Query 029062
Match_columns 199
No_of_seqs 168 out of 1165
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0325 Predicted enzyme with 100.0 2.3E-54 4.9E-59 354.2 19.0 181 5-193 38-228 (228)
2 cd06822 PLPDE_III_YBL036c_euk 100.0 3.2E-52 6.9E-57 346.4 21.9 183 4-189 33-227 (227)
3 KOG3157 Proline synthetase co- 100.0 1.4E-50 3E-55 325.1 16.2 190 6-196 43-242 (244)
4 TIGR00044 pyridoxal phosphate 100.0 1E-40 2.2E-45 278.0 20.4 179 7-191 41-229 (229)
5 cd06824 PLPDE_III_Yggs_like Py 100.0 3.8E-33 8.2E-38 231.5 20.7 167 16-190 53-224 (224)
6 cd00635 PLPDE_III_YBL036c_like 100.0 2.7E-31 5.9E-36 219.9 18.8 167 16-189 52-222 (222)
7 PF01168 Ala_racemase_N: Alani 100.0 7.7E-30 1.7E-34 209.4 16.1 164 16-192 51-218 (218)
8 cd06821 PLPDE_III_D-TA Type II 99.9 8.6E-27 1.9E-31 205.2 15.5 180 7-194 47-243 (361)
9 cd06815 PLPDE_III_AR_like_1 Ty 99.9 1.9E-25 4.2E-30 196.6 18.7 176 8-193 42-229 (353)
10 cd06820 PLPDE_III_LS_D-TA_like 99.9 9E-26 1.9E-30 198.1 16.4 169 16-194 56-235 (353)
11 cd00430 PLPDE_III_AR Type III 99.9 7E-24 1.5E-28 187.0 18.1 168 16-194 57-228 (367)
12 TIGR00492 alr alanine racemase 99.9 8.4E-24 1.8E-28 186.8 18.0 176 8-194 45-230 (367)
13 cd06817 PLPDE_III_DSD Type III 99.9 6.7E-24 1.5E-28 189.2 16.7 170 18-194 63-259 (389)
14 cd07376 PLPDE_III_DSD_D-TA_lik 99.9 1.3E-23 2.7E-28 184.0 17.9 168 16-194 45-228 (345)
15 cd06819 PLPDE_III_LS_D-TA Type 99.9 9.9E-23 2.1E-27 179.1 17.1 169 16-194 60-242 (358)
16 cd06814 PLPDE_III_DSD_D-TA_lik 99.9 7.6E-23 1.6E-27 181.9 16.0 167 17-193 63-252 (379)
17 cd06818 PLPDE_III_cryptic_DSD 99.9 1.5E-22 3.3E-27 180.0 15.6 173 16-193 56-250 (382)
18 PRK00053 alr alanine racemase; 99.9 9.8E-22 2.1E-26 173.5 16.3 162 16-194 59-227 (363)
19 cd06811 PLPDE_III_yhfX_like Ty 99.9 6.8E-21 1.5E-25 169.5 17.9 175 8-194 69-266 (382)
20 PRK13340 alanine racemase; Rev 99.9 9.3E-21 2E-25 169.8 17.8 164 16-191 96-267 (406)
21 cd06808 PLPDE_III Type III Pyr 99.9 2E-20 4.3E-25 152.0 16.0 161 16-185 42-211 (211)
22 cd06826 PLPDE_III_AR2 Type III 99.8 1.6E-19 3.5E-24 159.7 17.0 168 16-193 57-230 (365)
23 cd06812 PLPDE_III_DSD_D-TA_lik 99.8 2.3E-19 5.1E-24 158.6 17.3 176 7-194 45-241 (374)
24 cd06825 PLPDE_III_VanT Type II 99.8 1.7E-19 3.6E-24 159.9 16.1 162 16-193 57-225 (368)
25 PRK03646 dadX alanine racemase 99.8 1.2E-18 2.6E-23 153.8 14.1 159 16-193 56-217 (355)
26 cd06813 PLPDE_III_DSD_D-TA_lik 99.8 1.8E-18 4E-23 154.2 14.0 165 19-193 66-266 (388)
27 PRK11930 putative bifunctional 99.8 5.8E-18 1.3E-22 163.4 16.8 166 16-193 515-686 (822)
28 cd06827 PLPDE_III_AR_proteobac 99.8 6E-18 1.3E-22 149.3 14.9 157 16-193 54-217 (354)
29 COG3616 Predicted amino acid a 99.8 1.2E-17 2.6E-22 147.1 13.3 176 7-193 57-245 (368)
30 COG0787 Alr Alanine racemase [ 99.7 1.8E-17 4E-22 145.8 13.9 163 16-195 59-227 (360)
31 cd06810 PLPDE_III_ODC_DapDC_li 99.4 2.6E-12 5.7E-17 113.1 14.6 166 17-193 53-259 (368)
32 cd06839 PLPDE_III_Btrk_like Ty 99.4 1.7E-12 3.7E-17 114.9 12.2 141 18-167 60-218 (382)
33 COG3457 Predicted amino acid r 99.4 9.1E-12 2E-16 106.9 14.5 166 16-191 57-230 (353)
34 cd06842 PLPDE_III_Y4yA_like Ty 99.4 2.5E-11 5.4E-16 109.5 16.9 140 18-167 66-213 (423)
35 cd06828 PLPDE_III_DapDC Type I 99.4 3.6E-11 7.7E-16 106.1 16.5 139 19-166 58-214 (373)
36 TIGR01048 lysA diaminopimelate 99.4 2.3E-11 5.1E-16 109.1 15.6 139 18-166 79-236 (417)
37 cd06843 PLPDE_III_PvsE_like Ty 99.3 1.7E-10 3.7E-15 102.3 16.6 139 19-165 56-211 (377)
38 PLN02537 diaminopimelate decar 99.3 1E-10 2.3E-15 104.9 14.0 156 28-193 84-277 (410)
39 cd06841 PLPDE_III_MccE_like Ty 99.2 1.1E-09 2.3E-14 97.3 14.9 125 19-149 64-199 (379)
40 TIGR03099 dCO2ase_PEP1 pyridox 99.1 5.4E-10 1.2E-14 99.8 12.2 137 19-166 79-233 (398)
41 COG0019 LysA Diaminopimelate d 99.0 2.4E-08 5.2E-13 89.6 14.8 156 28-193 93-286 (394)
42 cd06830 PLPDE_III_ADC Type III 98.9 1.3E-07 2.9E-12 85.1 16.9 140 19-164 72-230 (409)
43 cd00622 PLPDE_III_ODC Type III 98.9 8.5E-08 1.8E-12 84.5 14.9 136 18-165 54-199 (362)
44 PF02784 Orn_Arg_deC_N: Pyrido 98.8 5.6E-08 1.2E-12 81.7 11.3 121 34-165 66-203 (251)
45 PRK11165 diaminopimelate decar 98.7 8.5E-07 1.8E-11 80.2 16.1 135 19-168 76-228 (420)
46 cd06836 PLPDE_III_ODC_DapDC_li 98.5 4.2E-06 9.1E-11 74.6 15.2 135 20-165 58-214 (379)
47 PRK05354 arginine decarboxylas 98.5 1.7E-06 3.7E-11 81.8 13.1 104 56-164 171-289 (634)
48 PLN02439 arginine decarboxylas 98.5 2.2E-06 4.7E-11 80.1 13.3 98 56-156 108-220 (559)
49 TIGR01273 speA arginine decarb 98.5 7.4E-06 1.6E-10 77.5 16.8 127 33-164 140-282 (624)
50 cd06831 PLPDE_III_ODC_like_AZI 98.3 9.9E-06 2.1E-10 72.8 13.3 158 20-192 67-256 (394)
51 cd06840 PLPDE_III_Bif_AspK_Dap 98.2 8.6E-05 1.9E-09 66.0 14.7 107 34-152 83-202 (368)
52 TIGR01047 nspC carboxynorsperm 98.1 0.00012 2.6E-09 65.5 14.9 114 35-165 73-199 (380)
53 PRK08961 bifunctional aspartat 97.9 0.00039 8.5E-09 68.3 14.5 117 34-165 574-703 (861)
54 cd06829 PLPDE_III_CANSDC Type 97.3 0.0049 1.1E-07 54.3 12.1 82 34-130 70-164 (346)
55 KOG0622 Ornithine decarboxylas 97.2 0.0041 9E-08 55.8 11.2 112 34-156 125-246 (448)
56 PRK08091 ribulose-phosphate 3- 95.4 0.92 2E-05 38.0 13.9 72 119-192 141-215 (228)
57 COG0036 Rpe Pentose-5-phosphat 94.9 0.8 1.7E-05 38.1 12.1 150 33-194 43-207 (220)
58 PRK14057 epimerase; Provisiona 93.7 2.9 6.3E-05 35.6 13.3 90 97-192 134-229 (254)
59 PF00834 Ribul_P_3_epim: Ribul 93.6 0.21 4.6E-06 40.9 6.2 139 32-190 59-200 (201)
60 PRK08745 ribulose-phosphate 3- 93.2 3.2 7E-05 34.6 12.6 72 119-192 133-207 (223)
61 PRK08005 epimerase; Validated 91.5 6.6 0.00014 32.4 12.3 69 119-193 129-200 (210)
62 COG1166 SpeA Arginine decarbox 88.5 1.5 3.3E-05 41.3 6.7 96 56-156 187-299 (652)
63 PRK08883 ribulose-phosphate 3- 87.9 14 0.00031 30.6 11.9 67 124-192 134-203 (220)
64 COG0167 PyrD Dihydroorotate de 87.6 11 0.00024 33.1 11.2 112 64-193 145-279 (310)
65 PRK09722 allulose-6-phosphate 85.0 22 0.00047 29.8 13.8 70 119-190 131-204 (229)
66 KOG3111 D-ribulose-5-phosphate 81.1 30 0.00064 28.6 14.0 72 117-194 133-207 (224)
67 cd02803 OYE_like_FMN_family Ol 79.5 22 0.00048 30.6 9.8 115 70-194 197-321 (327)
68 cd06533 Glyco_transf_WecG_TagA 78.9 22 0.00047 28.0 8.9 90 57-171 24-113 (171)
69 COG0386 BtuE Glutathione perox 78.7 4.3 9.4E-05 32.1 4.6 37 84-125 26-64 (162)
70 cd04738 DHOD_2_like Dihydrooro 74.1 60 0.0013 28.3 11.3 100 82-192 202-317 (327)
71 TIGR00696 wecB_tagA_cpsF bacte 73.5 8.7 0.00019 30.8 5.3 87 59-171 28-114 (177)
72 COG3454 Metal-dependent hydrol 73.4 7.4 0.00016 34.5 5.1 88 31-130 67-168 (377)
73 PRK05286 dihydroorotate dehydr 73.3 40 0.00086 29.7 9.9 97 83-192 212-326 (344)
74 cd02932 OYE_YqiM_FMN Old yello 72.4 28 0.00062 30.3 8.7 114 72-196 212-332 (336)
75 PRK13307 bifunctional formalde 70.3 53 0.0012 29.8 10.0 109 58-192 255-366 (391)
76 cd02930 DCR_FMN 2,4-dienoyl-Co 70.0 29 0.00062 30.6 8.2 115 70-194 193-316 (353)
77 PRK13813 orotidine 5'-phosphat 69.7 57 0.0012 26.3 11.1 134 33-192 60-200 (215)
78 PLN02495 oxidoreductase, actin 68.5 51 0.0011 29.8 9.5 52 139-192 253-307 (385)
79 PTZ00170 D-ribulose-5-phosphat 67.8 54 0.0012 27.1 9.0 137 33-192 68-209 (228)
80 TIGR02356 adenyl_thiF thiazole 66.0 30 0.00066 27.9 7.0 62 16-80 73-137 (202)
81 cd04734 OYE_like_3_FMN Old yel 64.9 96 0.0021 27.3 10.5 121 65-194 191-325 (343)
82 PLN02334 ribulose-phosphate 3- 64.0 80 0.0017 25.9 13.2 68 119-192 140-210 (229)
83 COG2100 Predicted Fe-S oxidore 64.0 1E+02 0.0022 27.7 10.1 82 62-164 141-222 (414)
84 TIGR02355 moeB molybdopterin s 62.2 34 0.00074 28.6 6.8 62 16-80 76-140 (240)
85 cd04733 OYE_like_2_FMN Old yel 58.5 1.3E+02 0.0027 26.3 10.2 113 72-196 207-334 (338)
86 PRK05690 molybdopterin biosynt 57.8 42 0.0009 28.1 6.6 62 16-80 84-148 (245)
87 cd01483 E1_enzyme_family Super 57.5 56 0.0012 24.4 6.8 62 16-80 51-115 (143)
88 TIGR03128 RuMP_HxlA 3-hexulose 56.3 1E+02 0.0022 24.5 9.7 32 161-192 162-194 (206)
89 cd02929 TMADH_HD_FMN Trimethyl 55.6 85 0.0018 28.0 8.6 114 73-194 209-329 (370)
90 cd04735 OYE_like_4_FMN Old yel 53.8 78 0.0017 27.9 8.0 104 82-193 215-322 (353)
91 cd04741 DHOD_1A_like Dihydroor 53.3 1.5E+02 0.0032 25.5 11.8 112 64-189 141-277 (294)
92 COG4573 GatZ Predicted tagatos 52.9 67 0.0015 28.8 7.2 107 58-169 18-135 (426)
93 cd01492 Aos1_SUMO Ubiquitin ac 51.7 58 0.0013 26.3 6.3 62 16-82 73-137 (197)
94 TIGR01740 pyrF orotidine 5'-ph 51.3 1.3E+02 0.0028 24.4 11.2 137 32-193 55-205 (213)
95 PLN02826 dihydroorotate dehydr 51.0 2E+02 0.0042 26.3 10.8 34 159-192 342-378 (409)
96 cd00757 ThiF_MoeB_HesA_family 50.0 74 0.0016 26.1 6.9 62 16-80 73-137 (228)
97 PRK08644 thiamine biosynthesis 49.6 70 0.0015 26.1 6.6 62 16-80 79-144 (212)
98 PF11823 DUF3343: Protein of u 47.9 57 0.0012 21.8 4.9 63 57-127 3-72 (73)
99 COG1902 NemA NADH:flavin oxido 47.9 2.1E+02 0.0045 25.7 11.5 122 64-193 198-327 (363)
100 PF03808 Glyco_tran_WecB: Glyc 47.2 62 0.0013 25.4 5.7 56 57-125 26-81 (172)
101 cd01485 E1-1_like Ubiquitin ac 47.0 86 0.0019 25.2 6.6 62 16-80 73-139 (198)
102 PF03460 NIR_SIR_ferr: Nitrite 45.8 42 0.00091 21.9 3.9 46 64-113 22-67 (69)
103 cd01304 FMDH_A Formylmethanofu 45.2 1.9E+02 0.0042 27.4 9.4 66 60-131 203-276 (541)
104 PRK07188 nicotinate phosphorib 44.5 1.4E+02 0.003 26.6 8.1 17 96-112 257-273 (352)
105 PF00899 ThiF: ThiF family; I 43.1 81 0.0018 23.3 5.6 62 16-80 54-118 (135)
106 cd02810 DHOD_DHPD_FMN Dihydroo 43.1 2E+02 0.0044 24.1 12.4 114 64-192 146-280 (289)
107 cd02931 ER_like_FMN Enoate red 42.2 2.5E+02 0.0055 25.0 10.4 123 65-195 201-346 (382)
108 PRK07534 methionine synthase I 42.1 1.6E+02 0.0035 26.0 8.1 63 58-127 149-213 (336)
109 COG0836 {ManC} Mannose-1-phosp 41.6 2.6E+02 0.0055 24.9 10.7 120 45-187 40-163 (333)
110 PRK13307 bifunctional formalde 41.0 2.3E+02 0.005 25.7 9.0 100 9-130 133-239 (391)
111 cd01487 E1_ThiF_like E1_ThiF_l 40.2 1.4E+02 0.003 23.5 6.8 62 16-80 50-115 (174)
112 PRK05600 thiamine biosynthesis 40.1 96 0.0021 27.7 6.4 62 16-80 93-157 (370)
113 PRK11170 nagA N-acetylglucosam 39.7 2.8E+02 0.006 24.8 11.1 80 82-181 125-214 (382)
114 PRK10605 N-ethylmaleimide redu 39.6 2.7E+02 0.0059 24.7 10.2 103 77-194 222-331 (362)
115 KOG1436 Dihydroorotate dehydro 39.2 1.6E+02 0.0034 26.4 7.3 99 79-192 250-368 (398)
116 cd04726 KGPDC_HPS 3-Keto-L-gul 38.3 1.9E+02 0.0042 22.6 11.7 34 160-193 161-195 (202)
117 COG3589 Uncharacterized conser 37.7 38 0.00082 30.2 3.3 88 96-186 2-100 (360)
118 COG5016 Pyruvate/oxaloacetate 37.3 1.6E+02 0.0034 27.2 7.2 42 143-184 188-231 (472)
119 cd02429 PTH2_like Peptidyl-tRN 36.5 1.3E+02 0.0029 22.4 5.7 47 55-103 55-101 (116)
120 PRK07878 molybdopterin biosynt 36.5 1.4E+02 0.003 26.8 6.9 62 16-80 94-158 (392)
121 PLN02489 homocysteine S-methyl 36.3 3E+02 0.0065 24.2 9.3 65 58-127 185-250 (335)
122 PF03437 BtpA: BtpA family; I 36.1 1.6E+02 0.0035 25.0 6.9 55 136-190 62-116 (254)
123 cd03174 DRE_TIM_metallolyase D 35.9 2.4E+02 0.0053 23.0 10.1 113 64-191 113-229 (265)
124 PRK08223 hypothetical protein; 35.7 1.1E+02 0.0024 26.5 5.9 62 16-80 79-145 (287)
125 COG1029 FwdB Formylmethanofura 34.2 1.7E+02 0.0036 26.6 6.8 33 91-124 217-254 (429)
126 TIGR02066 dsrB sulfite reducta 34.1 3.3E+02 0.0071 24.1 8.8 50 62-116 40-89 (341)
127 PRK05581 ribulose-phosphate 3- 34.1 2.4E+02 0.0052 22.4 15.6 70 121-192 134-206 (220)
128 TIGR01163 rpe ribulose-phospha 33.7 2.3E+02 0.0051 22.2 15.0 69 122-192 130-201 (210)
129 cd04747 OYE_like_5_FMN Old yel 33.6 2.8E+02 0.0061 24.7 8.3 119 66-195 195-339 (361)
130 PRK13523 NADPH dehydrogenase N 33.4 2.4E+02 0.0052 24.8 7.8 100 83-193 208-314 (337)
131 PRK06801 hypothetical protein; 33.3 2.6E+02 0.0057 24.1 7.8 114 64-191 113-240 (286)
132 TIGR01362 KDO8P_synth 3-deoxy- 30.4 3.5E+02 0.0076 23.2 7.9 27 99-127 126-156 (258)
133 PRK03692 putative UDP-N-acetyl 30.2 1.2E+02 0.0026 25.5 5.2 58 99-169 112-169 (243)
134 PRK08255 salicylyl-CoA 5-hydro 29.7 5.1E+02 0.011 25.4 10.1 117 65-193 601-726 (765)
135 PRK08123 histidinol-phosphatas 28.7 2.1E+02 0.0046 24.0 6.5 43 67-116 198-241 (270)
136 PF00682 HMGL-like: HMGL-like 28.7 67 0.0014 26.2 3.3 119 56-191 84-220 (237)
137 TIGR00736 nifR3_rel_arch TIM-b 28.2 3.5E+02 0.0077 22.5 11.1 104 63-190 118-226 (231)
138 TIGR03693 ocin_ThiF_like putat 28.1 2.4E+02 0.0053 27.3 7.2 62 16-80 167-232 (637)
139 PF04308 DUF458: Protein of un 27.9 72 0.0016 24.8 3.1 46 61-113 72-120 (144)
140 PF01729 QRPTase_C: Quinolinat 27.6 99 0.0022 24.5 4.0 50 140-191 112-162 (169)
141 PRK07329 hypothetical protein; 27.6 3.5E+02 0.0076 22.3 8.0 76 67-156 166-241 (246)
142 cd00755 YgdL_like Family of ac 27.4 3.1E+02 0.0068 22.7 7.1 63 16-80 63-128 (231)
143 PF00701 DHDPS: Dihydrodipicol 27.3 2.4E+02 0.0053 23.7 6.6 24 102-129 82-105 (289)
144 PRK12822 phospho-2-dehydro-3-d 27.2 2.3E+02 0.005 25.4 6.5 57 63-126 241-301 (356)
145 cd01568 QPRTase_NadC Quinolina 26.7 1.3E+02 0.0029 25.5 4.9 31 160-190 230-261 (269)
146 PRK08762 molybdopterin biosynt 26.3 2.7E+02 0.006 24.6 7.0 62 16-80 187-251 (376)
147 PF04748 Polysacc_deac_2: Dive 26.0 3.7E+02 0.008 22.0 7.5 116 66-191 32-153 (213)
148 COG4090 Uncharacterized protei 25.6 62 0.0014 25.0 2.3 38 83-125 86-123 (154)
149 COG1922 WecG Teichoic acid bio 25.2 2E+02 0.0044 24.5 5.6 53 60-125 89-141 (253)
150 COG2040 MHT1 Homocysteine/sele 25.1 4.2E+02 0.0091 23.2 7.5 78 43-128 137-217 (300)
151 PRK12756 phospho-2-dehydro-3-d 25.0 2.5E+02 0.0054 25.1 6.3 56 64-126 241-300 (348)
152 PLN02591 tryptophan synthase 25.0 2.2E+02 0.0047 24.1 5.8 32 97-130 58-89 (250)
153 cd07943 DRE_TIM_HOA 4-hydroxy- 24.9 4.1E+02 0.0088 22.1 8.9 134 40-190 85-223 (263)
154 PRK12858 tagatose 1,6-diphosph 24.8 4.1E+02 0.0089 23.5 7.7 34 159-192 244-284 (340)
155 PRK05597 molybdopterin biosynt 24.7 3E+02 0.0065 24.3 6.9 62 16-80 80-144 (355)
156 PRK06806 fructose-bisphosphate 24.4 4.5E+02 0.0098 22.5 7.8 110 63-190 112-236 (281)
157 cd00928 Cyt_c_Oxidase_VIIa Cyt 24.1 88 0.0019 20.3 2.5 26 16-41 1-26 (55)
158 cd02654 nuc_hydro_CjNH nuc_hyd 23.9 4E+02 0.0087 23.1 7.5 41 84-131 1-41 (318)
159 PRK07688 thiamine/molybdopteri 23.9 3.7E+02 0.0079 23.7 7.3 62 16-80 78-142 (339)
160 PRK12475 thiamine/molybdopteri 23.7 3.5E+02 0.0076 23.8 7.1 62 16-80 78-142 (338)
161 cd02933 OYE_like_FMN Old yello 23.7 5E+02 0.011 22.7 10.3 119 64-194 201-324 (338)
162 TIGR01931 cysJ sulfite reducta 23.3 4.1E+02 0.009 25.3 7.9 32 98-130 118-150 (597)
163 KOG2499 Beta-N-acetylhexosamin 23.2 1.3E+02 0.0029 28.2 4.4 56 33-93 215-274 (542)
164 PRK06740 histidinol-phosphatas 22.6 5.2E+02 0.011 22.6 8.3 74 67-156 240-316 (331)
165 TIGR03821 AblA_like_1 lysine-2 22.5 2.1E+02 0.0045 25.0 5.4 22 101-124 249-270 (321)
166 COG2875 CobM Precorrin-4 methy 22.2 4.2E+02 0.0091 22.6 6.8 64 44-126 20-83 (254)
167 cd04742 NPD_FabD 2-Nitropropan 22.1 3.6E+02 0.0078 24.7 6.9 53 136-188 197-252 (418)
168 PRK08444 hypothetical protein; 22.0 3.8E+02 0.0082 23.8 7.0 53 64-123 81-133 (353)
169 TIGR00221 nagA N-acetylglucosa 21.8 5.8E+02 0.013 22.8 10.6 88 82-190 125-222 (380)
170 PRK07411 hypothetical protein; 21.7 3.8E+02 0.0083 24.0 7.0 62 16-80 90-154 (390)
171 PRK08328 hypothetical protein; 21.7 4.2E+02 0.0091 21.7 6.9 39 39-80 105-144 (231)
172 cd00954 NAL N-Acetylneuraminic 21.4 3.9E+02 0.0085 22.6 6.8 24 56-79 71-96 (288)
173 CHL00200 trpA tryptophan synth 21.2 2.2E+02 0.0049 24.1 5.2 31 97-129 71-101 (263)
174 TIGR02814 pfaD_fam PfaD family 20.5 4.1E+02 0.0088 24.6 7.0 52 137-188 203-257 (444)
175 TIGR03822 AblA_like_2 lysine-2 20.3 3.6E+02 0.0079 23.4 6.5 25 101-127 243-267 (321)
176 PRK07328 histidinol-phosphatas 20.3 4.6E+02 0.01 21.9 6.9 76 66-156 177-253 (269)
177 PRK09485 mmuM homocysteine met 20.2 5.4E+02 0.012 22.1 7.5 65 58-127 158-223 (304)
178 TIGR00683 nanA N-acetylneurami 20.1 4.2E+02 0.0092 22.5 6.8 16 64-79 81-96 (290)
179 PHA02104 hypothetical protein 20.0 57 0.0012 22.4 1.0 17 175-191 40-56 (89)
No 1
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=2.3e-54 Score=354.16 Aligned_cols=181 Identities=41% Similarity=0.609 Sum_probs=167.5
Q ss_pred hhHHHHHHHhc-----cCCcHHHHHHhh-cCCC--CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHH
Q 029062 5 TVALVKITYKK-----SLIKLLRFIDKY-NLPE--DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS 76 (199)
Q Consensus 5 ~~~~~~~~~~~-----~~n~~qE~~~k~-~~~~--~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~ 76 (199)
.++-+.+.|++ ||||+||+.+|+ .|++ +|.|||||+||+||++.++ ++++++|||||++.|.+|++++.
T Consensus 38 ~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~LQsNK~k~v~---~~~~~ihSlDr~klA~~l~kra~ 114 (228)
T COG0325 38 PAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGPLQSNKVKLVA---ENFDWIHSLDRLKLAKELNKRAL 114 (228)
T ss_pred CHHHHHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEechhhhhHHHHHH---hhcceeeecCHHHHHHHHHHHHH
Confidence 45677888888 999999999999 8876 4999999999999999999 56999999999999999999988
Q ss_pred hcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhC
Q 029062 77 NLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALG 154 (199)
Q Consensus 77 ~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g 154 (199)
..++ +++|+||||+++|.+|+|++|+++.+++..+. .+|+|+++|||||+|.+.+ +...+|+.++++++.+.+++
T Consensus 115 ~~~~-~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~- 191 (228)
T COG0325 115 ELPK-PLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKY- 191 (228)
T ss_pred hCCC-CceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhc-
Confidence 8886 89999999999999999999999999999999 9999999999999998654 46789999999999999874
Q ss_pred CCCCCCEEEecCCcCHHHHHHcCCCEEecCccccCCCcc
Q 029062 155 MAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 155 ~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
. ++.+||||||+||++||++|+|+||+||+|||.|+|
T Consensus 192 ~--~~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~ 228 (228)
T COG0325 192 P--PIDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY 228 (228)
T ss_pred C--CCCeecCcCcccHHHHHHcCCCEEEEcHHhhCCCCC
Confidence 3 379999999999999999999999999999999987
No 2
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=100.00 E-value=3.2e-52 Score=346.38 Aligned_cols=183 Identities=57% Similarity=0.918 Sum_probs=165.4
Q ss_pred hhhHHHHHHHhc-----cCCcHHHHHHhh-cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHh
Q 029062 4 VTVALVKITYKK-----SLIKLLRFIDKY-NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSN 77 (199)
Q Consensus 4 ~~~~~~~~~~~~-----~~n~~qE~~~k~-~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~ 77 (199)
+.++.+++.|+. ||||+||+.+|+ .|++++.|||||+||+||++++++. ++++++|||||++.|++|+++|.+
T Consensus 33 ~~~~~i~~~~~~G~~~fGENrvQe~~~K~~~l~~~i~wHfIG~LQ~NK~k~i~~~-~~~~~ihsvDs~~la~~L~~~a~~ 111 (227)
T cd06822 33 KPAELIKEAYDAGQRHFGENYVQELIEKAPDLPIDIKWHFIGHLQSNKVKKLLKV-PNLYMVETVDSEKLADKLNKAWEK 111 (227)
T ss_pred CCHHHHHHHHHcCCccccCcHHHHHHHHHHhccCCceEEEECCCchhhHHHHhcc-ccccEEEecCCHHHHHHHHHHHHH
Confidence 357788888988 999999999999 8877899999999999999999721 468999999999999999999999
Q ss_pred c--CCCCceEEEEEeCCCCCCccCCChhhHHHHHHHH-HhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHHHHH
Q 029062 78 L--GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV-RLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCK 151 (199)
Q Consensus 78 ~--g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i-~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~l~~ 151 (199)
. ++ +++||||||+|+|.+|+|++|+++.++++.| . .+|||+|+|||||+|++++ +.++.|+.+.++++.|++
T Consensus 112 ~~~~~-~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~-~~~~L~l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~ 189 (227)
T cd06822 112 LGERE-PLKVMVQVNTSGEESKSGLEPSEAVELVKHIIE-ECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCE 189 (227)
T ss_pred hcCCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHh-hCCCceEEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8 88 9999999999999999999999999999999 5 7999999999999999654 357899999999999988
Q ss_pred HhCCCCCCCEEEecCCcCHHHHHHcCCCEEecCccccC
Q 029062 152 ALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 189 (199)
Q Consensus 152 ~~g~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifg 189 (199)
.+|++..+.++|||||+||+.|+++|+|||||||+|||
T Consensus 190 ~~g~~~~~~~lSmGmS~D~~~Ai~~GsT~VRiGt~IFg 227 (227)
T cd06822 190 KLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred hcCCCCCCCEEEecccHhHHHHHHcCCCEEeCCchhcC
Confidence 65654225799999999999999999999999999997
No 3
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=100.00 E-value=1.4e-50 Score=325.14 Aligned_cols=190 Identities=57% Similarity=0.869 Sum_probs=173.7
Q ss_pred hHHHHHHHhc-----cCCcHHHHHHhh-cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcC
Q 029062 6 VALVKITYKK-----SLIKLLRFIDKY-NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG 79 (199)
Q Consensus 6 ~~~~~~~~~~-----~~n~~qE~~~k~-~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g 79 (199)
++++.+.|.+ |||||||+++|. .+|++|+|||||++|+||+++++. .|+.-.+++||+++.|..+++...+.|
T Consensus 43 a~~i~~~Y~~GqR~FGENYVQEl~eKap~lp~DI~WHFIG~lQsnK~kkl~s-vpnL~~vetVDseK~A~~ld~a~~k~g 121 (244)
T KOG3157|consen 43 ASLIIEAYDAGQRHFGENYVQELIEKAPLLPDDIKWHFIGHLQSNKCKKLLS-VPNLYSVETVDSEKKARKLDSAWSKLG 121 (244)
T ss_pred HHHHHHHHHcCcChhhHHHHHHHHHhcccCcccceeeeechhhhcccchhcc-CCceEEEEecchHHHHHHHHHHHHhcC
Confidence 4556678887 899999999999 889999999999999999999986 588899999999999999999999988
Q ss_pred C-CCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHHHHHHhCC
Q 029062 80 R-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGM 155 (199)
Q Consensus 80 ~-~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~l~~~~g~ 155 (199)
. .|+.|+|||||++|.+|+|+.|.++++++++|++.|++|+|.|||||++.+.+ .....|+.|..+++.+.+++|+
T Consensus 122 ~~~PL~V~VQvNTSGEd~K~Giepse~~~l~~~i~~~c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~r~~ic~~lg~ 201 (244)
T KOG3157|consen 122 PDNPLKVLVQVNTSGEDSKSGIEPSEAPELAEHIKSECKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKLRESICKKLGI 201 (244)
T ss_pred CCCCeEEEEEeecCCccccCCCChhhhHHHHHHHHHhCCcceeeeeEEeccccccccCCCCccHHHHHHHHHHHHHHhCC
Confidence 6 69999999999999999999999999999999856999999999999998544 2345699999999999998899
Q ss_pred CCCCCEEEecCCcCHHHHHHcCCCEEecCccccCCCccccc
Q 029062 156 AEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196 (199)
Q Consensus 156 ~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~~~~ 196 (199)
+.+-..||||||+||..||+.|+|.||+||.|||.|+|..+
T Consensus 202 ~~dq~eLSMGMS~DF~~AIe~Gst~VRvGStIFG~R~y~kk 242 (244)
T KOG3157|consen 202 PADQVELSMGMSADFLLAIEQGSTNVRVGSTIFGAREYKKK 242 (244)
T ss_pred ChHHhhhhcccchhHHHHHHhCCceEEeccccccCCCCCCC
Confidence 86557899999999999999999999999999999999876
No 4
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=100.00 E-value=1e-40 Score=277.97 Aligned_cols=179 Identities=39% Similarity=0.613 Sum_probs=157.6
Q ss_pred HHHHHHHhc-----cCCcHHHHHHhh-cCCC--CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhc
Q 029062 7 ALVKITYKK-----SLIKLLRFIDKY-NLPE--DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL 78 (199)
Q Consensus 7 ~~~~~~~~~-----~~n~~qE~~~k~-~~~~--~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~ 78 (199)
+.+...++. ++||+||+.+|+ .+++ +++|||||++|+|+...++ +.++++++|||.+.++.|++++.+.
