHT
T ss_pred HHHHHh-----hCHHHHHhC
Confidence 654211 245666664
No 304
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=41.92 E-value=1.6e+02 Score=22.53 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=24.2
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEeC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLDA 139 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~~ 139 (200)
.+..++|.=-|+.|+.-..--..|..|.++|.. ..++..-|
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPC 75 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPC 75 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecc
Confidence 344466666788888766444466666666643 44444444
No 305
>PRK04239 hypothetical protein; Provisional
Probab=40.97 E-value=27 Score=24.62 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029057 55 ELEKLHADRIAALKKEA 71 (200)
Q Consensus 55 ~le~~r~~R~~el~~~~ 71 (200)
+|+++|++|+.+|+...
T Consensus 2 ELe~IR~~rl~eLq~q~ 18 (110)
T PRK04239 2 ELEEIRRRKLEELQKQA 18 (110)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 68999999999998754
No 306
>PRK10387 glutaredoxin 2; Provisional
Probab=38.64 E-value=1.2e+02 Score=23.01 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=31.0
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
.++.+.|++|..+.-.++...-.| ....++...........+...+|+++. .+|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y---~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPV---ELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCe---EEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 345677999999887766654433 333333332221223334457999743 35644
No 307
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=38.25 E-value=66 Score=22.13 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=43.7
Q ss_pred EecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-------hHHHhCCCCCccEEEEEeCCeEEEEEec-cccCCCC
Q 029057 107 FYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-------FFVTKLGIKTLPCVIILRKGIAIDRLVG-FQDLGGK 178 (200)
Q Consensus 107 Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-------~l~~~~~i~~~Ptl~~~~~G~~~~~~~G-~~~~g~~ 178 (200)
|+.+.|..|+.....|++- ++.|-.+|..+.| .+...++.. +--++=+.|..... .| . ..
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~p~s~~el~~~l~~~~~~--~~~lin~~~~~~k~-l~~~----~~ 68 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKEPLSREELRELLSKLGNG--PDDLINTRSKTYKE-LGKL----KK 68 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS---HHHHHHHHHHHTSS--GGGGB-TTSHHHHH-TTHH----HC
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhCCCCHHHHHHHHHHhccc--HHHHhcCccchHhh-hhhh----hh
Confidence 6789999999988877753 5666677776653 344555532 11122244432111 12 1 12
Q ss_pred CCCcHHHHHHHHHHcCCcccC
Q 029057 179 DDFTTKTLEVLLVKKGIASAL 199 (200)
Q Consensus 179 ~~~~~e~Le~~L~~~~vi~~~ 199 (200)
..++.+++-.+|.++..|-..
T Consensus 69 ~~~s~~e~i~~l~~~p~LikR 89 (110)
T PF03960_consen 69 DDLSDEELIELLLENPKLIKR 89 (110)
T ss_dssp TTSBHHHHHHHHHHSGGGB-S
T ss_pred hhhhhHHHHHHHHhChhheeC
Confidence 466788888888888655433
No 308
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=37.35 E-value=97 Score=18.85 Aligned_cols=50 Identities=6% Similarity=0.015 Sum_probs=27.7
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC----CChhHHHhCCCCCccEEE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE----NAPFFVTKLGIKTLPCVI 158 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~----~~~~l~~~~~i~~~Ptl~ 158 (200)
.|+.+.|+.|....-.+....-. .....++.. ..+.+.+..+...+|++.
T Consensus 3 L~~~~~~~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLKGLD---YEYVPVNLLKGEQLSPAYRALNPQGLVPTLV 56 (73)
T ss_pred EecCCCCcchHHHHHHHHHcCCC---CeEEEecCccCCcCChHHHHhCCCCCCCEEE
Confidence 34455666777665555554332 344455542 234455556677899874
No 309
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=36.90 E-value=67 Score=26.01 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029057 56 LEKLHADRIAALKKEAE 72 (200)
Q Consensus 56 le~~r~~R~~el~~~~~ 72 (200)
|++|++.|..+-.....
T Consensus 155 LekIKkER~ee~~~~e~ 171 (244)
T PF04889_consen 155 LEKIKKERAEEKARKEE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887555443
No 310
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.34 E-value=1.2e+02 Score=22.79 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=43.8
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC---hhHHHhCCCCCccEEEEEeC
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA---PFFVTKLGIKTLPCVIILRK 162 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~---~~l~~~~~i~~~Ptl~~~~~ 162 (200)
++.-|=+=..+.|..--..+.+.+.++.++.++.|..+-. ..+|...||..+=++--|++
T Consensus 48 vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~ 110 (158)
T COG2077 48 VISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFRD 110 (158)
T ss_pred EEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhhh
Confidence 6667777788999999999999999999988888876542 34566666665544444433
No 311
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=35.19 E-value=1.2e+02 Score=19.16 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=31.3
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCC----CChhHHHhCCCCCccEEEE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAE----NAPFFVTKLGIKTLPCVII 159 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~----~~~~l~~~~~i~~~Ptl~~ 159 (200)
.+|...++.|+...-.+....-.| ....++.. ..+.+....+...+|++..
