BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029058
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 112/172 (65%), Gaps = 3/172 (1%)
Query: 1 MAVSSLSL--NWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
MAVSSLS+ S T+S K + PN ++ S E N KRR
Sbjct: 1 MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60
Query: 58 LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
L+G G L A +PA L A+EIPK+Y FVDR DGYSY YPSDW EF+F HDS FKD
Sbjct: 61 QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120
Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQE 169
RYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E
Sbjct: 121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKE 172
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 51 ENKSKRRLLL-MGAGLLTANLLPANSL-FAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEF 108
++K +RRL++ G +LL L FA E K + A D D Y+++YP W E
Sbjct: 45 QDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVI 104
Query: 109 TGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQ 168
G D +KD L++V V +PT K+ + + GP +++ L + V A PNQ ++D
Sbjct: 105 EGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDAS 164
Query: 169 E 169
E
Sbjct: 165 E 165
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 42 CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI------PKNYDAFVDR 91
C + +E+N + RRL LL+GA + + + PA++ + + KN D
Sbjct: 37 CKAQQTHEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYS 96
Query: 92 IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
DG+ P+ W E E+ G ++D + N+ V PTDKK + D G EE +S
Sbjct: 97 GDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 156
Query: 149 NL 150
+
Sbjct: 157 QV 158
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 42 CPEDISSD-EENKS---KRRL---LLMGAGLLTANLLPANSLFAQ------EIPKNYDAF 88
C SSD +EN S RRL +L+G+ + + PAN+ + + + N D
Sbjct: 38 CRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFL 97
Query: 89 VDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE 145
DG++ + P+ W E EF G ++D + NV V PT KK + D G EE
Sbjct: 98 PYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157
Query: 146 VVSNL 150
+S +
Sbjct: 158 FLSTV 162
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 42 CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDR 91
C S +++N + RRL LL+GA + + + PA++ + + PK N D
Sbjct: 40 CKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYN 99
Query: 92 IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
DG+ P+ W E E+ G F+D + N+ V PTDKK + D G EE +S
Sbjct: 100 GDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 159
Query: 149 NL 150
+
Sbjct: 160 QV 161
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
tuberosum GN=PSBP PE=2 SV=1
Length = 260
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 44 EDISSDEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDG 94
+D +++ N RRL LL+G + + + PA++ + + PK N D DG
Sbjct: 40 QDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDG 99
Query: 95 YSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
+ P+ W E EF G ++D + N+ V PTDKK + D G EE +S +
Sbjct: 100 FKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKV 158
>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana
tabacum GN=PSBP3 PE=2 SV=1
Length = 266
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 36 CQNFFTCPEDISSDEENKSKRR--LLLMGAGLLTANLLPANSLFAQEI-----PKNYDAF 88
QN + P+ + + + S+R LL+GA + + + PA++ + + PK F
Sbjct: 39 AQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDF 98
Query: 89 VD-RIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPME 144
DG+ PS W E E+ G F+D + NV V PTDKK + D G E
Sbjct: 99 QTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPE 158
Query: 145 EVVSN----LARHVYAAPNQVADILDMQEVCI 172
+ +S L R Y+ + V I
Sbjct: 159 QFLSQVDYLLGRQAYSGKTDSEGGFESDAVAI 190
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK F DG+ PS W
Sbjct: 57 RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPN 116
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAAPN 159
E E+ G F+D + NV V PTDKK + D G E+ +S L R Y+
Sbjct: 117 KEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKT 176
Query: 160 QVADILDMQEVCI 172
+ V I
Sbjct: 177 DSEGGFESDAVAI 189
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA L + + PA++ + + PK N D DG+ PS W
Sbjct: 55 RRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPS 114
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
E EF G ++D + N+ V PTDKK + D G EE +S +
Sbjct: 115 KEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKV 161
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 49 DEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVY 99
D+ + RRL LL+GA + + + PA++ + + PK N D DG+
Sbjct: 2 DDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQV 61
Query: 100 PSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
P+ W E E+ G ++D + N+ V PTDKK + D G EE +S +
Sbjct: 62 PAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQV 115
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana
tabacum GN=PSBP1 PE=3 SV=2
Length = 268
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK N D DG+ P+ W
Sbjct: 60 RRLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPS 119
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
E EF G ++D + N+ V PTDKK + D G EE ++ +
Sbjct: 120 KEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQV 166
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK F+ DG+ + PS W
Sbjct: 59 RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPS 118
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
