Query 029058
Match_columns 199
No_of_seqs 158 out of 219
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnj_A SLL1418 protein, putati 99.9 1.4E-26 4.8E-31 188.6 0.0 116 80-196 9-141 (170)
2 2xb3_A PSBP protein; photosynt 99.9 7.5E-25 2.6E-29 176.5 9.1 101 81-182 4-108 (165)
3 1v2b_A 23-kDa polypeptide of p 99.9 4.7E-25 1.6E-29 182.2 4.4 113 81-196 5-147 (177)
4 3hlz_A Uncharacterized protein 85.6 0.91 3.1E-05 39.3 4.7 69 86-165 5-73 (269)
5 1tu1_A Hypothetical protein PA 43.8 26 0.00088 26.7 4.2 55 92-154 8-64 (148)
6 2l5f_A PRE-mRNA-processing fac 35.8 51 0.0017 23.4 4.5 38 80-118 11-72 (92)
7 3ujm_A Rasputin; NTF2-like fol 24.3 19 0.00065 26.7 0.4 28 141-168 1-32 (120)
8 3rq0_A Glycosyl hydrolases fam 17.9 40 0.0014 28.8 1.1 54 53-106 6-63 (269)
9 2pq4_B Periplasmic nitrate red 17.6 53 0.0018 19.8 1.4 12 54-65 3-14 (35)
10 1jmq_A YAP65, 65 kDa YES-assoc 14.3 62 0.0021 19.9 1.1 21 99-119 9-29 (46)
No 1
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.86 E-value=1.4e-26 Score=188.63 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=102.0
Q ss_pred cccccccceeecCCCeEEeecCCceEeeec----CCceeeeCcccCCcceEEEEecCCC-CCcccCCCHHHHHHHHHHHH
Q 029058 80 EIPKNYDAFVDRIDGYSYVYPSDWTEFEFT----GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEVVSNLARHV 154 (199)
Q Consensus 80 ~~~~g~~~y~d~~dGYsf~yP~~W~ev~~~----G~dv~F~D~~~~~eNVsV~Ispv~~-~sI~dfGsPeevae~L~k~~ 154 (199)
+.|+||+.|.|+.|||+|+||++|++++++ |+|++|+|+++.++||+|+|+|+++ ++|+|||+||||+++|++++
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~ 88 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV 88 (170)
Confidence 367899999999999999999999999988 9999999999999999999999986 99999999999999999999
Q ss_pred hcCC--CCcceEEeeeeEeecCCcceeehh----------hhhhhhcccCceee
Q 029058 155 YAAP--NQVADILDMQEVCIFYPGFGYDMA----------ASLLLQLPTGKVKL 196 (199)
Q Consensus 155 ~~~p--~~~a~Lida~er~~~y~~~~yd~~----------~~~~~~~~~~~~~~ 196 (199)
+++| +++++||++.+|+ ..+..||+++ -|.|..+.+..+||
T Consensus 89 ~~~~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gkl 141 (170)
T 2lnj_A 89 NDASQGDRQAELINAEARD-EDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKL 141 (170)
Confidence 9998 4999999999995 4567778887 35555555555554
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.91 E-value=7.5e-25 Score=176.53 Aligned_cols=101 Identities=25% Similarity=0.400 Sum_probs=92.5
Q ss_pred ccccccceeecCCCeEEeecCCceEeeec-CCceeeeCcccCCcceEEEEecCCC-CCcccCCCHHHHHHHHHHHHhcCC
Q 029058 81 IPKNYDAFVDRIDGYSYVYPSDWTEFEFT-GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEVVSNLARHVYAAP 158 (199)
Q Consensus 81 ~~~g~~~y~d~~dGYsf~yP~~W~ev~~~-G~dv~F~D~~~~~eNVsV~Ispv~~-~sI~dfGsPeevae~L~k~~~~~p 158 (199)
.|+||+.|.|+.+||+|+||.+|++++++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+||+|+++|+++++++|
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~ 83 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS 83 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence 57899999999999999999999999998 9999999999999999999999985 999999999999999999999988
Q ss_pred --CCcceEEeeeeEeecCCcceeehh
Q 029058 159 --NQVADILDMQEVCIFYPGFGYDMA 182 (199)
Q Consensus 159 --~~~a~Lida~er~~~y~~~~yd~~ 182 (199)
++.++||++.+|+. .|+.||+++
T Consensus 84 ~~~~~~~l~~a~~r~~-~G~~yY~~E 108 (165)
T 2xb3_A 84 ESGRSSALIAATSQKA-DDKTYYILE 108 (165)
