Query 029058
Match_columns 199
No_of_seqs 158 out of 219
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00042 photosystem II oxygen 100.0 1.4E-38 2.9E-43 278.2 11.8 164 30-197 29-231 (260)
2 PLN00059 PsbP domain-containin 100.0 4.1E-33 8.9E-38 244.4 13.5 139 40-182 65-216 (286)
3 PF01789 PsbP: PsbP; InterPro 99.9 2.8E-27 6.2E-32 194.5 7.4 126 70-196 8-146 (175)
4 PLN00067 PsbP domain-containin 99.9 3.8E-25 8.3E-30 193.7 11.4 143 51-196 40-235 (263)
5 PLN00066 PsbP domain-containin 99.9 7.4E-24 1.6E-28 186.2 12.0 145 51-196 42-230 (262)
6 PLN03152 hypothetical protein; 99.3 1.1E-11 2.3E-16 107.4 7.1 98 91-196 82-212 (241)
7 PF12712 DUF3805: Domain of un 90.3 0.44 9.6E-06 39.4 4.2 46 86-131 2-47 (153)
8 PF10518 TAT_signal: TAT (twin 61.3 6.3 0.00014 23.3 1.6 13 54-66 2-14 (26)
9 PF08006 DUF1700: Protein of u 47.5 11 0.00025 30.8 1.6 21 134-154 44-64 (181)
10 PF07174 FAP: Fibronectin-atta 47.4 11 0.00024 34.4 1.5 80 87-168 111-214 (297)
11 PF05757 PsbQ: Oxygen evolving 44.0 7.9 0.00017 33.5 0.1 21 40-61 16-36 (202)
12 TIGR02811 formate_TAT formate 42.4 28 0.0006 24.9 2.7 11 51-61 6-16 (66)
13 PF08786 DUF1795: Domain of un 41.7 26 0.00055 26.9 2.7 53 96-155 3-55 (130)
14 PLN02729 PSII-Q subunit 39.2 19 0.00041 31.7 1.7 28 52-80 48-76 (220)
15 PF12559 Inhibitor_I10: Serine 37.4 13 0.00027 26.2 0.3 12 94-105 44-55 (56)
16 PRK10123 wcaM putative colanic 36.6 58 0.0013 30.6 4.5 29 117-145 107-139 (464)
17 COG4709 Predicted membrane pro 35.0 20 0.00043 31.0 1.2 17 135-151 45-61 (195)
18 PRK10882 hydrogenase 2 protein 33.0 51 0.0011 30.4 3.5 10 54-63 1-10 (328)
19 COG4784 Putative Zn-dependent 25.2 46 0.001 31.8 1.9 42 75-116 274-318 (479)
20 PF12712 DUF3805: Domain of un 23.2 50 0.0011 27.5 1.5 28 77-104 11-38 (153)
21 PF10399 UCR_Fe-S_N: Ubiquitin 22.3 69 0.0015 20.9 1.8 12 50-61 5-16 (41)
22 PF12318 FAD-SLDH: Membrane bo 21.5 56 0.0012 27.1 1.5 22 144-165 108-132 (168)
23 PF10633 NPCBM_assoc: NPCBM-as 21.3 1.1E+02 0.0024 21.4 2.8 37 94-132 25-61 (78)
No 1
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=1.4e-38 Score=278.22 Aligned_cols=164 Identities=27% Similarity=0.416 Sum_probs=138.3
Q ss_pred ccccCCccceeeccCCCCcccccchhhHHHHH---HHHHHhhccCCCccccccc-----ccccccceeec-CCCeEEeec
Q 029058 30 SATAFSCQNFFTCPEDISSDEENKSKRRLLLM---GAGLLTANLLPANSLFAQE-----IPKNYDAFVDR-IDGYSYVYP 100 (199)
Q Consensus 30 ~~~~~~~~~~~~c~~~~~~~~~~~~~RR~aL~---g~aal~a~v~pa~aA~ae~-----~~~g~~~y~d~-~dGYsf~yP 100 (199)
.....++++ ++|++|.+ +...++||.+|+ |++++++.+.|+++||||+ +|+..+.|+++ +|||+|+||
T Consensus 29 ~~~~~~~~~-~~~~~~~~--~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~~dgY~FlyP 105 (260)
T PLN00042 29 AVSASRPSQ-VVCRAQEE--DNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVP 105 (260)
T ss_pred ccCCCCCcc-eeeecccc--ccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEeeCCCeEEecC
Confidence 344555555 69999876 345688998877 4445668899999999998 77777777776 599999999
Q ss_pred CCce---EeeecCCceeeeCcccCCcceEEEEecCCCCCcccCCCHHH----HHHHHHHHHhcCCC-----------Ccc
Q 029058 101 SDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE----VVSNLARHVYAAPN-----------QVA 162 (199)
Q Consensus 101 ~~W~---ev~~~G~dv~F~D~~~~~eNVsV~Ispv~~~sI~dfGsPee----vae~L~k~~~~~p~-----------~~a 162 (199)
++|+ |++++|+|++|+|++++++||||+|+|+++++|+|||+||| |+++|+++++++++ .++
