BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029062
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo
sapiens GN=PROSC PE=1 SV=1
Length = 275
Score = 177 bits (448), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 120/169 (71%), Gaps = 5/169 (2%)
Query: 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR-KPLKVLVQVN 90
+IKWHF+GHLQ L+ VPNL M+E V + K+A+ ++ + G + LKV+VQ+N
Sbjct: 88 EIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQIN 146
Query: 91 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRA 147
TSGEESK G+ PS + IVEH+ +CPNLEF GLMTIG D + P +F+ LL+ R
Sbjct: 147 TSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLRE 206
Query: 148 EVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
E+CK L + DQ ELSMGMS DF+ A+E+GST+VRIGSTIFG R+Y+KK
Sbjct: 207 ELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSKK 255
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus
musculus GN=Prosc PE=1 SV=1
Length = 274
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 121/169 (71%), Gaps = 5/169 (2%)
Query: 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVN 90
+IKWHF+GHLQ L+ VPNL M+E V + K+A+ ++ + G +PLKV+VQ+N
Sbjct: 88 EIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQIN 146
Query: 91 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRA 147
TSGE+SK G+ PS + +VEH++ CP+LEF GLMTIG D + P +F+ LL R
Sbjct: 147 TSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRR 206
Query: 148 EVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
E+C+ LG+ +Q ELSMGMS DF+ AIE+GST+VRIGSTIFG R+Y+KK
Sbjct: 207 ELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYSKK 255
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo
abelii GN=PROSC PE=2 SV=1
Length = 275
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 120/173 (69%), Gaps = 5/173 (2%)
Query: 28 NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR-KPLKVL 86
+L +IKWHF+GHLQ L+ VPNL ++E V + K+A ++ + G + LKV+
Sbjct: 84 SLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKLAGKVNSSWQKKGSPERLKVM 142
Query: 87 VQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYTSTPE-NFRTLL 143
VQ+NTSGEESK G+ PS + IVEH+ +CPNLEF GLMTIG D + P +F+ LL
Sbjct: 143 VQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLL 202
Query: 144 NCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
+ R E+CK L + DQ ELSMGMS DF+ AIE+GST+VRIGS IFG R+Y+KK
Sbjct: 203 SLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGERDYSKK 255
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos
taurus GN=PROSC PE=2 SV=1
Length = 273
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 118/169 (69%), Gaps = 5/169 (2%)
Query: 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR-KPLKVLVQVN 90
+IKWHF+GHLQ L+ VPNL M+E V + K+A+ ++ A G + LKV+VQ+N
Sbjct: 88 EIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKKGSPERLKVMVQIN 146
Query: 91 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRA 147
TSGE SK G+ P+ +VEH+ +CP+LEF GLMTIG D + P +F+ LL+ R
Sbjct: 147 TSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLRE 206
Query: 148 EVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
E+C+ LG +Q ELSMGMS DF+ AIE+GST+VRIGSTIFG R+Y+KK
Sbjct: 207 ELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYSKK 255
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein
OS=Dictyostelium discoideum GN=prosc PE=3 SV=2
Length = 255
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 113/179 (63%), Gaps = 14/179 (7%)
Query: 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK------- 84
+IKWHF+G +QSNK+K +L V NL +VE V N+KI + L K++ N
Sbjct: 78 EIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNNNNK 136
Query: 85 ---VLVQVNTSGEESKSGIDPSSCLGIVEHV--RLRCPN-LEFSGLMTIGMPDYTSTPEN 138
+++QVNTSGEESKSG P CL +V+H C N L F GLMTIG P+ T +