T Consensus 41 ~~i~~l~~~G~~~fg~~~~~Ea~~k~~~lr~~~~~~~~~ig~~q~~~~~~~~---~~~~l~~~vds~~~~~~l~~~a~~~ 117 (229)
T TIGR00044 41 SAIQIAYDAGQRAFGENYVQELVEKIKLLEDLGKLEWHFIGPLQSNKDRLVV---ENFDWVHTIDSLKIAKKLNEQREKL 117 (229)
T ss_pred HHHHHHHHcCCccccEEcHHHHHHHHHHhcccCCceEEEECCCcchHHHHHh---hhcCEEEEECCHHHHHHHHHHHHhc
Confidence 344445554 899999999998 6643 6899999999999999887 5689999999999999999999988
Q ss_pred CCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhCCC
Q 029062 79 GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMA 156 (199)
Q Consensus 79 g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g~~ 156 (199)
++ +++|||+||||++|+|+|+.|+++.++++.+. .+|+|++.|||||++++++ +.++.|+.+..+++.|++. +..
T Consensus 118 ~~-~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~-~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 194 (229)
T TIGR00044 118 QP-PLNVLLQINISDEESKSGIQPEELLELAIQIE-ELKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQIKQD-SPF 194 (229)
T ss_pred CC-CceEEEEEECCCCCCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 97 99999999998779999999988999999998 8999999999999998543 3567899999999999886 542
Q ss_pred CCCCEEEecCCcCHHHHHHcCCCEEecCccccCCC
Q 029062 157 EDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 157 ~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~ 191 (199)
.++..+|||||+||+.|+++|+|+||||+||||||
T Consensus 195 ~~~~~lS~G~t~~~~~a~~~g~tevR~G~~if~dr 229 (229)
T TIGR00044 195 GTIDTLSMGMSDDFEEAIAAGATMVRIGTAIFGAR 229 (229)
T ss_pred CCCCEEeeeCcHhHHHHHHCCCCEEECChHHcCCC
Confidence 13689999999999999999999999999999986
No 5
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=100.00 E-value=3.8e-33 Score=231.55 Aligned_cols=167 Identities=41% Similarity=0.592 Sum_probs=144.4
Q ss_pred cCCcHHHHHHhh-cCCC--CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 16 SLIKLLRFIDKY-NLPE--DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~--~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
++|++|||.+|+ .|.+ .+.|||+|++|+++....+ ..++++++|||.+.++.|++.+.+.|+ +++|||+||++
T Consensus 53 gva~~~Ea~~k~~~Lr~~g~~~~~~lg~~~~~~~~~~~---~~~~~~~~I~s~~~~~~l~~~a~~~g~-~~~v~l~id~~ 128 (224)
T cd06824 53 GENYVQEALEKIEALRDLQDIEWHFIGPIQSNKTKLIA---ENFDWVHSVDRLKIAKRLNDQRPAGLP-PLNVCIQVNIS 128 (224)
T ss_pred CcChHHHHHHHHHHhccCCCeeEEEEcCchhhhHHHHH---hhCCEEEecCCHHHHHHHHHHHHhcCC-CCcEEEEEEcC
Confidence 899999999988 6765 4899999999999866665 337899999999999999999988887 89999999997
Q ss_pred CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCH
Q 029062 93 GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF 170 (199)
Q Consensus 93 ~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~ 170 (199)
.+|+|+|++|+++.++++.+. .+|+|++.|||||+++..+ ...+.|+.+.++.+.+++. |+. +..+|+|||+++
T Consensus 129 ~Gm~R~Gi~~~~~~~~~~~i~-~~~~l~l~Gl~tH~a~~~~~~~q~~~f~~~~~~~~~l~~~-~~~--~~~is~gnS~~~ 204 (224)
T cd06824 129 GEDSKSGVAPEDAAELAEAIS-QLPNLRLRGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQ-YPD--LDTLSMGMSGDL 204 (224)
T ss_pred CCCCCCCCCHHHHHHHHHHHh-cCCCCcEEEEEEeCCCCCChHHHHHHHHHHHHHHHHHHhh-CCC--CCEEeCcCcHhH
Confidence 779999999988999999998 8999999999999988544 2345666666667778765 664 468999999999
Q ss_pred HHHHHcCCCEEecCccccCC
Q 029062 171 EQAIEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 171 ~~a~~~g~t~VR~Gs~ifgd 190 (199)
..+.+.|+||||||+++||+
T Consensus 205 ~~~~~~~~~~vRpG~~lyG~ 224 (224)
T cd06824 205 EAAIAAGSTMVRIGTAIFGA 224 (224)
T ss_pred HHHHHcCCCEEEcChHhcCC
Confidence 99888999999999999985
No 6
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.98 E-value=2.7e-31 Score=219.87 Aligned_cols=167 Identities=46% Similarity=0.686 Sum_probs=149.8
Q ss_pred cCCcHHHHHHhh-cCCC-CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKY-NLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~-~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+.++++||+..+ .+.. .+.|+++|+.+.++++.+++ ..+++++|||.+.++.|++.+.+.|+ +++|||+||||+
T Consensus 52 ~va~l~Ea~~lr~~~~~~~~~~~llg~~~~~~~~~~~~---~~~~~~~v~s~~~l~~l~~~a~~~~~-~~~v~lkvdtG~ 127 (222)
T cd00635 52 GENRVQEALDKAEELPDPDIEWHFIGHLQTNKVKYAVR---LFDLIHSVDSLKLAEELNKRAEKEGR-VLDVLVQVNIGG 127 (222)
T ss_pred CCCcHHHHHHHHHHccCCCceEEEECccccccHHHHHh---hCCEEEEcCCHHHHHHHHHHHHhcCC-CCcEEEEEecCC
Confidence 789999999988 4443 68899999999999999883 35899999999999999999998887 999999999997
Q ss_pred CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH
Q 029062 94 EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE 171 (199)
Q Consensus 94 e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~ 171 (199)
+++|+|++++++.++++.+. .+|+|++.|+|||+++.++ ...+.++.+.++.+.+++.+|+. +..+|+|||+||+
T Consensus 128 ~~~R~G~~~~~~~~~~~~i~-~~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~is~G~t~~~~ 204 (222)
T cd00635 128 EESKSGVAPEELEELLEEIA-ALPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVN--LKELSMGMSGDFE 204 (222)
T ss_pred CCCCCCCCHHHHHHHHHHHH-cCCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCC--CCEEECcccHhHH
Confidence 67999999999999999998 8999999999999988543 45778999999999999875576 5899999999999
Q ss_pred HHHHcCCCEEecCccccC
Q 029062 172 QAIEMGSTSVRIGSTIFG 189 (199)
Q Consensus 172 ~a~~~g~t~VR~Gs~ifg 189 (199)
.+.+.|+|++|||+|+||
T Consensus 205 ~~~~~~~~~~r~G~~if~ 222 (222)
T cd00635 205 IAIEEGATLVRIGTAIFG 222 (222)
T ss_pred HHHHcCCCEEEeChhhcC
Confidence 999999999999999997
No 7
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.97 E-value=7.7e-30 Score=209.37 Aligned_cols=164 Identities=26% Similarity=0.350 Sum_probs=145.3
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
+.++++||+..+... .++.++++.+.++++.+++ . +++++|||.+.++.|++.+.+.++ +++|||+|||| +
T Consensus 51 ~va~~~Ea~~lr~~g--~~il~l~~~~~~~~~~~~~---~-~~~~~v~s~~~~~~l~~~~~~~~~-~~~v~l~vdtG--~ 121 (218)
T PF01168_consen 51 AVATLEEAEELREAG--APILVLGPIPPEELEELVE---Y-NIIPTVDSLEQLEALSKAAKKQGK-PLKVHLKVDTG--M 121 (218)
T ss_dssp EESSHHHHHHHHHTT--SEEEEESESTGGGHHHHHH---T-TEEEEE-SHHHHHHHHHHHHHHTS-TEEEEEEBESS--S
T ss_pred EEeeHHHhhhHHhcC--CceEEEcCCChhhHHHHhh---C-cEEEEEchhhHHHHHHHHHHHcCC-ceEEEEeeccc--c
Confidence 889999999888333 6888999999999999984 3 899999999999999999999997 99999999999 7
Q ss_pred CccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC--hH-HHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHH
Q 029062 96 SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--TP-ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ 172 (199)
Q Consensus 96 ~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~--~~-~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~ 172 (199)
+|+|+.|+++.++++.+. .+|+|++.|||||+++.++. .. ++|+.|.++++.+++. |++ +..+|+|+|+++..
T Consensus 122 ~R~G~~~~~~~~l~~~i~-~~~~l~l~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~-~~~--~~~~s~g~S~~~~~ 197 (218)
T PF01168_consen 122 GRLGVRPEELEELAEAIK-ALPNLRLEGLMTHFAHADDPDYTNQEQFERFRELAEALEKA-GIP--PPIVSMGNSAAFLL 197 (218)
T ss_dssp SSSSBECHHHHHHHHHHH-HTTTEEEEEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHT-TTT--CSEEEEEBHHHHHH
T ss_pred cccCCCHHHHHHHHHHHh-cCCCceEeeEeccccccCCHHHHHHHHHHHHHHHHHHHHhc-cCC--CceecCCCCcchhh
Confidence 899999999999999999 89999999999999996542 33 4999999999999886 655 47999999999998
Q ss_pred HH-HcCCCEEecCccccCCCc
Q 029062 173 AI-EMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 173 a~-~~g~t~VR~Gs~ifgd~~ 192 (199)
+. ..|.|+||||++|||++|
T Consensus 198 ~~~~~~~~~vR~G~~lyG~~P 218 (218)
T PF01168_consen 198 APAHEGITMVRPGIALYGYRP 218 (218)
T ss_dssp HGGTTTTSEEEESGGGGT-HS
T ss_pred cccccCCcEEEechhhhCCCC
Confidence 87 788999999999999976
No 8
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.95 E-value=8.6e-27 Score=205.17 Aligned_cols=180 Identities=18% Similarity=0.249 Sum_probs=147.2
Q ss_pred HHHHHHHhc-----cCCcHHHHHHhh--cCCC-CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhc
Q 029062 7 ALVKITYKK-----SLIKLLRFIDKY--NLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL 78 (199)
Q Consensus 7 ~~~~~~~~~-----~~n~~qE~~~k~--~~~~-~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~ 78 (199)
+.++..+++ ..++++||+..+ ++++ .+.||++|+.+.+.++.+.+ .+..+++++|||.+.++.|++.+.+.
T Consensus 47 ~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ill~~~~~~~~~~~~~~l~~~-~~~~~~~~~Vds~~~l~~l~~~a~~~ 125 (361)
T cd06821 47 EIVRLQLEAGITKFKCATIAEAEMLAEAGAPDVLLAYPLVGPNIERFLELAKK-YPGTRFSALVDDLEAAEALSAAAGSA 125 (361)
T ss_pred HHHHHHHhcCCCcEEEecHHHHHHHHHcCCCeEEEeCCCCHHHHHHHHHHHhh-CCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 344455554 468999999988 4543 37788888865555554432 23356899999999999999999998
Q ss_pred CCCCceEEEEEeCCCCCCccCCChh-hHHHHHHHHHhcCCCeeEEEEEeeCCCCC--C------ChHHHHHHHHHHHHHH
Q 029062 79 GRKPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVRLRCPNLEFSGLMTIGMPDY--T------STPENFRTLLNCRAEV 149 (199)
Q Consensus 79 g~~~i~VllqIntg~e~~R~Gv~~~-~~~~l~~~i~~~~~~L~l~GLmt~~~~~~--~------~~~~~f~~l~~~~~~l 149 (199)
|+ +++|+|+||+| ++|+|+.++ ++.++++.+. ++|+|++.|||+|.++.+ + ...++++.+.++.+.+
T Consensus 126 ~~-~~~V~l~Vd~G--~~R~Gv~~~~~~~~l~~~i~-~~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l 201 (361)
T cd06821 126 GL-TLSVLLDVNTG--MNRTGIAPGEDAEELYRAIA-TLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREAL 201 (361)
T ss_pred CC-eEEEEEEeCCC--CCcCCCCChHHHHHHHHHHh-hCCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 99999999999 899999986 7999999998 899999999999998832 1 2457888999999999
Q ss_pred HHHhCCCCCCCEEEecCCcCHHHHHHcCCCEEecCccccCCCccc
Q 029062 150 CKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 150 ~~~~g~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
++. |+. +..+|+|+|+++..+.+.+.||||||+|+|||.+|.
T Consensus 202 ~~~-g~~--~~~v~~GgS~~~~~~~~~~~~~vr~G~~l~gd~~~~ 243 (361)
T cd06821 202 EAA-GLP--VPELVAGGTPSFPFHAAYTDVECSPGTFVLWDAGYG 243 (361)
T ss_pred HHC-CCC--CCEEEECCCcchhhhccCCCcEECCceEEEecHHHh
Confidence 876 765 578999999999988778899999999999999873
No 9
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.94 E-value=1.9e-25 Score=196.61 Aligned_cols=176 Identities=17% Similarity=0.209 Sum_probs=142.8
Q ss_pred HHHHHHhc-----cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCC
Q 029062 8 LVKITYKK-----SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKP 82 (199)
Q Consensus 8 ~~~~~~~~-----~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~ 82 (199)
..+..+++ +.++++||...+..+...+|+++|..+.++++.+++ ..++..++|.+.++.+++.+.+.|+ +
T Consensus 42 va~~l~~~G~~~f~va~i~EA~~lr~~G~~~~illlg~~~~~~~~~~~~----~~~~~~i~s~~~~~~l~~~a~~~~~-~ 116 (353)
T cd06815 42 IAEALLEGGITHLADSRIENLKKLKDLGISGPKMLLRIPMLSEVEDVVK----YADISLNSELETIKALSEEAKKQGK-I 116 (353)
T ss_pred HHHHHHHcCCCEEEeccHHHHHHHHhcCCCCCEEEECCCCHHHHHHHHh----hcceeccChHHHHHHHHHHHHHcCC-c
Confidence 33445554 789999998766444345899999999999999885 3556779999999999999988887 8
Q ss_pred ceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhCCCCCCC
Q 029062 83 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQC 160 (199)
Q Consensus 83 i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g~~~~~~ 160 (199)
++|||+|||| |+|+|+.|+++.++++.+. .+++|+++|||||++..++ ....+++.+.++.+.+++..|+. +.
T Consensus 117 ~~vhlkvDtG--m~R~G~~~~e~~~~~~~i~-~~~~l~~~Gi~tH~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~ 191 (353)
T cd06815 117 HKIILMVDLG--DLREGVLPEDLLDFVEEIL-KLPGIELVGIGTNLGCYGGVLPTEENMGKLVELKEEIEKEFGIK--LP 191 (353)
T ss_pred cceEEEEecC--CCccccCHHHHHHHHHHHh-CCCCcEEEecccCccccCCCCCCHHHHHHHHHHHHHHHHhhCCC--CC
Confidence 9999999999 8999999988999999998 8999999999999997443 34567788888888887622654 36
Q ss_pred EEEecCCcCHHHHHH----cCCCEEecCcccc-CCCcc
Q 029062 161 ELSMGMSGDFEQAIE----MGSTSVRIGSTIF-GPREY 193 (199)
Q Consensus 161 ~lS~Gms~d~~~a~~----~g~t~VR~Gs~if-gd~~~ 193 (199)
.+|+|+|+++..+.+ .++||||||++|| |..|+
T Consensus 192 ~~~~~~S~~~~~~~~~~~~~~~~~vRpG~~l~yG~~p~ 229 (353)
T cd06815 192 IISGGNSASLPLLLKGELPGGINQLRIGEAILLGRETT 229 (353)
T ss_pred EEeccchHHHHHHHhcCCcCCCceeEeehhhhcccccc
Confidence 889999999886643 2799999999996 65553
No 10
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.94 E-value=9e-26 Score=198.14 Aligned_cols=169 Identities=21% Similarity=0.361 Sum_probs=146.0
Q ss_pred cCCcHHHHHHhh--cCCC-CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 16 SLIKLLRFIDKY--NLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~-~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
..++++||...+ ++++ .+.||++|+.+.+++..++ ...+++++|||++.++.|++++.+.|+ +++|+|+||+|
T Consensus 56 ~vas~~Ea~~~~~~G~~~i~i~~~~~~~~~~~~l~~l~---~~~~~~~~vds~~~l~~L~~~a~~~~~-~~~V~l~vd~G 131 (353)
T cd06820 56 TVATVGEAEVMADAGLSDIFIAYPIVGRQKLERLRALA---ERVTLSVGVDSAEVARGLAEVAEGAGR-PLEVLVEVDSG 131 (353)
T ss_pred EEeeHHHHHHHHHCCCCeEEEECCcCCHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEECCC
Confidence 567899998887 4543 5789989998878888777 346899999999999999999999997 99999999999
Q ss_pred CCCCccCCCh-hhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC------ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEec
Q 029062 93 GEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT------STPENFRTLLNCRAEVCKALGMAEDQCELSMG 165 (199)
Q Consensus 93 ~e~~R~Gv~~-~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~------~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~G 165 (199)
++|+|+.+ +++.++++.+. ++|+|++.|||+|.++.++ ...++++.+.++++.+++. |+. +..+|+|
T Consensus 132 --~~R~Gv~~~~~~~~l~~~i~-~~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~vs~G 205 (353)
T cd06820 132 --MNRCGVQTPEDAVALARAIA-SAPGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEEA-GLE--PPVVSGG 205 (353)
T ss_pred --CCcCCCCChHHHHHHHHHHH-hCCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeC
Confidence 79999998 89999999998 8999999999999998542 2456788899999999875 775 5899999
Q ss_pred CCcCHHHHH-HcCCCEEecCccccCCCccc
Q 029062 166 MSGDFEQAI-EMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 166 ms~d~~~a~-~~g~t~VR~Gs~ifgd~~~~ 194 (199)
+|+++..+. ..|+|+||||+|+|+|+.|.
T Consensus 206 gs~t~~~~~~~~~~~elR~G~~i~~d~~~~ 235 (353)
T cd06820 206 STPTLWRSHEVPGITEIRPGTYIFNDASQV 235 (353)
T ss_pred cChhhhhhhccCCceEEccccEEeecHHHH
Confidence 999998774 57999999999999998774
No 11
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.92 E-value=7e-24 Score=187.04 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=144.7
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
+.++++|+..++....+.+|+++|+.+.++++.+++ ..++++|||++.++.|++.+.+.++ +++|+|+|||| +
T Consensus 57 ~vas~~Ea~~~~~~g~~~~i~~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~v~l~vdtG--~ 129 (367)
T cd00430 57 AVATLEEALELREAGITAPILVLGGTPPEEAEEAIE----YDLTPTVSSLEQAEALSAAAARLGK-TLKVHLKIDTG--M 129 (367)
T ss_pred EECcHHHHHHHHhcCCCCCEEEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEcCC--C
Confidence 678999999998332235899999999999999985 3679999999999999999988887 89999999999 7
Q ss_pred CccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC----ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH
Q 029062 96 SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE 171 (199)
Q Consensus 96 ~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~----~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~ 171 (199)
+|+|++++++.++++.+. .+++|++.|||+|.+...+ ...++++.|.++.+.+++. |++ +..+|+|+|+...
T Consensus 130 ~R~G~~~~e~~~~~~~i~-~~~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~-g~~--~~~v~~g~s~~~~ 205 (367)
T cd00430 130 GRLGFRPEEAEELLEALK-ALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEA-GIP--PPLKHLANSAAIL 205 (367)
T ss_pred CCCCCCHHHHHHHHHHHH-hCCCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhc-CCC--CCcEEccCCHHHh
Confidence 999999999999999998 8999999999999987432 3467889999999999875 765 4688999998877
Q ss_pred HHHHcCCCEEecCccccCCCccc
Q 029062 172 QAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 172 ~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
...+.++|+||||+++||+.++.
T Consensus 206 ~~~~~~~d~vR~G~~lyG~~~~~ 228 (367)
T cd00430 206 RFPEAHFDMVRPGIALYGLYPSP 228 (367)
T ss_pred CCccccCCeEeeCeEEECcCCCc
Confidence 55567899999999999998764
No 12
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=99.92 E-value=8.4e-24 Score=186.84 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=147.7
Q ss_pred HHHHHHhc-----cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCC
Q 029062 8 LVKITYKK-----SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKP 82 (199)
Q Consensus 8 ~~~~~~~~-----~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~ 82 (199)
.++..++. +.++++|+...+....+.+|+++|+.+...+..+++ .+++++|||++.++.|++.+.+.|+ +
T Consensus 45 i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~ilvl~~~~~~~~~~~~~----~~l~~~v~s~~~l~~l~~~a~~~~~-~ 119 (367)
T TIGR00492 45 VAKTLLQAGADYFGVANLEEAITLRKAGITAPILLLGGFFAEDLKILAA----WDLTTTVHSVEQLQALEEALLKEPK-R 119 (367)
T ss_pred HHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCEEEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-c
Confidence 34445554 578999999988433345789999988777887774 5789999999999999999988887 8
Q ss_pred ceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCee-EEEEEeeCCCCCC----ChHHHHHHHHHHHHHHHHHhCCCC
Q 029062 83 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE-FSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAE 157 (199)
Q Consensus 83 i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~-l~GLmt~~~~~~~----~~~~~f~~l~~~~~~l~~~~g~~~ 157 (199)
++|||+|||| |+|+|++++++.++++.+. .+|+|+ +.|||||++..++ ...++++.|.++.+.+++. |++
T Consensus 120 ~~V~l~VdtG--m~R~Gi~~~e~~~~~~~i~-~~~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~-g~~- 194 (367)
T TIGR00492 120 LKVHLKIDTG--MNRLGVKPDEAALFVQKLR-QLKKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQ-NIE- 194 (367)
T ss_pred eEEEEEeeCC--CCCCCCChHHHHHHHHHHH-hCCCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhc-CCC-
Confidence 9999999999 7999999988888998898 899999 9999999987532 3578999999999999875 765
Q ss_pred CCCEEEecCCcCHHHHHHcCCCEEecCccccCCCccc
Q 029062 158 DQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 158 ~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
+..+|+|+|++...+.+.++|+||||+++||..++.
T Consensus 195 -~~~~~~~nS~~~~~~~~~~~d~vR~G~~lyG~~~~~ 230 (367)
T TIGR00492 195 -PPFRHIANSAAILNWPESHFDMVRPGIILYGLYPSA 230 (367)
T ss_pred -CCcEEccCCHHHhCCccccCCeEccCeEEECCCcCc
Confidence 467899999998876678999999999999988753
No 13
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.92 E-value=6.7e-24 Score=189.19 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=135.0
Q ss_pred CcHHHHHHhh--cCCCCceeeeec-ccchHHHHhHhccCCCcc-EEEecCcHHHHHHHHHH-HHhcCCCCceEEEEEeCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVG-HLQSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKA-VSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG-~lq~~ki~~l~~~~~~~~-~i~sVDs~~~a~~l~~~-a~~~g~~~i~VllqIntg 92 (199)
.++.||+..+ ++...|+.-++| ++...++++++++.+.++ +.+.|||.+.++.|++. +...|. +++|||+||||
T Consensus 63 atl~EA~~lr~~G~~~~I~dilla~~~~~~~~~~l~~l~~~~~~i~~~Vds~~~l~~l~~~~a~~~g~-~~~V~lkvDtG 141 (389)
T cd06817 63 STLAEAEFLLPLGEEGRVDDILYGLPVPPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGK-KWSVFIKVDCG 141 (389)
T ss_pred ecHHHHHHHHHhccccccccEEEECCCCHHHHHHHHHHHhhcCceEEEECCHHHHHHHHHHHhhccCC-ceEEEEEEcCC
Confidence 5689999988 443233334556 556688888875422234 99999999999999998 877887 99999999999
Q ss_pred CCCCccCCCh--hhHHHHHHHHHhc-CCCeeEEEEEeeCCCCCCC---------hHHHHHHHHHHHHHHHH-HhCCCCCC
Q 029062 93 GEESKSGIDP--SSCLGIVEHVRLR-CPNLEFSGLMTIGMPDYTS---------TPENFRTLLNCRAEVCK-ALGMAEDQ 159 (199)
Q Consensus 93 ~e~~R~Gv~~--~~~~~l~~~i~~~-~~~L~l~GLmt~~~~~~~~---------~~~~f~~l~~~~~~l~~-~~g~~~~~ 159 (199)
|+|+|+.+ +++.++++.|. . +++|++.|+|||+++++.. .++.++.+..+.+.|++ . |++ +
T Consensus 142 --m~R~Gv~~~~~~~~~l~~~i~-~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~-g~~--~ 215 (389)
T cd06817 142 --THRAGVPPESEDAKELIQKLE-KASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQ-GDR--K 215 (389)
T ss_pred --CCcCCCCCChHHHHHHHHHHH-hhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--C
Confidence 89999986 35889999998 8 9999999999999986531 23456777778888875 5 876 5
Q ss_pred CEEEecCCcCHHHHH---------HcCCCEEecCccccCCCccc
Q 029062 160 CELSMGMSGDFEQAI---------EMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 160 ~~lS~Gms~d~~~a~---------~~g~t~VR~Gs~ifgd~~~~ 194 (199)
+.+|+|+||++..+. ..+.|++|||+|+|+|..|.
T Consensus 216 ~~vs~GgTpt~~~~~~~~~~~~~~~~~~tel~pG~Yvf~D~~~~ 259 (389)
T cd06817 216 LTLSVGATPTAHAAEALVLIPAPSLSGLLELHAGNYPFYDLQQV 259 (389)
T ss_pred CEEEeCCCcchhhhccccccccccCCcceEEccCccccccHHHH
Confidence 899999999988643 25789999999999999885
No 14
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.92 E-value=1.3e-23 Score=184.02 Aligned_cols=168 Identities=17% Similarity=0.226 Sum_probs=129.3
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccc-hHHHHhHhccCC-CccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQ-SNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT 91 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq-~~ki~~l~~~~~-~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqInt 91 (199)
+.++++||+..+ ++ . ...+.++++ .++++.+.+... ..++..+|||.+.++.|++.+.+.|+ +++|||+|||
T Consensus 45 ~vat~~Ea~~l~~~G~-~--~Ili~~~~~~~~~~~~~~~l~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~ID~ 120 (345)
T cd07376 45 TVATLAEAETFAEAGV-K--DILMAYPLVGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGV-RLRVMLEVDV 120 (345)
T ss_pred EEecHHHHHHHHHcCC-C--eEEEECCcCCHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEeCC
Confidence 678899999988 34 2 334446776 677777764322 25688999999999999999998887 9999999999
Q ss_pred CCCCCccCCChhhHHHHHH--HHHhcCCCeeEEEEEeeCCCCCCC---------hHHHHHHHHHHHHHHHHHhCCCCCCC
Q 029062 92 SGEESKSGIDPSSCLGIVE--HVRLRCPNLEFSGLMTIGMPDYTS---------TPENFRTLLNCRAEVCKALGMAEDQC 160 (199)
Q Consensus 92 g~e~~R~Gv~~~~~~~l~~--~i~~~~~~L~l~GLmt~~~~~~~~---------~~~~f~~l~~~~~~l~~~~g~~~~~~ 160 (199)
| ++|+|++|++...+.. .+. ++++|++.|||||+++.++. ..++++.+.++.+.++ . |++ +.
T Consensus 121 G--~~R~Gv~~~~~~~l~~~~~i~-~~~~l~l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-g~~--~~ 193 (345)
T cd07376 121 G--GHRSGVRPEEAAALALADAVQ-ASPGLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE-R-GLA--CP 193 (345)
T ss_pred C--CCcCCCCCcHHHHHHHHHHhc-cCCCeEEeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH-c-CCC--CC
Confidence 9 8999999855444443 344 68999999999999974321 2355566666666665 3 665 47
Q ss_pred EEEecCCcCHHHHH-HcCCCEEecCccccCCCccc
Q 029062 161 ELSMGMSGDFEQAI-EMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 161 ~lS~Gms~d~~~a~-~~g~t~VR~Gs~ifgd~~~~ 194 (199)
.+|+|+|+++..+. ..++||||||+++|||++|.
T Consensus 194 ~vs~G~S~~~~~~~~~~~~~~vR~G~~lyg~~~~~ 228 (345)
T cd07376 194 TVSGGGTPTYQLTAGDRAVTELRAGSYVFMDTGFD 228 (345)
T ss_pred EEEeCCCcChhhcccCCCCEEEcCceEEecchHHh
Confidence 89999999998775 67899999999999999884
No 15
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.90 E-value=9.9e-23 Score=179.08 Aligned_cols=169 Identities=20% Similarity=0.245 Sum_probs=137.8
Q ss_pred cCCcHHHHHHhh--cCCC-CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 16 SLIKLLRFIDKY--NLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~-~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
.-++++|+...+ ++++ .+.++++|+...+++..++ ...++.++|||++.++.|++.+.+.++ +++|+|+||+|
T Consensus 60 ~vas~~Ea~~~~~~G~~~ili~~~~~~~~~~~~~~~~~---~~~~i~~~vDs~~~l~~l~~~a~~~~~-~~~V~l~vd~G 135 (358)
T cd06819 60 CCQKLSEAEVMAAAGIRDILITNEVVGPAKIARLAALA---RRAPLIVCVDHPDNVRALAAAAVEAGV-RLDVLVEIDVG 135 (358)
T ss_pred EEccHHHHHHHHHCCCCeEEEECCcCCHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC
Confidence 456899998877 5543 4566677875555544454 346789999999999999999999997 99999999999
Q ss_pred CCCCccCCC-hhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---------ChHHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 029062 93 GEESKSGID-PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---------STPENFRTLLNCRAEVCKALGMAEDQCEL 162 (199)
Q Consensus 93 ~e~~R~Gv~-~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---------~~~~~f~~l~~~~~~l~~~~g~~~~~~~l 162 (199)
++|+|+. ++++.++++.+. ++|+|++.|||+|.++... ...++++.+.++.+.+++. |+. +..+
T Consensus 136 --~~R~Gv~~~~~~~~l~~~i~-~~~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~v 209 (358)
T cd06819 136 --QGRCGVPPGEAALALARTIA-ALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAA-GLP--CEIV 209 (358)
T ss_pred --CCcCCCCChHHHHHHHHHHH-hCCCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCC--CCEE
Confidence 7999998 578999999998 8999999999999987321 1356788888888888865 775 5788
Q ss_pred EecCCcCHHHHHH-cCCCEEecCccccCCCccc
Q 029062 163 SMGMSGDFEQAIE-MGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 163 S~Gms~d~~~a~~-~g~t~VR~Gs~ifgd~~~~ 194 (199)
|+|+|+++..+.. .++|++|+|+|+|+|+.|.
