BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029059
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93W54|ICMTB_ARATH Protein-S-isoprenylcysteine O-methyltransferase B OS=Arabidopsis
thaliana GN=ICMTB PE=1 SV=1
Length = 197
Score = 297 bits (760), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 141/197 (71%), Positives = 163/197 (82%)
Query: 3 MTEMFSYTACRQLSQMFFAVFFFHMSEYILAIAFHGSQSVTLRSLLISKNYILAMLFSMM 62
MTE+FS T RQL+QMF A+ FFH SEYILAIA HG+ VTL SLLISK+Y LAML S++
Sbjct: 1 MTEIFSDTGFRQLTQMFLAIIFFHTSEYILAIAIHGASKVTLSSLLISKHYALAMLISVL 60
Query: 63 EYIVEIVLFPGSKDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELIT 122
EYI EIV FPG K WWISN GL M+I GEI+RK+AI+TAGRSFTH+IK+ EEHH+L+T
Sbjct: 61 EYIAEIVFFPGLKQHWWISNFGLTMIILGEILRKTAIITAGRSFTHLIKIRREEHHKLVT 120
Query: 123 HGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGI 182
GVY +RHPSY GFLIWSVGTQ+MLCNP+S I FA VVW FFAERI YEE++LK+FFG
Sbjct: 121 EGVYQIMRHPSYSGFLIWSVGTQVMLCNPISAIAFAVVVWRFFAERIPYEEHYLKQFFGR 180
Query: 183 RYEEYAQRVPSGVPFVK 199
+Y EYAQRVPSGVPFV
Sbjct: 181 QYVEYAQRVPSGVPFVN 197
>sp|Q9FMW9|ICMTA_ARATH Protein-S-isoprenylcysteine O-methyltransferase A OS=Arabidopsis
thaliana GN=ICMTA PE=1 SV=1
Length = 197
Score = 284 bits (727), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/197 (68%), Positives = 166/197 (84%)
Query: 3 MTEMFSYTACRQLSQMFFAVFFFHMSEYILAIAFHGSQSVTLRSLLISKNYILAMLFSMM 62
MTE+FS T+ RQLSQM ++ FFH+SEYILAI HG+ +VTL SLLI+K+Y LAML S++
Sbjct: 1 MTEIFSDTSIRQLSQMLLSLIFFHISEYILAITIHGASNVTLSSLLITKHYALAMLLSLL 60
Query: 63 EYIVEIVLFPGSKDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELIT 122
EY+ EI+LFPG K WW+SN GL+M+I GEIIRK+AI+TAGRSFTH+IK+ +EEHH L+T
Sbjct: 61 EYLTEIILFPGLKQHWWVSNFGLIMIIVGEIIRKAAIITAGRSFTHLIKINYEEHHGLVT 120
Query: 123 HGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGI 182
HGVY +RHPSYCGFLIWSVGTQ+MLCNP+S + FA VVW FFA+RI YEEYFL +FFG+
Sbjct: 121 HGVYRLMRHPSYCGFLIWSVGTQVMLCNPVSAVAFAVVVWRFFAQRIPYEEYFLNQFFGV 180
Query: 183 RYEEYAQRVPSGVPFVK 199
+Y EYA+ V SGVPFV
Sbjct: 181 QYLEYAESVASGVPFVN 197
>sp|Q7XSR9|ICMT_ORYSJ Probable protein-S-isoprenylcysteine O-methyltransferase OS=Oryza
sativa subsp. japonica GN=ICMT PE=2 SV=2
Length = 191
Score = 249 bits (635), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/190 (60%), Positives = 153/190 (80%), Gaps = 1/190 (0%)
Query: 11 ACRQLSQMFFAVF-FFHMSEYILAIAFHGSQSVTLRSLLISKNYILAMLFSMMEYIVEIV 69
A R + +F A FH SEY+LA AFHG ++VT SLLISK Y+LAM F+M+E++ E +
Sbjct: 2 AARAQAWLFAAALVIFHGSEYVLAAAFHGRRNVTATSLLISKQYVLAMSFAMLEHLTEAL 61
Query: 70 LFPGSKDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFV 129
LFP K++W++S VGLVMVI GE+IRK A++TAGRSFTH+I++ +E+ H+LITHGVY +
Sbjct: 62 LFPELKEYWFVSYVGLVMVIIGEVIRKLAVVTAGRSFTHVIRIHYEDQHKLITHGVYRLM 121
Query: 130 RHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQ 189
RHP Y GFLIW+VGTQ+MLCNP+ST+ F V+W FF++RI YEE+FL++FFG YEEYAQ
Sbjct: 122 RHPGYSGFLIWAVGTQVMLCNPLSTVAFTLVLWRFFSKRIPYEEFFLRQFFGREYEEYAQ 181