T Consensus 3 ~Ly~~~~~~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (81)
T cd03048 3 TLYTHGTPNGFKVSIMLEELGLPY---EIHPVDISKGEQKKPEFLKINPNGRIPAIVD 57 (81)
T ss_pred EEEeCCCCChHHHHHHHHHcCCCc---EEEEecCcCCcccCHHHHHhCcCCCCCEEEe
Confidence 455445699998887777765444 44445432 2244555566678999753
No 312
>PRK11752 putative S-transferase; Provisional
Probab=35.01 E-value=1.6e+02 Score=23.78 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=36.7
Q ss_pred EEEecCCChhhHHHHHHHHHH-hhhcCC--ceEEEEeCCC----ChhHHHhCCCCCccEEEE
Q 029057 105 CHFYHKEFYRCKIMDKHLKAL-APKHIG--TKFIKLDAEN----APFFVTKLGIKTLPCVII 159 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~l-a~~~~~--v~f~~i~~~~----~~~l~~~~~i~~~Ptl~~ 159 (200)
+.+|..+|+.|+...=.+.++ +...++ ..++.|+... .+.+.+-.....+|++..
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 456667799999988888874 444443 4556666533 345666667778999864
No 313
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=34.07 E-value=94 Score=22.30 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=17.8
Q ss_pred EEEEecCCChhhHHHHHHHHHH
Q 029057 104 ICHFYHKEFYRCKIMDKHLKAL 125 (200)
Q Consensus 104 vV~Fy~~~c~~C~~~~~~l~~l 125 (200)
+..|+.|.|..|+.....|++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4567789999999988877665
No 314
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=34.06 E-value=1.1e+02 Score=18.72 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=30.0
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC--hhHHHhCCCCCccEEEEEeCCe
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA--PFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~--~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
.+|.+.|+.|....=.+....-.| ....++.... +.+....+...+|++.. +|.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~---e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~ 58 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGVEY---EDVRITYEEWPELDLKPTLPFGQLPVLEI--DGK 58 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCCCc---EEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCE
Confidence 345577889998777776665444 3333443222 22233345567998753 454
No 315
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=32.70 E-value=2.7e+02 Score=24.98 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=23.1
Q ss_pred EEEEEecCCC-hhhHHHHHHHHHHhhhcCC--ceEEEEe
Q 029057 103 AICHFYHKEF-YRCKIMDKHLKALAPKHIG--TKFIKLD 138 (200)
Q Consensus 103 vvV~Fy~~~c-~~C~~~~~~l~~la~~~~~--v~f~~i~ 138 (200)
+||.||.+.- ..=..+...+..+..+|+. +.++.+.
T Consensus 284 ~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~ 322 (499)
T PF05679_consen 284 TVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK 322 (499)
T ss_pred EEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec
Confidence 7888887433 2233356677888888876 5555555
No 316
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=30.91 E-value=1.9e+02 Score=22.17 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=29.8
Q ss_pred EecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEE
Q 029057 107 FYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 107 Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
++.+.||.|+...-.+....-.| ..+.+.........+-.+...+|++.. .+|..+
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~---e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~l 58 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV---EKHVLLNDDEETPIRMIGAKQVPILQK-DDGRAM 58 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe---EEEECCCCcchhHHHhcCCCCcceEEe-eCCeEe
Confidence 45667999998776665554333 222222222222233334567998743 466543
No 317
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.89 E-value=1.1e+02 Score=24.51 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHhhhcCC-ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEE
Q 029057 113 YRCKIMDKHLKALAPKHIG-TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDR 168 (200)
Q Consensus 113 ~~C~~~~~~l~~la~~~~~-v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~ 168 (200)
.+|..+++.|+.++.++.. +.++--|++- +..|. -.++.+++|+.+.+
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDINf----AS~Ys----D~IVAlK~G~vv~~ 217 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDINF----ASCYS----DHIVALKNGKVVKQ 217 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecccH----HHhhh----hheeeecCCEEEec
Confidence 6899999999999999987 4444334332 23332 24678899998774
No 318
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=30.85 E-value=76 Score=24.54 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=18.3
Q ss_pred HHHhCCCCCccEEEEEeC-CeEEEEEecccc
Q 029057 145 FVTKLGIKTLPCVIILRK-GIAIDRLVGFQD 174 (200)
Q Consensus 145 l~~~~~i~~~Ptl~~~~~-G~~~~~~~G~~~ 174 (200)
-+.+.||.++|++++=.+ |. ...+.|-..