T Consensus 210 sgGgs~~~~~~~~~~~~~elr~G~~i~~d~~~~ 242 (358)
T cd06819 210 TGGGTGTYEFEAASGVYTELQAGSYVFMDADYG 242 (358)
T ss_pred ecCCCcChhhhccCCcceEEccCceEEecHHHH
Confidence 9999999987765 5589999999999998773
No 16
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.90 E-value=7.6e-23 Score=181.90 Aligned_cols=167 Identities=15% Similarity=0.199 Sum_probs=128.1
Q ss_pred CCcHHHHHHhh-cCC-CCceeeeec-ccchHHHHhHhc-cC-----CCccEEEecCcHHHHHHHHHHHHhcCCCCceEEE
Q 029062 17 LIKLLRFIDKY-NLP-EDIKWHFVG-HLQSNKAKTLLG-GV-----PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLV 87 (199)
Q Consensus 17 ~n~~qE~~~k~-~~~-~~i~~h~IG-~lq~~ki~~l~~-~~-----~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~Vll 87 (199)
=+.+.||+..+ ... .+| ++| ++...++.++++ +. ...++.++|||.+.++.+++.+.+.+. +++|||
T Consensus 63 vat~~Eae~l~~~~~~~dI---Ll~~p~~~~~~~r~~~~l~~~~~~~~~~l~~~Vds~e~l~~l~~~a~~~g~-~l~V~l 138 (379)
T cd06814 63 VFHQPFLNAVAKAFPDADI---LLGKPMPVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGL-TLRINL 138 (379)
T ss_pred EecHHHHHHHHhcCCCcCe---EEeCCCCcHHHHHHHhhccccccchhcCEEEEECCHHHHHHHHHHHHHcCC-ceEEEE
Confidence 34588888876 322 233 255 444456655533 11 135799999999999999999988887 999999
Q ss_pred EEeCCCCCCccCCChh-hHHHHHHHHHhcCCCeeEEEEEeeCCCCC---C-----C----hHHHHHHHHHHHHHHHHHhC
Q 029062 88 QVNTSGEESKSGIDPS-SCLGIVEHVRLRCPNLEFSGLMTIGMPDY---T-----S----TPENFRTLLNCRAEVCKALG 154 (199)
Q Consensus 88 qIntg~e~~R~Gv~~~-~~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~-----~----~~~~f~~l~~~~~~l~~~~g 154 (199)
+|||| |+|+|+.++ ++.++++.+. .+++|++.|||+|.+|.+ + + ..+.++.+.++.+.++.. |
T Consensus 139 kVDtG--m~R~Gv~~~~~~~~l~~~i~-~~~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 214 (379)
T cd06814 139 ELDVG--LHRGGFADPQTLPKALTAID-APPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLGA-H 214 (379)
T ss_pred EeCCC--CCCCCCCCHHHHHHHHHHHH-hCCCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhcc-C
Confidence 99999 899999875 6999999998 899999999999999832 1 1 123445566666666554 7
Q ss_pred CCCCCCEEEecCCcCHHHHHH-cCCCEEecCccccCCCcc
Q 029062 155 MAEDQCELSMGMSGDFEQAIE-MGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 155 ~~~~~~~lS~Gms~d~~~a~~-~g~t~VR~Gs~ifgd~~~ 193 (199)
++ ++.+|.|+||||+.+.. .+.||||||||+|+|+.|
T Consensus 215 ~~--~~~vs~GgTpT~~~~~~~~~~tE~~pGsy~f~D~~~ 252 (379)
T cd06814 215 TQ--KLTLNTGGSPTYRLYEGDGPVNEVSAGSALVKPTDF 252 (379)
T ss_pred CC--ccEEecCCCcceEEEcCCCcceEeccccEEEccccc
Confidence 76 68999999999986654 678999999999999999
No 17
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.89 E-value=1.5e-22 Score=179.97 Aligned_cols=173 Identities=15% Similarity=0.250 Sum_probs=136.4
Q ss_pred cCCcHHHHHHhh--cCCC-CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 16 SLIKLLRFIDKY--NLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~-~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
.-.++.|++..+ ++++ -+.++.+|+-...++..+++.++..++...|||.++++.|++.+.+.|+ +++|+|+||+|
T Consensus 56 ~vas~~Ea~~l~~~G~~~il~~~~~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~-~~~v~i~vn~g 134 (382)
T cd06818 56 TVATVAQARVALAFGVRRVLLANQLVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALER-PLNVLIELGVP 134 (382)
T ss_pred EEeEHHHHHHHHHcCCCeEEEecCcCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC
Confidence 346789998877 4442 1233456776666677777533356788999999999999999999997 99999999997
Q ss_pred CCCCccCCCh-hhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--------ChHHHHHHHHHHHHHHHHHhCC-CCCCCEE
Q 029062 93 GEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--------STPENFRTLLNCRAEVCKALGM-AEDQCEL 162 (199)
Q Consensus 93 ~e~~R~Gv~~-~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--------~~~~~f~~l~~~~~~l~~~~g~-~~~~~~l 162 (199)
++|+|+.+ +++.++++.+. .+|+|++.|||+|.++.+. ...+.|+.+.++++.|+++ +. ..++..+
T Consensus 135 --~~R~G~~~~~~~~~l~~~i~-~~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~il 210 (382)
T cd06818 135 --GGRTGVRTEAEALALADAIA-ASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAER-GLFPDRELIL 210 (382)
T ss_pred --CCCCCCCCHHHHHHHHHHHH-cCCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEE
Confidence 89999974 77899999998 8999999999999887521 2356788999999999876 43 2235789
Q ss_pred EecCCcCHHHHHHc--C-------CCEEecCccccCCCcc
Q 029062 163 SMGMSGDFEQAIEM--G-------STSVRIGSTIFGPREY 193 (199)
Q Consensus 163 S~Gms~d~~~a~~~--g-------~t~VR~Gs~ifgd~~~ 193 (199)
|||||++++.+.+. + .+++|||+|+|+|..|
T Consensus 211 SgGgT~~~~~~~~~~~~~~~~~~~~~el~pG~y~~~D~g~ 250 (382)
T cd06818 211 TAGGSAWFDLVAEALAALALDGPVTLVLRSGCYVTHDHGI 250 (382)
T ss_pred EecCCHhHHHHHHhhcccccCCceeEEEecCeeEEecHHH
Confidence 99999999976532 2 5899999999999754
No 18
>PRK00053 alr alanine racemase; Reviewed
Probab=99.88 E-value=9.8e-22 Score=173.51 Aligned_cols=162 Identities=17% Similarity=0.279 Sum_probs=130.8
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecc-cchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGH-LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~-lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
+.++++|+..++ +++.+ ..+.|+ ....++..+++ .+++++|||.+.++.|+++ +.++ +++|||+||||
T Consensus 59 ~vas~~Ea~~l~~~G~~~~--il~l~~~~~~~e~~~~~~----~~i~~~v~s~~~l~~l~~~--~~~~-~~~V~l~vdtG 129 (363)
T PRK00053 59 GVATLEEALELREAGITAP--ILILGGFFPAEDLPLIIA----YNLTTAVHSLEQLEALEKA--ELGK-PLKVHLKIDTG 129 (363)
T ss_pred EECcHHHHHHHHhcCCCCC--EEEEeCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHh--ccCC-CeEEEEEecCC
Confidence 688999999998 34433 344554 34567887774 5789999999999999995 5676 89999999999
Q ss_pred CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC----ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc
Q 029062 93 GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 168 (199)
Q Consensus 93 ~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~----~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~ 168 (199)
++|+|+.|+++.++++.+. .+|+|++.|||||++..++ ...+++++|.++.+.+++. |+ +.+|+|.|+
T Consensus 130 --~~R~Gi~~~e~~~~~~~i~-~~~~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~-g~----~~~h~~nS~ 201 (363)
T PRK00053 130 --MHRLGVRPEEAEAALERLL-ACPNVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPGK-GK----PLRHLANSA 201 (363)
T ss_pred --CCcCCCCHHHHHHHHHHHH-hCCCCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhc-CC----ceEeccCCH
Confidence 8999999999999999998 8999999999999998542 2467888999999888764 65 256777777
Q ss_pred CHHHHHHcCCCEEecCccccCCCccc
Q 029062 169 DFEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 169 d~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
......+.++|+||||+++||+.|+.
T Consensus 202 ~~~~~~~~~~d~vRpG~~lyG~~p~~ 227 (363)
T PRK00053 202 AILRWPDLHFDWVRPGIALYGLSPSG 227 (363)
T ss_pred HHhCCCcccCceEccCeeeeCCCCCc
Confidence 66544456889999999999998864
No 19
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.87 E-value=6.8e-21 Score=169.54 Aligned_cols=175 Identities=19% Similarity=0.237 Sum_probs=135.3
Q ss_pred HHHHHHhccC-----CcHHHHHHhhcCCCCceeeeecccc---hHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcC
Q 029062 8 LVKITYKKSL-----IKLLRFIDKYNLPEDIKWHFVGHLQ---SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG 79 (199)
Q Consensus 8 ~~~~~~~~~~-----n~~qE~~~k~~~~~~i~~h~IG~lq---~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g 79 (199)
..+...+.|- .++.|+...+.. .++|+.||+++ .++++.+++. ...+++|||++.+++|++++.+.|
T Consensus 69 ia~~l~~~G~~g~~vas~~Ea~~lr~a--Gi~~~~I~~l~~~~~~el~~~v~~---~~~~i~V~s~~~l~~L~~~A~~~g 143 (382)
T cd06811 69 LARALLEAGIPGAVAVDFKEARALHEA--GLPLGHVGHLVQIPRHQVPAVLAM---RPEVITVYSLEKAREISDAAVELG 143 (382)
T ss_pred HHHHHHHcCCCeEeEecHHHHHHHHHc--CCCHHhEEEccCCCHHHHHHHHHc---CCCEEEECCHHHHHHHHHHHHHcC
Confidence 4445555543 378888877632 34565666444 6889888852 224799999999999999999999
Q ss_pred CCCceEEEEEeCCCCCCcc------CCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC--CCCC----hHHHHHHHHHHHH
Q 029062 80 RKPLKVLVQVNTSGEESKS------GIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTS----TPENFRTLLNCRA 147 (199)
Q Consensus 80 ~~~i~VllqIntg~e~~R~------Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~--~~~~----~~~~f~~l~~~~~ 147 (199)
+ +++|||+||+| ++|. |++++++.++++.+. ++++|++.||++|+++ +... ..++++.+.++++
T Consensus 144 ~-~~~V~LrVdtg--~~ri~~g~~~G~~~~e~~~~~~~i~-~l~~l~l~Githf~~~~~d~~~~~~~~~~~~~~l~~~~~ 219 (382)
T cd06811 144 R-VQDVLLRVYGD--EDTLYPGQEGGFPLEELPAVLAAIK-ALPGIRIAGLTSFPCFLYDEEQGDIAPTPNLFTLLKAKE 219 (382)
T ss_pred C-ceEEEEEEECC--CCccccCccceecHHHHHHHHHHHH-cCCCcEEEeEcccchhhcccCcccccHHHHHHHHHHHHH
Confidence 7 99999999998 5664 999999999999998 8999999999766554 2221 3457888999999
Q ss_pred HHHHHhCCCCCCCEEEecCCcCH---HHHHHcCCCEEecCccccCCCccc
Q 029062 148 EVCKALGMAEDQCELSMGMSGDF---EQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 148 ~l~~~~g~~~~~~~lS~Gms~d~---~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
.+++. |+. +.++|+|++++. +.+.+.|+||||||+++||+.|+.
T Consensus 220 ~l~~~-g~~--~~~is~Gga~ss~~l~~~~~~~~t~vRpG~~LyG~~p~~ 266 (382)
T cd06811 220 LLEKR-GIE--ILQLNAPSATSCATLPLLAEYGVTHGEPGHALTGTTPLH 266 (382)
T ss_pred HHHHC-CCC--CeEEccCCCcchhhHHHHHhCCCcEEeccEEEecCcchh
Confidence 99876 765 578888765554 666688999999999999999874
No 20
>PRK13340 alanine racemase; Reviewed
Probab=99.86 E-value=9.3e-21 Score=169.82 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=127.4
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeC-C
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-S 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqInt-g 92 (199)
+-.++.||...+ +++.. -.. .+......+..+++ .++.++|||.+.++.|++.+.+.++ +++|||+||| |
T Consensus 96 ~Vas~~Ea~~lr~~G~~~~-ilv-l~~~~~~el~~~~~----~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~LkVDt~G 168 (406)
T PRK13340 96 GIASNEEARRVRELGFTGQ-LLR-VRSASPAEIEQALR----YDLEELIGDDEQAKLLAAIAKKNGK-PIDIHLALNSGG 168 (406)
T ss_pred EEccHHHHHHHHhCCCCCC-EEE-ECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC
Confidence 456789998887 45432 222 34446677887774 4678999999999999999988887 8999999999 6
Q ss_pred CCCCccCCChhhH--HHHHHHHHhcCCCeeEEEEEeeCCCCCC-ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC
Q 029062 93 GEESKSGIDPSSC--LGIVEHVRLRCPNLEFSGLMTIGMPDYT-STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 169 (199)
Q Consensus 93 ~e~~R~Gv~~~~~--~~l~~~i~~~~~~L~l~GLmt~~~~~~~-~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d 169 (199)
|+|+|+.+++. ...+..+. .+++|++.|||||++.+++ +...++++|.++.+.+.+..|+. +..+|+||++|
T Consensus 169 --m~R~G~~~~e~~~~~~~~~l~-~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~l~~~~g~~--~~~~~~h~anS 243 (406)
T PRK13340 169 --MSRNGLDMSTARGKWEALRIA-TLPSLGIVGIMTHFPNEDEDEVRWKLAQFKEQTAWLIGEAGLK--REKITLHVANS 243 (406)
T ss_pred --CCCcCCChhhhhHHHHHHHHH-hCCCccEEEEEEECCCCCcHHHHHHHHHHHHHHHHHHHhcCCC--CCcCeEEecCC
Confidence 89999998654 33344777 7899999999999997433 45678889988888875544654 35578899999
Q ss_pred HHHH--HHcCCCEEecCccccCCC
Q 029062 170 FEQA--IEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 170 ~~~a--~~~g~t~VR~Gs~ifgd~ 191 (199)
+.+. .+.++|+||||+++||++
T Consensus 244 a~~~~~~~~~~d~vR~G~~lyG~~ 267 (406)
T PRK13340 244 YATLNVPEAHLDMVRPGGILYGDR 267 (406)
T ss_pred HHHHcCchhcCCeEeeCeeeeCCC
Confidence 8864 367899999999999993
No 21
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.86 E-value=2e-20 Score=152.01 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=135.2
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccc-hHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQ-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq-~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
.-++.+|+.... +++ ..++++.|+.+ .++++.+++ ....+++|||.+.+..|.+.+++.+. +++|+|+||+|
T Consensus 42 ~v~s~~E~~~~~~~g~~-~~~I~~~~~~~~~~~l~~~~~---~~~~~~~ids~~~l~~l~~~~~~~~~-~~~v~lrv~~g 116 (211)
T cd06808 42 DVASLGEALLLRAAGIP-PEPILFLGPCKQVSELEDAAE---QGVIVVTVDSLEELEKLEEAALKAGP-PARVLLRIDTG 116 (211)
T ss_pred EEcCHHHHHHHHHcCCC-HHHEEEcCCCCCHHHHHHHHH---cCCCEEEeCCHHHHHHHHHHHHHhCC-CceEEEEEcCC
Confidence 567899999887 442 35799999998 677888874 23577899999999999999988887 89999999998
Q ss_pred CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC
Q 029062 93 GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 169 (199)
Q Consensus 93 ~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d 169 (199)
..++|+|++++++.++++.+. +.+++++.|||+|.+.... ...++++.+.++.+.+++. |.. +..+|+|+|..
T Consensus 117 ~~~~R~G~~~~e~~~~~~~i~-~~~~l~l~Gl~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~i~~Ggg~~ 192 (211)
T cd06808 117 DENGKFGVRPEELKALLERAK-ELPHLRLVGLHTHFGSADEDYSPFVEALSRFVAALDQLGEL-GID--LEQLSIGGSFA 192 (211)
T ss_pred CCCCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEECCCCC
Confidence 667999999999999999998 8999999999999987543 3467788888988888774 765 47889999988
Q ss_pred HHHH---HHcCCCEEecCc
Q 029062 170 FEQA---IEMGSTSVRIGS 185 (199)
Q Consensus 170 ~~~a---~~~g~t~VR~Gs 185 (199)
+... .+.+.|+||||+
T Consensus 193 ~~~~~~~~~~~~~~vR~G~ 211 (211)
T cd06808 193 ILYLQELPLGTFIIVEPGR 211 (211)
T ss_pred cCcCCCCCCCceEEeCCCC
Confidence 7766 567899999996
No 22
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.83 E-value=1.6e-19 Score=159.72 Aligned_cols=168 Identities=16% Similarity=0.137 Sum_probs=126.0
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeC-C
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-S 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqInt-g 92 (199)
+-+++.||...+ +++.. .-+.|.....+++.+++ .++.++|+|+++++.|++.+.+.++ +++|||+||| |
T Consensus 57 ~Vas~~Ea~~lr~~Gi~~~--ilvl~~~~~~e~~~~i~----~~i~~~v~s~~~l~~l~~~a~~~~~-~~~v~LkvDt~G 129 (365)
T cd06826 57 GITSNEEARVVREAGFTGK--ILRVRTATPSEIEDALA----YNIEELIGSLDQAEQIDSLAKRHGK-TLPVHLALNSGG 129 (365)
T ss_pred EEccHHHHHHHHhcCCCCC--EEEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC
Confidence 567889999888 44432 33446666678888885 5788999999999999999988887 9999999999 8
Q ss_pred CCCCccCCChh--hHHHHHHHHHhcCCCeeEEEEEeeCCCCCC-ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC
Q 029062 93 GEESKSGIDPS--SCLGIVEHVRLRCPNLEFSGLMTIGMPDYT-STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 169 (199)
Q Consensus 93 ~e~~R~Gv~~~--~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~-~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d 169 (199)
|+|+|+.|+ ++.+++..+. .+++|++.|||||++..++ ....|+++|.++.+.+.+..|+.++...+|.+-|..
T Consensus 130 --m~R~Gi~~~~~~~~~~~~~~~-~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~ 206 (365)
T cd06826 130 --MSRNGLELSTAQGKEDAVAIA-TLPNLKIVGIMTHFPVEDEDDVRAKLARFNEDTAWLISNAKLKREKITLHAANSFA 206 (365)
T ss_pred --CCCCCCCcchhhHHHHHHHHH-HCCCCcEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHH
Confidence 899999984 3577778887 8999999999999998543 346788888887777633336543223344433322
Q ss_pred HHHHHHcCCCEEecCccccCCCcc
Q 029062 170 FEQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 170 ~~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
.....+.+.|+||||+++||+.|+
T Consensus 207 ~l~~~~~~~d~vR~G~~lyG~~p~ 230 (365)
T cd06826 207 TLNVPEAHLDMVRPGGILYGDTPP 230 (365)
T ss_pred HhcCccccCCcCccCeeeeCCCCC
Confidence 211225688999999999998875
No 23
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.83 E-value=2.3e-19 Score=158.65 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=129.2
Q ss_pred HHHHHHHhccC-----CcHHHHHHhh--cCCC-CceeeeecccchHHHHhHhccCC-CccEEEecCcHHHHHHHHHHHHh
Q 029062 7 ALVKITYKKSL-----IKLLRFIDKY--NLPE-DIKWHFVGHLQSNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSN 77 (199)
Q Consensus 7 ~~~~~~~~~~~-----n~~qE~~~k~--~~~~-~i~~h~IG~lq~~ki~~l~~~~~-~~~~i~sVDs~~~a~~l~~~a~~ 77 (199)
+.++...+.+- +++.|++..+ ++++ -+.+. +++ .++..+++... ..++.+.|||.+.++.|++.+.+
T Consensus 45 ~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~~il~~~~-~~~---~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~ 120 (374)
T cd06812 45 EVARRLLAAGASPATVSTLKEAEAFAEAGYRDILYAVG-IAP---AKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQ 120 (374)
T ss_pred HHHHHHHhCCCCcEEEccHHHHHHHHHcCCCeeEEeCC-CCH---HHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHH
Confidence 34444555543 3688888776 4432 11222 233 45554443212 24688999999999999999999
Q ss_pred cCCCCceEEEEEeCCCCCCccCCChh-h-HHHHHHHHHhcCCCeeEEEEEeeCCCCC---C--C----hHHHHHHHHHHH
Q 029062 78 LGRKPLKVLVQVNTSGEESKSGIDPS-S-CLGIVEHVRLRCPNLEFSGLMTIGMPDY---T--S----TPENFRTLLNCR 146 (199)
Q Consensus 78 ~g~~~i~VllqIntg~e~~R~Gv~~~-~-~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~--~----~~~~f~~l~~~~ 146 (199)
.|+ +++|+|+||+| ++|+|+.++ + +.++++.+. . ++|++.|||+|.++.+ + . .+++++.+.++.
T Consensus 121 ~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~~l~~~i~-~-~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~ 195 (374)
T cd06812 121 HGV-RFPVLIEIDCD--GHRGGIAPDSDALLEIARILH-D-GGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAA 195 (374)
T ss_pred cCC-ceEEEEEeCCC--CCcCCCCCCcHHHHHHHHHHh-c-CCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 997 99999999999 899999884 3 677778776 4 7999999999998632 1 1 233455688888
Q ss_pred HHHHHHhCCCCCCCEEEecCCcCHHHHHH-cCCCEEecCccccCCCccc
Q 029062 147 AEVCKALGMAEDQCELSMGMSGDFEQAIE-MGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 147 ~~l~~~~g~~~~~~~lS~Gms~d~~~a~~-~g~t~VR~Gs~ifgd~~~~ 194 (199)
+.+++. |+. +..+|+|+|+++..+.. .+.|++|||+|+|+|.+|.
T Consensus 196 ~~l~~~-g~~--~~~v~~Ggt~~~~~~~~~~~~~el~~G~y~~~D~~~~ 241 (374)
T cd06812 196 ERLRAA-GLP--CPVVSVGSTPTAHFAEDLTGVTEVRAGVYVFFDLVMA 241 (374)
T ss_pred HHHHhC-CCC--CCEEeecCChhhhhhcccCCceEeccCceeeccHHHH
Confidence 888875 876 58999999999887643 6789999999999998774
No 24
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.83 E-value=1.7e-19 Score=159.93 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=126.1
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
+-.++.||+..+..+.+.+..++|......+..+++ .+++.+|+|.+.++.|++.+ + +++|||+|||| |
T Consensus 57 aVa~~~EA~~Lr~~Gi~~~Ilvl~~~~~~~~~~~~~----~~l~~~i~~~~~l~~l~~~~----~-~~~vhlkvDtG--m 125 (368)
T cd06825 57 AVATIDEGIRLREAGIKGEILILGYTPPVRAKELKK----YSLTQTLISEAYAEELSKYA----V-NIKVHLKVDTG--M 125 (368)
T ss_pred EEccHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHhcC----C-CceEEEEeeCC--C
Confidence 667899999988332222444557655677887774 68999999999999998865 4 78999999999 9
Q ss_pred CccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC-------ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc
Q 029062 96 SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT-------STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 168 (199)
Q Consensus 96 ~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~-------~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~ 168 (199)
+|.|+.|+++ +++..+. .+|+|++.|+|||++.+++ ....|++.|.++.+.++++ |+++ ..+|+|.|+
T Consensus 126 ~R~G~~~~~~-~~~~~~~-~~~~l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~-g~~~--~~~h~~nSa 200 (368)
T cd06825 126 HRLGESPEDI-DSILAIY-RLKNLKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKAR-GIEV--GKIHIQSSY 200 (368)
T ss_pred CCCCCCHHHH-HHHHHHH-hCCCCcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhc-CCCC--CcEEeeCCH
Confidence 9999999554 6777787 7899999999999997532 1467889999999999875 7763 567887775
Q ss_pred CHHHHHHcCCCEEecCccccCCCcc
Q 029062 169 DFEQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 169 d~~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
......+.+.|+||||+++||..|.
T Consensus 201 ~~l~~~~~~~d~vR~G~~lYG~~p~ 225 (368)
T cd06825 201 GILNYPDLKYDYVRPGILLYGVLSD 225 (368)
T ss_pred HHhCCccccCCeEccCeEEECCCCC
Confidence 5433335588999999999998764
No 25
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.79 E-value=1.2e-18 Score=153.81 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=119.1
Q ss_pred cCCcHHHHHHhhcCCCCceeeee-cccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE 94 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e 94 (199)
+-.++.||...+..+.+.+..+. |.....++..+++ .++.++|+|.+.++.|++.+ .++ +++|||+||||
T Consensus 56 aVa~l~Ea~~LR~~Gi~~~Ilvl~~~~~~~~~~~~~~----~~l~~~i~s~~~l~~l~~~~--~~~-~~~vhLkvDTG-- 126 (355)
T PRK03646 56 AVLNLEEAITLRERGWKGPILMLEGFFHAQDLELYDQ----HRLTTCVHSNWQLKALQNAR--LKA-PLDIYLKVNSG-- 126 (355)
T ss_pred EEeeHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhc--cCC-CeEEEEEeeCC--
Confidence 66788999998833222234445 5545567777764 68999999999999999875 465 89999999999
Q ss_pred CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHH
Q 029062 95 ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ 172 (199)
Q Consensus 95 ~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~ 172 (199)
|+|.|+.|+++.++++.+. .+++|++.|+|||++.+++ ....|+++|.++.+ ++.. ..|++.|.....
T Consensus 127 M~R~G~~~~e~~~~~~~i~-~~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~~~~------~~~~---~~h~~nSa~~~~ 196 (355)
T PRK03646 127 MNRLGFQPERVQTVWQQLR-AMGNVGEMTLMSHFARADHPDGISEAMARIEQAAE------GLEC---ERSLSNSAATLW 196 (355)
T ss_pred CCCCCCCHHHHHHHHHHHH-hCCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh------ccCC---CeeeeCCHHHHC
Confidence 9999999999999999998 8999999999999998543 34567777766553 3331 244444444332
Q ss_pred HHHcCCCEEecCccccCCCcc
Q 029062 173 AIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 173 a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
..+.+.++||||+.+||..|+
T Consensus 197 ~~~~~~d~vR~Gi~lYG~~p~ 217 (355)
T PRK03646 197 HPQAHFDWVRPGIILYGASPS 217 (355)
T ss_pred CccccCCeeccceeeeCCCCC
Confidence 225678999999999998775
No 26
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.79 E-value=1.8e-18 Score=154.17 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=119.8
Q ss_pred cHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCC-CccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC
Q 029062 19 KLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE 94 (199)
Q Consensus 19 ~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~-~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e 94 (199)
.+.||...+ ++ .+ ..+-++. ...++..+++... ..++.+.|||.++++.|++.+.+.++ +++|+|+||+|
T Consensus 66 s~~Ea~~l~~aG~-~~--ILl~~p~~~~~~l~~~~~~~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~IDtG-- 139 (388)
T cd06813 66 TLAEALWLARQGF-DD--ILVAYPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRV-EVRVCIDIDAS-- 139 (388)
T ss_pred cHHHHHHHHHcCC-Ce--EEEeCCCCCHHHHHHHHhhhccCCeEEEEEcCHHHHHHHHHHHHhcCC-ceEEEEEECCC--
Confidence 788988877 44 22 2333343 3356777764211 13688999999999999999988887 99999999998
Q ss_pred CCccCC---------C-hhhHHHHHHHHHhcCCCeeEEEEEeeCCC---CCC--Ch------------HHHH----HHHH
Q 029062 95 ESKSGI---------D-PSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DYT--ST------------PENF----RTLL 143 (199)
Q Consensus 95 ~~R~Gv---------~-~~~~~~l~~~i~~~~~~L~l~GLmt~~~~---~~~--~~------------~~~f----~~l~ 143 (199)
|+|.|+ . ++++.++++.+. ++++|++.|||+|.++ ..+ +. ...+ +...
T Consensus 140 m~R~G~~~G~~Rs~~~~~~~~~~l~~~i~-~~~~l~l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 218 (388)
T cd06813 140 LRFGGLHFGVRRSPLHTPAQALALAKAIA-ARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRA 218 (388)
T ss_pred ccccccccCcCCCCCCCHHHHHHHHHHHh-cCCCcEEEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 677665 3 688999999998 8999999999999776 111 10 0122 2223
Q ss_pred HHHHHHHHHhCCCCCCCEEEecCCcCHHHHH-HcCCCEEecCccccCCCcc
Q 029062 144 NCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 144 ~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a~-~~g~t~VR~Gs~ifgd~~~ 193 (199)
++++.|++. |++ +..++.|+|++++... +.+.||||||+++||+.++
T Consensus 219 ~~~~~l~~~-g~~--~~~vNsgGt~s~~~~~~~~~~tevrpGs~lyg~~~~ 266 (388)
T cd06813 219 AVVAALRAE-GED--LEFVNGGGTGSLESTAADAVVTEVTAGSGLYAPALF 266 (388)
T ss_pred HHHHHHHHh-CCC--CCEEeCCCchhheeecCCCCceEeccceEEecchhh
Confidence 566667664 664 5678889999987443 4577999999999998765
No 27
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.78 E-value=5.8e-18 Score=163.41 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=130.0
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcC-CCCceEEEEEeCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVNTSGE 94 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g-~~~i~VllqIntg~e 94 (199)
+-++++||...+..+.+.+..+.|+. ...+..+++ .++.++|+|.+.++.+++.+.+.| + +++|||+||||
T Consensus 515 ~Va~l~Ea~~lr~~g~~~~Ilvl~~~-~~~~~~~~~----~~l~~~i~s~~~l~~l~~~~~~~~~~-~~~v~l~vDtG-- 586 (822)
T PRK11930 515 AVAYADEGVSLRKAGITLPIMVMNPE-PTSFDTIID----YKLEPEIYSFRLLDAFIKAAQKKGIT-GYPIHIKIDTG-- 586 (822)
T ss_pred EEeeHHHHHHHHhcCCCCCEEEEeCC-HHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCCC-ceEEEEEeeCC--
Confidence 56789999998833222345566775 567777774 689999999999999999998877 7 89999999999
Q ss_pred CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC-C----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC
Q 029062 95 ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT-S----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 169 (199)
Q Consensus 95 ~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~-~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d 169 (199)
|+|.|+.|+++.++++.+. .+|+|++.|+|||++++++ . ..+|+++|.++.+.+++..+.. ...|++.|..
T Consensus 587 m~R~G~~~~~~~~~~~~i~-~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~~~~~---~~~h~~nS~~ 662 (822)
T PRK11930 587 MHRLGFEPEDIPELARRLK-KQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEALGYK---PIRHILNSAG 662 (822)
T ss_pred CCCCCCChHHHHHHHHHHH-hCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccCCC---CcEEccCCHH
Confidence 9999999988999999998 8999999999999997533 1 4678999999999998653333 2345554443
Q ss_pred HHHHHHcCCCEEecCccccCCCcc
Q 029062 170 FEQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 170 ~~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
.....+.+.++||||.++||..|.
T Consensus 663 ~~~~~~~~~d~vR~G~~lyG~~p~ 686 (822)
T PRK11930 663 IERFPDYQYDMVRLGIGLYGVSAS 686 (822)
T ss_pred HhCCccccCCeEeeCceeECCCCC
Confidence 322225678999999999998764
No 28
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.77 E-value=6e-18 Score=149.33 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=117.1
Q ss_pred cCCcHHHHHHhh--cCCCCceeeee-cccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
+-++++|+...+ +++.+ ..+. |+....++..+++ .++..+|+|.+.++.+++.+ .++ +++|||+||||
T Consensus 54 ~Vas~~Ea~~lr~~G~~~~--ilvl~~~~~~~~~~~~~~----~~l~~~v~s~~~l~~l~~~~--~~~-~~~v~l~vDtG 124 (354)
T cd06827 54 AVACIEEALALREAGITKP--ILLLEGFFSADELPLAAE----YNLWTVVHSEEQLEWLEQAA--LSK-PLNVWLKLDSG 124 (354)
T ss_pred EEccHHHHHHHHhCCCCCC--EEEEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhc--CCC-CeEEEEEeeCC
Confidence 667899999888 34333 3344 6656677877664 57899999999999999877 465 88999999999
Q ss_pred CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc
Q 029062 93 GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 168 (199)
Q Consensus 93 ~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~ 168 (199)
|+|+|+.++++.++++.+. .+++|++.|+|||++.+++. ...|+++|.++.+.+ . + ..|++.|.
T Consensus 125 --m~R~Gi~~~e~~~~~~~i~-~~~~l~l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~~----~--~---~~h~~nS~ 192 (354)
T cd06827 125 --MHRLGFSPEEYAAAYQRLK-ASPNVASIVLMTHFACADEPDSPGTAKQLAIFEQATAGL----P--G---PRSLANSA 192 (354)
T ss_pred --cCCCCCCHHHHHHHHHHHH-hCCCceEEEEEeeccCCCCCCcHHHHHHHHHHHHHHhcc----C--C---CeeecCCH
Confidence 8999999988999999998 89999999999999975432 345666666655432 1 1 12444443
Q ss_pred CHHHHHHcCCCEEecCccccCCCcc
Q 029062 169 DFEQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 169 d~~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
......+.+.++||||+.+||..|.
