Query 029059
Match_columns 199
No_of_seqs 244 out of 1499
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2628 Farnesyl cysteine-carb 100.0 9.9E-50 2.2E-54 314.3 14.0 195 4-199 2-201 (201)
2 COG2020 STE14 Putative protein 100.0 6.5E-32 1.4E-36 217.4 17.5 123 74-198 63-185 (187)
3 PF04140 ICMT: Isoprenylcystei 99.9 2.5E-25 5.4E-30 160.4 10.3 90 86-178 3-94 (94)
4 COG1755 Uncharacterized protei 99.9 2.9E-24 6.3E-29 165.8 15.2 158 17-180 6-169 (172)
5 PF04191 PEMT: Phospholipid me 99.9 1.6E-24 3.4E-29 158.6 10.2 104 81-184 3-106 (106)
6 PF06966 DUF1295: Protein of u 99.8 1.1E-19 2.3E-24 151.2 18.7 108 78-191 118-235 (235)
7 COG3752 Steroid 5-alpha reduct 99.8 7.5E-20 1.6E-24 150.1 12.9 114 79-199 148-267 (272)
8 PF01222 ERG4_ERG24: Ergostero 99.7 1.4E-16 3E-21 142.8 12.2 113 85-198 308-431 (432)
9 KOG4650 Predicted steroid redu 99.6 2.8E-15 6.1E-20 123.1 11.3 114 81-197 177-295 (311)
10 KOG1435 Sterol reductase/lamin 99.6 8.8E-15 1.9E-19 128.4 8.3 114 85-199 304-428 (428)
11 PLN02392 probable steroid redu 99.3 2E-11 4.3E-16 102.5 10.4 111 78-198 149-259 (260)
12 PF02544 Steroid_dh: 3-oxo-5-a 99.1 1.7E-09 3.7E-14 84.1 12.7 110 79-198 40-149 (150)
13 KOG1638 Steroid reductase [Lip 99.0 7.1E-09 1.5E-13 85.3 12.4 111 78-198 146-256 (257)
14 PLN02560 enoyl-CoA reductase 98.9 1.1E-08 2.5E-13 88.2 12.0 113 80-198 193-308 (308)
15 PF07298 NnrU: NnrU protein; 98.8 1.2E-07 2.7E-12 76.6 12.4 98 75-193 64-161 (191)
16 PLN03164 3-oxo-5-alpha-steroid 98.6 3.1E-07 6.6E-12 79.2 10.7 113 79-198 209-322 (323)
17 KOG4142 Phospholipid methyltra 98.6 3.5E-07 7.5E-12 71.3 8.7 175 3-180 9-196 (208)
18 PLN02797 phosphatidyl-N-dimeth 98.0 5E-05 1.1E-09 58.6 9.0 69 82-151 67-135 (164)
19 COG4094 Predicted membrane pro 97.9 2.1E-05 4.5E-10 63.3 6.0 105 76-197 69-173 (219)
20 KOG1640 Predicted steroid redu 97.5 0.0023 5E-08 54.4 11.5 111 78-198 191-303 (304)
21 KOG1639 Steroid reductase requ 96.6 0.015 3.1E-07 48.7 8.7 74 120-198 223-297 (297)
22 PF05620 DUF788: Protein of un 55.7 99 0.0021 24.2 10.2 57 81-144 47-111 (170)
23 PHA01929 putative scaffolding 49.5 15 0.00033 31.2 2.6 22 171-192 155-176 (306)
24 COG3462 Predicted membrane pro 47.3 93 0.002 23.0 6.0 9 172-180 90-98 (117)
25 PRK12585 putative monovalent c 41.9 1.9E+02 0.0041 23.5 10.0 23 81-103 6-28 (197)
26 PF14147 Spore_YhaL: Sporulati 40.7 95 0.0021 19.7 5.9 29 159-187 12-44 (52)
27 TIGR00026 hi_GC_TIGR00026 deaz 38.1 22 0.00048 26.1 1.7 21 177-198 90-110 (113)
28 PF04075 DUF385: Domain of unk 31.6 40 0.00087 25.4 2.3 21 176-197 107-127 (132)
29 PF08764 Coagulase: Staphyloco 30.4 77 0.0017 27.3 4.0 25 165-189 60-84 (282)
30 PHA02547 55 RNA polymerase sig 26.3 2.5E+02 0.0053 22.5 5.8 29 150-180 92-120 (179)
31 PF07508 Recombinase: Recombin 23.7 29 0.00063 24.1 0.2 26 115-140 35-60 (102)
32 PHA02677 hypothetical protein; 23.0 2.1E+02 0.0046 20.9 4.5 27 165-192 15-41 (108)
33 PF02665 Nitrate_red_gam: Nitr 22.2 4.4E+02 0.0095 21.5 8.4 54 82-145 11-64 (222)
34 KOG3269 Predicted membrane pro 20.7 4.5E+02 0.0097 21.1 10.6 79 79-159 51-131 (180)
35 PF07325 Curto_V2: Curtovirus 20.3 41 0.00088 24.7 0.4 31 124-155 2-33 (126)
No 1
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-50 Score=314.31 Aligned_cols=195 Identities=49% Similarity=0.938 Sum_probs=186.2
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhcc--hHHHHHHHHHHHHHHHHHHhhcCCCchhHHHH
Q 029059 4 TEMFSYTACRQLSQMFFAVFFFHMSEYILAIAFHGSQSVTLRSLLI--SKNYILAMLFSMMEYIVEIVLFPGSKDFWWIS 81 (199)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~a~~n~~~~~~~s~l~--~~~y~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 81 (199)
...++...+.++++++++++.||.+|++.+ |.+|+++++.+||++ ++.|.+++..+++|++.|..++|.++..+|++
T Consensus 2 ~~~~~~~~~~~f~~~~lfls~Fh~se~~~t-a~~~~~tls~~sfll~~~~~y~la~~~s~lef~~e~~~fP~lk~~~~l~ 80 (201)
T KOG2628|consen 2 VTLFSPTEWMSFSWYFLFLSLFHISEYLVT-ALHNPSTLSLDSFLLNHSKGYWLAFLLSWLEFLLEILLFPSLKQNSWLW 80 (201)
T ss_pred eeeeCcchHHHHHHHHHHHHHHHHHHHHHH-hhcCccccchHHHHHhcchhHHHHHHHHHHHHHHHHHhCcchheeeeee
Confidence 345777788999999999999999999999 999999999999999 67999999999999999999999998776655
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 029059 82 N---VGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFA 158 (199)
Q Consensus 82 ~---~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~~~ 158 (199)
. .|+.++++|.++|..||.++|++++|.++.+|.++|+|||+|||+|+|||+|.|+++|++|+|+++.||+++++++
T Consensus 81 ~~~~~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~npis~v~f~ 160 (201)
T KOG2628|consen 81 SRIGLGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCNPISLVAFL 160 (201)
T ss_pred eeccCceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccCCC
Q 029059 159 FVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFVK 199 (199)
Q Consensus 159 ~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i~ 199 (199)
.+.|.++..||+.||+.|.+.||+||.||+||||..|||+|
T Consensus 161 ~V~w~ff~~Ri~~EE~~Li~fFg~~Y~eY~kkV~sGiPfi~ 201 (201)
T KOG2628|consen 161 LVVWRFFADRIKEEEKYLISFFGSSYVEYAKKVPSGIPFIK 201 (201)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHhCCcCCCCCC
Confidence 99999999999999999999999999999999999999986
No 2
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-32 Score=217.38 Aligned_cols=123 Identities=39% Similarity=0.610 Sum_probs=111.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHH
Q 029059 74 SKDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMS 153 (199)
Q Consensus 74 ~~~~~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~ 153 (199)
...+.+...+|.++..+|..++.|++.++|++++...+ ++++|++||+|||+++|||+|+|.+++.+|+++.++|++.
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~ 140 (187)
T COG2020 63 SLIPSWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVK--ARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLWA 140 (187)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccC--CCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHHH
Confidence 34567788899999999999999999999998655444 4889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccCC
Q 029059 154 TIGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 154 ~~~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
++.+..+.+.++..||+.||+.|+++|||||+||++||||+||.+
T Consensus 141 l~~~~~~~~~~~~~~i~~EEr~L~~~fg~~Y~~Y~~rV~r~iP~~ 185 (187)
T COG2020 141 LLIFVVLVALLFLFRIREEERYLRAEFGDEYREYRKRVPRLIPPL 185 (187)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhCCccCCCC
Confidence 887777776666899999999999999999999999999999986
No 3
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.93 E-value=2.5e-25 Score=160.39 Aligned_cols=90 Identities=46% Similarity=0.742 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhH--HHHHHHHHHHHH
Q 029059 86 VMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNP--MSTIGFAFVVWH 163 (199)
Q Consensus 86 ~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~--~~~~~~~~~~~~ 163 (199)
+++++|+.+|.||+.++|++||+++.. +++|++||+||||++|||||+|++++.+|.+.++.|+ .+++.+++..+.
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~--~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 80 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVII--QPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALVAWL 80 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--E--ETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEe--cCCCEEecccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 468999999999999999999999988 8899999999999999999999989988888777776 344444444544
Q ss_pred HHHHhHHHHHHHHHH
Q 029059 164 FFAERITYEEYFLKE 178 (199)
Q Consensus 164 ~~~~ri~~EE~~L~~ 178 (199)
+..||+.||+.|.|
T Consensus 81 -l~~RI~~EE~~L~~ 94 (94)
T PF04140_consen 81 -LFVRIREEERALIE 94 (94)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcC
Confidence 44999999999975
No 4
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.92 E-value=2.9e-24 Score=165.76 Aligned_cols=158 Identities=20% Similarity=0.311 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccchhcc-----hHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q 029059 17 QMFFAVFFFHMSEYILAIAFHGSQSVTLRSLLI-----SKNYILAMLFSMMEYIVEIVLFPGSKDFWWISNVGLVMVIAG 91 (199)
Q Consensus 17 ~~~~~~~~~~~~ef~~~~a~~n~~~~~~~s~l~-----~~~y~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~l~~~G 91 (199)
..++.++++|+.|.-.+ ++|+++...++..+ ++...++|.+..++..+|...-.. ..+|...+|++++++.
T Consensus 6 ~~i~~~~~iRL~~l~vs--i~nek~~~a~Ga~E~G~~n~~~l~ilH~~~yls~ivE~~~~~~--~f~~~~~~gl~~~l~s 81 (172)
T COG1755 6 SIILLFFVIRLVELKVS--IRNEKALIAKGAKEYGKTNYKLLVILHTAFYLSCIVEAWLNNT--FFNWLSIIGLALLLFS 81 (172)
T ss_pred HHHHHHHHHHHHHHHHH--HHhHHHHHHCcchhhCccccchHHHHHHHHHHHHHHHHHHhCC--ccccccHHHHHHHHHH
Confidence 35677888999999887 88999999888777 678889999999988888764433 2346678899999999
Q ss_pred HHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHH
Q 029059 92 EIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCG-FLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERIT 170 (199)
Q Consensus 92 ~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G-~~l~~~G~~l~~~~~~~~~~~~~~~~~~~~~ri~ 170 (199)
+.++.|++.++|+.||+++-. -++|++|++||||++|||||+- .+.+.+|.++.++.+.+.+++..+...++..||+
T Consensus 82 ~~ll~~vi~~LG~iWttki~i--lP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~~p~ya~~L~vRIr 159 (172)
T COG1755 82 QILLYWVIKSLGEIWTTKIMI--LPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLFSPIYALLLYVRIR 159 (172)
T ss_pred HHHHHHHHHHHhhhheeeEEE--eCCceeeccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999988 8999999999999999999999 7889999999999999888777767777899999
Q ss_pred HHHHHHHHHh
Q 029059 171 YEEYFLKEFF 180 (199)
Q Consensus 171 ~EE~~L~~~f 180 (199)
.||+.|.+-+
T Consensus 160 ~EekaL~~~~ 169 (172)
T COG1755 160 QEEKALAELF 169 (172)
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 5
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.92 E-value=1.6e-24 Score=158.60 Aligned_cols=104 Identities=31% Similarity=0.474 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 029059 81 SNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFV 160 (199)
Q Consensus 81 ~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~~~~~ 160 (199)
..+|++++++|..+..++..+++++++...+...++++++||+||||++|||+|+|.++..+|.++.++|++.++..++.