T Consensus 106 ~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata 185 (260)
T PLN00042 106 SKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATA 185 (260)
T ss_pred CCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccce
Confidence 9996 77789999999999999999999999999999999999999 67788999998772 278
Q ss_pred eEEeeeeEeecCCcceeehhh------------hhhhhcccCceeee
Q 029058 163 DILDMQEVCIFYPGFGYDMAA------------SLLLQLPTGKVKLR 197 (199)
Q Consensus 163 ~Lida~er~~~y~~~~yd~~~------------~~~~~~~~~~~~~~ 197 (199)
+||++++|+. .|+.||+++. |.|+-.++..+||-
T Consensus 186 ~Lleas~re~-dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLY 231 (260)
T PLN00042 186 AVLESSTQEV-GGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLY 231 (260)
T ss_pred eEEEeeeEEe-CCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEE
Confidence 9999999987 6889999984 89999999988873
No 2
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=4.1e-33 Score=244.44 Aligned_cols=139 Identities=25% Similarity=0.383 Sum_probs=116.0
Q ss_pred eeccCCCCcccccchhhHHHHH-HH--HHHhhccCCCcccccccccccccceeecCCCeEEeecCCceEeeecCCceeee
Q 029058 40 FTCPEDISSDEENKSKRRLLLM-GA--GLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFK 116 (199)
Q Consensus 40 ~~c~~~~~~~~~~~~~RR~aL~-g~--aal~a~v~pa~aA~ae~~~~g~~~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~ 116 (199)
+.|..+.. ..-++.||++|+ +. +.+.........|+|. |+||+.|+|+.|||+|+||.||++|.+.|+|++|+
T Consensus 65 ~~~~~~~~--~~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFr 140 (286)
T PLN00059 65 INCLTDAK--QVCAVGRRKSMMMGLLMSGLIVSEANLPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFR 140 (286)
T ss_pred eecccchh--hhhhhhhhhhhHHHHHHHHHHHHhhcCchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCceEEe
Confidence 45665432 244789999975 22 1122222323356664 56899999999999999999999999999999999
Q ss_pred CcccCCcceEEEEecCC---CCCcccCCCHHHHHHHHHHHHhcCC-----C--CcceEEeeeeEeecCCcceeehh
Q 029058 117 DRYLQLQNVRVRFIPTD---KKDVHDLGPMEEVVSNLARHVYAAP-----N--QVADILDMQEVCIFYPGFGYDMA 182 (199)
Q Consensus 117 D~~~~~eNVsV~Ispv~---~~sI~dfGsPeevae~L~k~~~~~p-----~--~~a~Lida~er~~~y~~~~yd~~ 182 (199)
|+++.+|||||+|+|++ +++|+|||+|+|||++|+++++++| | ++++||+|++|++..|..|||++
T Consensus 141 D~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lE 216 (286)
T PLN00059 141 DPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVE 216 (286)
T ss_pred ccCccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEE
Confidence 99999999999999875 8999999999999999999999985 3 99999999999998999999998
No 3
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=99.94 E-value=2.8e-27 Score=194.48 Aligned_cols=126 Identities=31% Similarity=0.451 Sum_probs=103.4
Q ss_pred cCCCcccccccccccccceeecCCCeEEeecCCceEeeecCCceeeeCcccCCcceEEEEecCCCC-CcccCCCHHHHHH
Q 029058 70 LLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKK-DVHDLGPMEEVVS 148 (199)
Q Consensus 70 v~pa~aA~ae~~~~g~~~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~D~~~~~eNVsV~Ispv~~~-sI~dfGsPeevae 148 (199)
+.++..+.++..+.||+.|.|+++||+|+||++|+++++.|++++|+|+++.++||+|+|+|+... +|+|||+|+||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~ 87 (175)
T PF01789_consen 8 LSSANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAE 87 (175)
T ss_dssp --------STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHH
T ss_pred eccchhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHH
Confidence 344444555567899999999999999999999999999999999999999999999999999855 9999999999999
Q ss_pred HHHHHHhcCCC--CcceEEeeeeEeecCCcceeehhh----------hhhhhcccCceee
Q 029058 149 NLARHVYAAPN--QVADILDMQEVCIFYPGFGYDMAA----------SLLLQLPTGKVKL 196 (199)
Q Consensus 149 ~L~k~~~~~p~--~~a~Lida~er~~~y~~~~yd~~~----------~~~~~~~~~~~~~ 196 (199)
+|++..+++++ +.++||++.+|+.. |..||+++- |.|.-..+.++||
T Consensus 88 ~l~~~~~~~~~~~~~a~li~a~~~~~~-g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~l 146 (175)
T PF01789_consen 88 RLLNGELASPGSGREAELISASEREVD-GKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKL 146 (175)
T ss_dssp HHHHHCCCHCTSSEEEEEEEEEEEEET-TEEEEEEEEEEEETTEEEEEEEEEEEEETTEE
T ss_pred HHhhhhcccccCCcceEEEEeeeeecC-CccEEEEEEEeccCCCcccEEEEEEEEECCEE
Confidence 99999999888 99999999999998 777898872 6676666666665
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=99.92 E-value=3.8e-25 Score=193.67 Aligned_cols=143 Identities=20% Similarity=0.304 Sum_probs=109.2
Q ss_pred ccchhhHHHHHHHHHHhhc-cCCCccccccc---------cc--ccccceeec-C----------CCeEEeecCCceEee
Q 029058 51 ENKSKRRLLLMGAGLLTAN-LLPANSLFAQE---------IP--KNYDAFVDR-I----------DGYSYVYPSDWTEFE 107 (199)
Q Consensus 51 ~~~~~RR~aL~g~aal~a~-v~pa~aA~ae~---------~~--~g~~~y~d~-~----------dGYsf~yP~~W~ev~ 107 (199)
...+.||+.|.|+++...- .....++.|-+ .| .||-.|... . .||+|+||.||+|+.
T Consensus 40 ~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~ 119 (263)
T PLN00067 40 AVVIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTR 119 (263)
T ss_pred cchhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcc
Confidence 3457899999877653222 12222333322 22 256666543 1 489999999999988
Q ss_pred ec----C-----------CceeeeCcccCCcceEEEEecC------CCCCcccCCCHHHHHHHHHHHHhcCCCCcceEEe
Q 029058 108 FT----G-----------HDSGFKDRYLQLQNVRVRFIPT------DKKDVHDLGPMEEVVSNLARHVYAAPNQVADILD 166 (199)
Q Consensus 108 ~~----G-----------~dv~F~D~~~~~eNVsV~Ispv------~~~sI~dfGsPeevae~L~k~~~~~p~~~a~Lid 166 (199)
++ | +|++|+|++ ++||+|+|+|+ ++++|+|||+||||+++|++.+.++++++.+||+
T Consensus 120 Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eLLe 197 (263)
T PLN00067 120 VANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDELLE 197 (263)
T ss_pred ccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcceEE
Confidence 86 4 899999965 58999999998 4789999999999999999999998889999999
Q ss_pred eeeEeecCCcceeehhh---------hhhhhcccCceee
Q 029058 167 MQEVCIFYPGFGYDMAA---------SLLLQLPTGKVKL 196 (199)
Q Consensus 167 a~er~~~y~~~~yd~~~---------~~~~~~~~~~~~~ 196 (199)
+++|+. .|+.||+++. |.|+--++-.+||
T Consensus 198 As~re~-dGktYY~~E~~tp~a~~gRHnLataTV~~GkL 235 (263)
T PLN00067 198 TSVEKI-GDQTYYKYVLETPFALTGSHNLAKATAKGNTV 235 (263)
T ss_pred eeeEee-CCeEEEEEEEEecCCCCCceEEEEEEEECCEE
Confidence 999988 6899999883 7777666655555
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=99.91 E-value=7.4e-24 Score=186.24 Aligned_cols=145 Identities=16% Similarity=0.297 Sum_probs=113.4
Q ss_pred ccchhhHHHHHHHHHHh---hccCCCcc--c-c----------cccccccccceeecC-------------CCeEEeecC
Q 029058 51 ENKSKRRLLLMGAGLLT---ANLLPANS--L-F----------AQEIPKNYDAFVDRI-------------DGYSYVYPS 101 (199)
Q Consensus 51 ~~~~~RR~aL~g~aal~---a~v~pa~a--A-~----------ae~~~~g~~~y~d~~-------------dGYsf~yP~ 101 (199)
...++||.+|+..++++ +...|+.+ + + .++...||+.|..++ ..|+|+||.