T Consensus 193 ~~~~~~~~~~d~vR~G~~lyG~~p~ 217 (354)
T cd06827 193 AILAWPEAHGDWVRPGIMLYGASPF 217 (354)
T ss_pred HHHCCccccCceEccCceeeCCCCC
Confidence 3322236688999999999997764
No 29
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.75 E-value=1.2e-17 Score=147.13 Aligned_cols=176 Identities=17% Similarity=0.231 Sum_probs=134.4
Q ss_pred HHHHHHHhccC-----CcHHHHHHhh--cCCC-CceeeeecccchHHHHhHhccCCCcc-EEEecCcHHHHHHHHHHHHh
Q 029062 7 ALVKITYKKSL-----IKLLRFIDKY--NLPE-DIKWHFVGHLQSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSN 77 (199)
Q Consensus 7 ~~~~~~~~~~~-----n~~qE~~~k~--~~~~-~i~~h~IG~lq~~ki~~l~~~~~~~~-~i~sVDs~~~a~~l~~~a~~ 77 (199)
+...+-+++|. ..+.|++.++ ++.+ .+.+++.|.-....+..+. +..+ +...+||.+.++.+++.+..
T Consensus 57 ~la~~ql~aGa~git~~tl~eae~~a~aGi~dIl~a~p~~~~~~~~~L~~l~---~~~~~~~~~iDs~~~~~~l~~~~~~ 133 (368)
T COG3616 57 ELARIQLDAGAWGITCATLGEAEVFADAGIDDILLAYPLPGRAALAALAELL---ADPPRISVLIDSVEQLDALAALARD 133 (368)
T ss_pred HHHHHHHhcCCceeEeechHHHHHHHccCccceEEecCCCchhHHHHHHHhc---CCCCceEEEeCCHHHHHHHHHHHHh
Confidence 45555566643 5688999988 5544 5788877774444455554 4455 89999999999999999999
Q ss_pred cCCCCceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCCh--HHHHHHHHHHHHHHHHHhC
Q 029062 78 LGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTST--PENFRTLLNCRAEVCKALG 154 (199)
Q Consensus 78 ~g~~~i~VllqIntg~e~~R~Gv~~-~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~--~~~f~~l~~~~~~l~~~~g 154 (199)
.|+ +++|+||||+| ++|+|+.. +.+..+++.+. ..++|++.|+|||++|.+... ...+.. ......++.. |
T Consensus 134 ~~~-pl~v~iE~D~G--~~R~Gv~t~~~~~~La~~~~-~~~~l~~~Gv~~y~gh~~~~~~~~~~~~~-~~a~~~~~~~-g 207 (368)
T COG3616 134 AGK-PLRVLIEIDSG--LHRSGVRTPEVAEALAAEIA-AAPGLRLAGVMTYPGHSYGPGSEVAAAER-VHAAALLGAV-G 207 (368)
T ss_pred cCC-CeeEEEEeCCC--CCccCcCChHHHHHHHHhhh-hccceEEeeeecccccccCCcchhhhhhh-hhHHHHhccc-C
Confidence 998 99999999999 79999975 67788888898 899999999999999855421 112222 3444444443 6
Q ss_pred CCCCCCEEEecCCcCHHHHH-HcCCCEEecCccccCCCcc
Q 029062 155 MAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 155 ~~~~~~~lS~Gms~d~~~a~-~~g~t~VR~Gs~ifgd~~~ 193 (199)
.+ ++.+|.|+|+++..+. ..+.+++|+|+|+|.|..+
T Consensus 208 ~~--~~~vt~ggtp~~~~~~~~~~~~e~r~G~Y~~~D~~~ 245 (368)
T COG3616 208 RA--APVLTSGGTPTAELVAGLSSTTELRAGNYVFNDLVQ 245 (368)
T ss_pred Cc--cceeecCCCCchhhhccCCcceeeccCceeehhhhh
Confidence 66 5899999999999776 4466999999999999865
No 30
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.8e-17 Score=145.80 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=119.9
Q ss_pred cCCcHHHHHHhhcCCC-CceeeeecccchHH-HHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKYNLPE-DIKWHFVGHLQSNK-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~-~i~~h~IG~lq~~k-i~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+-.+++||.+.+.... +.+..+.+...... ...+.+ .++..+|.|.++++.+.+.+... . +++|||+||||
T Consensus 59 ~VA~l~EAi~LR~~gi~~~~IlvL~g~~~~~~~~~~~~----~~l~~~v~s~~ql~~l~~~~~~~-~-~l~vhLkiDTG- 131 (360)
T COG0787 59 GVASLEEAIELREAGITGAPILVLEGFFPAEELELAAA----YNLTPVVNSLEQLEALKNAALKN-K-PLKVHLKIDTG- 131 (360)
T ss_pred EECcHHHHHHHHHcCCCCCCEEEEcCcCChhhHHHHHH----cCCeEEECCHHHHHHHHHhhhhc-C-ceEEEEEECCC-
Confidence 5678999999993322 24566666444444 434443 68999999999999999998877 5 89999999999
Q ss_pred CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC
Q 029062 94 EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 169 (199)
Q Consensus 94 e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d 169 (199)
|+|.|+.|++...++..+. .++++.+.|+|||++.+++. ...|+++|+ +... +++++..|+ +.|..
T Consensus 132 -M~RlG~~~~e~~~~~~~~~-~~~~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~-----~~~~-~~~~~~~h~--aNSa~ 201 (360)
T COG0787 132 -MNRLGLRPEEAVALAIDLI-ALKNLDLEGIFSHFACADEPEDPYTLKQLERFN-----LAKQ-GLPGELSHL--ANSAG 201 (360)
T ss_pred -CCcCCCChHHHHHHHHHHh-hccCCceEEEEcccCCCCCCCChHHHHHHHHHH-----HHhc-cCCCceEEE--eccHH
Confidence 9999999999888888887 78888899999999986542 456777666 2222 565433343 22222
Q ss_pred HHHHHHcCCCEEecCccccCCCcccc
Q 029062 170 FEQAIEMGSTSVRIGSTIFGPREYAK 195 (199)
Q Consensus 170 ~~~a~~~g~t~VR~Gs~ifgd~~~~~ 195 (199)
...--+.++|+||||+.+||..|.+.
T Consensus 202 ~~~~~~~~~d~vRpGi~lYG~~P~~~ 227 (360)
T COG0787 202 LLLGPDYHFDMVRPGIALYGLSPSGG 227 (360)
T ss_pred HhcCcccccceeecceeeecCCcccc
Confidence 21111679999999999999998753
No 31
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=99.44 E-value=2.6e-12 Score=113.10 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=123.2
Q ss_pred CCcHHHHHHhh--cCCCCceeeeecccch-HHHHhHhccCCCcc-EEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 17 LIKLLRFIDKY--NLPEDIKWHFVGHLQS-NKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 17 ~n~~qE~~~k~--~~~~~i~~h~IG~lq~-~ki~~l~~~~~~~~-~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
-.+..|+...+ +++. -...+-|+..+ ..++.+++ .. ..+++||++.++.|++.+++.++ +++|+|+||+|
T Consensus 53 vas~~E~~~~~~~G~~~-~~iv~~gp~~~~~~l~~~~~----~~~~~~~vds~~el~~l~~~~~~~~~-~~~v~lrin~g 126 (368)
T cd06810 53 VASKGELALALAAGVPP-ERIIFTGPAKSVSEIEAALA----SGVDHIVVDSLDELERLNELAKKLGP-KARILLRVNPD 126 (368)
T ss_pred EeCHHHHHHHHHcCCCH-HHEEEcCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHHhCC-CCeEEEEECCC
Confidence 45677877766 3432 13445588654 66787774 34 78999999999999999988887 89999999998
Q ss_pred C-----------CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCCCCC
Q 029062 93 G-----------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAED 158 (199)
Q Consensus 93 ~-----------e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~~~~ 158 (199)
. +.+|+|++++++.++++.+. .++ +++.|||+|.+.. .+...+.++.+.++++.+++. |..
T Consensus 127 ~~~~~~~~~~~~~~srfGi~~~e~~~~~~~~~-~~~-l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~-g~~-- 201 (368)
T cd06810 127 VSAGTHKISTGGLKSKFGLSLSEARAALERAK-ELD-LRLVGLHFHVGSQILDLETIVQALSDARELIEELVEM-GFP-- 201 (368)
T ss_pred CCCCcccCccCCCCCCcCCCHHHHHHHHHHHH-hCC-CcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--
Confidence 3 23899999999999999998 888 9999999998873 234567888888999999874 765
Q ss_pred CCEEEec--CCcCHH----------HH----H-Hc-----C-CCEEecCccccCCCcc
Q 029062 159 QCELSMG--MSGDFE----------QA----I-EM-----G-STSVRIGSTIFGPREY 193 (199)
Q Consensus 159 ~~~lS~G--ms~d~~----------~a----~-~~-----g-~t~VR~Gs~ifgd~~~ 193 (199)
+..+|+| ++.+|. .+ . +. . .-.+-||.++.++...
T Consensus 202 ~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~EpGr~l~~~ag~ 259 (368)
T cd06810 202 LEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKKYFPNDPGVTLILEPGRYIVAQAGV 259 (368)
T ss_pred CCEEEeCCCcccccCCCCCCHHHHHHHHHHHHHHHhccCCCcEEEEecChhhhhhceE
Confidence 5788985 544431 11 1 11 1 2467789998887654
No 32
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=99.42 E-value=1.7e-12 Score=114.92 Aligned_cols=141 Identities=20% Similarity=0.235 Sum_probs=107.7
Q ss_pred CcHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCcc-EEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeC--
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-- 91 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~-~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqInt-- 91 (199)
....|+...+ +++. -+..+.|+. ....+..+++ .. ..++|||.+.++.|.+.+.+.+. +++|+|+||+
T Consensus 60 aS~~E~~~~~~~G~~~-~~I~~~~~~k~~~~l~~a~~----~g~~~i~vds~~el~~l~~~a~~~~~-~~~v~lRin~~~ 133 (382)
T cd06839 60 ASAGELALALEAGVPP-EKILFAGPGKSDAELRRAIE----AGIGTINVESLEELERIDALAEEHGV-VARVALRINPDF 133 (382)
T ss_pred eCHHHHHHHHHcCCCH-HHEEEeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCC
Confidence 4567777665 4432 245677885 5566776664 35 68899999999999999988886 8999999995
Q ss_pred ---------CCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-CC--CChHHHHHHHHHHHHHHHHHhCCCCCC
Q 029062 92 ---------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY--TSTPENFRTLLNCRAEVCKALGMAEDQ 159 (199)
Q Consensus 92 ---------g~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~~--~~~~~~f~~l~~~~~~l~~~~g~~~~~ 159 (199)
+++.+|+|++++++.++++.++ .++++++.|||+|.+. .. +...++++.+.++++.+.+.+|.. +
T Consensus 134 ~~~~~g~~~~~~~sKfG~~~~~~~~~~~~~~-~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~ 210 (382)
T cd06839 134 ELKGSGMKMGGGPSQFGIDVEELPAVLARIA-ALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLP--L 210 (382)
T ss_pred CCCCCccccCCCCCCcCCCHHHHHHHHHHHH-hCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCC--C
Confidence 2234899999999999999998 8899999999999664 22 234677888888888887666765 5
Q ss_pred CEEEecCC
Q 029062 160 CELSMGMS 167 (199)
Q Consensus 160 ~~lS~Gms 167 (199)
..+++|++
T Consensus 211 ~~idiGGG 218 (382)
T cd06839 211 EFLDLGGG 218 (382)
T ss_pred CEEEecCc
Confidence 78888764
No 33
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.40 E-value=9.1e-12 Score=106.87 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=132.2
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
+|.|..|+...++-+-.+..|++=.=-...+...+ +.+| +.++.+++.+++++++|.+.|+ ..+|++.||.|+
T Consensus 57 aesr~~n~~~lr~~g~~~~~~Llr~P~~sei~~vv---~~~D-vs~~sel~~arqlse~A~~~Gk-~h~VlLmVd~~D-- 129 (353)
T COG3457 57 AESRIDNAIRLREAGCTIPGHLLRSPCMSEIEDVV---RKVD-VSTVSELDTARQLSEAAVRMGK-VHDVLLMVDYGD-- 129 (353)
T ss_pred eehhHHHHHHHHHcCCCcCceEeecccHHHHHHHH---HhcC-eEEEecHHHHHHHHHHHHHhCc-ceeEEEEEEccc--
Confidence 78999999988832222344655311234566677 4477 6678999999999999999998 999999999994
Q ss_pred CccCCCh---hhHHHHHHHHHhcCCCeeEEEEEeeCCC--CCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCH
Q 029062 96 SKSGIDP---SSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF 170 (199)
Q Consensus 96 ~R~Gv~~---~~~~~l~~~i~~~~~~L~l~GLmt~~~~--~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~ 170 (199)
-|-|+.+ +++++.++.|. .+||+++.||=|.++. +.-++.+-+..|.+.++.+++..|+. ...+|+|.+.++
T Consensus 130 lreG~~~~~~~~l~~~V~eI~-~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~--l~~vsagnats~ 206 (353)
T COG3457 130 LREGQWGFLIEDLEETVEEIQ-QLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQ--LKQVSAGNATSL 206 (353)
T ss_pred ccCcchhhHHHHHHHHHHHHh-cCCCceEEeeecccccccCcCCCcccHHHHHHHHHHHHHhcCce--eEEecCCCccch
Confidence 7999876 88999999999 9999999999887776 44456666788888899998766887 589999998887
Q ss_pred HHH---HHcCCCEEecCccccCCC
Q 029062 171 EQA---IEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 171 ~~a---~~~g~t~VR~Gs~ifgd~ 191 (199)
..- ...|.|..|||-++++-.
T Consensus 207 ~~L~~~~~~~inhlriG~al~~g~ 230 (353)
T COG3457 207 TLLPMGSLPGINHLRIGEALTGGV 230 (353)
T ss_pred hhhhcccccccccccccceeeccc
Confidence 633 456899999999999985
No 34
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=99.38 E-value=2.5e-11 Score=109.55 Aligned_cols=140 Identities=11% Similarity=0.061 Sum_probs=108.6
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccchHH-HHhHhccCCCccEEEecCcHHHHHHHHHHHHh-cCCCCceEEEEEeCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQSNK-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSN-LGRKPLKVLVQVNTSG 93 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq~~k-i~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~-~g~~~i~VllqIntg~ 93 (199)
.+..|+..-. +++. -...+-|+.++.+ ++.+++ ..+.++|||.+.++.|.+.+++ .+. +++|+|+||++.
T Consensus 66 aS~~E~~~~~~~G~~~-~~I~~~g~~k~~~~i~~a~~----~gi~i~vDs~~el~~l~~~a~~~~~~-~~~v~lRIn~~~ 139 (423)
T cd06842 66 ASLAELRQALAAGVRG-DRIVATGPAKTDEFLWLAVR----HGATIAVDSLDELDRLLALARGYTTG-PARVLLRLSPFP 139 (423)
T ss_pred CCHHHHHHHHHCCCCC-CeEEEECCCCCHHHHHHHHh----CCCEEEECCHHHHHHHHHHHHhcCCC-CCEEEEEEeCCC
Confidence 4567776655 4432 2356779988866 665553 4567999999999999999987 776 899999999974
Q ss_pred --CCCccCCChhhHHHHHHHHHhcC-CCeeEEEEEeeCCCC-CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCC
Q 029062 94 --EESKSGIDPSSCLGIVEHVRLRC-PNLEFSGLMTIGMPD-YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 167 (199)
Q Consensus 94 --e~~R~Gv~~~~~~~l~~~i~~~~-~~L~l~GLmt~~~~~-~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms 167 (199)
.++|+|++++++.++++.++ .+ +++++.||++|.++. .+...+.++.+.++++.+++. |++ +..++.|+.
T Consensus 140 ~~~~sRfGi~~~e~~~~~~~i~-~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~idiGGG 213 (423)
T cd06842 140 ASLPSRFGMPAAEVRTALERLA-QLRERVRLVGFHFHLDGYSAAQRVAALQECLPLIDRARAL-GLA--PRFIDIGGG 213 (423)
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-hcCCCCeEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeCCC
Confidence 36999999999999999998 88 899999999999874 223456778888888888764 765 578887653
No 35
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.36 E-value=3.6e-11 Score=106.12 Aligned_cols=139 Identities=22% Similarity=0.220 Sum_probs=107.1
Q ss_pred cHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe-----
Q 029062 19 KLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN----- 90 (199)
Q Consensus 19 ~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn----- 90 (199)
...|+.... +++. -...+-|+. ....++.+++ .....+++||.+.++.|.+.+.+.++ +++|+|+||
T Consensus 58 S~~E~~~~~~~G~~~-~~I~~~~p~k~~~~l~~a~~---~g~~~~~ids~~el~~l~~~a~~~~~-~~~v~lRv~~~~~~ 132 (373)
T cd06828 58 SGGELYRALKAGFPP-ERIVFTGNGKSDEELELALE---LGILRINVDSLSELERLGEIAPELGK-GAPVALRVNPGVDA 132 (373)
T ss_pred CHHHHHHHHHcCCCc-ccEEEeCCCCCHHHHHHHHH---cCCeEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCC
Confidence 466766555 3332 245666875 5566777774 22389999999999999999998887 899999886
Q ss_pred -------CCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCCCCC
Q 029062 91 -------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQC 160 (199)
Q Consensus 91 -------tg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~~~~ 160 (199)
+|+..+|+|++++++.++++.+. .++++++.|||+|.+... +...++++++.++.+.+++. |.. +.
T Consensus 133 ~~~~~~~~g~~~srfGi~~~e~~~~~~~~~-~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~ 208 (373)
T cd06828 133 GTHPYISTGGKDSKFGIPLEQALEAYRRAK-ELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELREL-GID--LE 208 (373)
T ss_pred CCCCCeecCCCCCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CC
Confidence 45555999999999999999998 889999999999987532 23577888899999988854 765 47
Q ss_pred EEEecC
Q 029062 161 ELSMGM 166 (199)
Q Consensus 161 ~lS~Gm 166 (199)
.+++|+
T Consensus 209 ~idiGG 214 (373)
T cd06828 209 FLDLGG 214 (373)
T ss_pred EEEeCC
Confidence 787765
No 36
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=99.36 E-value=2.3e-11 Score=109.09 Aligned_cols=139 Identities=22% Similarity=0.246 Sum_probs=107.1
Q ss_pred CcHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCCCCceEEEEEeC--
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-- 91 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~~~i~VllqInt-- 91 (199)
....|+..-. +++.+ ...+-|+. ....++.+++ ..+. +++||.+.++.|.+.+.+.+. +++|+|+||.
T Consensus 79 aS~~E~~~~~~~G~~~~-~I~~~gp~k~~~~l~~a~~----~gi~~i~iDs~~el~~l~~~a~~~~~-~~~v~lRIn~~~ 152 (417)
T TIGR01048 79 VSGGELYRALAAGFPPE-KIVFNGNGKSRAELERALE----LGIRCINVDSESELELLNEIAPELGK-KARVSLRVNPGV 152 (417)
T ss_pred eCHHHHHHHHHcCCCcc-eEEEeCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEECCCC
Confidence 3567777655 44421 34555774 5566777774 3554 899999999999999988886 8999999984
Q ss_pred ----------CCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCCCCC
Q 029062 92 ----------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAED 158 (199)
Q Consensus 92 ----------g~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~~~~ 158 (199)
|++.+|+|++++++.++++.+. .++++++.|||+|.+.. .+...+.++.+.++++.+++. |..
T Consensus 153 ~~~~~~~~~~g~~~srfGi~~~~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~-g~~-- 228 (417)
T TIGR01048 153 DAKTHPYISTGLEDSKFGIDVEEALEAYLYAL-QLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAE-GID-- 228 (417)
T ss_pred CCCCCCCeecCCCCCCCCCCHHHHHHHHHHHH-hCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHhc-CCC--
Confidence 4445999999999999999998 89999999999988762 234567888888999988864 664
Q ss_pred CCEEEecC
Q 029062 159 QCELSMGM 166 (199)
Q Consensus 159 ~~~lS~Gm 166 (199)
+..+++|+
T Consensus 229 l~~idiGG 236 (417)
T TIGR01048 229 LEFLDLGG 236 (417)
T ss_pred ccEEEeCC
Confidence 57899886
No 37
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=99.29 E-value=1.7e-10 Score=102.35 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=98.2
Q ss_pred cHHHHHHhhcCCCCceeeeecccchHH-HHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC---
Q 029062 19 KLLRFIDKYNLPEDIKWHFVGHLQSNK-AKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG--- 93 (199)
Q Consensus 19 ~~qE~~~k~~~~~~i~~h~IG~lq~~k-i~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~--- 93 (199)
...|+..-..+...-+..|-|+.++.+ ++.+++ ..+ .++|||.+.++.|.+.+.+.++ +++|+|+||++.
T Consensus 56 S~~E~~~~~~~~~~~~I~~~gp~k~~~~l~~a~~----~gi~~i~vds~~el~~l~~~a~~~~~-~~~v~lRi~~~~~~~ 130 (377)
T cd06843 56 SGGEIAHVRAAVPDAPLIFGGPGKTDSELAQALA----QGVERIHVESELELRRLNAVARRAGR-TAPVLLRVNLALPDL 130 (377)
T ss_pred CHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHHcCC-CceEEEEECCCCCCC
Confidence 456665555322223466778855544 566664 233 4579999999999999988887 899999999862
Q ss_pred ---------CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCCCCCE
Q 029062 94 ---------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCE 161 (199)
Q Consensus 94 ---------e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~~~~~ 161 (199)
..+|+|++++++.++++.+. ++++|++.|||+|.+..- +...+.++.+.++..++.++.|++ ...
T Consensus 131 ~~~~~~~~~~~srfG~~~~~~~~~~~~~~-~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~ 207 (377)
T cd06843 131 PSSTLTMGGQPTPFGIDEADLPDALELLR-DLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLD--LDV 207 (377)
T ss_pred CCcceecCCCCCCCCcCHHHHHHHHHHHH-hCCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCCC--CcE
Confidence 22599999999999999998 889999999999998632 233445556555556665555665 355
Q ss_pred EEec
Q 029062 162 LSMG 165 (199)
Q Consensus 162 lS~G 165 (199)
+..|
T Consensus 208 idiG 211 (377)
T cd06843 208 VNVG 211 (377)
T ss_pred EEec
Confidence 5444
No 38
>PLN02537 diaminopimelate decarboxylase
Probab=99.26 E-value=1e-10 Score=104.91 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=111.1
Q ss_pred cCCCCceeeeecccchHH-HHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe------------CCCC
Q 029062 28 NLPEDIKWHFVGHLQSNK-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGE 94 (199)
Q Consensus 28 ~~~~~i~~h~IG~lq~~k-i~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn------------tg~e 94 (199)
+++.+ ..-|.|+.++.. ++.+++ ..+.++|||.+.++.|.+.+++.+. +++|+|+|| ||+.
T Consensus 84 G~~~~-~ii~~g~~k~~~~l~~a~~----~gv~i~ids~~el~~l~~~a~~~~~-~~~v~lRvnp~~~~~~~~~i~tG~~ 157 (410)
T PLN02537 84 GFDPT-RCIFNGNGKLLEDLVLAAQ----EGVFVNVDSEFDLENIVEAARIAGK-KVNVLLRINPDVDPQVHPYVATGNK 157 (410)
T ss_pred CCCcc-eEEEECCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCccccCCC
Confidence 55432 245567665544 554553 3567899999999999999998887 899999999 4433
Q ss_pred CCccCCChhhHHHHHHHHHhcCC-CeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecC--C-
Q 029062 95 ESKSGIDPSSCLGIVEHVRLRCP-NLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM--S- 167 (199)
Q Consensus 95 ~~R~Gv~~~~~~~l~~~i~~~~~-~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gm--s- 167 (199)
.+|+|++++++.++++.++ +.+ +|++.||++|.++.. +...+.++.+.++.+.+++. |+. +..++.|+ .
T Consensus 158 ~sRfGi~~~~~~~~~~~~~-~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~-g~~--~~~idiGGGf~v 233 (410)
T PLN02537 158 NSKFGIRNEKLQWFLDAVK-AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQ-GFE--LSYLNIGGGLGI 233 (410)
T ss_pred CCCCCCCHHHHHHHHHHHH-hCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHHc-CCC--ccEEEcCCCccc
Confidence 4999999999999999998 888 899999999998732 23456677788888888875 775 45665542 1
Q ss_pred ---------cCHH-HH--H-----HcCC-CEEecCccccCCCcc
Q 029062 168 ---------GDFE-QA--I-----EMGS-TSVRIGSTIFGPREY 193 (199)
Q Consensus 168 ---------~d~~-~a--~-----~~g~-t~VR~Gs~ifgd~~~ 193 (199)
++++ .+ + +.+. -.+-||.|+.++..+
T Consensus 234 ~y~~~~~~~~~~~~~~~~i~~~~~~~~~~li~EPGR~lva~ag~ 277 (410)
T PLN02537 234 DYYHAGAVLPTPRDLIDTVRELVLSRDLTLIIEPGRSLIANTCC 277 (410)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEccChhhhccceE
Confidence 1222 11 1 1233 467788888887654
No 39
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=99.16 E-value=1.1e-09 Score=97.32 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=91.2
Q ss_pred cHHHHHHhh--cCCCCceeeeecccch-HHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC-
Q 029062 19 KLLRFIDKY--NLPEDIKWHFVGHLQS-NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE- 94 (199)
Q Consensus 19 ~~qE~~~k~--~~~~~i~~h~IG~lq~-~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e- 94 (199)
...|+..-. +++. -...+-|+.++ ..++.+++ ..+.++|||++.++.|.+.+.+.++ +++|+|+||++.+
T Consensus 64 S~~E~~~~~~~G~~~-~~Ii~~g~~k~~~~l~~a~~----~g~~i~ids~~el~~l~~~~~~~~~-~~~v~lRv~~~~g~ 137 (379)
T cd06841 64 SAMEYELALKLGVPG-KRIIFNGPYKSKEELEKALE----EGALINIDSFDELERILEIAKELGR-VAKVGIRLNMNYGN 137 (379)
T ss_pred CHHHHHHHHHcCCCh-HHEEEECCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHhcCC-cceEEEEECCCCCC
Confidence 457776665 4432 23556688765 66777774 3468999999999999999988887 8999999998544
Q ss_pred --CCccCCChhhHHHHHHHHHh--cCCCeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHH
Q 029062 95 --ESKSGIDPSSCLGIVEHVRL--RCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEV 149 (199)
Q Consensus 95 --~~R~Gv~~~~~~~l~~~i~~--~~~~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l 149 (199)
++|+|++++++.++++.+.. +.+++++.||++|.+... +...++.+.+.++.+.+
T Consensus 138 ~~~~rfGi~~~e~~~~~~~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
T cd06841 138 NVWSRFGFDIEENGEALAALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL 199 (379)
T ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh
Confidence 89999999777665555540 448999999999998742 23445566666666665
No 40
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=99.14 E-value=5.4e-10 Score=99.79 Aligned_cols=137 Identities=16% Similarity=0.151 Sum_probs=94.5
Q ss_pred cHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC--
Q 029062 19 KLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-- 93 (199)
Q Consensus 19 ~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~-- 93 (199)
...|+..-+ +++.+ +..+-|+. ....++.+++ ..+.++|||++.++.|.+.+.+.+. +++|+|+||++.
T Consensus 79 S~~E~~~~~~~G~~~~-~I~~~gp~k~~~~l~~a~~----~gv~i~vDs~~el~~l~~~a~~~~~-~~~v~LRin~~~~~ 152 (398)
T TIGR03099 79 SAGELAVALDTGYDPG-CISFAGPGKTDAELRRALA----AGVLINVESLRELNRLAALSEALGL-RARVAVRVNPDFEL 152 (398)
T ss_pred CHHHHHHHHHcCCChh-HEEEeCCCCCHHHHHHHHh----CCCEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCC
Confidence 456665544 44321 36677885 5566777664 3568999999999999999988886 899999999631
Q ss_pred ---------CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC-CC--hHHHH-HHHHHHHHHHHHHhCCCCCCC
Q 029062 94 ---------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY-TS--TPENF-RTLLNCRAEVCKALGMAEDQC 160 (199)
Q Consensus 94 ---------e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~-~~--~~~~f-~~l~~~~~~l~~~~g~~~~~~ 160 (199)
..+|+|++++++.++++.+. +. +|++.||++|.+... +. ..+.. +.+..+.+..++ .|+. +.
T Consensus 153 ~~~~~~~~~~~srFGi~~~e~~~~~~~~~-~~-~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~ 227 (398)
T TIGR03099 153 KGSGMKMGGGAKQFGIDAEQVPAALAFIK-AA-DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAES-APAP--VR 227 (398)
T ss_pred CCcccccCCCCCcCCCCHHHHHHHHHHHH-hC-CCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHH-hCCC--CC
Confidence 23899999999999999998 77 899999988877632 21 22222 223333444443 3765 35
Q ss_pred EEEecC
Q 029062 161 ELSMGM 166 (199)
Q Consensus 161 ~lS~Gm 166 (199)
.+++|+
T Consensus 228 ~idiGG 233 (398)
T TIGR03099 228 VINIGG 233 (398)
T ss_pred EEEeCC
Confidence 666664
No 41
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=98.95 E-value=2.4e-08 Score=89.56 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=111.2
Q ss_pred cCCCCceeeeecccchHH-HHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe------------CCCC
Q 029062 28 NLPEDIKWHFVGHLQSNK-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGE 94 (199)
Q Consensus 28 ~~~~~i~~h~IG~lq~~k-i~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn------------tg~e 94 (199)
+++.+ +.+|-|+.++.+ +..+++ ...-.+++||.++++.|++.+... +.+|+++|| ||..
T Consensus 93 G~~~~-~I~f~g~~ks~~ei~~a~e---~gi~~i~vdS~~El~~l~~~a~~~---~~~v~lRInP~~~~~th~~~~tg~~ 165 (394)
T COG0019 93 GFPPE-RIVFSGPAKSEEEIAFALE---LGIKLINVDSEEELERLSAIAPGL---VARVSLRINPGVSAGTHEYIATGGK 165 (394)
T ss_pred CCChh-hEEECCCCCCHHHHHHHHH---cCCcEEEeCCHHHHHHHHHhcccc---CceEEEEECCCCCCccCccccCCcc
Confidence 55433 678888887766 565664 222358999999999999988654 478999999 4566
Q ss_pred CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC---CCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc---
Q 029062 95 ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG--- 168 (199)
Q Consensus 95 ~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~---~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~--- 168 (199)
.+|+|++++++.++.+... +.+++++.||+.|-+. +.+.....++.+.+++.++.+.+|+. ..++++|+=-
T Consensus 166 ~sKFG~~~~~a~~~~~~~~-~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~--l~~inlGGG~gi~ 242 (394)
T COG0019 166 SSKFGISPEEALDVLERAA-KLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQ--LEWLNLGGGLGIT 242 (394)
T ss_pred ccccCCCHHHHHHHHHHHH-hcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCCC--ceEEEecCCcCcC
Confidence 7999999999888999887 8899999999776655 23345677888888888885445776 4778776411
Q ss_pred ----C----HH---HHH----Hc---CC-CEEecCccccCCCcc
Q 029062 169 ----D----FE---QAI----EM---GS-TSVRIGSTIFGPREY 193 (199)
Q Consensus 169 ----d----~~---~a~----~~---g~-t~VR~Gs~ifgd~~~ 193 (199)
+ +. .++ .. .. ..+-||.+|-++..+
T Consensus 243 Y~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~EPGR~iv~~aG~ 286 (394)
T COG0019 243 YEDEYDPPDLAAYAKALKEAFGEYAEDVELILEPGRAIVANAGV 286 (394)
T ss_pred CCCCCCCcCHHHHHHHHHHHHhhccCCCeEEEccchhhhhccee
Confidence 1 11 111 11 12 467889988887765
No 42
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=98.88 E-value=1.3e-07 Score=85.09 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=96.1
Q ss_pred cHHHHHHhh--cCCCCceeeeecccch-HHHHhHhccCC-CccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC--
Q 029062 19 KLLRFIDKY--NLPEDIKWHFVGHLQS-NKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-- 92 (199)
Q Consensus 19 ~~qE~~~k~--~~~~~i~~h~IG~lq~-~ki~~l~~~~~-~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg-- 92 (199)
+..|+..-. +++.+. ..+-++.++ ..++.++.... ...+.+++||++.++.|.+.+.+.+. +.+|+|+||.+
T Consensus 72 S~~El~~al~~G~~~~~-ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~-~~~v~lRinp~~~ 149 (409)
T cd06830 72 SKPELLAALALLKTPDA-LIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGV-KPLLGVRIKLASK 149 (409)
T ss_pred CHHHHHHHHhcCCCCCC-EEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEccCCC
Confidence 345544433 553322 333333233 34555542100 13467899999999999999998887 88999999864
Q ss_pred ---------CCCCccCCChhhHHHHHHHHHhcC-CCeeEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCCCCCC
Q 029062 93 ---------GEESKSGIDPSSCLGIVEHVRLRC-PNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQ 159 (199)
Q Consensus 93 ---------~e~~R~Gv~~~~~~~l~~~i~~~~-~~L~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~~~~~ 159 (199)
+..+|+|++++++.++++.++ +. +++++.||+.|-+.. .+...+.++.+.++.+.+++. |+. +
T Consensus 150 ~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~-~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~-g~~--l 225 (409)
T cd06830 150 GSGKWQESGGDRSKFGLTASEILEVVEKLK-EAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKL-GAN--L 225 (409)
T ss_pred CCcceeccCCCCCCCCCCHHHHHHHHHHHH-hcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCC--C
Confidence 335899999999999999998 76 589999998777652 234567778888888888765 655 3
Q ss_pred CEEEe
Q 029062 160 CELSM 164 (199)
Q Consensus 160 ~~lS~ 164 (199)
..+..