T Consensus 3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~ 82 (106)
T PF04191_consen 3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLA 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 56899999999999999999999988765443235677899999999999999999999999999999999976655444
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHH
Q 029059 161 VWHFFAERITYEEYFLKEFFGIRY 184 (199)
Q Consensus 161 ~~~~~~~ri~~EE~~L~~~fG~~Y 184 (199)
.......++..||+.|+++|||||
T Consensus 83 ~~~~~~~~~~~EE~~L~~~fG~~Y 106 (106)
T PF04191_consen 83 FLLYYIFIIRFEERFLERRFGEEY 106 (106)
T ss_pred HHHHHHHHHHhHHHHHHHHhCcCC
Confidence 444445566699999999999998
No 6
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=99.85 E-value=1.1e-19 Score=151.20 Aligned_cols=108 Identities=21% Similarity=0.387 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhH------
Q 029059 78 WWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNP------ 151 (199)
Q Consensus 78 ~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~------ 151 (199)
.+...+|++++++|..++..|+.|+.+. +.+++++++++++|+|+++|||||+|+.++++|+.+...+.
T Consensus 118 ~~~~~~g~~l~~~g~~~E~~AD~Q~~~f-----k~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~ 192 (235)
T PF06966_consen 118 NWLDILGIALFLIGFLLETVADQQKYRF-----KKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISSGSGWLW 192 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3567899999999999999999998754 23446778899999999999999999999999999887643
Q ss_pred HHHHHHHHHHHH-H-HHHhHHHHHHHHHHHhh--HHHHHHHhhC
Q 029059 152 MSTIGFAFVVWH-F-FAERITYEEYFLKEFFG--IRYEEYAQRV 191 (199)
Q Consensus 152 ~~~~~~~~~~~~-~-~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv 191 (199)
++++ .+++... + +...++..|+...++|| ++|+||||+|
T Consensus 193 ~~~~-~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 193 WAII-GPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRRT 235 (235)
T ss_pred HHHH-HHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhcC
Confidence 2332 2333222 2 23458999999999999 9999999997
No 7
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=99.83 E-value=7.5e-20 Score=150.08 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHH---
Q 029059 79 WISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTI--- 155 (199)
Q Consensus 79 ~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~--- 155 (199)
+..++|+++.++|+.++..++.|+..+. .+|+++.+++++|.+|++|||||+|+.+.+.|+.++.-+.+...
T Consensus 148 ~~d~~g~~iwivg~~fE~lgD~QL~~Fk-----~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~~~~W~~ 222 (272)
T COG3752 148 WWDVIGLAIWIVGIVFEALGDAQLWVFK-----KDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEWLLLWAV 222 (272)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-----hChhhccccccccceecccCcchHHHHHHHHHHHHHHHhhhhHhhhc
Confidence 4578999999999999999999997653 34689999999999999999999999999999988866544322
Q ss_pred HHHHHHHH--HHHHhHH-HHHHHHHHHhhHHHHHHHhhCCccccCCC
Q 029059 156 GFAFVVWH--FFAERIT-YEEYFLKEFFGIRYEEYAQRVPSGVPFVK 199 (199)
Q Consensus 156 ~~~~~~~~--~~~~ri~-~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i~ 199 (199)
..++.... .....++ .||++++++ ++|++|++||++++|+++
T Consensus 223 ~sPllmt~LL~~vSGvp~l~ekm~k~r--~~fr~Yq~rt~~F~P~~~ 267 (272)
T COG3752 223 ASPLLMTWLLVHVSGVPPLEEKMLKSR--PGFREYQRRTNAFFPRPP 267 (272)
T ss_pred ccHHHHHHHHHHhcCCChHHHHHhccc--HhHHHHHHHhcccCCCCC
Confidence 22222222 2345677 899999999 999999999999999975
No 8
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.70 E-value=1.4e-16 Score=142.79 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCcc--------ccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhh--hHHHH
Q 029059 85 LVMVIAGEIIRKSAILTAGRSFTH--------IIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLC--NPMST 154 (199)
Q Consensus 85 ~~l~~~G~~l~~~a~~~lg~~~t~--------~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~--~~~~~ 154 (199)
.++.++|..+...|..|..+..+. .-..+.+++++|.++|.|+++|||||+|+++..+++++.++ +++..