Query: 190 RVPSGVPFVK 199
+V SG+PF++
Sbjct: 182 KVHSGLPFIE 191
>sp|A2XX73|ICMT_ORYSI Probable protein-S-isoprenylcysteine O-methyltransferase OS=Oryza
sativa subsp. indica GN=ICMT PE=3 SV=2
Length = 191
Score = 249 bits (635), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/190 (60%), Positives = 153/190 (80%), Gaps = 1/190 (0%)
Query: 11 ACRQLSQMFFAVF-FFHMSEYILAIAFHGSQSVTLRSLLISKNYILAMLFSMMEYIVEIV 69
A R + +F A FH SEY+LA AFHG ++VT SLLISK Y+LAM F+M+E++ E +
Sbjct: 2 AARAQAWLFAAALVIFHGSEYVLAAAFHGRRNVTATSLLISKQYVLAMSFAMLEHLTEAL 61
Query: 70 LFPGSKDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFV 129
LFP K++W++S VGLVMVI GE+IRK A++TAGRSFTH+I++ +E+ H+LITHGVY +
Sbjct: 62 LFPELKEYWFVSYVGLVMVIIGEVIRKLAVVTAGRSFTHVIRIHYEDQHKLITHGVYRLM 121
Query: 130 RHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQ 189
RHP Y GFLIW+VGTQ+MLCNP+ST+ F V+W FF++RI YEE+FL++FFG YEEYAQ
Sbjct: 122 RHPGYSGFLIWAVGTQVMLCNPLSTVAFTLVLWRFFSKRIPYEEFFLRQFFGREYEEYAQ 181
Query: 190 RVPSGVPFVK 199
+V SG+PF++
Sbjct: 182 KVHSGLPFIE 191
>sp|O12947|ICMT_XENLA Protein-S-isoprenylcysteine O-methyltransferase OS=Xenopus laevis
GN=icmt PE=2 SV=1
Length = 288
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 120/178 (67%), Gaps = 3/178 (1%)
Query: 24 FFHMSEYILAIAFHGSQSVTLRSLLI--SKNYILAMLFSMMEYIVEIVLFPGSKDFWWIS 81
FFH SEY L A + +S+++ S L+ S Y LA L S +E+ +E ++P K W+S
Sbjct: 106 FFHYSEY-LVTAMNNPRSLSIDSFLLNHSLEYTLAALSSWVEFTIETTIYPDLKQITWLS 164
Query: 82 NVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWS 141
+GL+MV+ GE++RK A+LTAG +F HI++ + H L+T GVY + RHPSY G+ WS
Sbjct: 165 VIGLIMVLFGEVLRKCAMLTAGSNFNHIVQNEKSDSHTLVTSGVYSWFRHPSYVGWFYWS 224
Query: 142 VGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFVK 199
+GTQ++LCNP+ +G+ W FF+ERI EE+ L FFG Y EY ++VP+G+PF+K
Sbjct: 225 IGTQVLLCNPLCLVGYTLASWRFFSERIEEEEFSLIHFFGENYLEYKKKVPTGLPFIK 282
>sp|O60725|ICMT_HUMAN Protein-S-isoprenylcysteine O-methyltransferase OS=Homo sapiens
GN=ICMT PE=1 SV=1
Length = 284
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 115/178 (64%), Gaps = 3/178 (1%)
Query: 24 FFHMSEYILAIAFHGSQSVTLRSLLI--SKNYILAMLFSMMEYIVEIVLFPGSKDFWWIS 81
FH SEY L A + +S++L S L+ S Y +A L S +E+ +E + +P K W+S
Sbjct: 102 LFHYSEY-LVTAVNNPKSLSLDSFLLNHSLEYTVAALSSWLEFTLENIFWPELKQITWLS 160
Query: 82 NVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWS 141
GL+MV+ GE +RK+A+ TAG +F H+++ + H L+T GVY + RHPSY G+ WS
Sbjct: 161 VTGLLMVVFGECLRKAAMFTAGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWS 220
Query: 142 VGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFVK 199
+GTQ+MLCNP+ + +A VW FF +R EE L FFG Y EY +RVP+G+PF+K
Sbjct: 221 IGTQVMLCNPICGVSYALTVWRFFRDRTEEEEISLIHFFGEEYLEYKKRVPTGLPFIK 278
>sp|Q9EQK7|ICMT_MOUSE Protein-S-isoprenylcysteine O-methyltransferase OS=Mus musculus
GN=Icmt PE=2 SV=2
Length = 283
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 115/178 (64%), Gaps = 3/178 (1%)