T ss_dssp TSSCEEEEEEEEEEEE-TTEEEEEEE
T ss_pred CCCcceEEEEeeeeec-CCceEEEEE
Confidence 49999999999955 567788876
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.90 E-value=4.7e-25 Score=182.16 Aligned_cols=113 Identities=26% Similarity=0.447 Sum_probs=89.3
Q ss_pred ccccccceeecCCCeEEeecCCceE---eeecCCceeeeCcccCCcceEEEEecCCCCCcccCCCHHHH----HHHHHHH
Q 029058 81 IPKNYDAFVDRIDGYSYVYPSDWTE---FEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEV----VSNLARH 153 (199)
Q Consensus 81 ~~~g~~~y~d~~dGYsf~yP~~W~e---v~~~G~dv~F~D~~~~~eNVsV~Ispv~~~sI~dfGsPeev----ae~L~k~ 153 (199)
.++||+.|. .|||+|+||++|++ ++++|+|++|+|+++.++||+|+|+|+++++|+|||+|++| +++|+++
T Consensus 5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~ 82 (177)
T 1v2b_A 5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQ 82 (177)
T ss_dssp --CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC---
T ss_pred CCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHH
Confidence 468899998 99999999999984 45679999999999999999999999999999999999994 6688899
Q ss_pred HhcCC---------C--CcceEEeeeeEeecCCcceeehh------------hhhhhhcccCceee
Q 029058 154 VYAAP---------N--QVADILDMQEVCIFYPGFGYDMA------------ASLLLQLPTGKVKL 196 (199)
Q Consensus 154 ~~~~p---------~--~~a~Lida~er~~~y~~~~yd~~------------~~~~~~~~~~~~~~ 196 (199)
+++++ + ++++||++.+|+. .|..||+.+ -|.|+-.++..+||
T Consensus 83 ~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~-~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkL 147 (177)
T 1v2b_A 83 AYSGKTDSEGGFESDAVAIANVLETSTAEV-GGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKL 147 (177)
T ss_dssp ---------------CCCEEEEEEEEEEEE-TTEEEEEEEEEEEC-----CCEEEEEEEEEETTEE
T ss_pred hhcccccccCCcccCcccceEEEEeEEEEe-CCeEEEEEEEEEecCCCCccccEEEEEEEEECCEE
Confidence 88762 2 7899999999998 778889887 25566666666665
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.59 E-value=0.91 Score=39.32 Aligned_cols=69 Identities=25% Similarity=0.328 Sum_probs=46.8
Q ss_pred cceeecCCCeEEeecCCceEeeecCCceeeeCcccCCcceEEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCCCcceEE
Q 029058 86 DAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADIL 165 (199)
Q Consensus 86 ~~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~D~~~~~eNVsV~Ispv~~~sI~dfGsPeevae~L~k~~~~~p~~~a~Li 165 (199)
+-|++|+.=|++.||++|.|++-..-.-.|.+|..=+.|..+.--. | -...+.-.+++.+.. +..++++
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk---------~-~~~yg~~~~~~El~e-n~sa~~v 73 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK---------G-NASYGKDAIRQELKE-NDSASLV 73 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE---------C-STTHHHHHHHHHHHH-CTTCEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc---------C-chhhHHHHHHHHHhc-CCCceEE
Confidence 5799999999999999999998654455688888888888755443 2 223445555555543 3444444
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=43.75 E-value=26 Score=26.72 Aligned_cols=55 Identities=7% Similarity=0.041 Sum_probs=29.9
Q ss_pred CCCeEEeecCCceEeeecCCceeeeCcccCC--cceEEEEecCCCCCcccCCCHHHHHHHHHHHH
Q 029058 92 IDGYSYVYPSDWTEFEFTGHDSGFKDRYLQL--QNVRVRFIPTDKKDVHDLGPMEEVVSNLARHV 154 (199)
Q Consensus 92 ~dGYsf~yP~~W~ev~~~G~dv~F~D~~~~~--eNVsV~Ispv~~~sI~dfGsPeevae~L~k~~ 154 (199)
-+.++|..|.+|+... .-+++-+...+. -||.|...+... =.+.+++.++-+++.