Sbjct: 137 KLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPD 196
Query: 139 FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQ 197
F+ L++C+ + K L + D ELSMGMS DFE AIE GSTSVR+GS IFG R+Y+ K+
Sbjct: 197 FKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFGERDYSNKK 255
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein
OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1
Length = 244
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 100/170 (58%), Gaps = 6/170 (3%)
Query: 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR--KPLKVLVQV 89
DI+WHF+G +QSNK + P L VE V EK A DK S G PL+VLVQV
Sbjct: 76 DIRWHFIGQVQSNKIGKICNS-PGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQV 134
Query: 90 NTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT-STPEN--FRTLLNCR 146
NTSGE++K GI+ + E +R C NL+F G MTIG D + ++ EN F L R
Sbjct: 135 NTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVR 194
Query: 147 AEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
+ G + D ELSMGMS DF QAI G+TSVR+GS +FG REY K
Sbjct: 195 QTWAEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAREYKNK 244
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1
Length = 236
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 108/186 (58%), Gaps = 12/186 (6%)
Query: 13 YKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLD 72
Y + + +R+ +++ ++WHF+G LQSNK + + + D V + EKIA L
Sbjct: 58 YVQEGVDKIRYFAEHHPQLALEWHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLS 114
Query: 73 KAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI--GMP 130
+ + PL+VL+QVNTSGE SKSGI+P + E + R PNL GLM+I +P
Sbjct: 115 EQ-RPVNMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELIS-RLPNLTLRGLMSIPENVP 172
Query: 131 DYTSTPENFRTLLNCRAEVCKALGMAEDQCE-LSMGMSGDFEQAIEMGSTSVRIGSTIFG 189
DY + F L AE+ + L Q + LSMGMSGD + AIE GST VRIG+ IFG
Sbjct: 173 DYPAQLAAFTQL----AELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFG 228
Query: 190 PREYAK 195
R+Y++
Sbjct: 229 ERDYSR 234
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio
alginolyticus PE=3 SV=1
Length = 233
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 15/180 (8%)
Query: 19 KLLRFIDKYNLPED-IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVS 76
K+ F + Y P++ I+WHF+G +QSNK++ + + D V + KIA L D+ S
Sbjct: 65 KVQHFAEHY--PDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQRPS 119
Query: 77 NLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI--GMPDYTS 134
L KPL+VL+QVNTSGE SKSG+ + + E + R PNL GLM+I + DY S
Sbjct: 120 EL--KPLQVLIQVNTSGEASKSGVTEAEVFELAELIS-RLPNLTLRGLMSIPANVSDYES 176
Query: 135 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 194
F+ L + + + LSMGMSGD AIE GST VRIG+ IFG R+Y+
Sbjct: 177 QLHEFQKLATLKQTLEAQFPEIDT---LSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC644.09 PE=3 SV=1
Length = 237
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 23 FIDKYNL-PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK 81
F+ K L P+D++WHF+G LQS+K K + V NL +E + EK A ++ A L +
Sbjct: 57 FLKKVELMPDDVQWHFIGSLQSSKCKKI-ASVKNLYSIETIDTEKKARLVNSAREAL-QL 114
Query: 82 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPE---N 138
PL V +QVNTSGEE+K G+ PS L + + V+ L GLMTIG + + +
Sbjct: 115 PLNVYIQVNTSGEENKGGVTPSKVLELCKQVQ-DMKYLRLKGLMTIGSISNSQLSDHNPD 173
Query: 139 FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 195
F+ L + R + LG+ +LSMGMS D+ AI+ GS SVR+GS+IFG R K
Sbjct: 174 FQVLSDLRESLQNELGIP---LQLSMGMSSDYLLAIKYGSDSVRVGSSIFGSRPTEK 227
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70)
GN=PM0112 PE=3 SV=1
Length = 233
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 111/185 (60%), Gaps = 10/185 (5%)
Query: 13 YKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLD 72