T Consensus 42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~ 121 (262)
T PLN00066 42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQ 121 (262)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCC
Confidence 45789999998433331 12234222 1 2 233458899999885 349999999
Q ss_pred CceEeeec-----CCceeeeCcccCCcceEEEEecC--------CCCCcccCCCHHHHHHHHHHHHhcCCCCcceEEeee
Q 029058 102 DWTEFEFT-----GHDSGFKDRYLQLQNVRVRFIPT--------DKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQ 168 (199)
Q Consensus 102 ~W~ev~~~-----G~dv~F~D~~~~~eNVsV~Ispv--------~~~sI~dfGsPeevae~L~k~~~~~p~~~a~Lida~ 168 (199)
+|+|+.++ |+++.|++..+.++||+|+|+|+ ++++|+|||+||+|++.|++++++++.++++||+++
T Consensus 122 GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eLl~a~ 201 (262)
T PLN00066 122 GWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSME 201 (262)
T ss_pred CCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccceeEee
Confidence 99999887 54455555446889999999998 689999999999999999999999988999999999
Q ss_pred eEeecCCcceeehh--hhhhhhcccCceee
Q 029058 169 EVCIFYPGFGYDMA--ASLLLQLPTGKVKL 196 (199)
Q Consensus 169 er~~~y~~~~yd~~--~~~~~~~~~~~~~~ 196 (199)
+|+. .|+.||+++ -|.|+-.++.++||
T Consensus 202 ~re~-dGktYY~~E~~rH~LasaTV~~GrL 230 (262)
T PLN00066 202 VAEH-SGRTYYQFELPPHTLVTATAAGNRV 230 (262)
T ss_pred eeec-CCcEEEEEEEeCceEEEEEEECCEE
Confidence 9866 688899998 68888877777776
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.26 E-value=1.1e-11 Score=107.39 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=71.4
Q ss_pred cCCCeEEeecCCceEee----ec------C-------CceeeeCcccCCcceEEEEecC--------CCCCcccCCCHHH
Q 029058 91 RIDGYSYVYPSDWTEFE----FT------G-------HDSGFKDRYLQLQNVRVRFIPT--------DKKDVHDLGPMEE 145 (199)
Q Consensus 91 ~~dGYsf~yP~~W~ev~----~~------G-------~dv~F~D~~~~~eNVsV~Ispv--------~~~sI~dfGsPee 145 (199)
+++||++.||-+++.+- +. | -.+||..+ |.+|||||+|+|+ +.++|+|||+|+|
T Consensus 82 ~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~E 160 (241)
T PLN03152 82 YGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKE 160 (241)
T ss_pred hCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHH
Confidence 48999999999996431 11 1 24567665 8899999999997 5899999999999
Q ss_pred HHHHHHHHHhcCCC---CcceEEeeeeEeecCCcceeehh-----hhhhhhcccCceee
Q 029058 146 VVSNLARHVYAAPN---QVADILDMQEVCIFYPGFGYDMA-----ASLLLQLPTGKVKL 196 (199)
Q Consensus 146 vae~L~k~~~~~p~---~~a~Lida~er~~~y~~~~yd~~-----~~~~~~~~~~~~~~ 196 (199)
|++.|+ |++ +.++.++.++ ...+..||+++ -|.|+-.-+-.|||
T Consensus 161 Vgkv~v-----P~g~~~~saR~iel~~--E~dGKtYY~lEy~v~~RH~LaTVaVsrGKL 212 (241)
T PLN03152 161 AAKIFV-----PGGATLYSARTIKVKE--EEGIRTYYFYEFGRDEQHVALVATVNSGKA 212 (241)
T ss_pred HHHhhC-----CCcccccccceeeeee--ecCCceeEEEEEEeCCcEEEEEEEEcCCeE
Confidence 996664 554 2677777743 66678889988 45555555544444
No 7
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=90.26 E-value=0.44 Score=39.37 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=27.0
Q ss_pred cceeecCCCeEEeecCCceEeeecCCceeeeCcccCCcceEEEEec
Q 029058 86 DAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIP 131 (199)
Q Consensus 86 ~~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~D~~~~~eNVsV~Isp 131 (199)
+-|++|+.=|++.||.+|.|.+-..-...|.|+..=+.|..+..-.