E EF G ++D + N+ V PTDKK + D G E+ +S +
Sbjct: 119 KEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQV 165
>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
lycopersicum GN=PSBP PE=2 SV=1
Length = 258
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 38 NFFTCPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDA 87
N C D N + RRL LL+G + + + PA++ + + PK N D
Sbjct: 31 NQLICRAQKQDDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDF 90
Query: 88 FVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPME 144
DG+ P+ W E E+ G ++D + N+ V PTDKK + D G E
Sbjct: 91 LPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150
Query: 145 EVVSNL 150
E +S +
Sbjct: 151 EFLSKV 156
>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus
pseudonarcissus GN=PSBP PE=2 SV=1
Length = 265
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 28 TRSATAFSCQN-----FFTCPE-DISSDEENKSKRRL---LLMGAGLLTANLLPANSLFA 78
TRSAT Q PE D +++ + RRL +L+G L + + A++ +
Sbjct: 23 TRSATNRDEQQQEHSARLQSPEADCATENDALLSRRLALTILIGGAALGSRVSAADAAYG 82
Query: 79 QEI-----PK-NYDAFVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRF 129
+ PK N D DG+ + PS W E EF G ++D + NV V
Sbjct: 83 ESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMV 142
Query: 130 IPTDKKDVHDLGPMEEVVSNL 150
PTDKK + D G E+ +S +
Sbjct: 143 NPTDKKSIKDYGSPEQFLSQV 163
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 55 KRRLLLMGAGLLTANLLPANSLFAQEIPKN--YDAFVDRIDGYSYVYPSDWTEFEFTGHD 112
+R+ ++MG LL + L+ + + + ++D DGYS+ YP +W + G D
Sbjct: 79 RRKSMMMG--LLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGAD 136
Query: 113 SGFKDRYLQLQNVRVRFIPTDKKD---VHDLGPMEEVVSNLARH 153
F+D + +N+ V F + + DLG EEV + R
Sbjct: 137 IFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQ 180
>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum
GN=PSBP PE=1 SV=1
Length = 259
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQ------EIPKNYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + + N D DG+ + P+ W
Sbjct: 51 RRLALSVLIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPS 110
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
E EF G ++D + NV V TDKK + D G EE +S +
Sbjct: 111 KEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKV 157
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 44 EDISSDEENKSKRRLL--LMGAGLLTANLLPANS-------LFAQEIPKNYDAFVDRIDG 94
E+ ++++ S+R L L+GA + + PA++ +F ++ + + G
Sbjct: 45 EETATNDAAISRRLALTVLIGAAAVGTKVSPADAAYGEAANVFGKQKSTEFSQYTG--PG 102
Query: 95 YSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
+ P+ W E E+ G ++D + N+ V PTDKK + D G EE +S +
Sbjct: 103 FKLSVPAKWNPSKEVEYPGQVLRYEDNFDTTSNLAVMVTPTDKKAITDYGAPEEFLSKV 161
>sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum
aestivum GN=PSBP PE=2 SV=1
Length = 258
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 83 KNYDAFVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHD 139
KN D +G+ + P+ W E EF G ++D + N+ V PT KK + D
Sbjct: 87 KNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITD 146
Query: 140 LGPMEEVVSNLA 151
G EE +S +
Sbjct: 147 YGSPEEFLSQVG 158
>sp|Q2A1K3|ACON_FRATH Aconitate hydratase OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=acn PE=3 SV=1
Length = 937
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 26 ELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNY 85
E S+T C NFF + + D + K R LL++G + T ++ PA + IP+ Y
Sbjct: 637 EFDSSSTYIQCPNFFEKFAEGNDDLDIKGARTLLMLGDSVTTDHISPAGA-----IPEEY 691
Query: 86 DA-------FVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRF 129
A V++ D SY E G + + R L L NV F
Sbjct: 692 PAGQYLKSHGVEKKDFNSYGSRRGNHEVMMRGTFANIRIRNLLLDNVEGGF 742
>sp|O30052|ISCS1_ARCFU Probable cysteine desulfurase 1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=iscS1 PE=3 SV=2
Length = 382
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVV--SNLARHVYAAPNQVADILDMQEVCIFYP 175
+YLQ Q V FIP DK DL +EE + + V A N++ I ++E+
Sbjct: 106 KYLQKQGFEVEFIPVDKYGTVDLEFIEEKIREDTILVSVQHANNEIGTIQPIKEISEIIN 165
Query: 176 G---FGYDMAASL 185
G D ASL
Sbjct: 166 GRAALHVDATASL 178
>sp|P11471|PSBP_CHLRE Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas
reinhardtii GN=PSBP PE=2 SV=1
Length = 245
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 93 DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGP----MEE 145
DG++ + P+ W E +F G ++D + + N+ V TDKK + D G +E
Sbjct: 81 DGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLES 140
Query: 146 VVSNLARHVYA---------APNQV--ADILDM 167
V L + Y+ APN+V A +LD+
Sbjct: 141 VSYLLGKQAYSGETQSEGGFAPNRVSAASLLDV 173
>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis
thaliana GN=PPD5 PE=1 SV=3
Length = 297
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 48 SDEENKSKRRLLLMGAGLLTANLLPANS--LFAQEIPK------NYDAFVDRIDGYSYVY 99
S E+ S+R L+L+G + LP +S A+E K VD I+ YSY Y
Sbjct: 47 SSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAY 106
Query: 100 PSDW--TEFEFTGHDSGFKDRYLQLQ----NVRVRFIPTDKKDVHD-------LGPMEEV 146
P D+ + F +S +RY + R+R + +++ D+ D +GP
Sbjct: 107 PLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIV-SERVDLTDNLVISISIGPPNSR 165
Query: 147 VSNLARHVYAAPNQVAD 163
+++ + ++A +VAD
Sbjct: 166 LTSKEKKTWSA-KEVAD 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,049,650
Number of Sequences: 539616
Number of extensions: 2995358
Number of successful extensions: 6311
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6293
Number of HSP's gapped (non-prelim): 23
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)