Y + ++ +++ + N+P ++WHF+G LQSNK K + + D ++ + +KIA+ L+
Sbjct: 57 YVQEGVEKIQYFAQKNIP--LEWHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLN 111
Query: 73 KAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-- 130
+ + +KPL VL+Q+N S E+SKSGI P+ L + + ++ P+L GLM I P
Sbjct: 112 EQRPHY-KKPLNVLIQINISDEDSKSGIQPNEMLDLAKQIQ-NLPHLCLRGLMAIPAPTD 169
Query: 131 DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 190
D + + F + + ++ +AL A+ LSMGM+ D AI+ GST VRIG+ IFG
Sbjct: 170 DLATQEQAFTQMHSLFEQLKQALPDAQIDT-LSMGMTDDMASAIQCGSTMVRIGTAIFGA 228
Query: 191 REYAK 195
R+Y+K
Sbjct: 229 RDYSK 233
>sp|O66631|Y274_AQUAE UPF0001 protein aq_274 OS=Aquifex aeolicus (strain VF5) GN=aq_274
PE=3 SV=1
Length = 228
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 19/179 (10%)
Query: 23 FIDKYNLPEDI--KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV--SNL 78
F+ KY +D+ +WHF+G LQ+NK K L+G V ++ + + +A+ + K +N+
Sbjct: 61 FLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKVV---LIHSLDRKNLADEIQKRAFKNNI 117
Query: 79 GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPEN 138
+ VL++VN GEE+K G++P + + E+ L PN++ GLMTI P Y PE+
Sbjct: 118 VQD---VLIEVNVGGEETKGGVEPENLKELFEYT-LELPNVKVLGLMTI--PPYLENPED 171
Query: 139 ----FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 193
FR L R E+ + +A LSMGMS DFE AIE G+T VRIG+ +FG R+Y
Sbjct: 172 VRPYFRKLRELRDELQREYNVALPH--LSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228
>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1
Length = 237
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT 91
+++WHF+G LQSNK + + + D ++ + KIA+ L++ + PL VL+Q+N
Sbjct: 74 NLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINI 129
Query: 92 SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTSTPEN-FRTLLNCRAEV 149
S EESKSGI P L + +H+ P+L GLM I P D + EN FR +L ++
Sbjct: 130 SDEESKSGIQPEEMLTLAKHIE-NLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQL 188
Query: 150 CKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQ 197
+ L + LSMGM+ D AI+ GST VRIG+ IFG R Y+ Q
Sbjct: 189 KQVLPNQQIDT-LSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYSTSQ 235
>sp|P38197|YBD6_YEAST UPF0001 protein YBL036C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YBL036C PE=1 SV=1
Length = 257
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 99/171 (57%), Gaps = 12/171 (7%)
Query: 29 LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR--KPLKVL 86
LP+DIKWHF+G LQ+NK K L VPNL VE + + K A L+++ + P+
Sbjct: 82 LPDDIKWHFIGGLQTNKCKDL-AKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCN 140
Query: 87 VQVNTSGEESKSGIDPSSCLGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPEN--FR 140
VQ+NTS E+ KSG++ + + V L C ++ +GLMTIG + + + EN F
Sbjct: 141 VQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFA 200
Query: 141 TLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 191
TL+ + ++ G + +LSMGMS DF +AI G+ VRIG+ IFG R
Sbjct: 201 TLVEWKKKIDAKFGTS---LKLSMGMSADFREAIRQGTAEVRIGTDIFGAR 248
>sp|P67080|YGGS_ECOLI UPF0001 protein YggS OS=Escherichia coli (strain K12) GN=yggS PE=1
SV=1
Length = 234
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 33 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKPLKVLVQVNT 91
++WHF+G LQSNK++ + + D + +IA L D+ + L PL VL+Q+N
Sbjct: 77 LEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINI 131
Query: 92 SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCK 151
S E SKSGI + + V P L GLM I P+ E R R
Sbjct: 132 SDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVA 186
Query: 152 ALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 187 FAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P67081|YGGS_ECOL6 UPF0001 protein YggS OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yggS PE=3 SV=1
Length = 234
