Query 029059
Match_columns 199
No_of_seqs 244 out of 1499
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 10:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029059.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029059hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nu9c1 a.8.6.1 (C:1-145) Stap 32.2 25 0.0018 24.1 4.0 26 165-190 62-87 (145)
2 d1rgoa2 g.66.1.1 (A:187-220) B 20.7 12 0.00091 19.3 0.4 6 129-134 1-6 (34)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 16.9 26 0.0019 16.7 1.1 8 182-189 16-23 (27)
4 d1e7la1 a.140.4.1 (A:104-157) 15.2 23 0.0017 20.2 0.7 10 131-140 2-11 (54)
5 d1uc8a1 c.30.1.6 (A:1-88) Lysi 14.6 27 0.002 21.6 1.1 15 166-180 6-20 (88)
6 d2fg1a1 c.50.1.2 (A:2-155) Hyp 13.2 47 0.0034 22.0 2.2 15 175-189 37-51 (154)
7 d1s7ia_ d.58.4.9 (A:) Hypothet 10.9 47 0.0034 21.8 1.5 13 115-127 66-78 (124)
8 d1v8ha1 b.1.18.19 (A:2-107) Su 10.5 21 0.0015 23.2 -0.5 11 127-137 23-33 (106)
9 d1vr5a1 c.94.1.1 (A:23-557) Ol 8.8 44 0.0032 26.8 0.8 21 117-137 159-189 (535)
10 d1g8qa_ a.135.1.1 (A:) CD81 ex 8.8 1.2E+02 0.0085 18.8 2.8 20 173-192 8-27 (90)
No 1
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=32.19 E-value=25 Score=24.15 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHhhHHHHHHHhh
Q 029059 165 FAERITYEEYFLKEFFGIRYEEYAQR 190 (199)
Q Consensus 165 ~~~ri~~EE~~L~~~fG~~Y~~Y~~r 190 (199)
+..|+.-||++|.++=-++|+.|++.
T Consensus 62 LmtrvlgeDqYLlekK~~~ye~yk~~ 87 (145)
T d1nu9c1 62 LMTRILGEDQYLLERKKVQYEEYKKL 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34678889999877655777777653
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.66 E-value=12 Score=19.31 Aligned_cols=6 Identities=67% Similarity=1.453 Sum_probs=4.2
Q ss_pred ccchhh
Q 029059 129 VRHPSY 134 (199)
Q Consensus 129 ~RHP~Y 134 (199)
+|||.|
T Consensus 1 ~rhpky 6 (34)
T d1rgoa2 1 TRHPKY 6 (34)
T ss_dssp CCCTTT
T ss_pred CCCCCc
Confidence 478776
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.89 E-value=26 Score=16.70 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=5.2
Q ss_pred HHHHHHHh
Q 029059 182 IRYEEYAQ 189 (199)
Q Consensus 182 ~~Y~~Y~~ 189 (199)
.+|++||+
T Consensus 16 aayqqykr 23 (27)
T d2e74g1 16 AAYQQYKR 23 (27)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhcC
Confidence 66777754
No 4
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=15.16 E-value=23 Score=20.22 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=7.5
Q ss_pred chhhHHHHHH
Q 029059 131 HPSYCGFLIW 140 (199)
Q Consensus 131 HP~Y~G~~l~ 140 (199)
||+|++...=
T Consensus 2 Hp~~~~D~~K 11 (54)
T d1e7la1 2 HPNFVGDKSK 11 (54)
T ss_dssp CTHHHHHHHH
T ss_pred CcchhhHHHH
Confidence 8999887543
No 5
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.58 E-value=27 Score=21.63 Aligned_cols=15 Identities=33% Similarity=0.242 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHHHh
Q 029059 166 AERITYEEYFLKEFF 180 (199)
Q Consensus 166 ~~ri~~EE~~L~~~f 180 (199)
+.+++.|||.|.+.+
T Consensus 6 y~~~R~eEk~L~~a~ 20 (88)
T d1uc8a1 6 YDRIRPDERMLFERA 20 (88)
T ss_dssp ESSCCHHHHHHHHHH
T ss_pred EccccHHHHHHHHHH
Confidence 457889999998876
No 6
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=13.24 E-value=47 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=9.1
Q ss_pred HHHHHhhHHHHHHHh
Q 029059 175 FLKEFFGIRYEEYAQ 189 (199)
Q Consensus 175 ~L~~~fG~~Y~~Y~~ 189 (199)
.+.++||+.|++|++
T Consensus 37 ai~~~~p~~~~~~~~ 51 (154)
T d2fg1a1 37 ALSKKWKMPEEAYRQ 51 (154)
T ss_dssp HHHHHCSHHHHHHHH
T ss_pred HHHHHcCcHHHHHHH
Confidence 356677766665554
No 7
>d1s7ia_ d.58.4.9 (A:) Hypothetical protein PA1349 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.94 E-value=47 Score=21.81 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=11.2
Q ss_pred CCCceeeeccccc
Q 029059 115 EEHHELITHGVYG 127 (199)
Q Consensus 115 ~~~~~Lvt~G~Y~ 127 (199)
+++...||+|||.
T Consensus 66 ~~g~~~vtDGPf~ 78 (124)
T d1s7ia_ 66 QGGRLAMTDGPFA 78 (124)
T ss_dssp CSSCEEEEESCSS
T ss_pred CCCcceeccCCCc
Confidence 6778899999995
No 8
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=10.53 E-value=21 Score=23.20 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=8.8
Q ss_pred ccccchhhHHH
Q 029059 127 GFVRHPSYCGF 137 (199)
Q Consensus 127 ~~~RHP~Y~G~ 137 (199)
-.++|||..|.
T Consensus 23 ~li~HPMeTG~ 33 (106)
T d1v8ha1 23 VVAQHPNEPGT 33 (106)
T ss_dssp EEECCCCBCSC
T ss_pred EEEECCCcccc
Confidence 47899998874
No 9
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
Probab=8.83 E-value=44 Score=26.81 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=15.7
Q ss_pred Cceeeecccccc----------ccchhhHHH
Q 029059 117 HHELITHGVYGF----------VRHPSYCGF 137 (199)
Q Consensus 117 ~~~Lvt~G~Y~~----------~RHP~Y~G~ 137 (199)
+...+.+|||++ .|||+|.|.
T Consensus 159 ~~~pvgtGPy~l~~~~~~~~~l~rn~~Y~~~ 189 (535)
T d1vr5a1 159 NENPVGSGPYYVESWADDRCVFKKNGNWWGI 189 (535)
T ss_dssp CSSCCCSSSEEEEEEETTEEEEEECTTCHHH
T ss_pred CCCccccCceeeeeecccccccccccccccc
Confidence 344567788875 899999874
No 10
>d1g8qa_ a.135.1.1 (A:) CD81 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.78 E-value=1.2e+02 Score=18.76 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=14.7
Q ss_pred HHHHHHHhhHHHHHHHhhCC
Q 029059 173 EYFLKEFFGIRYEEYAQRVP 192 (199)
Q Consensus 173 E~~L~~~fG~~Y~~Y~~rv~ 192 (199)
++.+.+.|-+.|.+|.++++
T Consensus 8 ~~ev~~FY~~~Y~~y~~~~~ 27 (90)
T d1g8qa_ 8 AKDVKQFYDQALQQAVVDDD 27 (90)
T ss_dssp HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 34477889888999976553
Done!