T Consensus 8 ~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~-----~~~l~~~~~~q~~~l 64 (148)
T 1tu1_A 8 LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQG-----DAPFADYVARQLENA 64 (148)
T ss_dssp CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCT-----TSCHHHHHHHHHHHH
T ss_pred ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCC-----CCCHHHHHHHHHHHH
Confidence 5789999999999543 333333321211 344444444432 145666666554443
No 6
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=35.82 E-value=51 Score=23.39 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=26.4
Q ss_pred cccccccceeecCCCeEEee------------------------cCCceEeeecCCceeeeCc
Q 029058 80 EIPKNYDAFVDRIDGYSYVY------------------------PSDWTEFEFTGHDSGFKDR 118 (199)
Q Consensus 80 ~~~~g~~~y~d~~dGYsf~y------------------------P~~W~ev~~~G~dv~F~D~ 118 (199)
..|.++..+.++ +|..|.| |.+|+++.-..--+.|.+.
T Consensus 11 ~lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~ 72 (92)
T 2l5f_A 11 GAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNS 72 (92)
T ss_dssp BTTTTEEEEECT-TSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEET
T ss_pred CCCCCcEEEEcC-CCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEEC
Confidence 357889999988 7888887 6789887544223455543
No 7
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=24.28 E-value=19 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHhc----CCCCcceEEeee
Q 029058 141 GPMEEVVSNLARHVYA----APNQVADILDMQ 168 (199)
Q Consensus 141 GsPeevae~L~k~~~~----~p~~~a~Lida~ 168 (199)
|+|++||+.+++++|. .|..-..++.-.
T Consensus 1 ~s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~ 32 (120)
T 3ujm_A 1 GSHMSVGREFVRQYYTLLNKAPNHLHRFYNHN 32 (120)
T ss_dssp ---CCHHHHHHHHHHHHHHHCGGGGGGGEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHhhheccc
Confidence 8999999999999884 343344455433
No 8
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis}
Probab=17.87 E-value=40 Score=28.83 Aligned_cols=54 Identities=28% Similarity=0.255 Sum_probs=13.9
Q ss_pred chhhHHHHHH-HHHHhhccCCCcccccccc-cccccceeecCCCe--EEeecCCceEe
Q 029058 53 KSKRRLLLMG-AGLLTANLLPANSLFAQEI-PKNYDAFVDRIDGY--SYVYPSDWTEF 106 (199)
Q Consensus 53 ~~~RR~aL~g-~aal~a~v~pa~aA~ae~~-~~g~~~y~d~~dGY--sf~yP~~W~ev 106 (199)
.+.||.+|.- .+++.+.++|...|.+.+. ++.--.|.|..||= +.+=+++|.-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~g~~lvw~DeF~g~~g~~~d~~~W~~~ 63 (269)
T 3rq0_A 6 NVDRRQMLLLSGLGATAAVLPVPRAAAVPNQTAASYVFADEFDGPAGSAPSAAKWTIA 63 (269)
T ss_dssp ----------------------------------CCSEEECCCSCTTCCCCTTTEEEC
T ss_pred hccchhHHHHHHHHHHHHhccchhcccCCCCCCCeEEEEecCCCCCCCCCCcccCEEe
Confidence 3668887762 2222223334333334332 22334778877663 34567788643
No 9
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=17.64 E-value=53 Score=19.79 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHH
Q 029058 54 SKRRLLLMGAGL 65 (199)
Q Consensus 54 ~~RR~aL~g~aa 65 (199)
++||+.|-+.++
T Consensus 3 lsRR~FLK~~aa 14 (35)
T 2pq4_B 3 LSRRSFMKANAV 14 (35)
T ss_dssp CCSHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 579999984433
No 10
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=14.26 E-value=62 Score=19.91 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=12.8
Q ss_pred ecCCceEeeecCCceeeeCcc
Q 029058 99 YPSDWTEFEFTGHDSGFKDRY 119 (199)
Q Consensus 99 yP~~W~ev~~~G~dv~F~D~~ 119 (199)
+|.||+++..++-...|-|-+
T Consensus 9 LP~GWe~~~~~~gr~y~~n~~ 29 (46)
T 1jmq_A 9 LPAGWEMAKTSSGQRYFKNHI 29 (46)
T ss_dssp CCTTBCCBCCSSCCCBEEETT
T ss_pred CCcCcEEEEcCCCceEEEEec
Confidence 789997765454444555543
Done!