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 33 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKPLKVLVQVNT 91
++WHF+G LQSNK++ + + D + +IA L D+ + L PL VL+Q+N
Sbjct: 77 LEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINI 131
Query: 92 SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCK 151
S E SKSGI + + V P L GLM I P+ E R R
Sbjct: 132 SDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVA 186
Query: 152 ALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 187 FAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P67082|YGGS_ECO57 UPF0001 protein YggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1
Length = 234
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 33 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKPLKVLVQVNT 91
++WHF+G LQSNK++ + + D + +IA L D+ + L PL VL+Q+N
Sbjct: 77 LEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINI 131
Query: 92 SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCK 151
S E SKSGI + + V P L GLM I P+ E R R
Sbjct: 132 SDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVA 186
Query: 152 ALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 187 FAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P24562|Y394_PSEAE UPF0001 protein PA0394 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0394 PE=3 SV=1
Length = 230
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 28 NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLV 87
+LP + WHF+G +QSNK + + + V V KIA L + G PL V +
Sbjct: 71 DLP--LNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCL 124
Query: 88 QVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRA 147
QVN SGE SKSG P + E V+ + PNL GLM I P T E
Sbjct: 125 QVNVSGEASKSGCAPEDLPALAEAVK-QLPNLRLRGLMAIPEP----TAERAAQHAAFAR 179
Query: 148 EVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 193
L + LSMGMS D E AI G+T VRIG+ +FG R+Y
Sbjct: 180 LRELLLDLNLGLDTLSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225
>sp|Q9ZKF2|Y395_HELPJ UPF0001 protein jhp_0986 OS=Helicobacter pylori (strain J99)
GN=jhp_0986 PE=3 SV=1
Length = 222
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 14/163 (8%)
Query: 28 NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLV 87
+LP ++WH +G LQ NK LL P L + + + K+A ++K LG L L+
Sbjct: 70 HLP--LEWHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-LNALL 124
Query: 88 QVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG--MPDYTSTPENFRTLLNC 145
QVN++ EESKSG+ P L + C L+ GLM IG D T ++F T
Sbjct: 125 QVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTT---- 180
Query: 146 RAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 188
K ++ LSMGMS DFE AI G+ +RIGS +F
Sbjct: 181 ---TKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>sp|P52056|Y556_SYNY3 UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0556 PE=3 SV=1
Length = 218
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 23/170 (13%)
Query: 31 EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN 90
+DI WHF+G LQSNKA+ + V N + V N IA LD+ L + P + L+Q+
Sbjct: 62 QDINWHFIGRLQSNKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIK 117
Query: 91 TSGEESKSGIDPSSCLGIVEHVRLRCP------NLEFSGLMTIGMPDYTSTPE---NFRT 141
+E+KSG E ++L P NL+ GLMTI +P S + F
Sbjct: 118 LLPDENKSG-------WTREELKLDLPQLELLKNLKICGLMTI-LPLGLSPGDRQLTFGE 169
Query: 142 LLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 191
L N + + ++ ELSMGMSGD+ +AI G+T +R+G+ +FG R
Sbjct: 170 LKNLATAINQQSSLS--LTELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217
>sp|O25156|Y395_HELPY UPF0001 protein HP_0395 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=HP_0395 PE=3 SV=1
Length = 222
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 14/163 (8%)
Query: 28 NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLV 87