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Dr 200 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGK-TEMFFGSDR 200 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCC-ccceecCCc
Confidence 345679999999988542 32 224556554
No 319
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=30.60 E-value=2.9e+02 Score=22.23 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=41.4
Q ss_pred ceEEcChh--HHHHHHhCCCcEEEEEecCC------ChhhHHHHHHHHHHhhhcC-CceEEEEeCCCChhHHHh----CC
Q 029057 84 EYREIGEG--DFLAEVTGSEKAICHFYHKE------FYRCKIMDKHLKALAPKHI-GTKFIKLDAENAPFFVTK----LG 150 (200)
Q Consensus 84 ~v~~i~~~--~~~~~v~~~~~vvV~Fy~~~------c~~C~~~~~~l~~la~~~~-~v~f~~i~~~~~~~l~~~----~~ 150 (200)
....+++. ++...+ .++|-|.+|.+. -+.-..+...|++++..-+ ++++-.||.+..|...++ +|
T Consensus 8 k~ysLS~~T~~~L~~L--~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 8 KRYSLSDQTKKVLKSL--DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCccCCHHHHHHHHhC--CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 34555443 333333 235545444443 3344455556666666666 599999999888776666 88
Q ss_pred CCCcc
Q 029057 151 IKTLP 155 (200)
Q Consensus 151 i~~~P 155 (200)
|..++
T Consensus 86 i~~~~ 90 (271)
T PF09822_consen 86 IQPVQ 90 (271)
T ss_pred CCccc
Confidence 87644
No 320
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=30.49 E-value=2.5e+02 Score=21.70 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCceEEc-ChhHHHHHHhCCCcEEEEEecCCCh--hhH
Q 029057 60 HADRIAALKKEAEKRQVLQMKGHGEYREI-GEGDFLAEVTGSEKAICHFYHKEFY--RCK 116 (200)
Q Consensus 60 r~~R~~el~~~~~~~~~~~~~~~g~v~~i-~~~~~~~~v~~~~~vvV~Fy~~~c~--~C~ 116 (200)
-...+.+++..+-.+....... +..+ +-++|...+.+.+.+. +|||+ .|.
T Consensus 106 i~~ll~~i~~~l~~~A~~~~~~---~~~~~~~~e~~~~~~~~~~v~----~~wcg~~~~e 158 (202)
T cd00862 106 VPELLDEIQEDLYERALEFRDA---TRIVDTWEEFKEALNEKGIVL----APWCGEEECE 158 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---eEeeCCHHHHHHHHhcCCEEE----EEecCCHHHH
Confidence 3445666666654433322112 4445 6889988886643343 48886 554
No 321
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=30.28 E-value=1.5e+02 Score=25.36 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=41.4
Q ss_pred ChhhHHHH----HHHHHHhhhcCC----ceEEEEeCCCC-h--hHHHhCCCCC--ccEEEEEeCCeEEEEEeccccCCCC
Q 029057 112 FYRCKIMD----KHLKALAPKHIG----TKFIKLDAENA-P--FFVTKLGIKT--LPCVIILRKGIAIDRLVGFQDLGGK 178 (200)
Q Consensus 112 c~~C~~~~----~~l~~la~~~~~----v~f~~i~~~~~-~--~l~~~~~i~~--~Ptl~~~~~G~~~~~~~G~~~~g~~ 178 (200)
||.|.+.. ..+.++.+++.. +++.-+-|--| | .-...+|+.+ -|...+|++|+.+.++.+-.-
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~---- 339 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDI---- 339 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhH----
Confidence 88886543 344444444432 44444433222 1 1234566654 589999999999998655443
Q ss_pred CCCcHHHHHHHHHH
Q 029057 179 DDFTTKTLEVLLVK 192 (200)
Q Consensus 179 ~~~~~e~Le~~L~~ 192 (200)
.++|...+..
T Consensus 340 ----~eel~~~i~~ 349 (361)
T COG0821 340 ----VEELEALIEA 349 (361)
T ss_pred ----HHHHHHHHHH
Confidence 4555555544
No 322
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=30.07 E-value=40 Score=22.56 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=22.1
Q ss_pred EEecCC---Chhh--HHHHHHHHH---HhhhcCC--ceEEEEeCC
Q 029057 106 HFYHKE---FYRC--KIMDKHLKA---LAPKHIG--TKFIKLDAE 140 (200)
Q Consensus 106 ~Fy~~~---c~~C--~~~~~~l~~---la~~~~~--v~f~~i~~~ 140 (200)
.||+.| |..| ......|.+ -.+.||+ |+++.+|..
T Consensus 27 rywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 27 RFRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred ccHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 355554 5556 444445544 4677887 888888865
No 323
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=29.13 E-value=1.5e+02 Score=18.42 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=30.4
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC-hhHHHhCCCCCccEEEEEeCCe
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA-PFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~-~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
..+|.+-|+.|....-.+....-.| ....++.+.. +.+........+|++.. +|.