T Consensus 226 ~~iDi 230 (409)
T cd06830 226 RYLDI 230 (409)
T ss_pred cEEEc
Confidence 45543
No 43
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=98.86 E-value=8.5e-08 Score=84.52 Aligned_cols=136 Identities=12% Similarity=0.099 Sum_probs=95.3
Q ss_pred CcHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE 94 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e 94 (199)
....|+..-+ +++. -...+-|+. ....++.+++ .... ...+||++.++.+.+.+.. . ++.+.|.+|+|..
T Consensus 54 aS~~E~~~~~~~G~~~-~~i~~~~~~k~~~~l~~a~~--~gi~-~~~~ds~~el~~l~~~~~~--~-~v~vri~~~~~~~ 126 (362)
T cd00622 54 ASKGEIELVLGLGVSP-ERIIFANPCKSISDIRYAAE--LGVR-LFTFDSEDELEKIAKHAPG--A-KLLLRIATDDSGA 126 (362)
T ss_pred cCHHHHHHHHHcCCCc-ceEEEcCCCCCHHHHHHHHH--cCCC-EEEECCHHHHHHHHHHCCC--C-EEEEEEeeCCCCC
Confidence 4577777666 3432 245666765 5566777774 2232 3458999999999987742 3 5677777787732
Q ss_pred C----CccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEec
Q 029062 95 E----SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 165 (199)
Q Consensus 95 ~----~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~G 165 (199)
. +|+|++++++.++++.+. . .++++.|||+|.+... +...++++.+.++++.+++. |.. +..+..|
T Consensus 127 ~~~~~sRfGi~~~~~~~~~~~~~-~-~~~~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~id~G 199 (362)
T cd00622 127 LCPLSRKFGADPEEARELLRRAK-E-LGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAEL-GFK--LKLLDIG 199 (362)
T ss_pred CCcccCCCCCCHHHHHHHHHHHH-H-cCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--cCEEEeC
Confidence 2 289999999999999988 6 5899999999998732 23466778888888888764 654 4556443
No 44
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=98.81 E-value=5.6e-08 Score=81.66 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=87.5
Q ss_pred eeeeecccchHH-HHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCC
Q 029062 34 KWHFVGHLQSNK-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGI 100 (199)
Q Consensus 34 ~~h~IG~lq~~k-i~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg------------~e~~R~Gv 100 (199)
+..|-|+.++.. +..+++ .--..++|||++.++.|.+.+.+. +|+|+||.+ +..+|+|+
T Consensus 66 ~Ii~~gp~k~~~~l~~a~~---~~~~~i~vDs~~el~~l~~~~~~~-----~v~lRin~~~~~~~~~~~~~g~~~skFGi 137 (251)
T PF02784_consen 66 RIIFTGPGKSDEELEEAIE---NGVATINVDSLEELERLAELAPEA-----RVGLRINPGIGAGSHPKISTGGKDSKFGI 137 (251)
T ss_dssp GEEEECSS--HHHHHHHHH---HTESEEEESSHHHHHHHHHHHCTH-----EEEEEBE-SESTTTSCHHCSSSHTSSSSB
T ss_pred ceeEecCcccHHHHHHHHh---CCceEEEeCCHHHHHHHhccCCCc-----eeeEEEeeccccccccccCCCCCCCcCCc
Confidence 567789987775 555552 123467899999999999987543 789999854 33479999
Q ss_pred Chhh-HHHHHHHHHhcCCCeeEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEec
Q 029062 101 DPSS-CLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 165 (199)
Q Consensus 101 ~~~~-~~~l~~~i~~~~~~L~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~G 165 (199)
++++ +.++++.+. ..+ +++.||+.|.+.. .+...+..+.+.++.+.+.+.+|+.. ...+..|
T Consensus 138 ~~~~~~~~~l~~~~-~~~-l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-l~~idiG 203 (251)
T PF02784_consen 138 DIEEEAEEALERAK-ELG-LRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFED-LEFIDIG 203 (251)
T ss_dssp EGGGHHHHHHHHHH-HTT-EEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT--SEEEEE
T ss_pred ChHHHHHHHHHhhc-cce-EEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhcccccccc-ccEEEee
Confidence 9988 999999998 887 9999999887652 23456778888888888886678652 3566555
No 45
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=98.70 E-value=8.5e-07 Score=80.15 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=91.0
Q ss_pred cHHHHHHhh--cCCCCc---eeeeecccch-HHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 19 KLLRFIDKY--NLPEDI---KWHFVGHLQS-NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 19 ~~qE~~~k~--~~~~~i---~~h~IG~lq~-~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
+..|++.-. +++.++ ...|-|+.++ .+++.+++ ..+.+++||.+.++.|++.+. ..+|+|+||.+
T Consensus 76 S~~E~~~a~~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~----~gv~i~vDs~~el~~i~~~~~-----~~~v~lRvn~~ 146 (420)
T PRK11165 76 SLGEIERALAAGYKPGTEPDEIVFTADVIDRATLARVVE----LKIPVNAGSIDMLDQLGQVSP-----GHRVWLRINPG 146 (420)
T ss_pred CHHHHHHHHHcCCCCCCCCCeEEEeCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcC-----CCcEEEEECCC
Confidence 456666555 554332 5667799855 56777775 245778999999999998864 35799999965
Q ss_pred C------------CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCC
Q 029062 93 G------------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQC 160 (199)
Q Consensus 93 ~------------e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~ 160 (199)
. ..+|+|++++++..+.+.++ . .+|++.||++|.++..+ .....+....+.+.+++ .|.. +.
T Consensus 147 ~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~-~-~~l~l~GlH~H~GS~~~-~~~~~~~~~~l~~~~~~-~g~~--~~ 220 (420)
T PRK11165 147 FGHGHSQKTNTGGENSKHGIWHEDLPAALAVIQ-R-YGLKLVGIHMHIGSGVD-YGHLEQVCGAMVRQVIE-LGQD--IE 220 (420)
T ss_pred CCCCCCCceecCCCCCCCCCCHHHHHHHHHHHH-h-CCCcEEEEEEeccCCCC-hHHHHHHHHHHHHHHHH-hCCC--Cc
Confidence 2 34789998888888777776 5 58999999999987432 22222223333444444 3665 57
Q ss_pred EEEecCCc
Q 029062 161 ELSMGMSG 168 (199)
Q Consensus 161 ~lS~Gms~ 168 (199)
.++.|+..
T Consensus 221 ~IdiGGGf 228 (420)
T PRK11165 221 AISAGGGL 228 (420)
T ss_pred EEEeCCCc
Confidence 78777654
No 46
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=98.52 E-value=4.2e-06 Score=74.60 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=90.8
Q ss_pred HHHHHHhh--cCCCCceeeeecccchHH-HHhHhccCCCccEEEecCcHHHHHHHHHHHHh-cCCCCceEEEEEeCC---
Q 029062 20 LLRFIDKY--NLPEDIKWHFVGHLQSNK-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSN-LGRKPLKVLVQVNTS--- 92 (199)
Q Consensus 20 ~qE~~~k~--~~~~~i~~h~IG~lq~~k-i~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~-~g~~~i~VllqIntg--- 92 (199)
..|+..-. +++.+ +..|-|+.++.+ +..+++ ..+.+++||++++++|.+.+.+ .+. ..+|+|+||.+
T Consensus 58 ~~El~~al~~G~~~~-~Ii~~gp~K~~~~L~~ai~----~gv~i~iDS~~El~~i~~~a~~~~~~-~~~v~lRvnp~~~~ 131 (379)
T cd06836 58 PGELELALAAGFPPE-RIVFDSPAKTRAELREALE----LGVAINIDNFQELERIDALVAEFKEA-SSRIGLRVNPQVGA 131 (379)
T ss_pred HHHHHHHHHcCCChh-hEEEeCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHhcCC-CceEEEEECCCCCC
Confidence 44444433 45432 467779987755 555554 2345789999999999999977 665 78999999853
Q ss_pred ---------CCCCccCCChh--hHHHHHHHHHhcCCCeeEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCC-CC
Q 029062 93 ---------GEESKSGIDPS--SCLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGM-AE 157 (199)
Q Consensus 93 ---------~e~~R~Gv~~~--~~~~l~~~i~~~~~~L~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~-~~ 157 (199)
...+|+|++++ ++.++++.+. ..++ +.||+.|-+.. .+...+.++.+.++.+.+++.+|. .
T Consensus 132 ~~~~~~~~~~~~skFG~~~~~~~~~~~~~~~~-~~~~--l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~- 207 (379)
T cd06836 132 GKIGALSTATATSKFGVALEDGARDEIIDAFA-RRPW--LNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQ- 207 (379)
T ss_pred CCccccccCCCCCCCCcCcchhHHHHHHHHHh-cCCC--eEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC-
Confidence 34689999997 5666666665 5454 67998887752 233455666677777788765553 3
Q ss_pred CCCEEEec
Q 029062 158 DQCELSMG 165 (199)
Q Consensus 158 ~~~~lS~G 165 (199)
...+..|
T Consensus 208 -~~~IDiG 214 (379)
T cd06836 208 -ITRIDIG 214 (379)
T ss_pred -CcEEEeC
Confidence 3556554
No 47
>PRK05354 arginine decarboxylase; Provisional
Probab=98.51 E-value=1.7e-06 Score=81.83 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=82.1
Q ss_pred ccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCccCCChhhHHHHHHHHHhcCCCe-eEEE
Q 029062 56 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDPSSCLGIVEHVRLRCPNL-EFSG 123 (199)
Q Consensus 56 ~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn-----------tg~e~~R~Gv~~~~~~~l~~~i~~~~~~L-~l~G 123 (199)
..++++|||++.++.|.+.+++.++ +..|.|+|| ||++.+|||++++++.++++.++ +.+.+ ++.|
T Consensus 171 ~~v~ivIDs~~EL~~I~~~a~~~~~-~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~~~ei~~~i~~lk-~~~~l~~L~G 248 (634)
T PRK05354 171 HKVFIVIEKLSELELILEEAKELGV-KPRLGVRARLASQGSGKWQSSGGEKSKFGLSATEVLEAVERLR-EAGLLDCLQL 248 (634)
T ss_pred CCEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEEecCCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCceEE
Confidence 3678999999999999999999887 889999986 35567899999999999999998 88877 6999
Q ss_pred EEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEe
Q 029062 124 LMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQCELSM 164 (199)
Q Consensus 124 Lmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~ 164 (199)
|+.|-+.. .+...+.++.+.++...+++. |.+ ...+..
T Consensus 249 LHfHiGSQi~d~~~~~~al~e~~~~~~eL~~~-G~~--l~~LDI 289 (634)
T PRK05354 249 LHFHLGSQIANIRDIKTAVREAARFYVELRKL-GAP--IQYLDV 289 (634)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEe
Confidence 97777652 223566777777888888764 654 344533
No 48
>PLN02439 arginine decarboxylase
Probab=98.50 E-value=2.2e-06 Score=80.13 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=79.8
Q ss_pred ccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCccCCChhhHHHHHHHHHhcCCCee-EEE
Q 029062 56 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDPSSCLGIVEHVRLRCPNLE-FSG 123 (199)
Q Consensus 56 ~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn-----------tg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~-l~G 123 (199)
..+++++||++.++.|.+.+++.++ +..|.|+|| +|++.+|||++++++.++++.++ +.+.+. +.|
T Consensus 108 ~~~~IviDs~~EL~~I~~~a~~l~~-~p~IglRi~~~~~~~~~~~~tgg~~sKFGl~~~ei~~~i~~lk-~~~~l~~L~G 185 (559)
T PLN02439 108 LNTVIVLEQEEELDLVIEASQRLGV-RPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTATEIVRVVRKLR-KEGMLDCLQL 185 (559)
T ss_pred CCeEEEECCHHHHHHHHHHHHHcCC-CceEEEEEecCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH-hCCCCCceEE
Confidence 4568899999999999999999887 778888886 56667999999999999999998 888886 999
Q ss_pred EEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCCC
Q 029062 124 LMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMA 156 (199)
Q Consensus 124 Lmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~~ 156 (199)
|+.|-+.. .+.....++.+.++...+++. |.+
T Consensus 186 LHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~~-G~~ 220 (559)
T PLN02439 186 LHFHIGSQIPSTSLLKDGVSEAAQIYCELVRL-GAP 220 (559)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 97776652 234567777788888888764 654
No 49
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=98.49 E-value=7.4e-06 Score=77.48 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=91.1
Q ss_pred ceeeeecccchHHHHhHhccC-CCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCccCC
Q 029062 33 IKWHFVGHLQSNKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGI 100 (199)
Q Consensus 33 i~~h~IG~lq~~ki~~l~~~~-~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn-----------tg~e~~R~Gv 100 (199)
..+.+=|.....-++.++... -...++++|||++.++.|.+.+++.|+ +..+.|+|| ||++.+|||+
T Consensus 140 ~~Ii~NG~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~-~~~IglRvnl~~~~~g~~~~tgg~~SKFGl 218 (624)
T TIGR01273 140 APIVCNGYKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGV-KPKLGLRARLASKGSGKWASSGGEKSKFGL 218 (624)
T ss_pred CEEEeCCCCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCC-CceEEEEEecCCCCCCCcccCCCCCCCCCC
Confidence 445555643333355443110 113678999999999999999999987 889999997 4556689999
Q ss_pred ChhhHHHHHHHHHhcCCCe-eEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEe
Q 029062 101 DPSSCLGIVEHVRLRCPNL-EFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQCELSM 164 (199)
Q Consensus 101 ~~~~~~~l~~~i~~~~~~L-~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~ 164 (199)
+++++.++++.++ +.+.+ ++.||+.|-+.. .+.....++.+.+++..+++. |.+ +..+..
T Consensus 219 ~~~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~eL~~~-G~~--l~~LDI 282 (624)
T TIGR01273 219 SATQILEVVRLLE-QNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCELRKL-GAK--ITYVDV 282 (624)
T ss_pred CHHHHHHHHHHHH-hcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEe
Confidence 9999999999998 87766 499997776652 234567778888888888874 654 344533
No 50
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=98.35 E-value=9.9e-06 Score=72.75 Aligned_cols=158 Identities=12% Similarity=0.109 Sum_probs=100.5
Q ss_pred HHHHHHhh--cCCCCceeeeecccchHH-HHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC-
Q 029062 20 LLRFIDKY--NLPEDIKWHFVGHLQSNK-AKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE- 94 (199)
Q Consensus 20 ~qE~~~k~--~~~~~i~~h~IG~lq~~k-i~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e- 94 (199)
..|+..-. +++. =+..|-|+.++.+ ++.+++ ..+ .+++||++.+++|.+.+ . ..+|+|+||.+..
T Consensus 67 ~gEl~~al~~G~~~-~~Iif~gp~K~~~~l~~a~~----~Gv~~i~vDS~~El~~i~~~~----~-~~~v~lRi~~~~~~ 136 (394)
T cd06831 67 KNEMALVQELGVSP-ENIIYTNPCKQASQIKYAAK----VGVNIMTCDNEIELKKIARNH----P-NAKLLLHIATEDNI 136 (394)
T ss_pred HHHHHHHHhcCCCc-CCEEEeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHhC----C-CCcEEEEEeccCCC
Confidence 44444333 4443 2577789976665 555553 244 56899999999999755 2 4578888885421
Q ss_pred -----CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecC
Q 029062 95 -----ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 166 (199)
Q Consensus 95 -----~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gm 166 (199)
.+|+|++++++.++++.++ .. ++++.||+.|-+..- +.....++....+.+.+++ .|+. +..+..|+
T Consensus 137 ~~~~~~~KFGi~~~~~~~~l~~~~-~~-~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~-~g~~--l~~ldiGG 211 (394)
T cd06831 137 GGEEMNMKFGTTLKNCRHLLECAK-EL-DVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEE-FGFK--MNMLDIGG 211 (394)
T ss_pred CCCccCCCCCCCHHHHHHHHHHHH-HC-CCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCC--CCEEEeCC
Confidence 2699999999999999998 65 799999988876532 2233444445556666654 4765 35665543
Q ss_pred -C----cCHHH---HH----Hc------CC-CEEecCccccCCCc
Q 029062 167 -S----GDFEQ---AI----EM------GS-TSVRIGSTIFGPRE 192 (199)
Q Consensus 167 -s----~d~~~---a~----~~------g~-t~VR~Gs~ifgd~~ 192 (199)
- +|++. .+ +. +. -.+-||.++.++..
T Consensus 212 Gf~~~~~~~~~~~~~i~~~l~~~~~~~~~~~li~EPGR~lva~ag 256 (394)
T cd06831 212 GFTGSEIQLEEVNHVIRPLLDVYFPEGSGIQIIAEPGSYYVSSAF 256 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCcCCCCEEEEeCChhhhhcce
Confidence 1 24331 11 11 12 35678888887664
No 51
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=98.15 E-value=8.6e-05 Score=65.98 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=75.2
Q ss_pred eeeeecccchH-HHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCC
Q 029062 34 KWHFVGHLQSN-KAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGI 100 (199)
Q Consensus 34 ~~h~IG~lq~~-ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg------------~e~~R~Gv 100 (199)
+.-|-|+.++. .++.+++ ..+.+++||+++++.+.+.+. ..+|+|+||.+ +..+|+|+
T Consensus 83 ~Iif~gp~K~~~~l~~a~~----~gv~i~~Ds~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~ 153 (368)
T cd06840 83 RVLFTPNFAARSEYEQALE----LGVNVTVDNLHPLREWPELFR-----GREVILRIDPGQGEGHHKHVRTGGPESKFGL 153 (368)
T ss_pred eEEEcCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcc-----cCCEEEEECCCCCCCCCCceecCCCCCCCCC
Confidence 46677898864 4777774 233559999999999988653 35799999864 23589999
Q ss_pred ChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHH
Q 029062 101 DPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKA 152 (199)
Q Consensus 101 ~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~ 152 (199)
+++++.++++.++ .. ++++.||+.|-+..... .+.|.+..+....+.+.
T Consensus 154 ~~~~~~~~l~~~~-~~-~l~l~GlhfH~GS~~~~-~~~~~~~~~~~~~l~~~ 202 (368)
T cd06840 154 DVDELDEARDLAK-KA-GIIVIGLHAHSGSGVED-TDHWARHGDYLASLARH 202 (368)
T ss_pred CHHHHHHHHHHHH-hC-CCcEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHh
Confidence 9999999998887 55 79999998887753222 22344444444555443
No 52
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=98.11 E-value=0.00012 Score=65.46 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=75.1
Q ss_pred eeeecccchH-HHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCC
Q 029062 35 WHFVGHLQSN-KAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGID 101 (199)
Q Consensus 35 ~h~IG~lq~~-ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg------------~e~~R~Gv~ 101 (199)
..+-|+.++. .++.+++ ....+++||+++++.|.+.+++.+. ..+|+|+||.+ +..+|||++
T Consensus 73 ~i~~~~~k~~~el~~a~~----~g~~i~idS~~el~~l~~~a~~~~~-~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~ 147 (380)
T TIGR01047 73 IHVYSPAYSEEDVPEIIP----LADHIIFNSLAQWARYRHLVEGKNS-AVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQ 147 (380)
T ss_pred EEEECCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCcccccCCCCCCCCCCC
Confidence 4555876544 3555553 2348899999999999999987776 78999999953 346999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEec
Q 029062 102 PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 165 (199)
Q Consensus 102 ~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~G 165 (199)
++++.+.. .+++.||+.|-+.. .. .+.|.++.+....+..+++.. +..+..|
T Consensus 148 ~~~~~~~~--------~~~i~GlH~HiGS~-~~-~~~~~~~i~~~~~~~~~~~~~--~~~iDiG 199 (380)
T TIGR01047 148 ADHFEESL--------LDGINGLHFHTLCE-KD-ADALERTLEVIEERFGEYLPQ--MDWVNFG 199 (380)
T ss_pred HHHHhHhH--------hhcCcEEEEecCCC-CC-HHHHHHHHHHHHHHHHHhhCC--CCEEEeC
Confidence 98765431 24677998877654 22 334555555544444433322 4566554
No 53
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=97.86 E-value=0.00039 Score=68.29 Aligned_cols=117 Identities=14% Similarity=0.216 Sum_probs=79.0
Q ss_pred eeeeecccch-HHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCC
Q 029062 34 KWHFVGHLQS-NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGI 100 (199)
Q Consensus 34 ~~h~IG~lq~-~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg------------~e~~R~Gv 100 (199)
...|-|+.++ ..+..+++ ..+.+++||++.++.|.+.+.. .+|+|+||.+ +..+|+|+
T Consensus 574 ~Ii~~gp~K~~~~l~~A~~----~gv~i~vDS~~EL~~i~~~~~~-----~~v~lRinp~~~~~~~~~~~~~~~~sKFGi 644 (861)
T PRK08961 574 RVLFTPNFAPRAEYEAAFA----LGVTVTLDNVEPLRNWPELFRG-----REVWLRIDPGHGDGHHEKVRTGGKESKFGL 644 (861)
T ss_pred eEEECCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhCCC-----CcEEEEECCCCCCCCCcccccCCCCCCCCC
Confidence 4556688775 44665563 3446799999999999987632 4688888853 33589999
Q ss_pred ChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEec
Q 029062 101 DPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 165 (199)
Q Consensus 101 ~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~G 165 (199)
+++++.++++.+. . .++++.||+.|-+..... .+.|..+.+....+.+.+ .. ...+.+|
T Consensus 645 ~~~~~~~~~~~~~-~-~~l~l~GlH~H~GS~~~~-~~~~~~~~~~~~~l~~~~-~~--~~~iDiG 703 (861)
T PRK08961 645 SQTRIDEFVDLAK-T-LGITVVGLHAHLGSGIET-GEHWRRMADELASFARRF-PD--VRTIDLG 703 (861)
T ss_pred CHHHHHHHHHHHH-h-CCCCEEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhc-cC--CcEEEec
Confidence 9999999999887 5 579999998888753221 223444545554554442 22 3556554
No 54
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=97.28 E-value=0.0049 Score=54.25 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=57.6
Q ss_pred eeeeecccchHH-HHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC------------CCCccCC
Q 029062 34 KWHFVGHLQSNK-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------------EESKSGI 100 (199)
Q Consensus 34 ~~h~IG~lq~~k-i~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~------------e~~R~Gv 100 (199)
...+-|+..+.. +..+++ . ....++||+++++.|.+.+.+ . +.+|+|+||.+. ..+|+|+
T Consensus 70 ~~i~~~~~k~~~el~~a~~---~-~~~~~~Ds~~EL~~l~~~~~~--~-~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~ 142 (346)
T cd06829 70 EVHTYSPAYRDDEIDEILR---L-ADHIIFNSLSQLERFKDRAKA--A-GISVGLRINPEYSEVETDLYDPCAPGSRLGV 142 (346)
T ss_pred ceEEECCCCCHHHHHHHHH---c-CCEEEECCHHHHHHHHHHHhc--c-CCeEEEEECCCCCCCCCceecCCCCCCCCCC
Confidence 344447766543 554553 2 247899999999999998875 3 678999998542 3689999
Q ss_pred ChhhHHHHHHHHHhcCCCeeEEEEEeeCCC
Q 029062 101 DPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 130 (199)
Q Consensus 101 ~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~ 130 (199)
+++++.+ . -++++.||+.|-+.
T Consensus 143 ~~~~~~~-------~-~~~~v~Glh~HvGS 164 (346)
T cd06829 143 TLDELEE-------E-DLDGIEGLHFHTLC 164 (346)
T ss_pred ChHHhhh-------h-hhcCceEEEEccCc
Confidence 9976442 1 13678899887765
No 55
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0041 Score=55.83 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=81.0
Q ss_pred eeeeecccchHH-HHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCccCCChhhHH
Q 029062 34 KWHFVGHLQSNK-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCL 106 (199)
Q Consensus 34 ~~h~IG~lq~~k-i~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e------~~R~Gv~~~~~~ 106 (199)
+.-|.+|.+..+ ++.++. ..+ -+.++|+...+.++.+ . .. ..+++|.|+|... ..|+|++.+++.
T Consensus 125 riIyanpcK~~s~IkyAa~--~gV-~~~tfDne~el~kv~~---~-hP-~a~llLrIatdds~a~~~l~~KFG~~~~~~~ 196 (448)
T KOG0622|consen 125 RIIYANPCKQVSQIKYAAK--HGV-SVMTFDNEEELEKVAK---S-HP-NANLLLRIATDDSTATCRLNLKFGCSLDNCR 196 (448)
T ss_pred HeEecCCCccHHHHHHHHH--cCC-eEEeecCHHHHHHHHH---h-CC-CceEEEEEccCCCcccccccCccCCCHHHHH
Confidence 566778876555 555553 223 4556999998887776 3 33 6789999986543 458999999999
Q ss_pred HHHHHHHhcCCCeeEEEEEeeCCC---CCCChHHHHHHHHHHHHHHHHHhCCC
Q 029062 107 GIVEHVRLRCPNLEFSGLMTIGMP---DYTSTPENFRTLLNCRAEVCKALGMA 156 (199)
Q Consensus 107 ~l~~~i~~~~~~L~l~GLmt~~~~---~~~~~~~~f~~l~~~~~~l~~~~g~~ 156 (199)
.+++..+ .+ +|++.|+..|-+. +.+..+++.+..+.+++...+ +|..
T Consensus 197 ~lLd~ak-~l-~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e-~Gf~ 246 (448)
T KOG0622|consen 197 HLLDMAK-EL-ELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAE-LGFE 246 (448)
T ss_pred HHHHHHH-Hc-CceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHh-cCce
Confidence 9999998 77 7999999666554 223456777888888888775 4776
No 56
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.38 E-value=0.92 Score=38.01 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=48.3
Q ss_pred eeEEEEEeeCCCC--CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecCccccCCCc
Q 029062 119 LEFSGLMTIGMPD--YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 119 L~l~GLmt~~~~~--~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+...=+||..|.- .......+.+++++++.+.++ |+.. .-.+=.|.+.+ .+...++|+|.+=.||++|+..+
T Consensus 141 vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~-~~~~-~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 141 IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNR-RVEK-LISIDGSMTLELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhc-CCCc-eEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCCC
Confidence 3344589987762 223456788888888877664 6542 13455566533 33556899999999999998544
No 57
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=94.91 E-value=0.8 Score=38.13 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=85.5
Q ss_pred ceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC----------CCCccCC--
Q 029062 33 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG----------EESKSGI-- 100 (199)
Q Consensus 33 i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~----------e~~R~Gv-- 100 (199)
++..=+|+..-..++..... + .++=.=|++++. .+.+ +.+.|..-+.+|.| ++.. ..-|.|+
T Consensus 43 VPNiTfGp~~v~~l~~~t~~-p-~DvHLMV~~p~~--~i~~-fa~agad~It~H~E-~~~~~~r~i~~Ik~~G~kaGv~l 116 (220)
T COG0036 43 VPNITFGPPVVKALRKITDL-P-LDVHLMVENPDR--YIEA-FAKAGADIITFHAE-ATEHIHRTIQLIKELGVKAGLVL 116 (220)
T ss_pred CCCcccCHHHHHHHhhcCCC-c-eEEEEecCCHHH--HHHH-HHHhCCCEEEEEec-cCcCHHHHHHHHHHcCCeEEEEE
Confidence 34444566544455443221 1 344344555532 2333 33344325788888 3210 0135565
Q ss_pred ChhhHHHHHHHHHhcCCCeeEEEEEeeCCC--CCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCH-HHHHHcC
Q 029062 101 DPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF-EQAIEMG 177 (199)
Q Consensus 101 ~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~--~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~-~~a~~~g 177 (199)
.|+.=.+.++.+. +.+.+.=+||..|. ........+.+++++++.+.++ | +. ..++=.|.+.+- +...++|
T Consensus 117 nP~Tp~~~i~~~l---~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~-~-~~-~IeVDGGI~~~t~~~~~~AG 190 (220)
T COG0036 117 NPATPLEALEPVL---DDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDER-L-DI-LIEVDGGINLETIKQLAAAG 190 (220)
T ss_pred CCCCCHHHHHHHH---hhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhccc-C-Ce-EEEEeCCcCHHHHHHHHHcC
Confidence 3433344555444 33556668998876 2334567888888888887753 4 32 245677776553 3445789
Q ss_pred CCEEecCccccCCCccc
Q 029062 178 STSVRIGSTIFGPREYA 194 (199)
Q Consensus 178 ~t~VR~Gs~ifgd~~~~ 194 (199)
+|.+=.||++|+..+|.
T Consensus 191 ad~~VaGSalF~~~d~~ 207 (220)
T COG0036 191 ADVFVAGSALFGADDYK 207 (220)
T ss_pred CCEEEEEEEEeCCccHH
Confidence 99999999999987653
No 58
>PRK14057 epimerase; Provisional
Probab=93.75 E-value=2.9 Score=35.62 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=57.2
Q ss_pred ccCC--Ch-hhHHHHHHHHHhcCCCeeEEEEEeeCCCC--CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-H
Q 029062 97 KSGI--DP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPD--YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-F 170 (199)
Q Consensus 97 R~Gv--~~-~~~~~l~~~i~~~~~~L~l~GLmt~~~~~--~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~ 170 (199)
|.|+ .| ..+..+...+. ..+ +.=+||..|.- .......+++++++++.+.++ |+.. .-.+=.|.+.+ .
T Consensus 134 kaGlAlnP~Tp~e~i~~~l~-~vD---~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~-~~~~-~IeVDGGI~~~ti 207 (254)
T PRK14057 134 IRGISLCPATPLDVIIPILS-DVE---VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDK-REGK-IIVIDGSLTQDQL 207 (254)
T ss_pred eeEEEECCCCCHHHHHHHHH-hCC---EEEEEEECCCCCchhccHHHHHHHHHHHHHHHhc-CCCc-eEEEECCCCHHHH
Confidence 4676 34 23333333343 433 44489987762 233567888888888887764 6542 13456677644 3
Q ss_pred HHHHHcCCCEEecCccccCCCc
Q 029062 171 EQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 171 ~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+...++|++.+=.||++|+..+
T Consensus 208 ~~l~~aGad~~V~GSalF~~~d 229 (254)
T PRK14057 208 PSLIAQGIDRVVSGSALFRDDR 229 (254)
T ss_pred HHHHHCCCCEEEEChHhhCCCC
Confidence 3556899999999999998544
No 59
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=93.64 E-value=0.21 Score=40.90 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=78.2
Q ss_pred CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHH
Q 029062 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEH 111 (199)
Q Consensus 32 ~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~ 111 (199)
.+..|++-.-..+.++.+++. +.-.+..=+++.+...++-+..++.|. . +=|-+|.+ .+.+. ++.
T Consensus 59 ~~DvHLMv~~P~~~i~~~~~~-g~~~i~~H~E~~~~~~~~i~~ik~~g~-k--~GialnP~-------T~~~~----~~~ 123 (201)
T PF00834_consen 59 PLDVHLMVENPERYIEEFAEA-GADYITFHAEATEDPKETIKYIKEAGI-K--AGIALNPE-------TPVEE----LEP 123 (201)
T ss_dssp EEEEEEESSSGGGHHHHHHHH-T-SEEEEEGGGTTTHHHHHHHHHHTTS-E--EEEEE-TT-------S-GGG----GTT
T ss_pred cEEEEeeeccHHHHHHHHHhc-CCCEEEEcccchhCHHHHHHHHHHhCC-C--EEEEEECC-------CCchH----HHH
Confidence 356676655555666666642 212344445555555555566666665 3 33444443 12222 222
Q ss_pred HHhcCCCeeEEEEEeeCCCCC--CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecCcccc
Q 029062 112 VRLRCPNLEFSGLMTIGMPDY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIF 188 (199)
Q Consensus 112 i~~~~~~L~l~GLmt~~~~~~--~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~Gs~if 188 (199)
+ .+.+.+.=+||..|.-. ......+++++++++.+.+. |... .-.+=.|.+.+ .+...++|++.+=.||+||
T Consensus 124 ~---l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~-~~~~-~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 124 Y---LDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPEN-GLDF-EIEVDGGINEENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp T---GCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHH-TCGS-EEEEESSESTTTHHHHHHHT--EEEESHHHH
T ss_pred H---hhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhc-CCce-EEEEECCCCHHHHHHHHHcCCCEEEECHHHh
Confidence 2 24566777899877522 22356788888888888775 6542 13456666655 4455689999999999999
Q ss_pred CC
Q 029062 189 GP 190 (199)
Q Consensus 189 gd 190 (199)
+.