Query: 24 FFHMSEYILAIAFHGSQSVTLRSLLI--SKNYILAMLFSMMEYIVEIVLFPGSKDFWWIS 81
FH SEY L A + +S++L S L+ S Y +A L S +E+ +E + +P K W+S
Sbjct: 101 LFHYSEY-LVTAVNNPKSLSLDSFLLNHSLEYTVAALSSWIEFTLENIFWPELKQITWLS 159
Query: 82 NVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWS 141
GL+MV+ GE +RK+A+ TAG +F H+++ + H L+T GVY + RHPSY G+ WS
Sbjct: 160 ATGLLMVVFGECLRKAAMFTAGSNFNHVVQSEKSDTHTLVTSGVYAWCRHPSYVGWFYWS 219
Query: 142 VGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFVK 199
+GTQ+MLCNP+ + +A VW FF +R EE L FFG Y +Y +RVP+G+PF+K
Sbjct: 220 IGTQVMLCNPICGVVYALTVWRFFRDRTEEEEISLIHFFGEEYLDYKKRVPTGLPFIK 277
>sp|Q9WVM4|ICMT_RAT Protein-S-isoprenylcysteine O-methyltransferase (Fragment)
OS=Rattus norvegicus GN=Icmt PE=1 SV=1
Length = 232
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 119/195 (61%), Gaps = 3/195 (1%)
Query: 7 FSYTACRQLSQMFFAVFFFHMSEYILAIAFHGSQSVTLRSLLI--SKNYILAMLFSMMEY 64
FS ++ ++ FH SEY L + +S++L S L+ S Y +A L S +E+
Sbjct: 33 FSQSSWNHFGWYVCSLSLFHYSEY-LVTTVNNPKSLSLDSFLLNHSLEYTVAALSSWIEF 91
Query: 65 IVEIVLFPGSKDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHG 124
+E + +P K W+S GL+MVI GE +RK A+ TAG +F H+++ + H L+T G
Sbjct: 92 TLENIFWPELKQITWLSAAGLLMVIFGECLRKVAMFTAGSNFNHVVQSEKSDTHTLVTSG 151
Query: 125 VYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRY 184
VY + RHPSY G+ WS+GTQ+MLCNP+ + +A VW FF +R EE L FFG Y
Sbjct: 152 VYAWCRHPSYVGWFYWSIGTQVMLCNPICGVVYALTVWRFFRDRTEEEEISLIHFFGEEY 211
Query: 185 EEYAQRVPSGVPFVK 199
+Y +RVP+G+PF+K
Sbjct: 212 LDYKKRVPTGLPFIK 226
>sp|Q558K8|ICMT_DICDI Protein-S-isoprenylcysteine O-methyltransferase OS=Dictyostelium
discoideum GN=icmt-1 PE=2 SV=2
Length = 237
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 115/176 (65%), Gaps = 8/176 (4%)
Query: 25 FHMSEYILAIAFHGSQSVTLRSLLI--SKNYILAMLFSMMEYIVEIVLFPGSKDF--WWI 80
FHM EYI +H + ++ +S L+ S + +A+L S +E+ +E FP K F WW
Sbjct: 63 FHMWEYIWVTMYHPDK-LSSKSFLLNHSPQFNMALLISFIEFWIEWYFFPSLKTFSLWW- 120
Query: 81 SNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIW 140
VG + ++ G+I+R A+ TAG +FTH+++ + H L+T+G+Y ++RHPSY G+ +W
Sbjct: 121 --VGAICMVFGQIVRSVAMDTAGSNFTHLVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVW 178
Query: 141 SVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVP 196
SV TQ++L NP+S IGF + W FF++RI EE +L +FFG Y++Y + V SG+P
Sbjct: 179 SVSTQVILMNPISIIGFGWASWSFFSQRIENEEDYLIQFFGKSYKDYKKSVWSGIP 234
>sp|P87014|MAM4_SCHPO Protein-S-isoprenylcysteine O-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mam4 PE=3 SV=1
Length = 236
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 114/194 (58%), Gaps = 26/194 (13%)
Query: 25 FHMSEYILAIAFHGSQSVTLRSLLIS--KNYILAMLFSMMEYIVEIVLFPGSKDFWWISN 82
FH+ E+ + F GSQ ++ S +++ K Y LAML ++E L G K F + N
Sbjct: 48 FHLLEFYITARFQGSQ-LSWDSFILNNGKAYWLAMLVGLLE-----CLLSGGKSFAKVIN 101
Query: 83 V------------------GLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHG 124
L + G+ +R SA++ AG+SF+HI+ + H L+T G