T Consensus 3 ~Ly~~~~~~~~~~v~~~L~~~~i~~---e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~ 58 (73)
T cd03076 3 TLTYFPVRGRAEAIRLLLADQGISW---EEERVTYEEWQESLKPKMLFGQLPCFKD--GDL 58 (73)
T ss_pred EEEEeCCcchHHHHHHHHHHcCCCC---EEEEecHHHhhhhhhccCCCCCCCEEEE--CCE
Confidence 3456667899988777776664443 3444443322 22222233456899743 554
No 324
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=29.03 E-value=1.4e+02 Score=22.32 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=30.1
Q ss_pred EEEEEecCCChhhHHHHHHHHHHhhhcCC--ceEEEEe
Q 029057 103 AICHFYHKEFYRCKIMDKHLKALAPKHIG--TKFIKLD 138 (200)
Q Consensus 103 vvV~Fy~~~c~~C~~~~~~l~~la~~~~~--v~f~~i~ 138 (200)
+.++++++.++-|..+.-.++.+|+.|.+ +.+-.+.
T Consensus 130 l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~ 167 (171)
T PF07700_consen 130 LTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVE 167 (171)
T ss_dssp EEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 88899999999999999999999999976 4444443
No 325
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=28.30 E-value=1.1e+02 Score=22.30 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=19.5
Q ss_pred cCCChhhHHHHHHHHHHhhhcCCceEEEE
Q 029057 109 HKEFYRCKIMDKHLKALAPKHIGTKFIKL 137 (200)
Q Consensus 109 ~~~c~~C~~~~~~l~~la~~~~~v~f~~i 137 (200)
-+-|+.|.. .+.++..+||++.+..+
T Consensus 105 ~~pC~SC~~---vi~qF~~~~pni~~~v~ 130 (133)
T PF14424_consen 105 LPPCESCSN---VIEQFKKDFPNIKVNVV 130 (133)
T ss_pred CCcChhHHH---HHHHHHHHCCCcEEEEe
Confidence 456888875 78888999999776544
No 326
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=27.46 E-value=1.7e+02 Score=18.61 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=26.6
Q ss_pred cCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHH---hCCCCCccEEEE
Q 029057 109 HKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVT---KLGIKTLPCVII 159 (200)
Q Consensus 109 ~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~---~~~i~~~Ptl~~ 159 (200)
.+||+.|.+..-.|....-.| .+..++......... .-+...+|++..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 63 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEY---KTVPVEFPDIPPILGELTSGGFYTVPVIVD 63 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCC---eEEEecCCCcccccccccCCCCceeCeEEE
Confidence 368999998887776654444 334444332221111 123457898743
No 327
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=27.35 E-value=1.1e+02 Score=28.02 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=35.8
Q ss_pred ChhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCChHHHHHHHHHHHHHHHHHH
Q 029057 2 DPDSVKSTLSNLAFGNVIAAAARDYQKELLDKEKAQASSSNDEVDLDELMDDPELEKLHADRIAALKKEA 71 (200)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dld~l~dd~~le~~r~~R~~el~~~~ 71 (200)
+-++|+++|..++|+.++.- .+.+.+.++ +..+.--..|-+-..-+-+|-+|++|+.-|..-.
T Consensus 482 sld~fkskl~~lsY~eil~i----rqsErl~qE---d~~s~pIleLkeKi~PeilELIkqqrLnrL~eGt 544 (713)
T KOG2999|consen 482 SLDQFKSKLETLSYREILRI----RQSERLSQE---DFQSPPILELKEKIQPEILELIKQQRLNRLVEGT 544 (713)
T ss_pred cHHHHHHHHHhccHHHHHHH----HHHHhhccc---cccCchHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Confidence 45789999999999966532 222222221 1111111223333345567888899988876543
No 328
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=26.09 E-value=84 Score=21.99 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=33.2
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHhhhcC--CceEEEEeCCC
Q 029057 99 GSEKAICHFYHKEFYRCKIMDKHLKALAPKHI--GTKFIKLDAEN 141 (200)
Q Consensus 99 ~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~--~v~f~~i~~~~ 141 (200)
++..++|.=.|+.|+.-. --..|.+|.++|. +..++.+-|+.
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 445577888899999988 6678999999997 47777777765
No 329
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=26.08 E-value=1.7e+02 Score=20.92 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=37.9
Q ss_pred EEecC--CChhhHHHHHHHHH----HhhhcC--C--ceEEEEeCCCChhHHHhCCCCCccEEEEEeCCeEEEEEecc
Q 029057 106 HFYHK--EFYRCKIMDKHLKA----LAPKHI--G--TKFIKLDAENAPFFVTKLGIKTLPCVIILRKGIAIDRLVGF 172 (200)
Q Consensus 106 ~Fy~~--~c~~C~~~~~~l~~----la~~~~--~--v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~~~~~~~G~ 172 (200)
|+-.+ .|.+|..-...+.+ ++..+. + +++-++.++.. .+...+ -.-|++.+ ||..+....|.
