Query 029059
Match_columns 199
No_of_seqs 244 out of 1499
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 100.0 1.9E-34 6.5E-39 232.2 19.2 121 76-198 73-193 (194)
2 3r5y_A Putative uncharacterize 66.0 3.2 0.00011 31.1 2.3 21 176-197 121-141 (147)
3 2jp3_A FXYD domain-containing 64.7 4.6 0.00016 26.1 2.5 40 83-124 24-63 (67)
4 3r5z_A Putative uncharacterize 59.1 5.1 0.00017 29.9 2.3 21 176-197 119-139 (145)
5 3h96_A F420-H2 dependent reduc 57.9 5.6 0.00019 29.6 2.3 21 176-197 115-137 (143)
6 3r5l_A Deazaflavin-dependent n 56.1 1.4 4.6E-05 32.0 -1.3 21 176-197 97-117 (122)
7 2zxe_G FXYD10, phospholemman-l 26.4 22 0.00075 23.3 1.0 20 83-102 26-45 (74)
8 1p58_D Envelope protein M; fla 25.9 79 0.0027 20.6 3.7 22 128-150 36-57 (75)
9 1vk5_A Expressed protein; stru 16.0 45 0.0015 24.5 0.9 22 169-192 32-53 (157)
10 3j27_B Matrix protein, small e 14.2 1.3E+02 0.0044 19.6 2.7 15 129-144 37-51 (75)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.9e-34 Score=232.21 Aligned_cols=121 Identities=24% Similarity=0.326 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeeccccccccchhhHHHHHHHHHHHHHhhhHHHHH
Q 029059 76 DFWWISNVGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHGVYGFVRHPSYCGFLIWSVGTQIMLCNPMSTI 155 (199)
Q Consensus 76 ~~~~~~~~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G~Y~~~RHP~Y~G~~l~~~G~~l~~~~~~~~~ 155 (199)
.+.++..+|+++.++|+.++.+|+.++|++|++.++. +++|++||+|+|+++|||||+|++++++|+++.++|+++++
T Consensus 73 ~p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~--~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~ 150 (194)
T 4a2n_B 73 LPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEI--KDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLI 150 (194)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCE--ETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC--CCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHH
Confidence 4567789999999999999999999999999987655 78999999999999999999999999999999999998766
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhhCCccccCC
Q 029059 156 GFAFVVWHFFAERITYEEYFLKEFFGIRYEEYAQRVPSGVPFV 198 (199)
Q Consensus 156 ~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~~~iP~i 198 (199)
...+.....+..|++.||+.|+++||+||++||+||||+||++
T Consensus 151 ~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 151 FGIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCcee
Confidence 4333333345689999999999999999999999999999986
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=66.04 E-value=3.2 Score=31.06 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.4
Q ss_pred HHHHhhHHHHHHHhhCCccccC
Q 029059 176 LKEFFGIRYEEYAQRVPSGVPF 197 (199)
Q Consensus 176 L~~~fG~~Y~~Y~~rv~~~iP~ 197 (199)
+.+.+ ++|.+|+++|.|-||-
T Consensus 121 ~~~~~-P~y~~Yq~~t~R~IPv 141 (147)
T 3r5y_A 121 AVRAY-PTYQEYQDNTRRLIPV 141 (147)
T ss_dssp HHHHC-THHHHHHHTCSSCCCE
T ss_pred HHHHC-CCHHHHHhhcCCcCcE
Confidence 34566 7899999999999984
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=64.73 E-value=4.6 Score=26.06 Aligned_cols=40 Identities=30% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCccccccccCCCceeeecc
Q 029059 83 VGLVMVIAGEIIRKSAILTAGRSFTHIIKVCHEEHHELITHG 124 (199)
Q Consensus 83 ~G~~l~~~G~~l~~~a~~~lg~~~t~~i~~~~~~~~~Lvt~G 124 (199)
++.++++.|+++-...-..++.+..+ +..+++...|+|.|
T Consensus 24 fA~vLfi~GI~iilS~kcrCk~~qk~--~~~~~~a~~litpg 63 (67)
T 2jp3_A 24 FGGLLCIAGIALALSGKCKCRRNHTP--SSLPEKVTPLITPG 63 (67)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHTCCT--TTSTTTSHHHHSCC