+LP ++WH +G LQ NK LL P L + + + K+A ++K LG L L+
Sbjct: 70 HLP--LEWHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-LNALL 124
Query: 88 QVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG--MPDYTSTPENFRTLLNC 145
QVN++ EESKSG+ P L I + C +L+ GLM IG D ++F T
Sbjct: 125 QVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFIT---- 180
Query: 146 RAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 188
K ++ LSMGMS DFE AI G+ +RIGS +F
Sbjct: 181 ---TKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>sp|O31727|YLME_BACSU UPF0001 protein YlmE OS=Bacillus subtilis (strain 168) GN=ylmE PE=3
SV=1
Length = 230
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 34 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93
+WHF+G LQS KAK+++ V + ++ + L K + ++ VQVNTS
Sbjct: 73 EWHFIGSLQSRKAKSVVNSVSYIHSLDRLS-------LAKEIEKRAEGTVRCFVQVNTSL 125
Query: 94 EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG--MPDYTSTPENFRTLLNCRAEVCK 151
E SK G+ + ++ + ++ +GLMT+ D FR+L R +V K
Sbjct: 126 EPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPLTDDQDQIRSCFRSLRELRDQVQK 184
Query: 152 ALGMAEDQC-ELSMGMSGDFEQAIEMGSTSVRIGSTIFG 189
L C ELSMGMS DFE AIE G+T +RIGS++ G
Sbjct: 185 -LNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>sp|P67084|Y2172_MYCBO UPF0001 protein Mb2172c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2172c PE=3 SV=1
Length = 258
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 26/172 (15%)
Query: 33 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV------SNLGRKPLKVL 86
+ WH VG +Q NKA +L V + ++ LD+AV G + L+V
Sbjct: 95 VHWHMVGRIQRNKAGSL---ARWAHTAHSVDSSRLVTALDRAVVAALAEHRRGER-LRVY 150
Query: 87 VQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN------LEFSGLMTIGMPDYTSTP-ENF 139
VQV+ G+ S+ G+D S+ G V+ + C LE GLM G+P P E F
Sbjct: 151 VQVSLDGDGSRGGVD-STTPGAVDRI---CAQVQESEGLELVGLM--GIPPLDWDPDEAF 204
Query: 140 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 191
L ++E + M LS GMS D E A++ GST VR+G+ + GPR
Sbjct: 205 DRL---QSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>sp|P67083|Y2148_MYCTU UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis
GN=Rv2148c PE=3 SV=1
Length = 258
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 26/172 (15%)
Query: 33 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV------SNLGRKPLKVL 86
+ WH VG +Q NKA +L V + ++ LD+AV G + L+V
Sbjct: 95 VHWHMVGRIQRNKAGSL---ARWAHTAHSVDSSRLVTALDRAVVAALAEHRRGER-LRVY 150
Query: 87 VQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN------LEFSGLMTIGMPDYTSTP-ENF 139
VQV+ G+ S+ G+D S+ G V+ + C LE GLM G+P P E F
Sbjct: 151 VQVSLDGDGSRGGVD-STTPGAVDRI---CAQVQESEGLELVGLM--GIPPLDWDPDEAF 204
Query: 140 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 191
L ++E + M LS GMS D E A++ GST VR+G+ + GPR
Sbjct: 205 DRL---QSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>sp|Q8K929|Y531_BUCAP UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_531 PE=3 SV=1
Length = 229
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 24 IDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPL 83
I K ++I WHF+G +QSNK K + N D + + EKIA L+K P+
Sbjct: 66 IQKLKKYQNIIWHFIGKVQSNKTKII---AENFDWCQTIDREKIAILLNKYREKKSF-PM 121
Query: 84 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD----YTSTPENF 139
VL+Q+N S E +K+GI + + + + L PNL F G+M MP+ +N+
Sbjct: 122 NVLMQINISNEVTKNGICIKNYKKLAKTISL-MPNLNFRGIMM--MPEVEKKMIKQNDNY 178
Query: 140 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 188
+ E+ K + LS+G S D E A+ S +RIG IF
Sbjct: 179 KNGNFIFNELKKEYQSIDT---LSLGTSFDIENALLFHSNMIRIGRFIF 224
>sp|Q9CCE2|Y919_MYCLE UPF0001 protein ML0919 OS=Mycobacterium leprae (strain TN)
GN=ML0919 PE=3 SV=2
Length = 257
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 33 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK--PLKVLVQVN 90