T Consensus 2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk 47 (153)
T PF12712_consen 2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYK 47 (153)
T ss_dssp EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE
T ss_pred CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEe
Confidence 4688888899999999999998333455688888889998765443
No 8
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=61.28 E-value=6.3 Score=23.26 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHH
Q 029058 54 SKRRLLLMGAGLL 66 (199)
Q Consensus 54 ~~RR~aL~g~aal 66 (199)
++||+.|-+.+++
T Consensus 2 ~sRR~fLk~~~a~ 14 (26)
T PF10518_consen 2 LSRRQFLKGGAAA 14 (26)
T ss_pred CcHHHHHHHHHHH
Confidence 6899999854443
No 9
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=47.53 E-value=11 Score=30.81 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=17.0
Q ss_pred CCCcccCCCHHHHHHHHHHHH
Q 029058 134 KKDVHDLGPMEEVVSNLARHV 154 (199)
Q Consensus 134 ~~sI~dfGsPeevae~L~k~~ 154 (199)
..=+++||+|+|+|..+..+.
T Consensus 44 eeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 44 EEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHcCCHHHHHHHHHHhh
Confidence 345799999999999887654
No 10
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=47.44 E-value=11 Score=34.42 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=45.3
Q ss_pred ceeecCCCeEEeecCCceEeeec----CCceeeeCcc--------cCC-cceEEEEecCC---CCCcccCCCHHHHHHHH
Q 029058 87 AFVDRIDGYSYVYPSDWTEFEFT----GHDSGFKDRY--------LQL-QNVRVRFIPTD---KKDVHDLGPMEEVVSNL 150 (199)
Q Consensus 87 ~y~d~~dGYsf~yP~~W~ev~~~----G~dv~F~D~~--------~~~-eNVsV~Ispv~---~~sI~dfGsPeevae~L 150 (199)
++.+...||+|++|.||++-+-. |+.+.=+-.. .+. ++-+|+.-..| +.+.| -+-.+.+.+|
T Consensus 111 rvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae--~dn~kaa~rl 188 (297)
T PF07174_consen 111 RVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAE--PDNTKAAVRL 188 (297)
T ss_pred cccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEecccccccccccc--CChHHHHHHH
Confidence 45555689999999999865522 5444332211 111 34455555665 33332 3556777888
Q ss_pred HHH---HhcC-CC----CcceEEeee
Q 029058 151 ARH---VYAA-PN----QVADILDMQ 168 (199)
Q Consensus 151 ~k~---~~~~-p~----~~a~Lida~ 168 (199)
... ++-+ || |+...|++.
T Consensus 189 ~sdmgeffmp~pg~rinq~~~~l~~~ 214 (297)
T PF07174_consen 189 ASDMGEFFMPYPGTRINQETTPLDAN 214 (297)
T ss_pred hccccceeccCCCccccccccccccC
Confidence 763 3332 33 777777754
No 11
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=43.98 E-value=7.9 Score=33.49 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred eeccCCCCcccccchhhHHHHH
Q 029058 40 FTCPEDISSDEENKSKRRLLLM 61 (199)
Q Consensus 40 ~~c~~~~~~~~~~~~~RR~aL~ 61 (199)
+.|+++.+ ..+...+||.+|.
T Consensus 16 ~~vra~~~-~~~~~~~RRa~l~ 36 (202)
T PF05757_consen 16 VVVRASQS-PAQQQTSRRAVLG 36 (202)
T ss_dssp ----------------------
T ss_pred ceeccccC-cccccccHHHHHH
Confidence 35777652 3345678998875
No 12
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=42.42 E-value=28 Score=24.92 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=8.5
Q ss_pred ccchhhHHHHH
Q 029058 51 ENKSKRRLLLM 61 (199)
Q Consensus 51 ~~~~~RR~aL~ 61 (199)
...++||..|.