T Consensus 199 ~~ 200 (201)
T PF00834_consen 199 KA 200 (201)
T ss_dssp TS
T ss_pred CC
Confidence 84
No 60
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=93.21 E-value=3.2 Score=34.56 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=48.2
Q ss_pred eeEEEEEeeCCCC--CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecCccccCCCc
Q 029062 119 LEFSGLMTIGMPD--YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 119 L~l~GLmt~~~~~--~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+...=+||..|.- .......+++++++++.+.+. +... .-.+-.|.+.+ .+...+.|++.+=.||+||+..+
T Consensus 133 vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~-~~~~-~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 133 LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDAL-GKPI-RLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhc-CCCe-eEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 3344489987762 233466788888888777654 5431 13556677644 33446899999999999998544
No 61
>PRK08005 epimerase; Validated
Probab=91.51 E-value=6.6 Score=32.43 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=44.0
Q ss_pred eeEEEEEeeCCCCC--CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecCccccCCCcc
Q 029062 119 LEFSGLMTIGMPDY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 119 L~l~GLmt~~~~~~--~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
+...=+||.-|.-. ......+++++++++.+.+ . .-.+=.|.+.+ .+...++|++.+=.||+||+..++
T Consensus 129 vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~---~---~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~d~ 200 (210)
T PRK08005 129 LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPA---A---ECWADGGITLRAARLLAAAGAQHLVIGRALFTTANY 200 (210)
T ss_pred cCEEEEEEecCCCccceecHHHHHHHHHHHHhccc---C---CEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCH
Confidence 33444899877622 2345677777776554432 1 13456677644 335568999999999999985543
No 62
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=88.50 E-value=1.5 Score=41.25 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=66.9
Q ss_pred ccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCccCCChhhHHHHHHHHHhcCC---CeeE
Q 029062 56 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDPSSCLGIVEHVRLRCP---NLEF 121 (199)
Q Consensus 56 ~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn-----------tg~e~~R~Gv~~~~~~~l~~~i~~~~~---~L~l 121 (199)
.++.+++.-+..++.+-+.|++.|. +..+=|++- +|++.+|||.++.+++++++.++ ... +|.+
T Consensus 187 h~v~ivIEklsEl~~VleeA~~lgv-kP~lGvR~RL~sqGsGkW~~SgG~ksKFGLsa~qvL~~v~~Lr-e~~~Ld~l~l 264 (652)
T COG1166 187 HKVYIVIEKLSELDLVLEEAKQLGV-KPRLGVRARLASQGSGKWQSSGGEKSKFGLSATQVLQVVERLR-EANLLDSLQL 264 (652)
T ss_pred CceEEEEechHHHHHHHHHHHHcCC-CCcceeEEEEecccccccccccCchhccCCCHHHHHHHHHHHH-hcchHHhhHH
Confidence 5788899999999999999999887 444444443 78889999999999999999887 543 3332
Q ss_pred EEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCC
Q 029062 122 SGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMA 156 (199)
Q Consensus 122 ~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~ 156 (199)
|+.|-+..- ...+..++.-.+++-+|++ .|..
T Consensus 265 --lHFHlGSQisnI~~ik~~~rEA~r~YvEL~k-lGa~ 299 (652)
T COG1166 265 --LHFHLGSQISNIRDIKTGVREAARFYVELRK-LGAN 299 (652)
T ss_pred --HhhhhcchhhhhHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 222333211 2345566666677777776 4765
No 63
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.91 E-value=14 Score=30.55 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=43.0
Q ss_pred EEeeCCCCC--CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecCccccCCCc
Q 029062 124 LMTIGMPDY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 124 Lmt~~~~~~--~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+||.-|... ......+++++++++.+.++ |+.. ...+=.|.+.+ .+...++|++.+=+||+||+..+
T Consensus 134 vMtV~PGfgGq~fi~~~lekI~~l~~~~~~~-~~~~-~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 134 LMSVNPGFGGQSFIPHTLDKLRAVRKMIDES-GRDI-RLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred EEEecCCCCCceecHhHHHHHHHHHHHHHhc-CCCe-eEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 688776532 23455667777777776654 5542 12345566543 33446899999999999998544
No 64
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=87.60 E-value=11 Score=33.08 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC--CCeeEEEE-E--------e------
Q 029062 64 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGL-M--------T------ 126 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~--~~L~l~GL-m--------t------ 126 (199)
+.+.+..+-+++++.- .++|++++-. +.+++.++++.+. +. ++|.+..= . +
T Consensus 145 ~~e~l~~l~~~vk~~~--~~Pv~vKl~P---------~~~di~~iA~~~~-~~g~Dgl~~~NT~~~~~~id~~~~~~~~~ 212 (310)
T COG0167 145 DPELLEKLLEAVKAAT--KVPVFVKLAP---------NITDIDEIAKAAE-EAGADGLIAINTTKSGMKIDLETKKPVLA 212 (310)
T ss_pred CHHHHHHHHHHHHhcc--cCceEEEeCC---------CHHHHHHHHHHHH-HcCCcEEEEEeeccccccccccccccccC
Confidence 3445555555555542 5788887643 4466777777776 54 44544431 1 0
Q ss_pred --eCCCCCCCh-HHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHH---HHcCCCEEecCccccCCCcc
Q 029062 127 --IGMPDYTST-PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 127 --~~~~~~~~~-~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a---~~~g~t~VR~Gs~ifgd~~~ 193 (199)
+++.+-... ....+.+++ +.++.+.. ++.+.+|+=.+++-| +.+|++.|++||++|...|.
T Consensus 213 ~~~GGLSG~~ikp~al~~v~~----l~~~~~~~--ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~ 279 (310)
T COG0167 213 NETGGLSGPPLKPIALRVVAE----LYKRLGGD--IPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPG 279 (310)
T ss_pred cCCCCcCcccchHHHHHHHHH----HHHhcCCC--CcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCch
Confidence 111111111 233444444 43333432 577888887888855 57899999999999987654
No 65
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=84.99 E-value=22 Score=29.80 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=46.8
Q ss_pred eeEEEEEeeCCCC--CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecCcc-ccCC
Q 029062 119 LEFSGLMTIGMPD--YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGST-IFGP 190 (199)
Q Consensus 119 L~l~GLmt~~~~~--~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~Gs~-ifgd 190 (199)
+...=+||.-|.- .......+++++++++.+.++ |+.. .-.+=.|.+.+ .....++|++.+=.||+ ||+.
T Consensus 131 vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~-~~~~-~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 131 LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERN-GLEY-LIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhc-CCCe-EEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCC
Confidence 3344479987752 233567888888888877664 6542 13556677644 33456899999999965 9983
No 66
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=81.11 E-value=30 Score=28.58 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=45.7
Q ss_pred CCeeEEEEEeeCCCC-C-CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH-HHHHcCCCEEecCccccCCCcc
Q 029062 117 PNLEFSGLMTIGMPD-Y-TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE-QAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 117 ~~L~l~GLmt~~~~~-~-~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~-~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
+++.+.=+||.-|.- . ....++..+ +++||++|+-. .-.+-.|.+++-- .+.++|++++=.||++|+..++
T Consensus 133 ~~~D~vLvMtVePGFGGQkFme~mm~K----V~~lR~kyp~l--~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~ 206 (224)
T KOG3111|consen 133 EHVDMVLVMTVEPGFGGQKFMEDMMPK----VEWLREKYPNL--DIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADP 206 (224)
T ss_pred ccccEEEEEEecCCCchhhhHHHHHHH----HHHHHHhCCCc--eEEecCCcCcchHHHHHHcCCCEEEecceeecCCCH
Confidence 356677789987652 1 122333333 45667665421 1346667666533 5568999999999999998765
Q ss_pred c
Q 029062 194 A 194 (199)
Q Consensus 194 ~ 194 (199)
.
T Consensus 207 ~ 207 (224)
T KOG3111|consen 207 S 207 (224)
T ss_pred H
Confidence 3
No 67
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.48 E-value=22 Score=30.64 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChH------HHHHHHH
Q 029062 70 HLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTP------ENFRTLL 143 (199)
Q Consensus 70 ~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~------~~f~~l~ 143 (199)
.+.+..+..|. .++|.++++... ....|.+++++.++++.+. +.. +.+ |-.+.+....... ..-....
T Consensus 197 ii~avr~~~g~-d~~i~vris~~~-~~~~g~~~~e~~~la~~l~-~~G-~d~--i~vs~g~~~~~~~~~~~~~~~~~~~~ 270 (327)
T cd02803 197 IVAAVREAVGP-DFPVGVRLSADD-FVPGGLTLEEAIEIAKALE-EAG-VDA--LHVSGGSYESPPPIIPPPYVPEGYFL 270 (327)
T ss_pred HHHHHHHHcCC-CceEEEEechhc-cCCCCCCHHHHHHHHHHHH-HcC-CCE--EEeCCCCCcccccccCCCCCCcchhH
Confidence 34444444555 678899988753 2346788889999999887 553 333 3222221111000 0001122
Q ss_pred HHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHc-CCCEEecCccccCCCccc
Q 029062 144 NCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEM-GSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 144 ~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~-g~t~VR~Gs~ifgd~~~~ 194 (199)
+....+++..++ +.+..|.-.+.. .+++. |++.|-+|+.++.+-...
T Consensus 271 ~~~~~ir~~~~i----PVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~ 321 (327)
T cd02803 271 ELAEKIKKAVKI----PVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLP 321 (327)
T ss_pred HHHHHHHHHCCC----CEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHH
Confidence 334445554333 444444444443 44666 789999999998875543
No 68
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=78.88 E-value=22 Score=28.05 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=57.5
Q ss_pred cEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChH
Q 029062 57 DMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTP 136 (199)
Q Consensus 57 ~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~ 136 (199)
.....++..+.+..+=+.+.+.+. +|++ .| -.++.+..+++.+...+|++++.|.. +++...++..
T Consensus 24 ~~~~r~~g~dl~~~ll~~~~~~~~---~v~l---lG-------~~~~~~~~~~~~l~~~yp~l~i~g~~-~g~~~~~~~~ 89 (171)
T cd06533 24 PLPERVTGSDLMPALLELAAQKGL---RVFL---LG-------AKPEVLEKAAERLRARYPGLKIVGYH-HGYFGPEEEE 89 (171)
T ss_pred CCCcccCcHHHHHHHHHHHHHcCC---eEEE---EC-------CCHHHHHHHHHHHHHHCCCcEEEEec-CCCCChhhHH
Confidence 466788889999888888877654 5666 24 36677788888887579999999842 3333222111
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH
Q 029062 137 ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE 171 (199)
Q Consensus 137 ~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~ 171 (199)
++.+.+++. +.+ +..+.||+ |--+
T Consensus 90 -------~i~~~I~~~-~pd--iv~vglG~-PkQE 113 (171)
T cd06533 90 -------EIIERINAS-GAD--ILFVGLGA-PKQE 113 (171)
T ss_pred -------HHHHHHHHc-CCC--EEEEECCC-CHHH
Confidence 155566653 433 45668876 5544
No 69
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=78.75 E-value=4.3 Score=32.09 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCCCccCCCh--hhHHHHHHHHHhcCCCeeEEEEE
Q 029062 84 KVLVQVNTSGEESKSGIDP--SSCLGIVEHVRLRCPNLEFSGLM 125 (199)
Q Consensus 84 ~VllqIntg~e~~R~Gv~~--~~~~~l~~~i~~~~~~L~l~GLm 125 (199)
.|+|-|||. +|||+.| +.+..|.+..+ -.++.+-|+=
T Consensus 26 kVlLIVNtA---SkCGfTpQYegLe~Ly~ky~--~~Gf~VLgFP 64 (162)
T COG0386 26 KVLLIVNTA---SKCGFTPQYEGLEALYKKYK--DKGFEVLGFP 64 (162)
T ss_pred cEEEEEEcc---cccCCcHhHHHHHHHHHHHh--hCCcEEEecc
Confidence 489999996 8999998 78888888776 3579988883
No 70
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=74.13 E-value=60 Score=28.33 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=52.0
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC--CCeeEEEEE-eeCC----C------CCCChHHHHHHHHHHHHH
Q 029062 82 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLM-TIGM----P------DYTSTPENFRTLLNCRAE 148 (199)
Q Consensus 82 ~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~--~~L~l~GLm-t~~~----~------~~~~~~~~f~~l~~~~~~ 148 (199)
.++|.+++... +..++..++++.+. +. .+|.+.+=. .... . ..+ -...+....+....
T Consensus 202 ~~Pv~vKl~~~-------~~~~~~~~ia~~l~-~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s-G~~~~~~~l~~v~~ 272 (327)
T cd04738 202 KVPLLVKIAPD-------LSDEELEDIADVAL-EHGVDGIIATNTTISRPGLLRSPLANETGGLS-GAPLKERSTEVLRE 272 (327)
T ss_pred CCCeEEEeCCC-------CCHHHHHHHHHHHH-HcCCcEEEEECCcccccccccccccCCCCccC-ChhhhHHHHHHHHH
Confidence 47899998532 33467778887775 43 334433210 0000 0 000 01111112233444
Q ss_pred HHHHhCCCCCCCEEEecCCcCHHHH---HHcCCCEEecCccccCCCc
Q 029062 149 VCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 149 l~~~~g~~~~~~~lS~Gms~d~~~a---~~~g~t~VR~Gs~ifgd~~ 192 (199)
+++..+.. ++.+..|+=.|++-+ +..|++.|.+|++++.+.|
T Consensus 273 l~~~~~~~--ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP 317 (327)
T cd04738 273 LYKLTGGK--IPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGP 317 (327)
T ss_pred HHHHhCCC--CcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCc
Confidence 54443212 456766665666633 5789999999999976543
No 71
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=73.52 E-value=8.7 Score=30.75 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=54.2
Q ss_pred EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHH
Q 029062 59 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPEN 138 (199)
Q Consensus 59 i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~ 138 (199)
..-+.-.+.+..+-+.+.+.+. +|++ .| -.|+.+.++++.++..+|++++.|. ++..++++.
T Consensus 28 ~~Rv~G~dl~~~l~~~~~~~~~---~vfl---lG-------~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f~~~~~--- 89 (177)
T TIGR00696 28 QSRVAGPDLMEELCQRAGKEKL---PIFL---YG-------GKPDVLQQLKVKLIKEYPKLKIVGA--FGPLEPEER--- 89 (177)
T ss_pred CCccChHHHHHHHHHHHHHcCC---eEEE---EC-------CCHHHHHHHHHHHHHHCCCCEEEEE--CCCCChHHH---
Confidence 3345567777777777766653 5666 24 3666777888888657999999995 555432211
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH
Q 029062 139 FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE 171 (199)
Q Consensus 139 f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~ 171 (199)
.++.+.+++. +.+ +..+.||+ |--+
T Consensus 90 ----~~i~~~I~~s-~~d--il~VglG~-PkQE 114 (177)
T TIGR00696 90 ----KAALAKIARS-GAG--IVFVGLGC-PKQE 114 (177)
T ss_pred ----HHHHHHHHHc-CCC--EEEEEcCC-cHhH
Confidence 2355666664 543 45667775 5433
No 72
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=73.41 E-value=7.4 Score=34.52 Aligned_cols=88 Identities=13% Similarity=0.205 Sum_probs=48.7
Q ss_pred CCceeeeecccchHHHHhHhccCCCccE---------EEecCcHHHHHHHHHHHHh---cCCC--CceEEEEEeCCCCCC
Q 029062 31 EDIKWHFVGHLQSNKAKTLLGGVPNLDM---------VEGVGNEKIANHLDKAVSN---LGRK--PLKVLVQVNTSGEES 96 (199)
Q Consensus 31 ~~i~~h~IG~lq~~ki~~l~~~~~~~~~---------i~sVDs~~~a~~l~~~a~~---~g~~--~i~VllqIntg~e~~ 96 (199)
..+.|+.+-.++.....-+.. ....+ -..-.+.+.+.++.+.-.+ .|+. .=.+|+++
T Consensus 67 PgV~wp~~aAi~ahD~~l~~s--GITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRc------- 137 (377)
T COG3454 67 PGVRWPPIAAILAHDAQLAAS--GITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRC------- 137 (377)
T ss_pred CCCCCCchHHHHHhhHHHHhc--ChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeee-------
Confidence 379999988888877764431 11111 1111122333333333222 2321 11344444
Q ss_pred ccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC
Q 029062 97 KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 130 (199)
Q Consensus 97 R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~ 130 (199)
=++..+..++.+... ..|.+++..||-|.|.
T Consensus 138 --Evs~~~~l~~~e~~~-~~p~v~LiSlMDH~PG 168 (377)
T COG3454 138 --EVSHPATLPLFEDLM-DHPRVKLISLMDHTPG 168 (377)
T ss_pred --ecCChhHHHHHHHHh-cCCCeeEEEecCCCCC
Confidence 445445666677777 7899999999999886
No 73
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.35 E-value=40 Score=29.72 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=53.6
Q ss_pred ceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-CC------------C--ChHHHHHHHHHHHH
Q 029062 83 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY------------T--STPENFRTLLNCRA 147 (199)
Q Consensus 83 i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~~------------~--~~~~~f~~l~~~~~ 147 (199)
++|++++..+ ++.+++.++++.+. +.. +.||-.+... +. . .-...+....+...
T Consensus 212 ~PV~vKlsp~-------~~~~~~~~ia~~l~-~~G---adgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~ 280 (344)
T PRK05286 212 VPLLVKIAPD-------LSDEELDDIADLAL-EHG---IDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIR 280 (344)
T ss_pred CceEEEeCCC-------CCHHHHHHHHHHHH-HhC---CcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHH
Confidence 6899998743 45567788888776 442 2344333321 00 0 00112222233444
Q ss_pred HHHHHhCCCCCCCEEEecCCcCHHHH---HHcCCCEEecCccccCCCc
Q 029062 148 EVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 148 ~l~~~~g~~~~~~~lS~Gms~d~~~a---~~~g~t~VR~Gs~ifgd~~ 192 (199)
.+++..+-. ++.+..|+=.+.+-+ +..|++.|.+|+.++.+.|
T Consensus 281 ~l~~~~~~~--ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP 326 (344)
T PRK05286 281 RLYKELGGR--LPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGP 326 (344)
T ss_pred HHHHHhCCC--CCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 555543212 456656655666633 5789999999999975433
No 74
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=72.40 E-value=28 Score=30.35 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=63.0
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHH
Q 029062 72 DKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAE 148 (199)
Q Consensus 72 ~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~ 148 (199)
.+..+..|. ...|.++++... ....|.+++++.++++.+. .. ++.+.-+.. ++.+.. ..... ......+.
T Consensus 212 ~aIR~~vG~-d~~v~vri~~~~-~~~~g~~~~e~~~ia~~Le-~~-gvd~iev~~-g~~~~~~~~~~~~~--~~~~~~~~ 284 (336)
T cd02932 212 DAVRAVWPE-DKPLFVRISATD-WVEGGWDLEDSVELAKALK-EL-GVDLIDVSS-GGNSPAQKIPVGPG--YQVPFAER 284 (336)
T ss_pred HHHHHHcCC-CceEEEEEcccc-cCCCCCCHHHHHHHHHHHH-Hc-CCCEEEECC-CCCCcccccCCCcc--ccHHHHHH
Confidence 333334564 567888888542 3456788899999999887 54 344332211 111100 11000 01233445
Q ss_pred HHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCccccc
Q 029062 149 VCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREYAKK 196 (199)
Q Consensus 149 l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~~~~ 196 (199)
+++... ++.+..|.-.+.. .+++.| ++.|..|+.++.|-....|
T Consensus 285 ir~~~~----iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 285 IRQEAG----IPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred HHhhCC----CCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 555433 3445555544433 446777 7999999999998655443
No 75
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=70.26 E-value=53 Score=29.75 Aligned_cols=109 Identities=15% Similarity=0.237 Sum_probs=59.4
Q ss_pred EEEecCcHHHHHHHHHHHHhcCCCCceEEE-EEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEe-eCCCCCCCh
Q 029062 58 MVEGVGNEKIANHLDKAVSNLGRKPLKVLV-QVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT-IGMPDYTST 135 (199)
Q Consensus 58 ~i~sVDs~~~a~~l~~~a~~~g~~~i~Vll-qIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt-~~~~~~~~~ 135 (199)
.+|.....+.+.+.-+.+++.|. .+.+ -+|+ ++..+.++.+. .++.+..+|+ +.+.. .
T Consensus 255 TVH~ea~~~ti~~ai~~akk~Gi---kvgVD~lnp-----------~tp~e~i~~l~---~~vD~Vllht~vdp~~---~ 314 (391)
T PRK13307 255 VISGLAPISTIEKAIHEAQKTGI---YSILDMLNV-----------EDPVKLLESLK---VKPDVVELHRGIDEEG---T 314 (391)
T ss_pred EEeccCCHHHHHHHHHHHHHcCC---EEEEEEcCC-----------CCHHHHHHHhh---CCCCEEEEccccCCCc---c
Confidence 44555555556666666666664 2333 1222 12233444443 2466777886 54431 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCH-HHHHHcCCCEEecCccccCCCc
Q 029062 136 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF-EQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 136 ~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~-~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
...++++.+ +++. +... ...++.|.+..- +.+.+.|++.+=+|++||+..+
T Consensus 315 ~~~~~kI~~----ikk~-~~~~-~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~D 366 (391)
T PRK13307 315 EHAWGNIKE----IKKA-GGKI-LVAVAGGVRVENVEEALKAGADILVVGRAITKSKD 366 (391)
T ss_pred cchHHHHHH----HHHh-CCCC-cEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 224444443 3332 2221 246688887553 3556899999999999998654
No 76
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=70.02 E-value=29 Score=30.61 Aligned_cols=115 Identities=10% Similarity=0.106 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCC--CeeEEEEEeeCCCCCC---ChHHHHHHHHH
Q 029062 70 HLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP--NLEFSGLMTIGMPDYT---STPENFRTLLN 144 (199)
Q Consensus 70 ~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~--~L~l~GLmt~~~~~~~---~~~~~f~~l~~ 144 (199)
.+.+..+..|. ...|.++++.- +....|.+++++.++++.+. ... -|.+.+ ..|...... .... ..+..
T Consensus 193 iv~aIR~~vG~-d~~v~iRi~~~-D~~~~g~~~~e~~~i~~~Le-~~G~d~i~vs~-g~~e~~~~~~~~~~~~--~~~~~ 266 (353)
T cd02930 193 IVRAVRAAVGE-DFIIIYRLSML-DLVEGGSTWEEVVALAKALE-AAGADILNTGI-GWHEARVPTIATSVPR--GAFAW 266 (353)
T ss_pred HHHHHHHHcCC-CceEEEEeccc-ccCCCCCCHHHHHHHHHHHH-HcCCCEEEeCC-CcCCCCCccccccCCc--hhhHH
Confidence 34444445576 77889998854 24566888899999999887 542 333311 112111000 0000 01233
Q ss_pred HHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCccc
Q 029062 145 CRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREYA 194 (199)
Q Consensus 145 ~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~~ 194 (199)
+.+.+++..++ +.+..|.-.+.. .+++.| .+.|..|..++.|-...
T Consensus 267 ~~~~ik~~v~i----PVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~ 316 (353)
T cd02930 267 ATAKLKRAVDI----PVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFV 316 (353)
T ss_pred HHHHHHHhCCC----CEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHH
Confidence 44556655333 455555544433 446666 79999999999876543
No 77
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=69.73 E-value=57 Score=26.28 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=65.6
Q ss_pred ceeeeecccchHHHHhHhccCCCccE-EEecCc-HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh--hhHHHH
Q 029062 33 IKWHFVGHLQSNKAKTLLGGVPNLDM-VEGVGN-EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP--SSCLGI 108 (199)
Q Consensus 33 i~~h~IG~lq~~ki~~l~~~~~~~~~-i~sVDs-~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~--~~~~~l 108 (199)
+..|-|+.--..-++.+++. .+++ .+.... ...+..+-+.+.+.|. .+.+.+|.+ +..+..+ +.+..+
T Consensus 60 ~k~~di~~~~~~~~~~~~~~--gad~vtvh~e~g~~~l~~~i~~~~~~g~---~~~v~~~~~---~~~~~~~~~~~~~~v 131 (215)
T PRK13813 60 LKVADIPNTNRLICEAVFEA--GAWGIIVHGFTGRDSLKAVVEAAAESGG---KVFVVVEMS---HPGALEFIQPHADKL 131 (215)
T ss_pred eeccccHHHHHHHHHHHHhC--CCCEEEEcCcCCHHHHHHHHHHHHhcCC---eEEEEEeCC---CCCCCCCHHHHHHHH
Confidence 44444554322223445542 2342 222332 3446666666777775 566667765 2333332 333333
Q ss_pred HHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC---HHHHHHcCCCEEecCc
Q 029062 109 VEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD---FEQAIEMGSTSVRIGS 185 (199)
Q Consensus 109 ~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d---~~~a~~~g~t~VR~Gs 185 (199)
+.... -|+ +.|.-.. +.. .++++++.+.. +.. +..+..|.+.. ...+.+.|++.+=+|+
T Consensus 132 ~~m~~--e~G--~~g~~~~-~~~-------~~~i~~l~~~~----~~~--~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr 193 (215)
T PRK13813 132 AKLAQ--EAG--AFGVVAP-ATR-------PERVRYIRSRL----GDE--LKIISPGIGAQGGKAADAIKAGADYVIVGR 193 (215)
T ss_pred HHHHH--HhC--CCeEEEC-CCc-------chhHHHHHHhc----CCC--cEEEeCCcCCCCCCHHHHHHcCCCEEEECc
Confidence 33332 243 3455322 111 22222222221 211 23355565543 6677889999999999
Q ss_pred cccCCCc
Q 029062 186 TIFGPRE 192 (199)
Q Consensus 186 ~ifgd~~ 192 (199)
+||...+
T Consensus 194 ~I~~~~d 200 (215)
T PRK13813 194 SIYNAAD 200 (215)
T ss_pred ccCCCCC
Confidence 9998544
No 78
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=68.52 E-value=51 Score=29.77 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHH---HHcCCCEEecCccccCCCc
Q 029062 139 FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 139 f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a---~~~g~t~VR~Gs~ifgd~~ 192 (199)
.+.+.++...+...++. .++.+..|+=.+++-| +..|++.|++||++|.+.+
T Consensus 253 l~~v~~i~~~~~~~~~~--~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp 307 (385)
T PLN02495 253 LAKVMAIAKMMKSEFPE--DRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGY 307 (385)
T ss_pred HHHHHHHHHHHhhhccC--CCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCc
Confidence 34445555555432221 1456766666676644 5789999999999997643
No 79
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=67.81 E-value=54 Score=27.10 Aligned_cols=137 Identities=12% Similarity=0.148 Sum_probs=67.5
Q ss_pred ceeeeecccchHHHHhHhccCCCccE--EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHH
Q 029062 33 IKWHFVGHLQSNKAKTLLGGVPNLDM--VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVE 110 (199)
Q Consensus 33 i~~h~IG~lq~~ki~~l~~~~~~~~~--i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~ 110 (199)
+..|+.-.--.+.++.+++. .+++ +|.--....+.+.-+.+++.|. .+-|-+|++ .+.+++..++
T Consensus 68 lDvHLm~~~p~~~i~~~~~~--Gad~itvH~ea~~~~~~~~l~~ik~~G~---~~gval~p~-------t~~e~l~~~l- 134 (228)
T PTZ00170 68 LDCHLMVSNPEKWVDDFAKA--GASQFTFHIEATEDDPKAVARKIREAGM---KVGVAIKPK-------TPVEVLFPLI- 134 (228)
T ss_pred EEEEECCCCHHHHHHHHHHc--CCCEEEEeccCCchHHHHHHHHHHHCCC---eEEEEECCC-------CCHHHHHHHH-
Confidence 55566533333445555532 2443 2322232224444455555664 344566654 2344444332
Q ss_pred HHHhcCCCeeEEEEEeeCCC-CCCC-hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH-HHHHcCCCEEecCccc
Q 029062 111 HVRLRCPNLEFSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE-QAIEMGSTSVRIGSTI 187 (199)
Q Consensus 111 ~i~~~~~~L~l~GLmt~~~~-~~~~-~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~-~a~~~g~t~VR~Gs~i 187 (199)
..+.+...=+|+.-+. +... ....+.++.++++.+. .. ...+-.|.+..-. .+.+.|++.+=+|++|
T Consensus 135 ----~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~---~~---~I~VdGGI~~~ti~~~~~aGad~iVvGsaI 204 (228)
T PTZ00170 135 ----DTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP---HL---NIQVDGGINLETIDIAADAGANVIVAGSSI 204 (228)
T ss_pred ----ccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc---cC---eEEECCCCCHHHHHHHHHcCCCEEEEchHH
Confidence 2222222225776544 2222 2344555555433221 11 1345667775533 5578999999999999
Q ss_pred cCCCc
Q 029062 188 FGPRE 192 (199)
Q Consensus 188 fgd~~ 192 (199)
|+..+
T Consensus 205 ~~a~d 209 (228)
T PTZ00170 205 FKAKD 209 (228)
T ss_pred hCCCC
Confidence 98544
No 80
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=66.03 E-value=30 Score=27.92 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=43.9
Q ss_pred cCCcHHHHHHhh-cCCCCceeeeec-ccchHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFVG-HLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~IG-~lq~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+|++.+.++. .+...+.+..+. .+....+..++ ..++++ .++|+.+.-..+++.|.+.++
T Consensus 73 G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~---~~~D~Vi~~~d~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 73 GRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLI---NNVDLVLDCTDNFATRYLINDACVALGT 137 (202)
T ss_pred CChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 678899888888 665556665553 33334455555 446654 578999999999999999876
No 81
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=64.95 E-value=96 Score=27.28 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHH-hcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC---eeEEEEEeeCC------CCCCC
Q 029062 65 EKIANHLDKAVS-NLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN---LEFSGLMTIGM------PDYTS 134 (199)
Q Consensus 65 ~~~a~~l~~~a~-~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~---L~l~GLmt~~~------~~~~~ 134 (199)
.+.+..+-++.+ ..|. ++.|-++++... ....|.++++..++++.+. +... |.+.+=.+... .....
T Consensus 191 ~r~~~eiv~~ir~~vg~-~~~v~iRl~~~~-~~~~G~~~~e~~~~~~~l~-~~G~vd~i~vs~g~~~~~~~~~~~~~~~~ 267 (343)
T cd04734 191 MRFLLEVLAAVRAAVGP-DFIVGIRISGDE-DTEGGLSPDEALEIAARLA-AEGLIDYVNVSAGSYYTLLGLAHVVPSMG 267 (343)
T ss_pred hHHHHHHHHHHHHHcCC-CCeEEEEeehhh-ccCCCCCHHHHHHHHHHHH-hcCCCCEEEeCCCCCCcccccccccCCCC
Confidence 344444444443 4465 778888888653 3467899999999999997 6543 33321111110 00000
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCccc
Q 029062 135 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREYA 194 (199)
Q Consensus 135 ~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~~ 194 (199)
.... ...++.+.+++..++ +.+..|.-.|.+ .+++.| .++|-+|..+..+-...
T Consensus 268 ~~~~--~~~~~~~~ik~~~~i----pvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~ 325 (343)
T cd04734 268 MPPG--PFLPLAARIKQAVDL----PVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLV 325 (343)
T ss_pred CCcc--hhHHHHHHHHHHcCC----CEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHH
Confidence 0111 113344445554333 344445434433 445655 89999999999876543
No 82
>PLN02334 ribulose-phosphate 3-epimerase
Probab=64.02 E-value=80 Score=25.87 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=40.3
Q ss_pred eeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH-HHHHcCCCEEecCccccCCCc
Q 029062 119 LEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE-QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 119 L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~-~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+.+.++|++.+.... .....++.++++++.+. +.+ ..+-.|.|.+-- ...+.|++.|=+||+||+..+
T Consensus 140 ~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~---~~~---I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~~d 210 (229)
T PLN02334 140 VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP---ELD---IEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPD 210 (229)
T ss_pred CCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC---CCc---EEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCC
Confidence 678889988765322 22344455544332211 111 234557765533 445889999999999998543
No 83
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=64.00 E-value=1e+02 Score=27.67 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=57.6
Q ss_pred cCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHH
Q 029062 62 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRT 141 (199)
Q Consensus 62 VDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~ 141 (199)
||=..+++.+++.++-.|. -+..||+ | ++--+.-| -+.++++.++ ..||+.+..++|++..-.