T Consensus 7 ~l~~~g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE~~l~~ 78 (120)
T PF10865_consen 7 HLDLDGKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIEDLLGA 78 (120)
T ss_pred EeecCCCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehhHhhCC
Confidence 33444 89999866655544 444443 2 77777877664 345555 46788555 88877544443
No 330
>PHA02151 hypothetical protein
Probab=26.06 E-value=40 Score=25.47 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=9.2
Q ss_pred EEEEEecCCCh
Q 029057 103 AICHFYHKEFY 113 (200)
Q Consensus 103 vvV~Fy~~~c~ 113 (200)
-.|+||..||.
T Consensus 206 ~~v~fy~kwct 216 (217)
T PHA02151 206 RYVHFYKKWCT 216 (217)
T ss_pred eEEEEehhhcc
Confidence 56899999995
No 331
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=25.99 E-value=2.1e+02 Score=19.23 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=30.8
Q ss_pred CCChhhHHHHHHHHHHhhhcCCceEEEEeCCCCh-hHHHhCCCCCccEEEEEeCCe
Q 029057 110 KEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAP-FFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 110 ~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~-~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
.+|+.|+...=.|... --...+..||....| .+.+......+|++. .+|.
T Consensus 20 g~cpf~~rvrl~L~eK---gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~ 70 (91)
T cd03061 20 GNCPFCQRLFMVLWLK---GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGE 70 (91)
T ss_pred CCChhHHHHHHHHHHC---CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCE
Confidence 6789998877555444 222455666665544 455556677899764 3554
No 332
>PHA02131 hypothetical protein
Probab=25.80 E-value=26 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.0
Q ss_pred CCCCCccEEEEEeCCeEEEE
Q 029057 149 LGIKTLPCVIILRKGIAIDR 168 (200)
Q Consensus 149 ~~i~~~Ptl~~~~~G~~~~~ 168 (200)
..-.++.|.+.|++|+++.-
T Consensus 24 h~~~g~~c~imfk~~~v~dc 43 (70)
T PHA02131 24 HYRFGISCWIMFKNDQVIDC 43 (70)
T ss_pred ceecceEEEEEEcCCCEEEe
Confidence 34467899999999998764
No 333
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=25.65 E-value=1.1e+02 Score=25.15 Aligned_cols=35 Identities=11% Similarity=-0.038 Sum_probs=25.6
Q ss_pred EEEEEecCCChhhH-HHHHHHHHHhhhcCCceEEEE
Q 029057 103 AICHFYHKEFYRCK-IMDKHLKALAPKHIGTKFIKL 137 (200)
Q Consensus 103 vvV~Fy~~~c~~C~-~~~~~l~~la~~~~~v~f~~i 137 (200)
++|.|.+++-..+. .+...-+.+.+.||+..+.+.
T Consensus 4 llvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~A 39 (262)
T PF06180_consen 4 LLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRA 39 (262)
T ss_dssp EEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 68899999988888 888888999999999666554
No 334
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=25.37 E-value=2.2e+02 Score=19.30 Aligned_cols=49 Identities=2% Similarity=-0.015 Sum_probs=34.1
Q ss_pred ChhHHHHHHhCCCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEE
Q 029057 89 GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKL 137 (200)
Q Consensus 89 ~~~~~~~~v~~~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i 137 (200)
+.+++.+.+....+-+|-|...+.+....+....+.+.+..|++.++--
T Consensus 39 ~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 39 PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG 87 (121)
T ss_dssp -HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4578888777676655667776777777777777777777788555544
No 335
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=24.96 E-value=1e+02 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.5
Q ss_pred CCCChhHHHhCCCCCccEEEEEeCCeE
Q 029057 139 AENAPFFVTKLGIKTLPCVIILRKGIA 165 (200)
Q Consensus 139 ~~~~~~l~~~~~i~~~Ptl~~~~~G~~ 165 (200)
.+..+.+.++|+|+.+|+++. ..|+.