Sbjct: 102 CLRFPSFLINFIFSVYQTSALGFLCLGQYLRSSAMVQAGQSFSHIVASKRNKDHLLVTDG 161
Query: 125 VYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRY 184
+Y +VRHPSY GF IW++GTQ++L N +ST+ F+ V+W FF++RIT EE +L FFG Y
Sbjct: 162 IYAYVRHPSYVGFFIWALGTQMLLGNFVSTLLFSLVLWKFFSQRITTEEAYLVSFFGDSY 221
Query: 185 EEYAQRVPSGVPFV 198
E+Y ++VPSG+P +
Sbjct: 222 EQYRKKVPSGIPLI 235
>sp|P32584|STE14_YEAST Protein-S-isoprenylcysteine O-methyltransferase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=STE14 PE=1
SV=1
Length = 239
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 116/201 (57%), Gaps = 9/201 (4%)
Query: 6 MFSYTACRQLSQMFFAVFFFHMSEYILAIAFHGSQSVTLRSLLIS--KNYILAMLFSMME 63
+F + + A+ FH EY + A + V S L++ K+Y+ A F+++E
Sbjct: 40 LFPQIRFKNFNLFIIALSLFHFLEYYIT-AKYNPLKVHSESFLLNNGKSYMAAHSFAILE 98
Query: 64 YIVEIVLFPGSKDFWW------ISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEH 117
+VE LFP K F + + +G ++VI G+ R A+ TAG SF+HI+K E
Sbjct: 99 CLVESFLFPDLKIFSYSLATKLCTVLGCLLVILGQYTRTIAMHTAGHSFSHIVKTKKESD 158
Query: 118 HELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLK 177
H L+ GVY + RHPSY GF W++GTQ++L NP+S + F FV+W FF++RI EE +L
Sbjct: 159 HVLVKTGVYSWSRHPSYLGFFWWAIGTQLLLLNPLSLVIFIFVLWKFFSDRIRVEEKYLI 218
Query: 178 EFFGIRYEEYAQRVPSGVPFV 198
EFF Y EY +V G+PF+
Sbjct: 219 EFFSAEYIEYKNKVGVGIPFI 239
>sp|P29940|YCB7_PSEDE Uncharacterized protein in cobO 3'region OS=Pseudomonas
denitrificans PE=3 SV=1
Length = 197
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 110 IKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERI 169
I + ++ L+T G+Y F R+P Y G + +GT + + N +S + A W + +I
Sbjct: 113 IGIPEKQDAPLVTSGLYAFSRNPIYVGMVTALIGTVMAVPNVIS-VALALSAWISISYQI 171
Query: 170 TYEEYFLKEFFGIRYEEYAQRV 191
EE L + FG Y Y +RV
Sbjct: 172 RMEETHLAKVFGDAYGAYCRRV 193
>sp|Q14739|LBR_HUMAN Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2
Length = 615
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 23/131 (17%)
Query: 78 WWISNVGLVMVIAGEII------RKSAIL--TAGRSFTHIIKVCHEEHHELITHGVYGFV 129
W ++++ +V+ + G +I +K+A + H+ + L+ G +GFV
Sbjct: 484 WPMASLIIVLKLCGYVIFRGANSQKNAFRKNPSDPKLAHLKTIHTSTGKNLLVSGWWGFV 543
Query: 130 RHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFF--------AERITYEEYFLKEFFG 181
RHP+Y G LI ++ + GF ++ +F+ R +EY K+ +G
Sbjct: 544 RHPNYLGDLIMALAWSL-------PCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYG 596
Query: 182 IRYEEYAQRVP 192
+ +E+Y QRVP
Sbjct: 597 VAWEKYCQRVP 607
>sp|Q5R7H4|LBR_PONAB Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1
Length = 615
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 105 SFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVW-- 162
H+ + L+ G +GF RHP+Y G LI ++ + C + + ++++
Sbjct: 519 KLAHLKTIHTSTGKNLLVSGWWGFARHPNYLGDLIMALAWSLA-CGFNHILPYFYIIYFT 577
Query: 163 HFFAERITYEEYFLKEFFGIRYEEYAQRVP 192
R +EY K+ +G+ +E+Y QRVP
Sbjct: 578 MLLVHREARDEYHCKKKYGVAWEKYCQRVP 607
>sp|O08984|LBR_RAT Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 SV=1