T Consensus 141 Vd~eyLl~w~~kVa~~Kgk-glEaHlD---G--qGEP~lYP-~l~~lVqalk-~~~~v~vVSmQTng~~L~--------- 203 (414)
T COG2100 141 VDPEYLLEWFEKVARFKGK-GLEAHLD---G--QGEPLLYP-HLVDLVQALK-EHKGVEVVSMQTNGVLLS--------- 203 (414)
T ss_pred ecHHHHHHHHHHHHhhhCC-CeEEEec---C--CCCCccch-hHHHHHHHHh-cCCCceEEEEeeCceecc---------
Confidence 5667788999999988887 7777774 3 22333333 5788999998 999999999999986521
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEe
Q 029062 142 LLNCRAEVCKALGMAEDQCELSM 164 (199)
Q Consensus 142 l~~~~~~l~~~~g~~~~~~~lS~ 164 (199)
.++.++|.++ |++. -.||.
T Consensus 204 -~~lv~eLeeA-GLdR--iNlSv 222 (414)
T COG2100 204 -KKLVDELEEA-GLDR--INLSV 222 (414)
T ss_pred -HHHHHHHHHh-CCce--EEeec
Confidence 2345566664 7763 44565
No 84
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=62.24 E-value=34 Score=28.55 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=44.1
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.++++.+.++. .+...+....+ ..+....+..++ +.+++++ +.|+.+.-..+++.|.+.++
T Consensus 76 G~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~---~~~DlVvd~~D~~~~r~~ln~~~~~~~i 140 (240)
T TIGR02355 76 GQPKVESAKDALTQINPHIAINPINAKLDDAELAALI---AEHDIVVDCTDNVEVRNQLNRQCFAAKV 140 (240)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh---hcCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 778899888888 66444444443 344444566666 4577665 78999999999999999876
No 85
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.50 E-value=1.3e+02 Score=26.32 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=64.4
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC--------C-C--hHHHHH
Q 029062 72 DKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY--------T-S--TPENFR 140 (199)
Q Consensus 72 ~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~--------~-~--~~~~f~ 140 (199)
.+..+..|. .+.|.+++|.. +..+.|.+++++.++++.+. +.. +.+. -.+++... . . ....
T Consensus 207 ~aIR~avG~-d~~v~vris~~-~~~~~g~~~eea~~ia~~Le-~~G-vd~i--ev~~g~~~~~~~~~~~~~~~~~~~~-- 278 (338)
T cd04733 207 DAIRAAVGP-GFPVGIKLNSA-DFQRGGFTEEDALEVVEALE-EAG-VDLV--ELSGGTYESPAMAGAKKESTIAREA-- 278 (338)
T ss_pred HHHHHHcCC-CCeEEEEEcHH-HcCCCCCCHHHHHHHHHHHH-HcC-CCEE--EecCCCCCCccccccccCCccccch--
Confidence 333334464 67899999853 34577899999999999887 542 3332 11221100 0 0 0010
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCccccc
Q 029062 141 TLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREYAKK 196 (199)
Q Consensus 141 ~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~~~~ 196 (199)
...++.+.++++.++ +.+..|.-.|.. .+++.| ++.|=.|..+..|.....|
T Consensus 279 ~~~~~~~~ik~~v~i----PVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k 334 (338)
T cd04733 279 YFLEFAEKIRKVTKT----PLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNK 334 (338)
T ss_pred hhHHHHHHHHHHcCC----CEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHH
Confidence 123445556665443 334334434433 446766 7999999999988766543
No 86
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=57.76 E-value=42 Score=28.09 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=43.2
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.++++.+.++. .+...+....+ ..+....+..++ +.++++ .+.|+.+.-..+++.|.+.++
T Consensus 84 G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~---~~~DiVi~~~D~~~~r~~ln~~~~~~~i 148 (245)
T PRK05690 84 GQPKVESARAALARINPHIAIETINARLDDDELAALI---AGHDLVLDCTDNVATRNQLNRACFAAKK 148 (245)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH---hcCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 778898888887 66444444333 344445555566 446654 589999998889999999876
No 87
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=57.46 E-value=56 Score=24.40 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=41.2
Q ss_pred cCCcHHHHHHhh-cCCCCceeeeec-ccchHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFVG-HLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~IG-~lq~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+|++.+.++. .+...+.+..+- .+......... ..++++ .+.|+.+.-..+++.|.+.+.
T Consensus 51 G~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~~~~~---~~~diVi~~~d~~~~~~~l~~~~~~~~i 115 (143)
T cd01483 51 GKPKAEVAARRLNELNPGVNVTAVPEGISEDNLDDFL---DGVDLVIDAIDNIAVRRALNRACKELGI 115 (143)
T ss_pred CChHHHHHHHHHHHHCCCcEEEEEeeecChhhHHHHh---cCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 778888888887 664455555442 22222223344 346654 578999999999999999876
No 88
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=56.27 E-value=1e+02 Score=24.52 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=24.0
Q ss_pred EEEecCCcC-HHHHHHcCCCEEecCccccCCCc
Q 029062 161 ELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 161 ~lS~Gms~d-~~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
.++.|.+.+ .....+.|++-+=+|++||...+
T Consensus 162 ~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 162 AVAGGINLDTIPDVIKLGPDIVIVGGAITKAAD 194 (206)
T ss_pred EEECCcCHHHHHHHHHcCCCEEEEeehhcCCCC
Confidence 347788764 33456889999999999998544
No 89
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=55.55 E-value=85 Score=27.96 Aligned_cols=114 Identities=9% Similarity=-0.046 Sum_probs=59.1
Q ss_pred HHHHhcCCCCceEEEEEeCCCCCCcc-CCChhhHHHHHHHHHhcC-CCeeEEEEEee-CCCCCCChHHHHHHHHHHHHHH
Q 029062 73 KAVSNLGRKPLKVLVQVNTSGEESKS-GIDPSSCLGIVEHVRLRC-PNLEFSGLMTI-GMPDYTSTPENFRTLLNCRAEV 149 (199)
Q Consensus 73 ~~a~~~g~~~i~VllqIntg~e~~R~-Gv~~~~~~~l~~~i~~~~-~~L~l~GLmt~-~~~~~~~~~~~f~~l~~~~~~l 149 (199)
+..+..|. ...|.++++........ |..+++..++++.+. +. +-+.+.+=+.. .+.........+ ...+.+.+
T Consensus 209 aIr~~vg~-~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~-~~~D~i~vs~g~~~~~~~~~~~~~~~~--~~~~~~~i 284 (370)
T cd02929 209 DTKDAVGD-DCAVATRFSVDELIGPGGIESEGEGVEFVEMLD-ELPDLWDVNVGDWANDGEDSRFYPEGH--QEPYIKFV 284 (370)
T ss_pred HHHHHcCC-CceEEEEecHHHhcCCCCCCCHHHHHHHHHHHH-hhCCEEEecCCCccccccccccCCccc--cHHHHHHH
Confidence 33334565 77888998854222222 356788888888886 53 21222110000 000000001111 23444556
Q ss_pred HHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCccc
Q 029062 150 CKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREYA 194 (199)
Q Consensus 150 ~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~~ 194 (199)
++..+. +.+..|.-.|.+ .+++.| ++.|-.|..+..|-...
T Consensus 285 k~~~~~----pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~ 329 (370)
T cd02929 285 KQVTSK----PVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLP 329 (370)
T ss_pred HHHCCC----CEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHH
Confidence 654333 445445545544 446666 79999999999986654
No 90
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.81 E-value=78 Score=27.90 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=55.6
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC-hHHHHHHHHHHHHHHHHHhCCCCCCC
Q 029062 82 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS-TPENFRTLLNCRAEVCKALGMAEDQC 160 (199)
Q Consensus 82 ~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~-~~~~f~~l~~~~~~l~~~~g~~~~~~ 160 (199)
...|-++++... .-..|..+++..++++.+. +. ++.+..+.......... .... .....+.+++..+.. ++
T Consensus 215 ~~~v~~R~s~~~-~~~~g~~~ee~~~i~~~L~-~~-GvD~I~Vs~g~~~~~~~~~~~~---~~~~~~~ik~~~~~~--iP 286 (353)
T cd04735 215 DFILGYRFSPEE-PEEPGIRMEDTLALVDKLA-DK-GLDYLHISLWDFDRKSRRGRDD---NQTIMELVKERIAGR--LP 286 (353)
T ss_pred CceEEEEECccc-ccCCCCCHHHHHHHHHHHH-Hc-CCCEEEeccCccccccccCCcc---hHHHHHHHHHHhCCC--CC
Confidence 677888888643 3356888999999999887 65 34444332111111000 0000 112223333332111 23
Q ss_pred EEEecCCcCHH---HHHHcCCCEEecCccccCCCcc
Q 029062 161 ELSMGMSGDFE---QAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 161 ~lS~Gms~d~~---~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
.+..|.-.|.+ .+++.|++.|-.|..+..|-..
T Consensus 287 Vi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl 322 (353)
T cd04735 287 LIAVGSINTPDDALEALETGADLVAIGRGLLVDPDW 322 (353)
T ss_pred EEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccH
Confidence 44334323333 4466799999999999887543
No 91
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=53.30 E-value=1.5e+02 Score=25.48 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCC-CeeEEEEEe---e------CC--CC
Q 029062 64 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP-NLEFSGLMT---I------GM--PD 131 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~-~L~l~GLmt---~------~~--~~ 131 (199)
+++.+..+-+..++. . .++|++++-.+ ++.++..++++.+. +.. + +.||-. . .. ..
T Consensus 141 ~~~~~~~i~~~v~~~-~-~iPv~vKl~p~-------~~~~~~~~~a~~l~-~~~~G--~~gi~~~Nt~~~~~~id~~~~~ 208 (294)
T cd04741 141 DFDATLEYLTAVKAA-Y-SIPVGVKTPPY-------TDPAQFDTLAEALN-AFACP--ISFITATNTLGNGLVLDPERET 208 (294)
T ss_pred CHHHHHHHHHHHHHh-c-CCCEEEEeCCC-------CCHHHHHHHHHHHh-ccccC--CcEEEEEccCCccccccCCCCC
Confidence 466666666666554 2 57899887543 35556677777665 441 2 222221 1 10 00
Q ss_pred -----CC-----ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHH---HHcCCCEEecCccccC
Q 029062 132 -----YT-----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGSTIFG 189 (199)
Q Consensus 132 -----~~-----~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a---~~~g~t~VR~Gs~ifg 189 (199)
.. .-........+.+..+++..+.. ++.+..|.=.+++-+ +..|++.|.+||+++.
T Consensus 209 ~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~--ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 209 VVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSE--IQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred cccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCC--CCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 00 00111112223334444443211 456766655666633 5789999999999986
No 92
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=52.86 E-value=67 Score=28.78 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=59.5
Q ss_pred EEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC---CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEe----eCCC
Q 029062 58 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS---GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT----IGMP 130 (199)
Q Consensus 58 ~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg---~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt----~~~~ 130 (199)
=|.||.|.--+..=+........ .-+||||-.+. ..-+=+|+.|.+...++..|. .--++-..-|+- .+|.
T Consensus 18 GI~SVCSAHPlViEAAl~~a~~~-~~~vLIEAT~NQVnq~GGYTGMTP~DFr~fV~aiA-~~~gfp~e~liLGGDHLGPN 95 (426)
T COG4573 18 GIYSVCSAHPLVIEAALRFARAS-QTPVLIEATSNQVNQFGGYTGMTPADFRGFVFAIA-DKLGFPRERLILGGDHLGPN 95 (426)
T ss_pred CceeeccccHHHHHHHHHHHhcc-CCceEeecccccccccCCcCCCChHHHHHHHHHHH-HHhCCcHHHHhccCCcCCCC
Confidence 35666665443222222222222 45799975321 112457899999999999987 433433333332 2222
Q ss_pred C--CCChHHHHHHHHHHHHHHHHHhCCCCCCCEE--EecCCcC
Q 029062 131 D--YTSTPENFRTLLNCRAEVCKALGMAEDQCEL--SMGMSGD 169 (199)
Q Consensus 131 ~--~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~l--S~Gms~d 169 (199)
- ..+..+...+-.++++..-++ |+.. .|| |||--+|
T Consensus 96 ~Wq~~pA~eAM~ka~~mv~AYv~A-GF~K--IHLDaSM~CA~d 135 (426)
T COG4573 96 PWQHLPAAEAMAKADDLVKAYVAA-GFTK--IHLDASMSCAGD 135 (426)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHc-Ccee--eecccccccCCC
Confidence 1 234566777777777776665 8763 444 8886655
No 93
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=51.65 E-value=58 Score=26.25 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=41.3
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhcCCCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGRKP 82 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~g~~~ 82 (199)
+.+|++-+.++. .+..++....+ ..+. ....... ..+++++ +.|+.+....+++.|.+.+. |
T Consensus 73 G~~Ka~a~~~~L~~lNp~v~i~~~~~~~~-~~~~~~~---~~~dvVi~~~~~~~~~~~ln~~c~~~~i-p 137 (197)
T cd01492 73 GQNRAEASLERLRALNPRVKVSVDTDDIS-EKPEEFF---SQFDVVVATELSRAELVKINELCRKLGV-K 137 (197)
T ss_pred CchHHHHHHHHHHHHCCCCEEEEEecCcc-ccHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC-C
Confidence 677888887777 66444555443 2222 2233444 4467655 67899999999999999886 5
No 94
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=51.32 E-value=1.3e+02 Score=24.36 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=72.5
Q ss_pred CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC-CCccCCCh-hhHHHHH
Q 029062 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE-ESKSGIDP-SSCLGIV 109 (199)
Q Consensus 32 ~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e-~~R~Gv~~-~~~~~l~ 109 (199)
+.+.|-||..-..-++.+.+.....-.+|..-..+.++.+-+.+.+.|+ .+++-+.++.. ..-.+... +.+..++
T Consensus 55 D~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~---~v~~v~~lss~~~~~~~~~~~~~v~~~a 131 (213)
T TIGR01740 55 DLKFADIPNTVKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEGGR---GLLAVTELTSMGSLDYGEDTMEKVLEYA 131 (213)
T ss_pred EEeecchHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCC---eEEEEEcCCCCChhhhCcCHHHHHHHHH
Confidence 5778889886555555555432223345666677777777777766654 46666654421 11123333 3344444
Q ss_pred HHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC------------HHHHHHcC
Q 029062 110 EHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD------------FEQAIEMG 177 (199)
Q Consensus 110 ~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d------------~~~a~~~g 177 (199)
+... .. + +.|+-|. .+..+.. ++..| . ...++-|.... ...+.+.|
T Consensus 132 ~~~~-~~-g--~~g~v~~--------~~~~~~i-------r~~~~-~--~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~G 189 (213)
T TIGR01740 132 KEAK-AF-G--LDGPVCS--------AEEAKEI-------RKFTG-D--FLILTPGIRLQSKGADDQQRVVTLEDAKEAG 189 (213)
T ss_pred HHhh-hc-C--CeEEEeC--------HHHHHHH-------HHhcC-C--ceEEeCCcCCCCCCcCCccccCCHHHHHHcC
Confidence 4443 22 1 2344322 1112212 22223 2 23444443211 24567899
Q ss_pred CCEEecCccccCCCcc
Q 029062 178 STSVRIGSTIFGPREY 193 (199)
Q Consensus 178 ~t~VR~Gs~ifgd~~~ 193 (199)
++.+=+|++||+..++
T Consensus 190 ad~iVvGr~I~~~~d~ 205 (213)
T TIGR01740 190 ADVIIVGRGIYAAEDP 205 (213)
T ss_pred CCEEEEChhhcCCCCH
Confidence 9999999999985543
No 95
>PLN02826 dihydroorotate dehydrogenase
Probab=51.01 E-value=2e+02 Score=26.26 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=24.8
Q ss_pred CCEEEecCCcCHH---HHHHcCCCEEecCccccCCCc
Q 029062 159 QCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 159 ~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
++.+..|+=.+.+ ..+..|++.|++||+++...+
T Consensus 342 ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp 378 (409)
T PLN02826 342 IPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGP 378 (409)
T ss_pred CcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCH
Confidence 4667666656655 336899999999999876543
No 96
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=50.00 E-value=74 Score=26.05 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=42.2
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+|++.+.++. .+...+.+..+ ..+....+..+. ..++++ .++|+.+.-..+++.|.+.+.
T Consensus 73 G~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~---~~~DvVi~~~d~~~~r~~l~~~~~~~~i 137 (228)
T cd00757 73 GQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELI---AGYDLVLDCTDNFATRYLINDACVKLGK 137 (228)
T ss_pred CChHHHHHHHHHHHhCCCCEEEEecceeCHHHHHHHH---hCCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 778888888887 66444444433 223234555565 446655 578999999999999999876
No 97
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=49.60 E-value=70 Score=26.11 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=42.5
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhc-CC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNL-GR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~-g~ 80 (199)
+.+|++.+.++. .+...+.+..+ ..+....+..+. +.+++++ ++|+.+.-..+.+.|.+. +.
T Consensus 79 G~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~---~~~DvVI~a~D~~~~r~~l~~~~~~~~~~ 144 (212)
T PRK08644 79 GMPKVEALKENLLEINPFVEIEAHNEKIDEDNIEELF---KDCDIVVEAFDNAETKAMLVETVLEHPGK 144 (212)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEEeeecCHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 678888887777 66444555443 344445555566 4578777 679999888899998887 64
No 98
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=47.89 E-value=57 Score=21.78 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=42.6
Q ss_pred cEEEecCcHHHHHHHHHHHHhcCCCCc---eEEEEEeCCCCCCccCCC----hhhHHHHHHHHHhcCCCeeEEEEEee
Q 029062 57 DMVEGVGNEKIANHLDKAVSNLGRKPL---KVLVQVNTSGEESKSGID----PSSCLGIVEHVRLRCPNLEFSGLMTI 127 (199)
Q Consensus 57 ~~i~sVDs~~~a~~l~~~a~~~g~~~i---~VllqIntg~e~~R~Gv~----~~~~~~l~~~i~~~~~~L~l~GLmt~ 127 (199)
..+++.+|...+-+..+.+++.|. +. ++-=+|..| ||+. +++...+.+.+. -.++.+.|++..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi-~~~liP~P~~i~~~-----CG~al~~~~~d~~~i~~~l~--~~~i~~~~iy~~ 72 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI-PVRLIPTPREISAG-----CGLALRFEPEDLEKIKEILE--ENGIEYEGIYEI 72 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC-cEEEeCCChhccCC-----CCEEEEEChhhHHHHHHHHH--HCCCCeeEEEEe
Confidence 467889999999999999999875 32 222233322 6763 456566555555 457999998753
No 99
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=47.87 E-value=2.1e+02 Score=25.65 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHH-hcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCC--CC-ChHHHH
Q 029062 64 NEKIANHLDKAVS-NLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD--YT-STPENF 139 (199)
Q Consensus 64 s~~~a~~l~~~a~-~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~--~~-~~~~~f 139 (199)
+.+.+.++-++.+ ..|. ...|.++++..+-....|.++++..++++.+. +..-+.+.-+ ..+.. .. ......
T Consensus 198 R~Rf~~EVv~aVr~~vg~-~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~-~~G~~d~i~v--s~~~~~~~~~~~~~~~ 273 (363)
T COG1902 198 RARFLLEVVDAVREAVGA-DFPVGVRLSPDDFFDGGGLTIEEAVELAKALE-EAGLVDYIHV--SEGGYERGGTITVSGP 273 (363)
T ss_pred HHHHHHHHHHHHHHHhCC-CceEEEEECccccCCCCCCCHHHHHHHHHHHH-hcCCccEEEe--ecccccCCCCcccccc
Confidence 3444544444443 3454 55799999875322556889999999999998 6432333222 22111 00 000001
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHH---HHcC-CCEEecCccccCCCcc
Q 029062 140 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMG-STSVRIGSTIFGPREY 193 (199)
Q Consensus 140 ~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a---~~~g-~t~VR~Gs~ifgd~~~ 193 (199)
..+..+...++..... +.+-.|+=.|...| ++.| +|+|-.|....-|-..
T Consensus 274 ~~~~~~a~~i~~~~~~----pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~ 327 (363)
T COG1902 274 GYQVEFAARIKKAVRI----PVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDL 327 (363)
T ss_pred chhHHHHHHHHHhcCC----CEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccH
Confidence 2233344445443232 34444543444433 5776 8999999988876554
No 100
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=47.20 E-value=62 Score=25.42 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=41.2
Q ss_pred cEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEE
Q 029062 57 DMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 125 (199)
Q Consensus 57 ~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLm 125 (199)
.+...++..+.+..+-+.+.+.+. +|++ .| =+++.+.++++.+...+|++++.|.+
T Consensus 26 ~~~~rv~g~dl~~~l~~~~~~~~~---~ifl---lG-------~~~~~~~~~~~~l~~~yP~l~ivg~~ 81 (172)
T PF03808_consen 26 PLPERVTGSDLFPDLLRRAEQRGK---RIFL---LG-------GSEEVLEKAAANLRRRYPGLRIVGYH 81 (172)
T ss_pred CCCcccCHHHHHHHHHHHHHHcCC---eEEE---Ee-------CCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 445778888888888887777654 5666 34 35667777888887579999998875
No 101
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=46.98 E-value=86 Score=25.24 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=41.4
Q ss_pred cCCcHHHHHHhh-cCCCCceeeeecc-cc--hHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFVGH-LQ--SNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~IG~-lq--~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+|++.+.++. .+..++.+..+-. +. .+....+. +.++++ .+.|+.+....+++.|.+.+.
T Consensus 73 G~~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~---~~~dvVi~~~d~~~~~~~ln~~c~~~~i 139 (198)
T cd01485 73 GMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYL---QKFTLVIATEENYERTAKVNDVCRKHHI 139 (198)
T ss_pred CchHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 778888888877 6655566655532 21 23444455 446654 456788888999999999875
No 102
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=45.82 E-value=42 Score=21.86 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 029062 64 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 113 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~ 113 (199)
+.+.+..|++.+++.|. -.+++-+.....=.|++++++.++.+.+.
T Consensus 22 ~~~~l~~la~ia~~yg~----~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 22 SAEQLRALAEIAEKYGD----GEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp EHHHHHHHHHHHHHHST----SEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC----CeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 55677777777777663 34444444333335667777777777665
No 103
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=45.18 E-value=1.9e+02 Score=27.44 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=43.4
Q ss_pred EecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCC------CeeEEEEE--eeCCCC
Q 029062 60 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP------NLEFSGLM--TIGMPD 131 (199)
Q Consensus 60 ~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~------~L~l~GLm--t~~~~~ 131 (199)
..|...+.+..|.++.++.|. |.+|||..|.-+ --| ..+...+.++... ..+ .+.+.=++ +|++.+
T Consensus 203 ~~vtp~~ii~~l~~~~~~lg~-ph~iH~h~nnlg---~pg-n~~~t~~t~~~~~-~~~~~~~~~~~h~tH~qfhsyg~~~ 276 (541)
T cd01304 203 FDITPREILKGLAEANEELGL-PHSIHVHCNNLG---VPG-NYETTLETMKAAE-GVKPDPRRQVLHLTHVQFHSYGGTS 276 (541)
T ss_pred CCCCHHHHHHHHHHHHHhcCC-ceEEEEccccCC---CCC-cHHHHHHHHHHhh-cCCCccccceeEeeeeeEEeeccCC
Confidence 357889999999999999998 999999977532 122 2244455555544 454 25555554 666554
No 104
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=44.45 E-value=1.4e+02 Score=26.64 Aligned_cols=17 Identities=12% Similarity=0.347 Sum_probs=7.4
Q ss_pred CccCCChhhHHHHHHHH
Q 029062 96 SKSGIDPSSCLGIVEHV 112 (199)
Q Consensus 96 ~R~Gv~~~~~~~l~~~i 112 (199)
+|.|+.++.+.++.+.+
T Consensus 257 ~~~G~~~~l~~~vr~~L 273 (352)
T PRK07188 257 DPRGVNPELIKALRKAL 273 (352)
T ss_pred ccccccHHHHHHHHHHH
Confidence 34444444444444333
No 105
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=43.15 E-value=81 Score=23.33 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=41.7
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+|+..+.+.. .+...+.+..+ -.........+.+ .++++ .++|+.+.-..+++.|.+.+.
T Consensus 54 G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~---~~d~vi~~~d~~~~~~~l~~~~~~~~~ 118 (135)
T PF00899_consen 54 GKNKAEAAKERLQEINPDVEVEAIPEKIDEENIEELLK---DYDIVIDCVDSLAARLLLNEICREYGI 118 (135)
T ss_dssp TSBHHHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHHH---TSSEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHhcCceeeeeeeccccccccccccc---CCCEEEEecCCHHHHHHHHHHHHHcCC
Confidence 778888888887 55333333333 3334456666663 35655 579999999999999999875
No 106
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=43.12 E-value=2e+02 Score=24.15 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-----CC------
Q 029062 64 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-----DY------ 132 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-----~~------ 132 (199)
+.+.+.++-+..++. . .++|.+++.++ +++++..++++.+. +.. +.+|..+... +.
T Consensus 146 ~~~~~~eiv~~vr~~-~-~~pv~vKl~~~-------~~~~~~~~~a~~l~-~~G---ad~i~~~~~~~~~~~~~~~~~~~ 212 (289)
T cd02810 146 DPEAVANLLKAVKAA-V-DIPLLVKLSPY-------FDLEDIVELAKAAE-RAG---ADGLTAINTISGRVVDLKTVGPG 212 (289)
T ss_pred CHHHHHHHHHHHHHc-c-CCCEEEEeCCC-------CCHHHHHHHHHHHH-HcC---CCEEEEEcccCccceecccCccc
Confidence 344444444444332 1 35678777754 45667788888776 542 2333333211 00
Q ss_pred --C-----ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCccccCCCc
Q 029062 133 --T-----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 133 --~-----~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
. .-......-.+....+++..+.. ++.+..|.=.+.+ ..+..|++.|.+|+.++.+.|
T Consensus 213 ~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~--ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP 280 (289)
T cd02810 213 PKRGTGGLSGAPIRPLALRWVARLAARLQLD--IPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGP 280 (289)
T ss_pred cCCCCCccCcHHHHHHHHHHHHHHHHhcCCC--CCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCc
Confidence 0 00111111233445555543112 3555455445544 446789999999999998733
No 107
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=42.19 E-value=2.5e+02 Score=25.04 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=63.4
Q ss_pred HHHHHHHHHH-HHhcCCCCceEEEEEeCC-------------CCCCccCCChhhHHHHHHHHHhcC--CCeeEEEEEe--
Q 029062 65 EKIANHLDKA-VSNLGRKPLKVLVQVNTS-------------GEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLMT-- 126 (199)
Q Consensus 65 ~~~a~~l~~~-a~~~g~~~i~VllqIntg-------------~e~~R~Gv~~~~~~~l~~~i~~~~--~~L~l~GLmt-- 126 (199)
.+.+.++-+. .+..|. ...|.++++.. .+....|.++++..++++.+. .. +.|.+.|=..
T Consensus 201 ~rf~~eii~~vr~~~g~-~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~-~~gvD~l~vs~g~~~~ 278 (382)
T cd02931 201 LRFAIEIVEEIKARCGE-DFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILE-EAGYDALDVDAGSYDA 278 (382)
T ss_pred hHHHHHHHHHHHHhcCC-CceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHH-HhCCCEEEeCCCCCcc
Confidence 3444333333 334454 56788888741 122356888999999999886 54 3333322110
Q ss_pred -eCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCcccc
Q 029062 127 -IGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREYAK 195 (199)
Q Consensus 127 -~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~~~ 195 (199)
+........... .+..+.+.+++..+++ ...+.|. .|.+ .+++.| .++|-.|..+..|-...+
T Consensus 279 ~~~~~~~~~~~~~--~~~~~~~~ik~~~~~p---vi~~G~i-~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~ 346 (382)
T cd02931 279 WYWNHPPMYQKKG--MYLPYCKALKEVVDVP---VIMAGRM-EDPELASEAINEGIADMISLGRPLLADPDVVN 346 (382)
T ss_pred cccccCCccCCcc--hhHHHHHHHHHHCCCC---EEEeCCC-CCHHHHHHHHHcCCCCeeeechHhHhCccHHH
Confidence 000000000000 1123444555543432 3345444 4544 446666 799999999998876543
No 108
>PRK07534 methionine synthase I; Validated
Probab=42.14 E-value=1.6e+02 Score=25.97 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=41.1
Q ss_pred EEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC-CCCccCCChhhHHHHHHHHHhcC-CCeeEEEEEee
Q 029062 58 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-EESKSGIDPSSCLGIVEHVRLRC-PNLEFSGLMTI 127 (199)
Q Consensus 58 ~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~-e~~R~Gv~~~~~~~l~~~i~~~~-~~L~l~GLmt~ 127 (199)
+..++-|++.++.+-+++++.+. +|++.+.+.. ..-+.|.+.+++.+.+ . .+ +.+...|+-|.
T Consensus 149 ~~ET~p~l~E~~a~~~~~~~~~~---Pv~vSft~~~~g~l~~G~~~~~~~~~~---~-~~~~~~~avGvNC~ 213 (336)
T PRK07534 149 WVETISAPEEIRAAAEAAKLAGM---PWCGTMSFDTAGRTMMGLTPADLADLV---E-KLGEPPLAFGANCG 213 (336)
T ss_pred EEeccCCHHHHHHHHHHHHHcCC---eEEEEEEECCCCeeCCCCcHHHHHHHH---H-hcCCCceEEEecCC
Confidence 56899999999999999987764 5666554421 1235777665555544 3 33 35677788443
No 109
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=41.56 E-value=2.6e+02 Score=24.90 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=67.6
Q ss_pred HHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCC-CCceEEEEEeCCCCCCccCCChhhHHHH--HHHHHhcCCCeeE
Q 029062 45 KAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR-KPLKVLVQVNTSGEESKSGIDPSSCLGI--VEHVRLRCPNLEF 121 (199)
Q Consensus 45 ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~-~~i~VllqIntg~e~~R~Gv~~~~~~~l--~~~i~~~~~~L~l 121 (199)
-++++..+ ....=++.|.+.+......+...+.+. ....+++| . .|=+...+..+ ....+ ..+
T Consensus 40 T~~R~~~l-~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~illE--P------~gRnTApAIA~aa~~~~~-~~~---- 105 (333)
T COG0836 40 TVKRLAFL-GDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILE--P------EGRNTAPAIALAALSATA-EGG---- 105 (333)
T ss_pred HHHHHhhc-CCccCeEEEeCHHHHHHHHHHHhhhhhccccceEec--c------CCCCcHHHHHHHHHHHHH-hCC----
Confidence 34445432 124456778999999888888887433 02335554 2 12222223333 33333 333
Q ss_pred EEEEeeCCCCCC-ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHHHHcCCCEEecCccc
Q 029062 122 SGLMTIGMPDYT-STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTI 187 (199)
Q Consensus 122 ~GLmt~~~~~~~-~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~i 187 (199)
..++...|.+-- ...+.|....+....+.++ | ..++.|++||.| +.|+-.|++|--+
T Consensus 106 d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~-g-----~lVTfGI~Pt~P---eTGYGYIe~G~~~ 163 (333)
T COG0836 106 DALVLVLPSDHVIADEEAFLNAVKKAEKAAEE-G-----GIVTFGIPPTRP---ETGYGYIETGESI 163 (333)
T ss_pred CcEEEEecCcceeccHHHHHHHHHHHHHHHHc-C-----CEEEEecCCCCC---ccCcceeecCccc
Confidence 567776665321 1233454433333334343 3 358999999998 8899999998754
No 110
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=40.96 E-value=2.3e+02 Score=25.71 Aligned_cols=100 Identities=13% Similarity=0.221 Sum_probs=55.2
Q ss_pred HHHHHhc---cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecC--cHHHHHHHHHHHHhcCCCCc
Q 029062 9 VKITYKK---SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVG--NEKIANHLDKAVSNLGRKPL 83 (199)
Q Consensus 9 ~~~~~~~---~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVD--s~~~a~~l~~~a~~~g~~~i 83 (199)
||..|+. ++=.++|..+.. +.+..+|.|. |+.+| |..-.++..+| +.+.+..+.+.....+
T Consensus 133 t~~ai~~a~~~~p~~~~~~~~~---~~~~h~~~~~----~~~~~---~~~p~L~vALD~~~~~~A~~i~~~l~~~~---- 198 (391)
T PRK13307 133 TKLAIKRALEGFPDVDKVLYEK---DRALHPIMGF----KVTRL---WDPPYLQVALDLPDLEEVERVLSQLPKSD---- 198 (391)
T ss_pred HHHHHHHHHhCCCCHHHHHhhh---hcccCCcccc----chhhh---cccceEEEecCCCCHHHHHHHHHhccccc----
Confidence 4444443 444455555554 2467788887 44433 44456777777 6777766666443221
Q ss_pred eEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC-CC-eeEEEEEeeCCC
Q 029062 84 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC-PN-LEFSGLMTIGMP 130 (199)
Q Consensus 84 ~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~-~~-L~l~GLmt~~~~ 130 (199)
..+++|-+.. .-++| .++++.++ +. ++ .-+.=||++.+.