T Consensus 308 ~~l~~~gy~i~r~sn~QK~~FR~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf~~~~py 387 (432)
T PF01222_consen 308 LALGLVGYYIFRGSNSQKNRFRRNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGFSSILPY 387 (432)
T ss_pred HHHHHHHHHHHHHhchhHHHhcCCCCCCcccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhcCccHHH
Confidence 456788999999998886544311 00112256789999999999999999999999999988776 33322
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCC-ccccCC
Q 029059 155 IGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVP-SGVPFV 198 (199)
Q Consensus 155 ~~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~-~~iP~i 198 (199)
.+++....++..|..++|+.+++|||++|++||++|| |+||+|
T Consensus 388 -fy~~~~~~lL~hR~~RD~~rC~~KYG~~W~~Yc~~Vpy~~iP~i 431 (432)
T PF01222_consen 388 -FYPIFFTILLIHRARRDEERCRKKYGKDWDEYCKRVPYRIIPGI 431 (432)
T ss_pred -HHHHHHHHHHhhhHHHHHHHHHHhhCHHHHHHHHhCCEEEeCCc
Confidence 3455555677899999999999999999999999999 999997
No 9
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=99.63 E-value=2.8e-15 Score=123.13 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhH-----HHHH
Q 029059 81 SNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNP-----MSTI 155 (199)
Q Consensus 81 ~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~-----~~~~ 155 (199)
..+|..++++|.+++..|+.|.-+.-+.+-+.+ ..+..-+++|.+||+|||||+|+.++++|+-+...+. +.++
T Consensus 177 D~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~-~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~~~egl~wtvi 255 (311)
T KOG4650|consen 177 DVIGWTMWVFGFVIEALADQQKLSFKEARYDLE-NLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAPVLEGLEWTVI 255 (311)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHH-HcCCccccccceeeccCccHHHHHHHHHHHHHHHhhhhccchHHHH
Confidence 788999999999999999998776654443331 2333499999999999999999999999987765432 4444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccC
Q 029059 156 GFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPF 197 (199)
Q Consensus 156 ~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~ 197 (199)
+..+.. ..+..-...-|+...+++ +.|+.|||+|.++||+
T Consensus 256 ~~lv~~-~~l~~~t~lie~~~v~~~-~aYR~Yqktts~~ip~ 295 (311)
T KOG4650|consen 256 AGLVFL-TLLLLFTSLIELLEVEKY-PAYRVYQKTTSRFIPR 295 (311)
T ss_pred HHHHHH-HHHHHHHhhhhhhhhhhh-HHHHHHHhcccccccc
Confidence 433333 334445566677777777 6999999999999995
No 10
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.56 E-value=8.8e-15 Score=128.42 Aligned_cols=114 Identities=23% Similarity=0.383 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCccc--------cccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhh--hHHHH
Q 029059 85 LVMVIAGEIIRKSAILTAGRSFTHI--------IKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLC--NPMST 154 (199)
Q Consensus 85 ~~l~~~G~~l~~~a~~~lg~~~t~~--------i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~--~~~~~ 154 (199)
.++.+.|..+..-|..|..+..... ..+...++++|.+||.|+++|||||+|+++..+.+++-++ +++.-
T Consensus 304 ~~l~l~gyyifr~an~QK~~FRkn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf~s~lpy 383 (428)
T KOG1435|consen 304 LVLLLLGYYIFRGANAQKNEFRKNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGFNSPLPY 383 (428)
T ss_pred HHHHHhheeEeeccchhHHHHhcCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccCCCCcch
Confidence 3567788888888888766544321 0111255899999999999999999999999998888765 55433
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCC-ccccCCC
Q 029059 155 IGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVP-SGVPFVK 199 (199)
Q Consensus 155 ~~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~-~~iP~i~ 199 (199)
.+++....++..|..+.|..+++|||+++++||++|| |++|+|.
T Consensus 384 -fy~iyf~~LLvhR~~RDe~rC~~KYG~~W~~Yc~~VpyriiP~Vy 428 (428)
T KOG1435|consen 384 -FYPIYFTLLLVHRAARDEHRCRSKYGEDWEEYCRKVPYRILPYVY 428 (428)
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHhhCCcccCCCCC
Confidence 2345555667899999999999999999999999999 9999873
No 11
>PLN02392 probable steroid reductase DET2
Probab=99.29 E-value=2e-11 Score=102.48 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHHHH
Q 029059 78 WWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGF 157 (199)
Q Consensus 78 ~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~~ 157 (199)
++...+|+++++.|..++..++.++.+-. . +.+++++-+.|.|+++.+|||+|+++.++|++++++++.+.+ +
T Consensus 149 ~~~~~iG~~lF~~g~~~N~~sh~~L~~LR-----k-~g~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s~~~~~-F 221 (260)
T PLN02392 149 WWRFFGGLVVFLWGMRINVWSDRVLVGLK-----R-EGGGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWSWAGFG-F 221 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c-CCCeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34578899999999999999999986421 1 135678899999999999999999999999999998765543 3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccCC
Q 029059 158 AFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 158 ~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
.+.....+..|...-.+..+|+|||||. ++.+++|||+
T Consensus 222 ~~~~~~nl~~rA~~~hkwY~~kFg~~yp---k~RkaiIPfi 259 (260)
T PLN02392 222 FLYTCSNLVPRACANHKWYLEKFGEDYP---KGRKAVIPFL 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccc---CCCeEecCcc
Confidence 3344444567777777888899998654 5668999997
No 12
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.12 E-value=1.7e-09 Score=84.15 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 029059 79 WISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFA 158 (199)
Q Consensus 79 ~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~~~ 158 (199)
+...+|++++++|......++.++.+-.+ +.+++.++-+.|.|+++..|||+++++.++|+.++++++.+.+ +.