Length = 620
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 120 LITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWH--FFAERITYEEYFLK 177
L+ G +GFVRHP+Y G LI ++ + C + + +V++ R +E+ +
Sbjct: 539 LLVSGWWGFVRHPNYLGDLIMALAWS-LPCGFNHILPYFYVIYFTALLIHREARDEHQCR 597
Query: 178 EFFGIRYEEYAQRVPSGV-PFV 198
+G+ +E+Y QRVP + P++
Sbjct: 598 RKYGLAWEKYCQRVPYRIFPYI 619
>sp|P23913|LBR_CHICK Lamin-B receptor OS=Gallus gallus GN=LBR PE=1 SV=1
Length = 637
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 120 LITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWH--FFAERITYEEYFLK 177
L+ G +GFVRHP+Y G +I ++ + C + + +V++ R +E+ K
Sbjct: 527 LLVTGWWGFVRHPNYLGDIIMALAWSLP-CGFNHILPYFYVIYFICLLVHREARDEHHCK 585
Query: 178 EFFGIRYEEYAQRVP 192
+ +G+ +E Y QRVP
Sbjct: 586 KKYGLAWERYCQRVP 600
>sp|Q3U9G9|LBR_MOUSE Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2
Length = 626
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 120 LITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWH--FFAERITYEEYFLK 177
L+ G +GFVRHP+Y G LI ++ + C + + ++++ R +E+ +
Sbjct: 545 LLVSGWWGFVRHPNYLGDLIMALAWS-LPCGFNHLLPYFYIIYFTALLIHREARDEHQCR 603
Query: 178 EFFGIRYEEYAQRVP 192
+G+ +E+Y QRVP
Sbjct: 604 RKYGLAWEKYCQRVP 618
>sp|P94139|CZCN_RALME Cobalt-zinc-cadmium resistance protein CzcN OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=czcN PE=4 SV=2
Length = 216
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 61 MMEYIVEIVLFPGSK-DFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHE 119
++ +++ +LF S+ D W+S + L + + G ++ T GR + + + +++
Sbjct: 33 VVTFVLASLLFGHSRWDGTWVSPLLLTLGMLGV-----SLATVGRLWCALY-ISGRKNNT 86
Query: 120 LITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEF 179
L+T G Y RHP Y L+ +G M + T A + I E+ FL
Sbjct: 87 LVTSGPYSLCRHPLYVCNLLGILGLGAMTESLAVTAVLALAFALMYPAVIRTEDRFLASA 146
Query: 180 FGIRYEEYAQRVPSGVP 196
F + EYA+R P+ P
Sbjct: 147 FP-EFAEYARRTPAFFP 162
>sp|O76062|ERG24_HUMAN Delta(14)-sterol reductase OS=Homo sapiens GN=TM7SF2 PE=2 SV=3
Length = 418
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 HELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVW--HFFAERITYEEYF 175
+L+ G +G VRHP+Y G LI ++ + C + + ++++ R +E
Sbjct: 335 RKLLVSGWWGMVRHPNYLGDLIMALAWSLP-CGVSHLLPYFYLLYFTALLVHREARDERQ 393
Query: 176 LKEFFGIRYEEYAQRVP 192
+ +G+ ++EY +RVP
Sbjct: 394 CLQKYGLAWQEYCRRVP 410
>sp|Q71KT5|ERG24_MOUSE Delta(14)-sterol reductase OS=Mus musculus GN=Tm7sf2 PE=2 SV=2
Length = 418
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 118 HELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVW--HFFAERITYEEYF 175
+L+ G +G VRHP+Y G LI ++ + C + + +V++ R +E
Sbjct: 335 RQLLVSGWWGMVRHPNYLGDLIMALAWSLP-CGLSHLLPYFYVLYFTALLVHREARDEQQ 393
Query: 176 LKEFFGIRYEEYAQRVP 192
+ +G ++EY +RVP
Sbjct: 394 CLQKYGRAWQEYCKRVP 410
>sp|Q8WMV1|ERG24_BOVIN Delta(14)-sterol reductase OS=Bos taurus GN=TM7SF2 PE=1 SV=1
Length = 418