T Consensus 6 ~~~~sRR~Flk 16 (66)
T TIGR02811 6 KADPSRRDLLK 16 (66)
T ss_pred cCCccHHHHHH
Confidence 34578999887
No 13
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=41.70 E-value=26 Score=26.93 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=28.3
Q ss_pred EEeecCCceEeeecCCceeeeCcccCCcceEEEEecCCCCCcccCCCHHHHHHHHHHHHh
Q 029058 96 SYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVY 155 (199)
Q Consensus 96 sf~yP~~W~ev~~~G~dv~F~D~~~~~eNVsV~Ispv~~~sI~dfGsPeevae~L~k~~~ 155 (199)
+|..|.+|+...+ +.+++.|+....-|+.|...++... .+.+++.++.+++.-
T Consensus 3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l~~g-----~tl~~~~~~q~~~l~ 55 (130)
T PF08786_consen 3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPLPDG-----ETLEDYLQRQLAQLR 55 (130)
T ss_dssp EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE---TT-----S-HHHHHHHHHHHHH
T ss_pred eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccCCCC-----CCHHHHHHHHHHHHH
Confidence 5788999988753 3556677644445555555555422 366778887776653
No 14
>PLN02729 PSII-Q subunit
Probab=39.25 E-value=19 Score=31.67 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=16.3
Q ss_pred cchhhHHHHHHHHHHh-hccCCCccccccc
Q 029058 52 NKSKRRLLLMGAGLLT-ANLLPANSLFAQE 80 (199)
Q Consensus 52 ~~~~RR~aL~g~aal~-a~v~pa~aA~ae~ 80 (199)
-..+||.+|. .+|++ +.-+.+.+++||.
T Consensus 48 ~~~~rr~~lg-l~a~~l~~~s~~~~~~A~~ 76 (220)
T PLN02729 48 FQTTRRLALG-LASIALIGNSGNGVSLAED 76 (220)
T ss_pred hhhhHHHHHH-HHHHHHhcchhhhHHHhcc
Confidence 4678998884 43332 2223356677765
No 15
>PF12559 Inhibitor_I10: Serine endopeptidase inhibitors; InterPro: IPR022217 This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularise the molecule giving it its inhibitory conformation. ; PDB: 1IXU_A.
Probab=37.37 E-value=13 Score=26.20 Aligned_cols=12 Identities=50% Similarity=0.933 Sum_probs=4.0
Q ss_pred CeEEeecCCceE
Q 029058 94 GYSYVYPSDWTE 105 (199)
Q Consensus 94 GYsf~yP~~W~e 105 (199)
.++..||++|.|
T Consensus 44 ~~TlKyPSD~ee 55 (56)
T PF12559_consen 44 IQTLKYPSDWEE 55 (56)
T ss_dssp -----SS-SS--
T ss_pred CcceeCCCcccc
Confidence 489999999976
No 16
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=36.64 E-value=58 Score=30.58 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=20.9
Q ss_pred CcccCCcceEEEEecCC----CCCcccCCCHHH
Q 029058 117 DRYLQLQNVRVRFIPTD----KKDVHDLGPMEE 145 (199)
Q Consensus 117 D~~~~~eNVsV~Ispv~----~~sI~dfGsPee 145 (199)
+..-...|+.+.|...| .-.+.-||+..+
T Consensus 107 e~~g~~hnitldvrgsdc~ikgiamsgfgpvtq 139 (464)
T PRK10123 107 EEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQ 139 (464)
T ss_pred CCCceeeeEEEeeccCceEEeeeeecccCceeE
Confidence 34456788888888766 557788998654
No 17
>COG4709 Predicted membrane protein [Function unknown]
Probab=34.97 E-value=20 Score=31.05 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=13.4
Q ss_pred CCcccCCCHHHHHHHHH
Q 029058 135 KDVHDLGPMEEVVSNLA 151 (199)
Q Consensus 135 ~sI~dfGsPeevae~L~ 151 (199)
.=+.|||+|+|+|.-+.