T Consensus 40 ~~~~~g~~lf~~g~~~n~~~h~~L~~lr~-----~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~~~~-f~ 113 (150)
T PF02544_consen 40 PRFIIGLALFLIGSIGNFYSHLILANLRK-----PGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGSWPSYA-FA 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhhhhhHH-HH
Confidence 34678999999999999999999974322 2356788999999999999999999999999999998765443 33
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccCC
Q 029059 159 FVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 159 ~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
+.....+..|...--+.-+++| +||.++.+++||+|
T Consensus 114 ~~~~~~l~~~A~~~h~wY~~~F----~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 114 LFVVVNLSPRAVQTHRWYKKKF----KEYPKNRKALIPFI 149 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC----ccccCCCeEecCcc
Confidence 3333444555555555566666 56667778999997
No 13
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.01 E-value=7.1e-09 Score=85.26 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHHHH
Q 029059 78 WWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGF 157 (199)
Q Consensus 78 ~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~~ 157 (199)
++-..+|..+++.|++++..++..+.+= +.+.+++-++-+.|.|.++--|||+|+++.++|.++...|.-++ .+
T Consensus 146 ~~r~liG~~lfv~Gm~iN~~sD~iL~~L-----Rk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws~p~~-aF 219 (257)
T KOG1638|consen 146 DIRFLIGVVLFVTGMLINIYSDNILRTL-----RKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWSLPAL-AF 219 (257)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHh-----hcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhhHHHH-HH
Confidence 3567899999999999999999988642 23335567888999999999999999999999999999887654 45
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccCC
Q 029059 158 AFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 158 ~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
++.....+.-|...--+.-.++| | ||=|..+.+|||+
T Consensus 220 a~ft~~~l~pRA~ahH~WY~~kF-e---~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 220 AFFTICNLGPRAYAHHKWYLKKF-E---DYPKNRKALIPFV 256 (257)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhh-c---cCCccceeecccc
Confidence 55555566677776666666777 5 4556666899997
No 14
>PLN02560 enoyl-CoA reductase
Probab=98.94 E-value=1.1e-08 Score=88.22 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCccccccc-cCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 029059 80 ISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVC-HEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFA 158 (199)
Q Consensus 80 ~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~-~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~~~ 158 (199)
...+|+++++.|.+.+..+...+..- + .+ .+.++++-..|.|+++--|||+++++.|+|+++++++..+.+ ++
T Consensus 193 ~~~~g~~lf~~~~~~N~~~h~~L~~L-R----~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~~~~~~-F~ 266 (308)
T PLN02560 193 QMKVGFGFGLVCQLANFYCHIILRNL-R----KPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQTVAGYL-FL 266 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-C----CCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHccHHHHH-HH
Confidence 35789999999999999999988642 1 11 244678888999999999999999999999999998776644 44
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHH--HHHHHhhCCccccCC
Q 029059 159 FVVWHFFAERITYEEYFLKEFFGIR--YEEYAQRVPSGVPFV 198 (199)
Q Consensus 159 ~~~~~~~~~ri~~EE~~L~~~fG~~--Y~~Y~~rv~~~iP~i 198 (199)
++...-+..|...-+|...++|+|+ ..+|.+|...++|++
T Consensus 267 ~~~~~~m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~~ 308 (308)
T PLN02560 267 AVAAAIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 308 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccccCCCceEeCCCcC
Confidence 4444445666666667777888773 345777666777764
No 15
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=98.79 E-value=1.2e-07 Score=76.59 Aligned_cols=98 Identities=17% Similarity=0.330 Sum_probs=73.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHH
Q 029059 75 KDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMST 154 (199)
Q Consensus 75 ~~~~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~ 154 (199)
.++.|...+..+++..+.++-..+....+ + .+ +||++|||+++|..+|.++..+..++.-++
T Consensus 64 ~~~~~~~~l~~~lm~~a~il~~~a~~~~~-------~---~~--------i~r~~RHP~l~g~~lWA~aHLl~nGd~~~~ 125 (191)
T PF07298_consen 64 DPPPWLRHLANLLMLLAFILLVAALFPPN-------P---FS--------IYRITRHPMLLGVLLWALAHLLANGDLASL 125 (191)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccCc-------c---hH--------HHHHhcCchHHHHHHHHHHHhhhcCcHHHH
Confidence 34456677777888888887666643221 0 11 999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCc
Q 029059 155 IGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPS 193 (199)
Q Consensus 155 ~~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~ 193 (199)
+++..+.. .-...+..|||. ++ +|++|++|+++|+.
T Consensus 126 lLFg~~~~-~al~~~~~~~rr-~~-~g~~~~~~~~~~s~ 161 (191)
T PF07298_consen 126 LLFGGFLA-WALIGIILIDRR-RR-FGDAWRAYPRRTSI 161 (191)
T ss_pred HHHHHHHH-HHHHHHHHHHHh-hc-cccccccccCCCCC
Confidence 76654332 234567788888 77 99999999998874
No 16
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=98.63 E-value=3.1e-07 Score=79.17 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhh-HHHHHHH
Q 029059 79 WISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCN-PMSTIGF 157 (199)
Q Consensus 79 ~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~-~~~~~~~ 157 (199)
|..++|+++++.|......+...+.+-..+ .++++++++-+.|.|+++--|||+++++.++|++++.++ ......+
T Consensus 209 ~~q~iGl~lFlig~~~n~~~H~iLa~LR~~---k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~~~~~~l~ 285 (323)
T PLN03164 209 WFQWIGAAIFLWGWIHQYRCHAILGSLREH---KKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGTDLTIWLL 285 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcC---CCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 345889999999999999999988643211 112457889999999999999999999999999999863 2221122
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccCC
Q 029059 158 AFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 158 ~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
.+....-+..+...-.+...++| +||-++.+.+|||+
T Consensus 286 ~~~v~~nL~~~A~~tHkWY~kkF----~dYPk~RkAIIPfI 322 (323)
T PLN03164 286 FGFVVANLTFAAAETHRWYLQKF----ENYPRNRYAIIPFV 322 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----cccccCceEecCcc
Confidence 22222223445555555556667 34667778999997
No 17
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=98.58 E-value=3.5e-07 Score=71.30 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=109.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhcchHHHHHHHHHHHHHHHHH---Hhh-------cC
Q 029059 3 MTEMFSYTACRQLSQMFFAVFFFHMSEYILAIAFHGSQSVTLRSLLISKNYILAMLFSMMEYIVE---IVL-------FP 72 (199)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~a~~n~~~~~~~s~l~~~~y~~~~~~~~~~~~~~---~~~-------~p 72 (199)
|++...+++.-..++-++++++-...-+++.+|++..++.+. +-..+..+-.+..++...++.. ... -|