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 118 HELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVW--HFFAERITYEEYF 175
L+ G +G VRHP+Y G LI ++ + C + + + ++ R +E
Sbjct: 335 RRLLVSGWWGMVRHPNYLGDLIMALAWSLP-CGVFHLLPYFYFLYFTALLVHREDRDERQ 393
Query: 176 LKEFFGIRYEEYAQRVPSG-VPFV 198
++ +G+ + EY +RVP VP+V
Sbjct: 394 CRQKYGLAWHEYCRRVPYRIVPYV 417
>sp|Q44587|NCCN_ALCXX Nickel-cobalt-cadmium resistance protein NccN OS=Alcaligenes
xylosoxydans xylosoxydans GN=nccN PE=4 SV=1
Length = 213
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 65 IVEIVLFPGSK--DFWWIS----NVGLVMVIAGEIIRK-SAILTAGRSFTHIIKVCHEEH 117
+V I L G D WIS VG++ V + R A+ +GR T
Sbjct: 33 VVLIALITGHSQWDDTWISAALLTVGMLGVTMATVGRLWCALYISGRKST---------- 82
Query: 118 HELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLK 177
EL+T G Y RHP Y + VG M + A + I E++ L
Sbjct: 83 -ELVTTGPYSMCRHPLYVCNFVGIVGLGAMTESITLAAILALAFALMYPAVIRSEDHLLS 141
Query: 178 EFFGIRYEEYAQRVPSGVP 196
F +++YA+R P+ P
Sbjct: 142 RNFP-EFDDYARRTPAFFP 159
>sp|P54158|YPBQ_BACSU Uncharacterized protein YpbQ OS=Bacillus subtilis (strain 168)
GN=ypbQ PE=4 SV=1
Length = 168
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 53 YILAM-LFSMMEYIVEIVLFPGSKDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIK 111
YI+ M + + I E++L WW+ +++ + +I+R A+ + G + I
Sbjct: 42 YIITMHILFFLSLIAEVLLMNKQPSSWWLGIAAVILSV--QIVRYWALCSLGAYWNTKIL 99
Query: 112 VCHEEHHELITHGVYGFVRHPSYC 135
V EL+ G Y +++HP+Y
Sbjct: 100 VV--PGVELVKKGPYKWMKHPNYA 121
>sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA11 PE=3 SV=2
Length = 4499
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 40 QSVTLRSLLISKNYI----LAMLFSMMEYIVEIVLFPGSKDFWWISNVGLVMVIAGEIIR 95
+ + + ++L+++ ++ LA F+ + Y++E +L P W + + V+V+AG ++R
Sbjct: 1868 RQLIMENMLMAEGFVEAKMLAKKFASLYYLLEDLLSPQKHYDWGLRAIKSVLVVAGSLLR 1927
Query: 96 KSA 98
A
Sbjct: 1928 AEA 1930
>sp|B5FBC6|URE1_VIBFM Urease subunit alpha OS=Vibrio fischeri (strain MJ11) GN=ureC PE=3
SV=1
Length = 567
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 73 GSKDFWWISNVGLVMVIAGEIIR-KSAILTAGRSFTHIIKVCHEEHHELITHGVYGFV 129
G+ D NV +V+ A E++ + I+TAG THI +C ++ E +T GV F+
Sbjct: 100 GNPDVQ--PNVDIVVGPATEVVAGEGKIITAGGVDTHIHFICPQQAEEGLTSGVTTFI 155
>sp|Q5E728|URE1_VIBF1 Urease subunit alpha OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=ureC PE=3 SV=1
Length = 567
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 73 GSKDFWWISNVGLVMVIAGEIIR-KSAILTAGRSFTHIIKVCHEEHHELITHGVYGFV 129
G+ D NV +V+ A E++ + I+TAG THI +C ++ E +T GV F+
Sbjct: 100 GNPDVQ--PNVDIVVGPATEVVAGEGKIITAGGVDTHIHFICPQQAEEGLTSGVTTFI 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.142 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,261,249
Number of Sequences: 539616
Number of extensions: 2575723
Number of successful extensions: 6865
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6842
Number of HSP's gapped (non-prelim): 37
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.9 bits)