T Consensus 45 EI~~~LG~P~eiA~ei~ 61 (195)
T COG4709 45 EIAKDLGDPKEIAAEIL 61 (195)
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 44789999999998443
No 18
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=33.04 E-value=51 Score=30.38 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=7.2
Q ss_pred hhhHHHHHHH
Q 029058 54 SKRRLLLMGA 63 (199)
Q Consensus 54 ~~RR~aL~g~ 63 (199)
++||..|.++
T Consensus 1 ~~RR~fl~~~ 10 (328)
T PRK10882 1 MNRRNFLKAA 10 (328)
T ss_pred CCHHHHHHHH
Confidence 4699999733
No 19
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=25.17 E-value=46 Score=31.81 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=29.8
Q ss_pred cccccccccccc---ceeecCCCeEEeecCCceEeeecCCceeee
Q 029058 75 SLFAQEIPKNYD---AFVDRIDGYSYVYPSDWTEFEFTGHDSGFK 116 (199)
Q Consensus 75 aA~ae~~~~g~~---~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~ 116 (199)
..||+.+.+||. .|.-++=|++|.||.||+--+.+...+.+.
T Consensus 274 ~lyGDSp~eGyvRgq~FlH~~Lg~tf~~P~Gf~IdN~~~Avlatg 318 (479)
T COG4784 274 LLYGDSPQEGYVRGQTFLHPELGVTFDVPDGFKIDNSAEAVLATG 318 (479)
T ss_pred cccCCCcccceecccceeccccceEEecCCceEecCchHHhhccC
Confidence 357777666764 577778899999999998666554444443
No 20
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=23.16 E-value=50 Score=27.50 Aligned_cols=28 Identities=29% Similarity=0.757 Sum_probs=17.1
Q ss_pred ccccccccccceeecCCCeEEeecCCce
Q 029058 77 FAQEIPKNYDAFVDRIDGYSYVYPSDWT 104 (199)
Q Consensus 77 ~ae~~~~g~~~y~d~~dGYsf~yP~~W~ 104 (199)
|.-.-|.++..|.|.++-|-|.=|..|+
T Consensus 11 FS~~YP~~W~EfED~E~sflFYnp~~WT 38 (153)
T PF12712_consen 11 FSMEYPADWNEFEDGEGSFLFYNPDQWT 38 (153)
T ss_dssp EEEEE-TT-EEE---TTEEEEE-SSS--
T ss_pred EEEecCCCcchhccCCcceEEEChHHhc
Confidence 3344688999999999999999999995
No 21
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=22.31 E-value=69 Score=20.94 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.8
Q ss_pred cccchhhHHHHH
Q 029058 50 EENKSKRRLLLM 61 (199)
Q Consensus 50 ~~~~~~RR~aL~ 61 (199)
+....+||..|.
T Consensus 5 ~~~~~~RRdFL~ 16 (41)
T PF10399_consen 5 EPVDPTRRDFLT 16 (41)
T ss_dssp -----HHHHHHH
T ss_pred CCCCchHHHHHH
Confidence 345678998885
No 22
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=21.45 E-value=56 Score=27.12 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcC---CCCcceEE
Q 029058 144 EEVVSNLARHVYAA---PNQVADIL 165 (199)
Q Consensus 144 eevae~L~k~~~~~---p~~~a~Li 165 (199)
.+++-.++.-||.+ ++..+++|
T Consensus 108 ~~~a~~Ii~aWY~G~vg~~~~a~~V 132 (168)
T PF12318_consen 108 QDLARAIISAWYLGVVGDGKDARVV 132 (168)
T ss_pred HHHHHHHHHHeeeEEEecCCCceEE
Confidence 67777888888864 34577777
No 23
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=21.26 E-value=1.1e+02 Score=21.38 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=15.7
Q ss_pred CeEEeecCCceEeeecCCceeeeCcccCCcceEEEEecC
Q 029058 94 GYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPT 132 (199)
Q Consensus 94 GYsf~yP~~W~ev~~~G~dv~F~D~~~~~eNVsV~Ispv 132 (199)
..++..|.||. +...+..+..=.+ .....+.+.|++-
T Consensus 25 ~~~l~~P~GW~-~~~~~~~~~~l~p-G~s~~~~~~V~vp 61 (78)
T PF10633_consen 25 SLSLSLPEGWT-VSASPASVPSLPP-GESVTVTFTVTVP 61 (78)
T ss_dssp EEEEE--TTSE----EEEEE--B-T-TSEEEEEEEEEE-
T ss_pred EEEEeCCCCcc-ccCCccccccCCC-CCEEEEEEEEECC
Confidence 57788999999 4333333221111 2345556666643
Done!