T Consensus 171 fdQ~g~Lt~rF~I~~VPavV~-q~g~~ 196 (202)
T TIGR02743 171 FDQHGKLTQKFGIKHVPARVS-QEGLR 196 (202)
T ss_pred EcCCchHhhccCceeeceEEE-ecCCE
Confidence 456678999999999999876 55653
No 336
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=24.38 E-value=49 Score=28.34 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=32.9
Q ss_pred CceEEEEeCCCC-hh--HHHhCCCC-Ccc-EEEEEeCCeEEEEEeccccCCCCCCCcHHHHHHHHHHc
Q 029057 131 GTKFIKLDAENA-PF--FVTKLGIK-TLP-CVIILRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKK 193 (200)
Q Consensus 131 ~v~f~~i~~~~~-~~--l~~~~~i~-~~P-tl~~~~~G~~~~~~~G~~~~g~~~~~~~e~Le~~L~~~ 193 (200)
++++.-+=|--| |- --..||+. +-| ...+|++|+.+.+.+-.... .+.|.+.+.++
T Consensus 298 ~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~-------vd~L~~~I~~~ 358 (359)
T PF04551_consen 298 GLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEI-------VDELIELIEEH 358 (359)
T ss_dssp G-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCH-------HHHHHHHHHHH
T ss_pred CceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHH-------HHHHHHHHHhh
Confidence 377777766554 21 12346665 334 48899999999987444332 46666666553
No 337
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=23.57 E-value=5.1e+02 Score=22.75 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=51.0
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHh----CCCC-CccEEEEEeCCeEEEEEecccc
Q 029057 100 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTK----LGIK-TLPCVIILRKGIAIDRLVGFQD 174 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~----~~i~-~~Ptl~~~~~G~~~~~~~G~~~ 174 (200)
+++-|-.||+.....=......++.++++.+++.+-.+|..+++.+... ++-. -.|++. +.|...
T Consensus 342 s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs~~g~l~~e~ler~~~~~~~~sv~----------fCGP~~ 411 (438)
T COG4097 342 SDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDSSKDGYLDQEDLERYPDRPRTRSVF----------FCGPIK 411 (438)
T ss_pred cCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccCHHHhhccccccCcceEE----------EEcCHH
Confidence 4555566776555444555667899999999998888998888765332 2111 133432 356655
Q ss_pred CCCCCCCcHHHHHHHHHHcCC
Q 029057 175 LGGKDDFTTKTLEVLLVKKGI 195 (200)
Q Consensus 175 ~g~~~~~~~e~Le~~L~~~~v 195 (200)
. .+.|++-|.+.++
T Consensus 412 m-------~dsL~r~l~~~~~ 425 (438)
T COG4097 412 M-------MDSLRRDLKKQNV 425 (438)
T ss_pred H-------HHHHHHHHHHcCC
Confidence 4 5788888887765
No 338
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.06 E-value=94 Score=25.66 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=34.7
Q ss_pred EEEEEec-----CCChhhHHHHHHHHHHhhhcCCceEEEEeCCCC----hhHHHhCCC----CCccEEEEEeCCeEEE
Q 029057 103 AICHFYH-----KEFYRCKIMDKHLKALAPKHIGTKFIKLDAENA----PFFVTKLGI----KTLPCVIILRKGIAID 167 (200)
Q Consensus 103 vvV~Fy~-----~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~----~~l~~~~~i----~~~Ptl~~~~~G~~~~ 167 (200)
|||+|.+ .+...|..+..+|+.+. |++-.=|+.-+ ..|...++. ..+| .+|-+|+.++
T Consensus 133 VVvY~TsLRgvRkTfE~C~~VR~ilesf~-----V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LP--rVFV~GryIG 203 (281)
T KOG2824|consen 133 VVVYTTSLRGVRKTFEDCNAVRAILESFR-----VKVDERDVSMDSEFREELQELLGEDEKAVSLP--RVFVKGRYIG 203 (281)
T ss_pred EEEEEcccchhhhhHHHHHHHHHHHHhCc-----eEEEEecccccHHHHHHHHHHHhcccccCccC--eEEEccEEec
Confidence 7776654 34578888887777653 55544444433 334444443 4788 5677776554
No 339
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=22.85 E-value=2.1e+02 Score=20.51 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=25.1
Q ss_pred CCcEEEEEecCCChh-hHHHHHHHHHHhhhcCCceEEEEeC
Q 029057 100 SEKAICHFYHKEFYR-CKIMDKHLKALAPKHIGTKFIKLDA 139 (200)
Q Consensus 100 ~~~vvV~Fy~~~c~~-C~~~~~~l~~la~~~~~v~f~~i~~ 139 (200)
.+.++|.+|..+||. |..+..... ...|.+..|.++.-
T Consensus 6 ~G~i~IeL~~~~~P~~~~nF~~l~~--~~~Y~~~~f~rv~~ 44 (146)
T cd00317 6 KGRIVIELYGDEAPKTVENFLSLAR--GGFYDGTTFHRVIP 44 (146)
T ss_pred cCcEEEEEcCCCChHHHHHHHHHHh--cCCcCCCEEEEEeC
Confidence 366899999999985 444443222 22566788888853
No 340
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.71 E-value=1.4e+02 Score=22.46 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=22.4
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcC
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHI 130 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~ 130 (200)
.|+..-||.|-...+.|.++.++|+
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5778889999999999999999985
No 341
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.39 E-value=94 Score=23.19 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.2
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcC
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHI 130 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~ 130 (200)
.|+..-||.|-...+.+.++...++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 5778899999999999999988885
No 342
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=21.73 E-value=1.7e+02 Score=26.58 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEc-ChhHHHHHHhCCCc-----------------EEEEE--------ec
Q 029057 56 LEKLHADRIAALKKEAEKRQVLQMKGHGEYREI-GEGDFLAEVTGSEK-----------------AICHF--------YH 109 (200)
Q Consensus 56 le~~r~~R~~el~~~~~~~~~~~~~~~g~v~~i-~~~~~~~~v~~~~~-----------------vvV~F--------y~ 109 (200)
.+.|-..|..|+ |+|.+..+ |.-+|.+.+..+++ ++|.- +.