I WH VG +Q NK ++L ++ + + A GR+ PL+V VQ++
Sbjct: 94 IHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAALAGGRREQPLQVYVQIS 153
Query: 91 TSGEESKSGIDPSSCLGIVEHVRLRCP---NLEFSGLMTIGMPDYTSTPENFRTLLNCRA 147
G+ S+ G++ ++ G V+ V + +LE GLM G+P P+ + R
Sbjct: 154 LDGDISRGGVNVTAP-GAVDRVCAQVEESKSLELVGLM--GIPPLGWNPD--QAFEQLRL 208
Query: 148 EVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 190
E + L D LS GMS DFE A++ GST VR+G+ + GP
Sbjct: 209 EHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 251
>sp|Q9RUL6|Y1368_DEIRA UPF0001 protein DR_1368 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_1368 PE=3 SV=1
Length = 209
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 34 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93
+WHF+G LQ NK K L G + +V + A + A + G+ P +L + N G
Sbjct: 69 EWHFIGPLQRNKIKYLRG----VTLVHSIEEPWQAQAIADAAAEWGQAPAVLLQRHN--G 122
Query: 94 EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKAL 153
E K G+ P ++ VR LE GLM M Y + + A + L
Sbjct: 123 EGQKHGVLPDDLPAVLREVR--ATGLEVRGLMA--MAPYDDEARAAQVFADT-ARQAQDL 177
Query: 154 GMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 188
G+ ELSMGMSGD+ A+ G+T VR+G ++F
Sbjct: 178 GL----VELSMGMSGDYPLAVAAGATLVRVGRSLF 208
>sp|P57614|Y549_BUCAI UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=BU549 PE=3 SV=1
Length = 200
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 25/183 (13%)
Query: 14 KKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDK 73
++SLIK+ + KY ++I WHF+G +QSNK K + N + V EKIA L+K
Sbjct: 35 QESLIKI-ENLKKY---KNITWHFIGKIQSNKTKKI---AQNFSWCQTVDREKIAVLLNK 87
Query: 74 -AVSNLGRKPLKVLVQVNTSGE-ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI---- 127
NL P+ VL+Q+N E ++ ID L + L PNL G+M +
Sbjct: 88 FRPKNLP--PINVLIQINNLKELQNNRYIDQYQELA---QLILSMPNLNLRGIMAVPSIK 142
Query: 128 -GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 186
+ + E +T+ N ++ LS+G S D ++++ S VRIG
Sbjct: 143 TNVIENNLQYEKIKTIFNRFKRQYSSVDT------LSLGTSVDIKESLLATSNMVRIGRN 196
Query: 187 IFG 189
IF
Sbjct: 197 IFN 199
>sp|O24748|Y2153_CORGL UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=Cgl2153 PE=3 SV=2
Length = 221
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS------NLGRKPLKV 85
D+ +H +G +QS KA ++ V V +EKIA L + V+ + L
Sbjct: 61 DMDFHMIGQIQSKKANSIARWAA---AVHSVDSEKIAEALGRGVALALDRGDRTSDELPC 117
Query: 86 LVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNC 145
+Q++ G+ S+ G S + + + +L F GLM + P PE +
Sbjct: 118 FIQLSLDGDPSRGGTPLSQVTQLADCIS-DTTHLRFEGLMCV--PPLGWGPE--KAFSQA 172
Query: 146 RAEVCKALGMAEDQC-ELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 194
R +V L D+ E S GMSGD AI+ GST VR+G+ I G R A
Sbjct: 173 R-DVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA 221
>sp|Q89A48|Y497_BUCBP UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=bbp_497 PE=3 SV=1
Length = 223
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 26 KYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKV 85
K L +I+WH++G +QSNKA + N + N+K A L+K L
Sbjct: 65 KIKLFNNIEWHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNKYRP-YSLPKLNT 120
Query: 86 LVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTP-ENFRTL-- 142
L+Q+N D + + + + NL G+M MP + +T E ++
Sbjct: 121 LIQINIRDNTINIDDDIETIKQLAKTIN-SLDNLNLRGIM--AMPYFKNTYLEQIQSYKY 177
Query: 143 LNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 188
++ ++ K D +S+G S D + A+ GST +RIGS+IF
Sbjct: 178 IHLYFDILKKKYTYID--TVSLGTSHDIQAALYSGSTLLRIGSSIF 221
>sp|B3EPX5|RIMO_CHLPB Ribosomal protein S12 methylthiotransferase RimO OS=Chlorobium
phaeobacteroides (strain BS1) GN=rimO PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 65 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 124