T ss_pred hHHHHHHHHHHHHHcCcccccCCCCC--CCCCccCCceecCC
Confidence 45567888888776665555443333 22235566688776
No 4
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=59.12 E-value=5.1 Score=29.87 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=17.3
Q ss_pred HHHHhhHHHHHHHhhCCccccC
Q 029059 176 LKEFFGIRYEEYAQRVPSGVPF 197 (199)
Q Consensus 176 L~~~fG~~Y~~Y~~rv~~~iP~ 197 (199)
+.+.+ ++|.+|+++|.|-||-
T Consensus 119 ~~~~~-p~y~~Yq~~t~R~iPv 139 (145)
T 3r5z_A 119 AVEVW-PDYAEYQTKTTREIPV 139 (145)
T ss_dssp HHHHC-THHHHHGGGCSSCCCE
T ss_pred HHHHC-cCHHHHHHhcCCcCce
Confidence 34556 7899999999999984
No 5
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=57.87 E-value=5.6 Score=29.55 Aligned_cols=21 Identities=10% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHhhHHHHHHHhhCC--ccccC
Q 029059 176 LKEFFGIRYEEYAQRVP--SGVPF 197 (199)
Q Consensus 176 L~~~fG~~Y~~Y~~rv~--~~iP~ 197 (199)
+.+.+ +.|.+|+++|. |-||-
T Consensus 115 ~~~~~-P~y~~Yq~~t~~~R~iPv 137 (143)
T 3h96_A 115 QARRY-PGFADYEKKTAGIRTIPV 137 (143)
T ss_dssp HHHHC-THHHHHHHHTTTTCCCCE
T ss_pred HHHHC-cCHHHHHHhcCCCCcccE
Confidence 34566 67999999999 99984
No 6
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=56.08 E-value=1.4 Score=32.04 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=17.6
Q ss_pred HHHHhhHHHHHHHhhCCccccC
Q 029059 176 LKEFFGIRYEEYAQRVPSGVPF 197 (199)
Q Consensus 176 L~~~fG~~Y~~Y~~rv~~~iP~ 197 (199)
+.++| ++|.+|+++|.|-||-
T Consensus 97 ~~~~~-p~y~~yq~~t~R~ipv 117 (122)
T 3r5l_A 97 LVTMY-PSYQDYQSWTDRTIPI 117 (122)
T ss_dssp HHHHC-TTCCCTTGGGCTTSCE
T ss_pred HHHHC-cCHHHHHhhcCCcccE
Confidence 45677 7899999999999984
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=26.42 E-value=22 Score=23.30 Aligned_cols=20 Identities=25% Similarity=0.286 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029059 83 VGLVMVIAGEIIRKSAILTA 102 (199)
Q Consensus 83 ~G~~l~~~G~~l~~~a~~~l 102 (199)
++.++++.|+++-...-..+
T Consensus 26 fA~vLfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 26 VAAVLCVIGIIILLAGKCRC 45 (74)
T ss_dssp HHHHHHHHHHHHHTTTC---
T ss_pred hHHHHHHHHHHHHHcCcccc
Confidence 34556777777765543333
No 8
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=25.85 E-value=79 Score=20.64 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=15.4
Q ss_pred cccchhhHHHHHHHHHHHHHhhh
Q 029059 128 FVRHPSYCGFLIWSVGTQIMLCN 150 (199)
Q Consensus 128 ~~RHP~Y~G~~l~~~G~~l~~~~ 150 (199)
..|||.|.-... .+|+.+-..+
T Consensus 36 ilrNp~~al~a~-~~~w~lG~~~ 57 (75)
T 1p58_D 36 ILRHPGFTIMAA-ILAYTIGTTH 57 (75)
T ss_pred HHHChHHHHHHH-HHHHHHcCCh
Confidence 369999998877 7777554333
No 9
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=16.04 E-value=45 Score=24.48 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhCC
Q 029059 169 ITYEEYFLKEFFGIRYEEYAQRVP 192 (199)
Q Consensus 169 i~~EE~~L~~~fG~~Y~~Y~~rv~ 192 (199)
+..|+..+ ++ .+-|++|+|+.|
T Consensus 32 ~~~e~~li-Rr-AEmYQ~YMK~iP 53 (157)
T 1vk5_A 32 VADEGSLL-RR-AEMYQDYMKQVP 53 (157)
T ss_dssp ----CTTH-HH-HHHHHHHHHTSC
T ss_pred cCcchhhh-hH-HHHHHHHHHhCC
Confidence 44555544 44 599999999987
No 10
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=14.15 E-value=1.3e+02 Score=19.57 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=11.8
Q ss_pred ccchhhHHHHHHHHHH
Q 029059 129 VRHPSYCGFLIWSVGT 144 (199)
Q Consensus 129 ~RHP~Y~G~~l~~~G~ 144 (199)
.|||.|.-.... +|+
T Consensus 37 lrNp~~al~~~~-~~w 51 (75)
T 3j27_B 37 LRHPGFTIMAAI-LAY 51 (75)
T ss_dssp HHCCTHHHHHHH-HHH
T ss_pred HHChHHHHHHHH-HHH
Confidence 699999887666 666
Done!