BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029059
         (199 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A2N|B Chain B, Crystal Structure Of Ma-Icmt
          Length = 194

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 103 GRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVW 162
           G +++ I+++  ++ H+L+  G+Y  +RHP Y    +W +   I+L N +  I F  V W
Sbjct: 100 GNNWSAILEI--KDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLI-FGIVAW 156

Query: 163 H-FFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198
              +  R+  EE  L E FG  Y EY  +     P V
Sbjct: 157 AILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKV 193


>pdb|3SI9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
           Bartonella Henselae
 pdb|3SI9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
           Bartonella Henselae
 pdb|3SI9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
           Bartonella Henselae
 pdb|3SI9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
           Bartonella Henselae
          Length = 315

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 127 GFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRYEE 186
           G +   ++C F+ W +   I   +P+ T G +          +T+EE+  K    +  E+
Sbjct: 38  GAIDEKAFCNFVEWQITQGINGVSPVGTTGESPT--------LTHEEH--KRIIELCVEQ 87

Query: 187 YAQRVP 192
            A+RVP
Sbjct: 88  VAKRVP 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.142    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,644,010
Number of Sequences: 62578
Number of extensions: 205864
Number of successful extensions: 457
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 26
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 49 (23.5 bits)