E I ++LD V ++ + L + K GID +G++E +R R PN+
Sbjct: 249 ENICDYLDMPVQHICDRILASM----------KRGIDKQGTIGLLESIRKRNPNIRLRTT 298
Query: 125 MTIGMPDYTSTPENFRTLLN 144
M +G P T F LL
Sbjct: 299 MIVGYPGETRA--EFEELLQ 316
>sp|B4S8Z6|RIMO_PROA2 Ribosomal protein S12 methylthiotransferase RimO
OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
GN=rimO PE=3 SV=1
Length = 433
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 56 LDMVEGV-GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRL 114
LD+++ + + I N+LD V ++ + LK + + GID +G++E +R
Sbjct: 232 LDVIDTMREHANICNYLDMPVQHISDRILKSM----------QRGIDKKGTIGLLESIRK 281
Query: 115 RCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEV 149
+ P++ M +G P T F LL A++
Sbjct: 282 KNPDIRLRTTMIVGYP--GETDREFDELLEFVAQL 314
>sp|B3EDL2|RIMO_CHLL2 Ribosomal protein S12 methylthiotransferase RimO OS=Chlorobium
limicola (strain DSM 245 / NBRC 103803) GN=rimO PE=3
SV=1
Length = 429
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 65 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 124
E + N+LD + ++ + L+ + GID + + ++E +R R P++
Sbjct: 238 ENVCNYLDMPLQHISDRILRSM----------NRGIDSTGTVRLIESIRQRNPDIRLRTT 287
Query: 125 MTIGMPDYTSTPENFRTLLNCRAE 148
M G P T E F LL AE
Sbjct: 288 MIAGYP--GETGEEFEELLQFVAE 309
>sp|O67016|RIMO_AQUAE Ribosomal protein S12 methylthiotransferase RimO OS=Aquifex
aeolicus (strain VF5) GN=rimO PE=3 SV=1
Length = 432
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 21/125 (16%)
Query: 19 KLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGN-EKIANHLDKAVSN 77
KL+ ++ E IKW + +L + D+++ V N EK+ + D + +
Sbjct: 192 KLVELLEGLEKVEGIKWIRLLYLYPTEVHE--------DLIDYVANSEKVLPYFDVPLQH 243
Query: 78 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPE 137
+ + LK + + G D ++E++R + N F +G P T + E
Sbjct: 244 VSDRVLK----------DMRRGYDGKFVRNLIENIRKKIENAVFRTTFIVGFP--TESEE 291
Query: 138 NFRTL 142
+F+ L
Sbjct: 292 DFKEL 296
>sp|P35759|VA5_POLEX Venom allergen 5 OS=Polistes exclamans PE=1 SV=2
Length = 226
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 109 VEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 168
V++ ++RCP SG+ T+ ++ P NC +V K++G E++ +L +
Sbjct: 22 VDYCKIRCP----SGIHTVCQYGESTKPSK-----NCAGKVIKSVGPTEEEKKLIVSEHN 72
Query: 169 DFEQAIEMG 177
F Q + G
Sbjct: 73 RFRQKVAQG 81
>sp|B8DNL3|TIG_DESVM Trigger factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM
19637) GN=tig PE=3 SV=1
Length = 432
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 8 LVKITYKKSLI-KLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEK 66
LVK T +K+++ KLL+ +D + LPE + +VGHL + L E G
Sbjct: 282 LVKATAQKTMLDKLLKMVD-FPLPESMVDMYVGHLLDDMRSKL----------ERQG--- 327
Query: 67 IANHLDKAVSNLGRKPLKVLVQVNTSGEE 95
K++ +LG+KP ++ +V E+
Sbjct: 328 ------KSMESLGKKPEELRAEVRPEAEQ 350
>sp|Q8RB70|HRCA_THETN Heat-inducible transcription repressor HrcA OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=hrcA PE=3 SV=1
Length = 343
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 21/136 (15%)
Query: 64 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 123
N+KIA +KA+ N K LK +T G+ + + +++ + L L+ +
Sbjct: 181 NDKIAGKSEKAIFNFLEKELK-----DTLGDMAFMADE------LIKTILLSLKQLQETD 229
Query: 124 LMTIG------MPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 175
+ T G P+Y + +NF +LL+ ++ + + L +D ++ +G FE+ E
Sbjct: 230 VYTDGTLHILDFPEYKDLNKAKNFLSLLDNKSLLNEVLEPVDDFVDVKIGRENRFEEMRE 289
Query: 176 MG--STSVRIGSTIFG 189
+ T+ +I + G
Sbjct: 290 LSVIKTTYKINDRVVG 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,381,526
Number of Sequences: 539616
Number of extensions: 2947051
Number of successful extensions: 7483
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7396
Number of HSP's gapped (non-prelim): 46
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)