T Consensus 310 y~~~Da~~k~Ey-------------GYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n 376 (622)
T COG1148 310 YKPFDATRKEEY-------------GYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGN 376 (622)
T ss_pred ccccCcchhhhc-------------CCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCC
Confidence 445666666666 89998887 88888888864422 22322 34
Q ss_pred CCChh--hHHHHHHHHHHhhhcCC--ceEEEEeCCCCh
Q 029057 110 KEFYR--CKIMDKHLKALAPKHIG--TKFIKLDAENAP 143 (200)
Q Consensus 110 ~~c~~--C~~~~~~l~~la~~~~~--v~f~~i~~~~~~ 143 (200)
++|.. |......-..+.++||+ +.++.+|+....
T Consensus 377 ~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG 414 (622)
T COG1148 377 PYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFG 414 (622)
T ss_pred hhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccC
Confidence 44543 55666666667788987 788889986653
No 343
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=21.56 E-value=2.2e+02 Score=22.74 Aligned_cols=26 Identities=12% Similarity=-0.069 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHhhhcCCceEEEEeC
Q 029057 114 RCKIMDKHLKALAPKHIGTKFIKLDA 139 (200)
Q Consensus 114 ~C~~~~~~l~~la~~~~~v~f~~i~~ 139 (200)
.-..+.+.+.++|.+||+++|+-++.
T Consensus 64 ~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 64 TSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred CchhhhHHHHHHHHHCCCCEEEECCC
Confidence 44566788899999999999998875
No 344
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=21.54 E-value=1.5e+02 Score=23.48 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCCChhHHHhCCCCCccEEEEE-eCCeE
Q 029057 139 AENAPFFVTKLGIKTLPCVIIL-RKGIA 165 (200)
Q Consensus 139 ~~~~~~l~~~~~i~~~Ptl~~~-~~G~~ 165 (200)
.+....|.++|+|+.+|+++.- ..|+.
T Consensus 169 fdQ~G~Lt~rF~I~~VPAvV~~~q~G~~ 196 (209)
T PRK13738 169 FDQNGVLCQRFGIDQVPARVSAVPGGRF 196 (209)
T ss_pred EcCcchHHHhcCCeeeceEEEEcCCCCE
Confidence 4566779999999999998762 56654
No 345
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=21.52 E-value=1.7e+02 Score=18.31 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=20.0
Q ss_pred HhCCCCCccEEEEEeCCeEE-EEEeccccC
Q 029057 147 TKLGIKTLPCVIILRKGIAI-DRLVGFQDL 175 (200)
Q Consensus 147 ~~~~i~~~Ptl~~~~~G~~~-~~~~G~~~~ 175 (200)
..+.....|..++..||..+ +.+.|++.+
T Consensus 5 n~~r~~~~~Vtv~L~NG~~l~G~I~~fD~f 34 (61)
T cd01716 5 NAARKEKIPVTIYLVNGVQLKGQIESFDNF 34 (61)
T ss_pred HHHHHcCCcEEEEEeCCcEEEEEEEEEcce
Confidence 34556778999999998654 556677653
No 346
>PLN02473 glutathione S-transferase
Probab=20.90 E-value=3.8e+02 Score=20.30 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=34.0
Q ss_pred EEec-CCChhhHHHHHHHHHHhhhcCCceEEEEeCCC----ChhHHHhCCCCCccEEEEEeCCeEE
Q 029057 106 HFYH-KEFYRCKIMDKHLKALAPKHIGTKFIKLDAEN----APFFVTKLGIKTLPCVIILRKGIAI 166 (200)
Q Consensus 106 ~Fy~-~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~----~~~l~~~~~i~~~Ptl~~~~~G~~~ 166 (200)
.+|. +.|+.|+...=.+..+.-. ..++.++..+ .+.+........+|++. .+|..+
T Consensus 4 kLy~~~~s~~~~rv~~~L~e~gi~---ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--~~g~~l 64 (214)
T PLN02473 4 KVYGQIKAANPQRVLLCFLEKGIE---FEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE--DGDLKL 64 (214)
T ss_pred EEecCCCCCchHHHHHHHHHcCCC---ceEEEecCcccccCCHHHHhhCCCCCCCeEE--ECCEEE
Confidence 4444 5578888777666554333 3555666543 34555556777899985 467544
No 347
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=20.69 E-value=2e+02 Score=19.43 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhcCCceEEEEeCCCChhHHHhCC-CCCccEEEEE
Q 029057 118 MDKHLKALAPKHIGTKFIKLDAENAPFFVTKLG-IKTLPCVIIL 160 (200)
Q Consensus 118 ~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~-i~~~Ptl~~~ 160 (200)
....+..++.+... .+-++....|.+++. +.++|.+.+-
T Consensus 53 addci~~~~~~~~~----~~VaT~D~~Lr~~lr~~~GvPvi~l~ 92 (101)
T PF04900_consen 53 ADDCILDLAGKNNK----YIVATQDKELRRRLRKIPGVPVIYLR 92 (101)
T ss_pred HHHHHHHHhccCCe----EEEEecCHHHHHHHhcCCCCCEEEEE
Confidence 45567777765543 344677888988888 9999997775
No 348
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=20.46 E-value=2.2e+02 Score=17.38 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=25.1
Q ss_pred CCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCe
Q 029057 110 KEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGI 164 (200)
Q Consensus 110 ~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~ 164 (200)
++|+.|.+..-.+... ++.|-.++++... .-+...+|++.. +|.