T Consensus 9 ~~~L~~~vd~~~~sF~~a~v~i~fNPl~WNivAR~Ey~~~~L-tk~~gg~~kaCYmLaatIf~lgivRd~~y~~Al~~QP 87 (208)
T KOG4142|consen 9 MTRLLGYVDPLDPSFVAAVVTITFNPLYWNIVARWEYKTRKL-TKAFGGPYKACYMLAATIFLLGIVRDHCYTQALLSQP 87 (208)
T ss_pred HHHHHhhhccCCchhhhhhhhhhhchHHHHHHHHHHhhHHHH-HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555555555566667777766778888778753333222 1111112222222222222211 111 12
Q ss_pred CC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhh
Q 029059 73 GS---KDFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLC 149 (199)
Q Consensus 73 ~~---~~~~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~ 149 (199)
.. ..+.| .-+|.+++..|.++...+|..+|-..|-.-+...--...-||.=||....||||.|..+.++|+++.-+
T Consensus 88 t~~~~~~p~~-~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~g 166 (208)
T KOG4142|consen 88 TMESLDTPAA-YSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMHG 166 (208)
T ss_pred cchhccChHH-HHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHcC
Confidence 11 12333 568999999999999999999886555433222233455689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 029059 150 NPMSTIGFAFVVWHFFAERITYEEYFLKEFF 180 (199)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~ri~~EE~~L~~~f 180 (199)
.+.++++-+.+. ..+....+.||.+-.+.|
T Consensus 167 kpaGLllt~~V~-f~Y~iAL~~EEPFTA~IY 196 (208)
T KOG4142|consen 167 KPAGLLLTVLVA-FTYIIALLYEEPFTAEIY 196 (208)
T ss_pred CcchhHHHHHHH-HHHHHHHHhcCchHHHHH
Confidence 998887654332 334556688999988776
No 18
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=98.01 E-value=5e-05 Score=58.58 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhH
Q 029059 82 NVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNP 151 (199)
Q Consensus 82 ~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~ 151 (199)
..|..++.+|+++...++..+|...|-.-..-.... ..||+=||.+.+||||.|..+..+|+++.....
T Consensus 67 l~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~p~~ 135 (164)
T PLN02797 67 LYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWVPFQ 135 (164)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHhhHH
Confidence 458889999999999999999987765433322333 489999999999999999999999999988444
No 19
>COG4094 Predicted membrane protein [Function unknown]
Probab=97.94 E-value=2.1e-05 Score=63.26 Aligned_cols=105 Identities=15% Similarity=0.301 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHH
Q 029059 76 DFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTI 155 (199)
Q Consensus 76 ~~~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~ 155 (199)
++.|...+.+..+.+|.++-..+. ++...+..+|+=+.+|||..+|..+|++|.-+..|...+++
T Consensus 69 p~a~~~h~~l~~a~~~l~~l~A~~---------------~p~~~~~~g~Ii~itRHP~l~g~~iWalaHll~nGd~~Svl 133 (219)
T COG4094 69 PPAWSRHLALLLATFALILLAAGL---------------KPAQHLYEGRIIRITRHPQLLGVVIWALAHLLANGDTFSVL 133 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhc---------------cccccccCCceEEEecCchhHHHHHHHHHHhhccCceeeHH
Confidence 445555666666666666542221 23355677888899999999999999999999999877766
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccC
Q 029059 156 GFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPF 197 (199)
Q Consensus 156 ~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~ 197 (199)
.+..+.. .-...+..-||.-++++||++..=+++|++ +||
T Consensus 134 lfggf~l-~~~~~~~~~~rR~r~r~g~a~~~~~~~ts~-~pf 173 (219)
T COG4094 134 LFGGFLL-WAVVGVWSGDRRARKRYGEAFVAPVQVTSR-IPF 173 (219)
T ss_pred HHHHHHH-HHHHHhhhhhhhhhcccCcceeeeeccccc-cch
Confidence 5543322 123445667788889999999988888876 565
No 20
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=97.46 E-value=0.0023 Score=54.39 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHHHH
Q 029059 78 WWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGF 157 (199)
Q Consensus 78 ~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~~ 157 (199)
.+..++|.+++..|-.=...+-..+|.-..+ .+...++.+.+.|.++++--|+|++++...+|++....+..-.+.+
T Consensus 191 ~i~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~---~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~~~iwLv~ 267 (304)
T KOG1640|consen 191 SILQWLGLGIFAIGSIHQYASHEILGNLRKY---PRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPDLTIWLVF 267 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3467889999998888777777667633221 1125668889999999999999999999999987776664332222
Q ss_pred HHHHHHHHHHhH--HHHHHHHHHHhhHHHHHHHhhCCccccCC
Q 029059 158 AFVVWHFFAERI--TYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 158 ~~~~~~~~~~ri--~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
.|+.....+ -.--+.-.++ +++|-+..+.+|||+
T Consensus 268 ---~~V~~N~t~aA~~Th~wY~~k----F~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 268 ---GWVAANLTYAALETHRWYLKK----FENYPKNRHAIIPFL 303 (304)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHh----hccCccccccccccc
Confidence 222222222 2223333444 467777778999997
No 21
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.64 E-value=0.015 Score=48.72 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=50.0
Q ss_pred eeecc-ccccccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccCC
Q 029059 120 LITHG-VYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIGFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 120 Lvt~G-~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
-+-+| +|-++-.|||+-++.-|+|+.+++..+.+.+ +..+. .....|...-+ .++|-.|+.+|-++...+|||+
T Consensus 223 p~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~l~a~l-Fl~vg--~aqMtiWA~~K--h~~ylKeFp~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 223 PLPDGFLFNLVSCPNYTYEVGSWIGFAIMTQCLAAYL-FLTVG--AAQMTIWAKGK--HRRYLKEFPDYPRRRKIIIPFV 297 (297)
T ss_pred ecCCccEEEEEecCCcceehHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHhh--hHhHhhhcccCCccccccCCCC
Confidence 34556 8999999999999999999999998855443 22222 22233332222 2334456688888888999986
No 22
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=55.66 E-value=99 Score=24.23 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeecc--------ccccccchhhHHHHHHHHHH
Q 029059 81 SNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHG--------VYGFVRHPSYCGFLIWSVGT 144 (199)
Q Consensus 81 ~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G--------~Y~~~RHP~Y~G~~l~~~G~ 144 (199)
.+++.++..+-.++....+...++- .. +++.+|++.| ++.|.--=.|+.++.-.++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~l~~~~rp-----~~--~~~g~Lv~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~ 111 (170)
T PF05620_consen 47 SWFGYLLFSLPAIFCYYFLEKMARP-----KY--DETGELVDAGEDLNQPGGLTEYMFDIIYLTWFVQVLSI 111 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----Cc--CCCCCeecCcccccCCcchHHHHhHHHHHHHHHHHHHH
Confidence 4455555555555555555555432 12 3566677665 77777777777765554444
No 23
>PHA01929 putative scaffolding protein
Probab=49.48 E-value=15 Score=31.22 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhCC
Q 029059 171 YEEYFLKEFFGIRYEEYAQRVP 192 (199)
Q Consensus 171 ~EE~~L~~~fG~~Y~~Y~~rv~ 192 (199)
..|++|.|++|+++.+|..++.
T Consensus 155 IDe~yL~E~LGe~~A~~~i~vA 176 (306)
T PHA01929 155 IDTHYLKEVLGEAQAQHVINVA 176 (306)
T ss_pred hHHHHHHHHHhHHHHHHHHHHH
Confidence 5799999999999999988764
No 24
>COG3462 Predicted membrane protein [Function unknown]
Probab=47.30 E-value=93 Score=22.97 Aligned_cols=9 Identities=44% Similarity=0.541 Sum_probs=6.1
Q ss_pred HHHHHHHHh
Q 029059 172 EEYFLKEFF 180 (199)
Q Consensus 172 EE~~L~~~f 180 (199)
-|..++|+|
T Consensus 90 A~eIlkER~ 98 (117)
T COG3462 90 AEEILKERY 98 (117)
T ss_pred HHHHHHHHH
Confidence 345678888
No 25
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=41.91 E-value=1.9e+02 Score=23.53 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 029059 81 SNVGLVMVIAGEIIRKSAILTAG 103 (199)
Q Consensus 81 ~~~G~~l~~~G~~l~~~a~~~lg 103 (199)
.+++.+++++|.++...|..-+-
T Consensus 6 eiI~~vLLliG~~f~ligaIGLl 28 (197)
T PRK12585 6 EIIISIMILIGGLLSILAAIGVI 28 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777766666554443
No 26
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=40.72 E-value=95 Score=19.71 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=18.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh----hHHHHHH
Q 029059 159 FVVWHFFAERITYEEYFLKEFF----GIRYEEY 187 (199)
Q Consensus 159 ~~~~~~~~~ri~~EE~~L~~~f----G~~Y~~Y 187 (199)
+++..+...+...||+.+.+.+ |+.|-+=
T Consensus 12 I~~S~ym~v~t~~eE~~~dq~~IEkEGevymeR 44 (52)
T PF14147_consen 12 IIFSGYMAVKTAKEEREIDQEFIEKEGEVYMER 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence 3444556677778888876555 5555543
No 27
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=38.12 E-value=22 Score=26.13 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=16.9
Q ss_pred HHHhhHHHHHHHhhCCccccCC
Q 029059 177 KEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 177 ~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
.+++ +.|.+|++++.|=||-+
T Consensus 90 ~~~~-p~~~~yq~~t~R~ipv~ 110 (113)
T TIGR00026 90 VRLY-PRYGRYQSRTDRPIPVF 110 (113)
T ss_pred HHHC-cCHHHHHhhCCCcccEE
Confidence 4566 67999999999988853
No 28
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=31.63 E-value=40 Score=25.40 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=16.2
Q ss_pred HHHHhhHHHHHHHhhCCccccC
Q 029059 176 LKEFFGIRYEEYAQRVPSGVPF 197 (199)
Q Consensus 176 L~~~fG~~Y~~Y~~rv~~~iP~ 197 (199)
+.+.+ +.|++|+++|.|=||-
T Consensus 107 ~~~~~-p~~~~y~~~t~R~ipv 127 (132)
T PF04075_consen 107 LVAAY-PGYADYQARTGRRIPV 127 (132)
T ss_dssp HHHHS-THHHHHHHHCSSTS-E
T ss_pred HHHHC-cChHHhcccCCCEeeE
Confidence 34566 7799999999988883
No 29
>PF08764 Coagulase: Staphylococcus aureus coagulase; InterPro: IPR014874 Staphylococcus aureus secretes a cofactor called coagulase. Coagulase is an extracellular protein that forms a complex with human prothrombin, and activates it without the usual proteolytic cleavages []. The resulting complex directly initiates blood clotting. ; PDB: 1NU7_H 1NU9_C 2A1D_D.