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~ 57 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLEL--NGE 57 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEEE--CCE
Confidence 5899999988777654 3333333333211 112346998754 454
No 349
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=20.39 E-value=3.2e+02 Score=20.93 Aligned_cols=33 Identities=15% Similarity=-0.032 Sum_probs=23.6
Q ss_pred EEEecCCChhhHHHHHHHHHHhhhcCCceEEEE
Q 029057 105 CHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKL 137 (200)
Q Consensus 105 V~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i 137 (200)
..||.........+...|..+++.++++++..+
T Consensus 129 ~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 129 RLVHGARDPDDLYLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred EEEEecCChhhccCHHHHHHHHHHCCCeEEEEE
Confidence 446666666677778888888888888666544
No 350
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=20.26 E-value=4.5e+02 Score=20.86 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=38.9
Q ss_pred EEecCCChhhHHHHHHHHHHhhhcCCceEEEEeCCCChhHHH-hCCCCCccEEEEEeCCeEEE
Q 029057 106 HFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVT-KLGIKTLPCVIILRKGIAID 167 (200)
Q Consensus 106 ~Fy~~~c~~C~~~~~~l~~la~~~~~v~f~~i~~~~~~~l~~-~~~i~~~Ptl~~~~~G~~~~ 167 (200)
.=|+|+++.--.|...-..+.++-.++.+..++....+.... --+...+|...+..+|....
T Consensus 10 lG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~ 72 (211)
T PF02702_consen 10 LGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLE 72 (211)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEecc
Confidence 337899998888888888888777778888888766665533 34778899998888887554
No 351
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=20.22 E-value=25 Score=28.03 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=53.2
Q ss_pred cCCChhhHHHHHHHHHHhhhc---CCceEEEEeCCCChhHHHhCCCCCccEEEEEeCCe-EEEEEeccccCCC-CCCCcH
Q 029057 109 HKEFYRCKIMDKHLKALAPKH---IGTKFIKLDAENAPFFVTKLGIKTLPCVIILRKGI-AIDRLVGFQDLGG-KDDFTT 183 (200)
Q Consensus 109 ~~~c~~C~~~~~~l~~la~~~---~~v~f~~i~~~~~~~l~~~~~i~~~Ptl~~~~~G~-~~~~~~G~~~~g~-~~~~~~ 183 (200)
+.=|++|+..+--++++...+ |+++|+-+.-.+.+- .+.+---+.+++||- .-.+++|..+.-- +++.+.
T Consensus 46 aAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~G-----H~tGqsl~aL~~NGvd~~grIiGa~GaiPfleNi~~ 120 (225)
T PRK00964 46 AAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQG-----HITGQSLKALHENGVDDDGRIIGAKGAIPFLENVPD 120 (225)
T ss_pred ceeecccccccccHHHHHHHHhcCCCceEEEEecCccCC-----ccccHHHHHHHHcCCCCCCCCccCCCCCchhhcCCH
Confidence 444799998887777775543 679999887666420 111111223456664 4556777665433 467788
Q ss_pred HHHHHHHHHcCCcc
Q 029057 184 KTLEVLLVKKGIAS 197 (200)
Q Consensus 184 e~Le~~L~~~~vi~ 197 (200)
+.+++|.++..++.
T Consensus 121 ~aV~rFq~qVeivd 134 (225)
T PRK00964 121 EAVERFQEQIEIVD 134 (225)
T ss_pred HHHHHHHhheEEEe
Confidence 99999998876554
Done!