Probab=30.36 E-value=77 Score=27.25 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHhhHHHHHHHh
Q 029059 165 FAERITYEEYFLKEFFGIRYEEYAQ 189 (199)
Q Consensus 165 ~~~ri~~EE~~L~~~fG~~Y~~Y~~ 189 (199)
+..|+-.||++|.+++-++|+.|++
T Consensus 60 l~~ril~Ed~yLl~~k~~~~~~~k~ 84 (282)
T PF08764_consen 60 LMQRILAEDQYLLEKKKDEYEKYKK 84 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999998887788888774
No 30
>PHA02547 55 RNA polymerase sigma factor; Provisional
Probab=26.35 E-value=2.5e+02 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 029059 150 NPMSTIGFAFVVWHFFAERITYEEYFLKEFF 180 (199)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~ri~~EE~~L~~~f 180 (199)
||.+-+- -+++..|..||..|++.+..++
T Consensus 92 Np~aYiT--~~~~~AF~~RI~kEkke~a~K~ 120 (179)
T PHA02547 92 NPHAYIT--QACFNAFVQRIKKEKKEMAIKY 120 (179)
T ss_pred ChHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4544432 2344457899999998876554
No 31
>PF07508 Recombinase: Recombinase; InterPro: IPR011109 This domain is usually found associated with IPR006119 from INTERPRO in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.
Probab=23.71 E-value=29 Score=24.07 Aligned_cols=26 Identities=19% Similarity=0.508 Sum_probs=20.1
Q ss_pred CCCceeeeccccccccchhhHHHHHH
Q 029059 115 EEHHELITHGVYGFVRHPSYCGFLIW 140 (199)
Q Consensus 115 ~~~~~Lvt~G~Y~~~RHP~Y~G~~l~ 140 (199)
..+.+.-.+-+.++.|||.|.|...+
T Consensus 35 ~~~~~W~~~~v~~iL~np~y~G~~~~ 60 (102)
T PF07508_consen 35 PRGKKWSKSTVRRILRNPAYAGYRVY 60 (102)
T ss_pred ccCCcccHHHHHHHHhhhhccceEEe
Confidence 34455678889999999999997543
No 32
>PHA02677 hypothetical protein; Provisional
Probab=23.01 E-value=2.1e+02 Score=20.86 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=18.5
Q ss_pred HHHhHHHHHHHHHHHhhHHHHHHHhhCC
Q 029059 165 FAERITYEEYFLKEFFGIRYEEYAQRVP 192 (199)
Q Consensus 165 ~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~ 192 (199)
|..-+|.--+.|++++ ++|..|++--+
T Consensus 15 FNIiVP~I~EKlR~E~-~Af~ky~~l~~ 41 (108)
T PHA02677 15 FNILVPGIFEKLRQEH-AAFDRLANAGD 41 (108)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCC
Confidence 4455665555677777 99999987543
No 33
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=22.17 E-value=4.4e+02 Score=21.51 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHH
Q 029059 82 NVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQ 145 (199)
Q Consensus 82 ~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~ 145 (199)
++.+.+++.|.+.|.-... . .|+ .+.+++..+..-.+.-.+.-.|.++..+|..
T Consensus 11 yial~v~~~g~~~R~~~~~-~--~w~-------~~ss~~~~~r~L~~~s~lfH~Gil~v~~gH~ 64 (222)
T PF02665_consen 11 YIALTVFVVGSLYRYRYDQ-F--SWT-------SRSSQFLENRWLWWGSYLFHWGILLVFFGHV 64 (222)
T ss_dssp HHHHHHHHHHHHHHHHH-G-G--G-S-----------TTT--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhc-c--ccc-------CCCcceecCCceeehHHHHHHHHHHHHHHHH
Confidence 5678889999999964431 2 232 2334455555666777788888877777754
No 34
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=20.74 E-value=4.5e+02 Score=21.09 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhC-ccccccccCCCceeeecc-ccccccchhhHHHHHHHHHHHHHhhhHHHHHH
Q 029059 79 WISNVGLVMVIAGEIIRKSAILTAGRSF-THIIKVCHEEHHELITHG-VYGFVRHPSYCGFLIWSVGTQIMLCNPMSTIG 156 (199)
Q Consensus 79 ~~~~~G~~l~~~G~~l~~~a~~~lg~~~-t~~i~~~~~~~~~Lvt~G-~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~~ 156 (199)
+..++++++..+++.+.+.-+.++++.- +..-.. -+.++-+-+.| +=+++-|-+|+-.+...+.+.. .-.++++++
T Consensus 51 ~~~wi~lv~s~l~~g~~y~~m~~mAkpkydd~G~L-ld~G~Dln~~g~~~sy~~D~iylt~~v~llsiis-~kfw~~lLl 128 (180)
T KOG3269|consen 51 KTSWIGLVFSSLVYGFAYYFMHSMAKPKYDDDGAL-LDGGFDLNDEGAICSYVKDAIYLTCFVQLLSIIS-GKFWASLLL 128 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCce-eecCcCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4467788888888888888888876531 110000 03344555666 7788888888887665544433 334455544
Q ss_pred HHH
Q 029059 157 FAF 159 (199)
Q Consensus 157 ~~~ 159 (199)
.++
T Consensus 129 ~P~ 131 (180)
T KOG3269|consen 129 IPI 131 (180)
T ss_pred hhH
Confidence 443
No 35
>PF07325 Curto_V2: Curtovirus V2 protein; InterPro: IPR009931 This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process [].
Probab=20.33 E-value=41 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=17.5
Q ss_pred cccccccchh-hHHHHHHHHHHHHHhhhHHHHH
Q 029059 124 GVYGFVRHPS-YCGFLIWSVGTQIMLCNPMSTI 155 (199)
Q Consensus 124 G~Y~~~RHP~-Y~G~~l~~~G~~l~~~~~~~~~ 155 (199)
||||...-|. |-.++-... -+++--|-||++
T Consensus 2 gPfrV~qFP~nYPa~LAvsT-SCflrYNkwCil 33 (126)
T PF07325_consen 2 GPFRVDQFPDNYPALLAVST-SCFLRYNKWCIL 33 (126)
T ss_pred CCcccccCCccchHHHHHHh-HHHHhhchhhee
Confidence 7888888886 555433322 233344556543
Done!