T Consensus 199 ~~~iKvG~~L-~~~~G------~~iVk~Lr-~~~~~~~I~~DLK~~Di~ 239 (391)
T PRK13307 199 HIIIEAGTPL-IKKFG------LEVISKIR-EVRPDAFIVADLKTLDTG 239 (391)
T ss_pred ceEEEECHHH-HHHhC------HHHHHHHH-HhCCCCeEEEEecccChh
Confidence 2466776553 23445 34556665 43 43 456667877665
No 111
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=40.21 E-value=1.4e+02 Score=23.47 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhc-CC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNL-GR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~-g~ 80 (199)
+.+|++.+..+. .+...+.+..+ ..+....+..++ +.+++++ +.|+.+.-..+.+.+.+. +.
T Consensus 50 g~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~~~~~~l---~~~DlVi~~~d~~~~r~~i~~~~~~~~~i 115 (174)
T cd01487 50 GEPKVEALKENLREINPFVKIEAINIKIDENNLEGLF---GDCDIVVEAFDNAETKAMLAESLLGNKNK 115 (174)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEEEeecChhhHHHHh---cCCCEEEECCCCHHHHHHHHHHHHHHCCC
Confidence 678888888877 66434444332 444445566666 4577665 569999887788877776 64
No 112
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=40.08 E-value=96 Score=27.70 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=44.3
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+|++-+.++. .+...+.+..+ ..+....+..++ ..+++++ +.|+.+.-..+++.|.+.++
T Consensus 93 G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~---~~~DlVid~~Dn~~~r~~in~~~~~~~i 157 (370)
T PRK05600 93 GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELL---NGVDLVLDGSDSFATKFLVADAAEITGT 157 (370)
T ss_pred CCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 678888888887 66545665554 344444555666 4577665 68999999999999998775
No 113
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=39.74 E-value=2.8e+02 Score=24.79 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=47.2
Q ss_pred CceEEEEEe-CCCCCCccCCChhhH-----HHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCC
Q 029062 82 PLKVLVQVN-TSGEESKSGIDPSSC-----LGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGM 155 (199)
Q Consensus 82 ~i~VllqIn-tg~e~~R~Gv~~~~~-----~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~ 155 (199)
.+.+|++.- .+ +.|-|..+++. .+.++.+. ...+ .++ +||++|-.. .. ++.+.|.++ |+
T Consensus 125 ~~G~HlEGPfi~--~~~~Gah~~~~~~~p~~~~~~~~~-~~~~-~i~-~iTlAPE~~--~~-------~~i~~l~~~-gi 189 (382)
T PRK11170 125 ALGLHLEGPYLN--LVKKGTHNPEFIRKPDAEMVDFLC-ENAD-VIT-KVTLAPEMV--DA-------EVIRKLVEA-GI 189 (382)
T ss_pred EEEEEeecCCCC--cccCCCCCHHHhcCcCHHHHHHHH-hccC-CEE-EEEECCCCC--cH-------HHHHHHHHC-Cc
Confidence 688999874 33 56888865444 24444444 3322 122 899987521 11 345556665 75
Q ss_pred CCCCCEEEecCCc-CHH---HHHHcCCCEE
Q 029062 156 AEDQCELSMGMSG-DFE---QAIEMGSTSV 181 (199)
Q Consensus 156 ~~~~~~lS~Gms~-d~~---~a~~~g~t~V 181 (199)
.+|+|=|+ ||+ .|++.|++.+
T Consensus 190 -----~vs~GHs~A~~~~~~~a~~~Ga~~~ 214 (382)
T PRK11170 190 -----VVSAGHSNATYEEAKAGFRAGITFA 214 (382)
T ss_pred -----EEEeeCCcCCHHHHHHHHHcCCCEE
Confidence 47988664 455 4467888755
No 114
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=39.65 E-value=2.7e+02 Score=24.69 Aligned_cols=103 Identities=13% Similarity=0.165 Sum_probs=55.0
Q ss_pred hcCCCCceEEEEEeCCC--CCCccCCChhh-HHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHh
Q 029062 77 NLGRKPLKVLVQVNTSG--EESKSGIDPSS-CLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKAL 153 (199)
Q Consensus 77 ~~g~~~i~VllqIntg~--e~~R~Gv~~~~-~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~ 153 (199)
..|. .. |.++++..+ +....|.+++| ..++++.+. +. ++.+.-+-. +...... . + ...+.+.+++..
T Consensus 222 ~vg~-~~-igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~-~~-giD~i~vs~-~~~~~~~--~-~--~~~~~~~ik~~~ 291 (362)
T PRK10605 222 EWGA-DR-IGIRISPLGTFNNVDNGPNEEADALYLIEQLG-KR-GIAYLHMSE-PDWAGGE--P-Y--SDAFREKVRARF 291 (362)
T ss_pred HcCC-Ce-EEEEECCccccccCCCCCCHHHHHHHHHHHHH-Hc-CCCEEEecc-ccccCCc--c-c--cHHHHHHHHHHC
Confidence 4454 43 888887532 11245788877 789998886 53 233322211 1111011 0 1 123345566654
Q ss_pred CCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCccc
Q 029062 154 GMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREYA 194 (199)
Q Consensus 154 g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~~ 194 (199)
+. +.+..|. .|.+ .+++.| +++|-.|..+.-|-+..
T Consensus 292 ~~----pv~~~G~-~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~ 331 (362)
T PRK10605 292 HG----VIIGAGA-YTAEKAETLIGKGLIDAVAFGRDYIANPDLV 331 (362)
T ss_pred CC----CEEEeCC-CCHHHHHHHHHcCCCCEEEECHHhhhCccHH
Confidence 43 3333343 3444 336777 79999999998877544
No 115
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=39.23 E-value=1.6e+02 Score=26.38 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=53.9
Q ss_pred CCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC--CCeeEEEEEeeCCCCC--------------CCh-HHHHHH
Q 029062 79 GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLMTIGMPDY--------------TST-PENFRT 141 (199)
Q Consensus 79 g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~--~~L~l~GLmt~~~~~~--------------~~~-~~~f~~ 141 (199)
+. +.+||+.|-.. +..+++.+++..++ ++ +++.+-+...--+.+. .+. .-+...
T Consensus 250 ~~-~~pvl~kiapD-------L~~~el~dia~v~k-k~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~ 320 (398)
T KOG1436|consen 250 GK-KPPVLVKIAPD-------LSEKELKDIALVVK-KLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNT 320 (398)
T ss_pred CC-CCceEEEeccc-------hhHHHHHHHHHHHH-HhCccceeecCceeecCccccccccccccCCCCCCccchhHHHH
Confidence 44 66999998765 34566777776665 43 4555555433221110 111 223344
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEecCCc---CHHHHHHcCCCEEecCccccCCCc
Q 029062 142 LLNCRAEVCKALGMAEDQCELSMGMSG---DFEQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 142 l~~~~~~l~~~~g~~~~~~~lS~Gms~---d~~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
++.++..++. .++.+-.|+-. |...-+++|++||+++|++-.+.+
T Consensus 321 vR~mY~lt~g------~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp 368 (398)
T KOG1436|consen 321 VRAMYTLTRG------KIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGP 368 (398)
T ss_pred HHHHHHhccC------CCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCc
Confidence 4444444432 13455333322 333557899999999998765543
No 116
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=38.30 E-value=1.9e+02 Score=22.61 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=25.9
Q ss_pred CEEEecCCcCHH-HHHHcCCCEEecCccccCCCcc
Q 029062 160 CELSMGMSGDFE-QAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 160 ~~lS~Gms~d~~-~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
..++.|.|++-- .+.+.|++-+=+||+||...++
T Consensus 161 i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d~ 195 (202)
T cd04726 161 VAVAGGITPDTLPEFKKAGADIVIVGRAITGAADP 195 (202)
T ss_pred EEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCCH
Confidence 456888876543 4468899999999999986543
No 117
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=37.68 E-value=38 Score=30.21 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred CccCCCh----hhHHHHHHHHHhcCCCeeEEEEEe-eCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCC----CEE-Eec
Q 029062 96 SKSGIDP----SSCLGIVEHVRLRCPNLEFSGLMT-IGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQ----CEL-SMG 165 (199)
Q Consensus 96 ~R~Gv~~----~~~~~l~~~i~~~~~~L~l~GLmt-~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~----~~l-S~G 165 (199)
.+.|++. ....+-..+|. .+-+.-+.+++| +...+. .....|+.+.++....++ .|+...+ ..+ ..|
T Consensus 2 ~~~GfSifp~~~~~~~~~~Yi~-~~~~~Gf~~IFtsl~~~~~-~~~~~~~~~~ell~~Ank-lg~~vivDvnPsil~~l~ 78 (360)
T COG3589 2 RMLGFSIFPNRSPKEKDIAYID-RMHKYGFKRIFTSLLIPEE-DAELYFHRFKELLKEANK-LGLRVIVDVNPSILKELN 78 (360)
T ss_pred cceeEEeccCCCcchhHHHHHH-HHHHcCccceeeecccCCc-hHHHHHHHHHHHHHHHHh-cCcEEEEEcCHHHHhhcC
Confidence 3566642 22334556676 666677888854 443332 234678888888888776 4765311 111 567
Q ss_pred CCcCHH-HHHHcCCCEEecCcc
Q 029062 166 MSGDFE-QAIEMGSTSVRIGST 186 (199)
Q Consensus 166 ms~d~~-~a~~~g~t~VR~Gs~ 186 (199)
.|.+.. ..-+.|.+.||.--.
T Consensus 79 ~S~~~l~~f~e~G~~glRlD~g 100 (360)
T COG3589 79 ISLDNLSRFQELGVDGLRLDYG 100 (360)
T ss_pred CChHHHHHHHHhhhhheeeccc
Confidence 777733 445789999997543
No 118
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=37.27 E-value=1.6e+02 Score=27.20 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCCCC-CEEEecCCc-CHHHHHHcCCCEEecC
Q 029062 143 LNCRAEVCKALGMAEDQ-CELSMGMSG-DFEQAIEMGSTSVRIG 184 (199)
Q Consensus 143 ~~~~~~l~~~~g~~~~~-~~lS~Gms~-d~~~a~~~g~t~VR~G 184 (199)
.+++..+++.++++... .|.+.||+. +|..|+++|+++|-.-
T Consensus 188 yelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 188 YELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred HHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhh
Confidence 34555566655654211 355778864 4557789999876543
No 119
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=36.48 E-value=1.3e+02 Score=22.37 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=37.5
Q ss_pred CccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChh
Q 029062 55 NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS 103 (199)
Q Consensus 55 ~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~ 103 (199)
...++.-++|++.+..|.+.+.+.|. +-.++.|+-.|- ..=.|+-|.
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi-~~~l~te~p~gt-~T~LaigP~ 101 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSI-KHKLWIEQPENI-PTCIALKPY 101 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEEcCCCC-ceEEEeCCC
Confidence 35789999999999999999999998 878888886552 344666663
No 120
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=36.46 E-value=1.4e+02 Score=26.78 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=43.0
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~g~ 80 (199)
|.+|++-+.++. .+...+....+ ..+....+..++ ..+++++ +.|+...-..++++|.+.++
T Consensus 94 G~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~---~~~D~Vvd~~d~~~~r~~ln~~~~~~~~ 158 (392)
T PRK07878 94 GRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELF---SQYDLILDGTDNFATRYLVNDAAVLAGK 158 (392)
T ss_pred CChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHH---hcCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 678888888887 66444444322 455555555666 4577665 67999988899999988765
No 121
>PLN02489 homocysteine S-methyltransferase
Probab=36.34 E-value=3e+02 Score=24.19 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=45.7
Q ss_pred EEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC-CCccCCChhhHHHHHHHHHhcCCCeeEEEEEee
Q 029062 58 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE-ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 127 (199)
Q Consensus 58 ~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e-~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~ 127 (199)
+..|+-++..++.+-+++++.+. .+++++.+.+-.+ .-+.|.+++++ ++.+. +...+...|+-|.
T Consensus 185 ~~ET~~~l~E~~a~~~~~~~~~~-~~p~~iS~t~~~~~~l~~G~~~~~~---~~~~~-~~~~~~~iGiNC~ 250 (335)
T PLN02489 185 AFETIPNKLEAQAYVELLEEENI-KIPAWISFNSKDGVNVVSGDSLLEC---ASIAD-SCKKVVAVGINCT 250 (335)
T ss_pred EEeccCChHHHHHHHHHHHHcCC-CCeEEEEEEeCCCCccCCCCcHHHH---HHHHH-hcCCceEEEecCC
Confidence 56799999999999999988764 5788888876321 22567766554 44444 4556778888664
No 122
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=36.07 E-value=1.6e+02 Score=25.02 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHHHHcCCCEEecCccccCC
Q 029062 136 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 136 ~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd 190 (199)
.+....|..+..++++..+++..+..+..+....+.+|...|++.||+..+.+..
T Consensus 62 ~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~ 116 (254)
T PF03437_consen 62 PETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAY 116 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEcee
Confidence 4455667777778877666654445566444455667778899999988887754
No 123
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=35.88 E-value=2.4e+02 Score=23.01 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEE-eeCCCCCCChHHHHHHH
Q 029062 64 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM-TIGMPDYTSTPENFRTL 142 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLm-t~~~~~~~~~~~~f~~l 142 (199)
+.+.+...-+.+++.|. . |.+-+-+ ..|+..+++++.++++.+. ++. .....|. |.+... .++ +
T Consensus 113 ~~~~~~~~i~~a~~~G~-~--v~~~~~~---~~~~~~~~~~l~~~~~~~~-~~g-~~~i~l~Dt~G~~~----P~~---v 177 (265)
T cd03174 113 DLENAEEAIEAAKEAGL-E--VEGSLED---AFGCKTDPEYVLEVAKALE-EAG-ADEISLKDTVGLAT----PEE---V 177 (265)
T ss_pred HHHHHHHHHHHHHHCCC-e--EEEEEEe---ecCCCCCHHHHHHHHHHHH-HcC-CCEEEechhcCCcC----HHH---H
Confidence 45666666666677764 3 3333311 1344578889999999887 664 3333332 122112 222 2
Q ss_pred HHHHHHHHHHhC-CCCCC-CEEEecCC-cCHHHHHHcCCCEEecCccccCCC
Q 029062 143 LNCRAEVCKALG-MAEDQ-CELSMGMS-GDFEQAIEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 143 ~~~~~~l~~~~g-~~~~~-~~lS~Gms-~d~~~a~~~g~t~VR~Gs~ifgd~ 191 (199)
.+++..+++..+ ++..+ .|...|+. .....|++.|++.|-....=+|.+
T Consensus 178 ~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~ 229 (265)
T cd03174 178 AELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGER 229 (265)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccccccc
Confidence 333444444322 21100 12233442 123366789998886655545433
No 124
>PRK08223 hypothetical protein; Validated
Probab=35.66 E-value=1.1e+02 Score=26.46 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=43.6
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcH--HHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNE--KIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~--~~a~~l~~~a~~~g~ 80 (199)
|.++++.+.++. .+...++...+ ..+....+..++ ..+|+++ ..|+. +.-..++++|.+.++
T Consensus 79 G~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll---~~~DlVvD~~D~~~~~~r~~ln~~c~~~~i 145 (287)
T PRK08223 79 GRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFL---DGVDVYVDGLDFFEFDARRLVFAACQQRGI 145 (287)
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHH---hCCCEEEECCCCCcHHHHHHHHHHHHHcCC
Confidence 788999998888 77555555544 345445566677 4578765 45654 777889999999886
No 125
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=34.22 E-value=1.7e+02 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=26.6
Q ss_pred CCCCCCc----cCCChhhHHHHHHHHHhcCC-CeeEEEE
Q 029062 91 TSGEESK----SGIDPSSCLGIVEHVRLRCP-NLEFSGL 124 (199)
Q Consensus 91 tg~e~~R----~Gv~~~~~~~l~~~i~~~~~-~L~l~GL 124 (199)
.|.++.+ .||+++++.++++.++ .+. +.-+-||
T Consensus 217 ~G~~~~~~eev~gvp~~~i~e~a~~mK-na~Fg~if~Gl 254 (429)
T COG1029 217 HGKEPHRSEEVAGVPIEEIEELADMMK-NAKFGAIFVGL 254 (429)
T ss_pred cCCCCCCchhhcCCCHHHHHHHHHHHh-cCCcceEEEee
Confidence 5666666 8999999999999998 555 6777777
No 126
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=34.14 E-value=3.3e+02 Score=24.08 Aligned_cols=50 Identities=6% Similarity=0.001 Sum_probs=38.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC
Q 029062 62 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 116 (199)
Q Consensus 62 VDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~ 116 (199)
.-+.++++.|++.+.+.|. . .+.+.+.....=.|++.+++.++.+.+. ..
T Consensus 40 ~lt~eqLr~LAdiaekyg~-g---~i~lTtrQnI~l~~I~~edl~~i~~~L~-~~ 89 (341)
T TIGR02066 40 LLSVDTLRKLCDIADKYSD-G---YLRWTIRNNVEFLVSDESKIQPLIDELE-EV 89 (341)
T ss_pred ccCHHHHHHHHHHHHHhCC-C---eEEEeccCCEEEecCCHHHHHHHHHHHH-hc
Confidence 5688999999999999985 2 4455565445556888999999999887 53
No 127
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=34.12 E-value=2.4e+02 Score=22.42 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=39.9
Q ss_pred EEEEEeeCCC-CCCC-hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH-HHHHcCCCEEecCccccCCCc
Q 029062 121 FSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE-QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 121 l~GLmt~~~~-~~~~-~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~-~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+.++|++.+. +... ....++.++++++..... ++++ ...+-.|.|++-- ...+.|++-|=+||+||++.+
T Consensus 134 ~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~-~~~~-~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 134 LVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDER-GLDI-LIEVDGGINADNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred EEEEEEECCCCCcccccHHHHHHHHHHHHHHHhc-CCCc-eEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 6667776432 2221 233455555555443321 2221 1235678887533 334689999999999998654
No 128
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=33.74 E-value=2.3e+02 Score=22.21 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=38.4
Q ss_pred EEEEeeCCC-CCC-ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH-HHHHcCCCEEecCccccCCCc
Q 029062 122 SGLMTIGMP-DYT-STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE-QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 122 ~GLmt~~~~-~~~-~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~-~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
..+|++.+. +.. .....++.+.++++.+.+. .... ...+..|.+++-- ...+.|++.+=+|+++|+..+
T Consensus 130 i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~-~~~~-~i~v~GGI~~env~~l~~~gad~iivgsai~~~~d 201 (210)
T TIGR01163 130 VLLMSVNPGFGGQKFIPDTLEKIREVRKMIDEN-GLSI-LIEVDGGVNDDNARELAEAGADILVAGSAIFGADD 201 (210)
T ss_pred EEEEEEcCCCCcccccHHHHHHHHHHHHHHHhc-CCCc-eEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCC
Confidence 446666432 211 1233445555554444322 2211 1235678876543 336889999999999998654
No 129
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.57 E-value=2.8e+02 Score=24.72 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=59.6
Q ss_pred HHHHHHHHHH-HhcCCCCceEEEEEeCC--CCC-CccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHH
Q 029062 66 KIANHLDKAV-SNLGRKPLKVLVQVNTS--GEE-SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRT 141 (199)
Q Consensus 66 ~~a~~l~~~a-~~~g~~~i~VllqIntg--~e~-~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~ 141 (199)
+.+.++-+.. +..|. ..+|-++++.. .+. .+.|.++++...+++.+. +. ++.+.-+-+ +..........
T Consensus 195 Rf~~eii~air~~vG~-d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~-~~-gvd~i~vs~-g~~~~~~~~~~--- 267 (361)
T cd04747 195 RFAAEVVKAIRAAVGP-DFPIILRFSQWKQQDYTARLADTPDELEALLAPLV-DA-GVDIFHCST-RRFWEPEFEGS--- 267 (361)
T ss_pred HHHHHHHHHHHHHcCC-CCeEEEEECcccccccccCCCCCHHHHHHHHHHHH-Hc-CCCEEEecC-CCccCCCcCcc---
Confidence 3333333333 33465 67899999841 111 245788888888888886 54 344321111 11000000000
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEecC--------------------CcC-HHHHHHcC-CCEEecCccccCCCcccc
Q 029062 142 LLNCRAEVCKALGMAEDQCELSMGM--------------------SGD-FEQAIEMG-STSVRIGSTIFGPREYAK 195 (199)
Q Consensus 142 l~~~~~~l~~~~g~~~~~~~lS~Gm--------------------s~d-~~~a~~~g-~t~VR~Gs~ifgd~~~~~ 195 (199)
...+...+++..+. +.+..|+ |+. .+.+++.| +++|-.|..+..|-...+
T Consensus 268 ~~~~~~~~k~~~~~----pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~ 339 (361)
T cd04747 268 ELNLAGWTKKLTGL----PTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVA 339 (361)
T ss_pred chhHHHHHHHHcCC----CEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHH
Confidence 11223344444233 3444443 222 22446665 799999999988765543
No 130
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=33.35 E-value=2.4e+02 Score=24.80 Aligned_cols=100 Identities=6% Similarity=0.124 Sum_probs=56.7
Q ss_pred ceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-C--CCChHHHHHHHHHHHHHHHHHhCCCCCC
Q 029062 83 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-D--YTSTPENFRTLLNCRAEVCKALGMAEDQ 159 (199)
Q Consensus 83 i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~--~~~~~~~f~~l~~~~~~l~~~~g~~~~~ 159 (199)
.+|.++++..+ ....|.++++..++++.+. +. ++.+.-+ +.+. . .......+ ...+.+.+++..++
T Consensus 208 ~~v~vRis~~d-~~~~G~~~~e~~~i~~~l~-~~-gvD~i~v--s~g~~~~~~~~~~~~~--~~~~~~~ik~~~~i---- 276 (337)
T PRK13523 208 GPLFVRISASD-YHPGGLTVQDYVQYAKWMK-EQ-GVDLIDV--SSGAVVPARIDVYPGY--QVPFAEHIREHANI---- 276 (337)
T ss_pred CCeEEEecccc-cCCCCCCHHHHHHHHHHHH-Hc-CCCEEEe--CCCCCCCCCCCCCccc--cHHHHHHHHhhcCC----
Confidence 46888888643 3456899999999999887 53 3333222 2221 0 00000111 22344556654333
Q ss_pred CEEEecCCcCHH---HHHHcC-CCEEecCccccCCCcc
Q 029062 160 CELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREY 193 (199)
Q Consensus 160 ~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~ 193 (199)
+.+..|.-.|.+ .+++.| +++|-.|..+..|...
T Consensus 277 pVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~ 314 (337)
T PRK13523 277 ATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYF 314 (337)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccH
Confidence 444444434444 346666 8999999999988654
No 131
>PRK06801 hypothetical protein; Provisional
Probab=33.33 E-value=2.6e+02 Score=24.12 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHhcCCCCceEEEEEe-CCCCCC-----ccCC----ChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC
Q 029062 64 NEKIANHLDKAVSNLGRKPLKVLVQVN-TSGEES-----KSGI----DPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT 133 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g~~~i~VllqIn-tg~e~~-----R~Gv----~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~ 133 (199)
+.+..+++.+.|...|. .|=.++- +|++.. ..|. .|+++.++++.. ..+-|-+ .+.|..+....
T Consensus 113 Ni~~t~~v~~~a~~~gv---~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~t--gvD~LAv-aiGt~Hg~y~~ 186 (286)
T PRK06801 113 NVRQTREVVKMCHAVGV---SVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRT--GIDALAV-AIGNAHGKYKG 186 (286)
T ss_pred HHHHHHHHHHHHHHcCC---eEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHH--CcCEEEe-ccCCCCCCCCC
Confidence 44555566666666653 3333432 222111 0122 456666666543 2343443 33222111111
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC----HHHHHHcCCCEEecCccccCCC
Q 029062 134 STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD----FEQAIEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 134 ~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d----~~~a~~~g~t~VR~Gs~ifgd~ 191 (199)
...-.|+.+.++.+.+ ++ +.+--|+|+. +..+++.|.+-|=++|.++...
T Consensus 187 ~~~l~~e~l~~i~~~~----~~----PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~ 240 (286)
T PRK06801 187 EPKLDFARLAAIHQQT----GL----PLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAA 240 (286)
T ss_pred CCCCCHHHHHHHHHhc----CC----CEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHH
Confidence 1123566666654432 33 2333344332 3356899999999999987643
No 132
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=30.43 E-value=3.5e+02 Score=23.18 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=20.1
Q ss_pred CCChhhHHHHHHHHHhcCCC----eeEEEEEee
Q 029062 99 GIDPSSCLGIVEHVRLRCPN----LEFSGLMTI 127 (199)
Q Consensus 99 Gv~~~~~~~l~~~i~~~~~~----L~l~GLmt~ 127 (199)
+.+|+++.-.+++|. ...| |.-||+ |+
T Consensus 126 ~~t~~e~l~aaeyi~-~~Gn~~viLcERG~-tf 156 (258)
T TIGR01362 126 FLSPWDMKNVVEKVL-STGNKNILLCERGT-SF 156 (258)
T ss_pred cCCHHHHHHHHHHHH-HcCCCcEEEEeCCC-Cc
Confidence 368899999999998 6544 555787 44
No 133
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=30.20 E-value=1.2e+02 Score=25.47 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=33.7
Q ss_pred CCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC
Q 029062 99 GIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 169 (199)
Q Consensus 99 Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d 169 (199)
|-.|+.+.++++.+...+ ++++.|.+ ++..++++ -.++.+.+++. +.+ +..+.||+ |-
T Consensus 112 G~~~~v~~~a~~~l~~~y-~l~i~g~~-~Gyf~~~e-------~~~i~~~I~~s-~~d--il~VglG~-Pk 169 (243)
T PRK03692 112 GGKPEVLAQTEAKLRTQW-NVNIVGSQ-DGYFTPEQ-------RQALFERIHAS-GAK--IVTVAMGS-PK 169 (243)
T ss_pred CCCHHHHHHHHHHHHHHh-CCEEEEEe-CCCCCHHH-------HHHHHHHHHhc-CCC--EEEEECCC-cH
Confidence 346667778888886467 89998875 34443221 12355666653 543 34556665 44
No 134
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=29.67 E-value=5.1e+02 Score=25.39 Aligned_cols=117 Identities=9% Similarity=0.138 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHh-cCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-CCC---ChHHHH
Q 029062 65 EKIANHLDKAVSN-LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYT---STPENF 139 (199)
Q Consensus 65 ~~~a~~l~~~a~~-~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~~~---~~~~~f 139 (199)
.+.+.++-++.++ .|. ..+|.++|+..+ ....|.++++..++++.+. +. ++.+.- .+.+. ... .....+
T Consensus 601 ~r~~~eiv~~ir~~~~~-~~~v~~ri~~~~-~~~~g~~~~~~~~~~~~l~-~~-g~d~i~--vs~g~~~~~~~~~~~~~~ 674 (765)
T PRK08255 601 LRYPLEVFRAVRAVWPA-EKPMSVRISAHD-WVEGGNTPDDAVEIARAFK-AA-GADLID--VSSGQVSKDEKPVYGRMY 674 (765)
T ss_pred hHHHHHHHHHHHHhcCC-CCeeEEEEcccc-ccCCCCCHHHHHHHHHHHH-hc-CCcEEE--eCCCCCCcCCCCCcCccc
Confidence 3444444444433 354 578999998643 3456888899999999887 54 333322 22111 100 000001
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCcc
Q 029062 140 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREY 193 (199)
Q Consensus 140 ~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~ 193 (199)
...+.+.+++..++ +.+..|.-.|.+ .+++.| +++|-+|..+..|-..
T Consensus 675 --~~~~~~~ik~~~~~----pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 675 --QTPFADRIRNEAGI----ATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAW 726 (765)
T ss_pred --cHHHHHHHHHHcCC----EEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence 12334556654333 345555545544 335554 7999999999887654
No 135
>PRK08123 histidinol-phosphatase; Reviewed
Probab=28.74 E-value=2.1e+02 Score=24.01 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCC-ChhhHHHHHHHHHhcC
Q 029062 67 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGI-DPSSCLGIVEHVRLRC 116 (199)
Q Consensus 67 ~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv-~~~~~~~l~~~i~~~~ 116 (199)
..+++-+++.+.| +.|||||++ ..|..+ .+-....+++..+ ++
T Consensus 198 ~~~~il~~~~~~g-----~~lEINtsg-l~~~~~~~~yP~~~il~~~~-e~ 241 (270)
T PRK08123 198 LIEDILALIKKRG-----YELDFNTAG-LRKPYCGEPYPPGEIITLAK-KL 241 (270)
T ss_pred HHHHHHHHHHHcC-----CEEEEEchh-hcCCCCCCCCCcHHHHHHHH-Hc
Confidence 4455555555554 689999985 444222 2223355666666 55
No 136
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=28.69 E-value=67 Score=26.20 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=64.7
Q ss_pred ccEEEecCc--------------HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeE
Q 029062 56 LDMVEGVGN--------------EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 121 (199)
Q Consensus 56 ~~~i~sVDs--------------~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l 121 (199)
+++..++.. .+.+...-+.+++.|. .| .++.- .-+..+++.+.++++.+. +. +...
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~---~v--~~~~~---~~~~~~~~~~~~~~~~~~-~~-g~~~ 153 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY---EV--AFGCE---DASRTDPEELLELAEALA-EA-GADI 153 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS---EE--EEEET---TTGGSSHHHHHHHHHHHH-HH-T-SE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC---ce--EeCcc---ccccccHHHHHHHHHHHH-Hc-CCeE
Confidence 566677777 6777777777777775 44 44442 234567889999999997 65 3444
Q ss_pred EEEE-eeCCCCCCChHHHHHHHHHHHHHHHHHhC-CCCCC-CEEEecCC-cCHHHHHHcCCCEEecCccccCCC
Q 029062 122 SGLM-TIGMPDYTSTPENFRTLLNCRAEVCKALG-MAEDQ-CELSMGMS-GDFEQAIEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 122 ~GLm-t~~~~~~~~~~~~f~~l~~~~~~l~~~~g-~~~~~-~~lS~Gms-~d~~~a~~~g~t~VR~Gs~ifgd~ 191 (199)
..|. |.+...+. .+.+++..+++.++ .+..+ .|...|+. .....|++.|++.|-....=+|.+
T Consensus 154 i~l~Dt~G~~~P~-------~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~ 220 (237)
T PF00682_consen 154 IYLADTVGIMTPE-------DVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGER 220 (237)
T ss_dssp EEEEETTS-S-HH-------HHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSST
T ss_pred EEeeCccCCcCHH-------HHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCC
Confidence 4443 22222211 13445555665533 21100 12233442 123366899999987666666654
No 137
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=28.17 E-value=3.5e+02 Score=22.53 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC--CCeeEEEEEeeCCCCCCChHHHHH
Q 029062 63 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLMTIGMPDYTSTPENFR 140 (199)
Q Consensus 63 Ds~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~--~~L~l~GLmt~~~~~~~~~~~~f~ 140 (199)
.+++.+..+-+...+. ..+|.+++-.+ +...+..++++.+. +. .+|.+.+.+ +. .. ...++
T Consensus 118 ~dp~~l~~iv~av~~~---~~PVsvKiR~~-------~~~~~~~~~a~~l~-~aGad~i~Vd~~~---~g--~~-~a~~~ 180 (231)
T TIGR00736 118 KNKELLKEFLTKMKEL---NKPIFVKIRGN-------CIPLDELIDALNLV-DDGFDGIHVDAMY---PG--KP-YADMD 180 (231)
T ss_pred CCHHHHHHHHHHHHcC---CCcEEEEeCCC-------CCcchHHHHHHHHH-HcCCCEEEEeeCC---CC--Cc-hhhHH
Confidence 4677777777777644 35688877665 23345667777775 43 456554211 11 11 01233
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHH---HHcCCCEEecCccccCC
Q 029062 141 TLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 141 ~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a---~~~g~t~VR~Gs~ifgd 190 (199)
.+. .+++..+ + ++.+-.|.=.+++-| .+.|++.|.+|++++..
T Consensus 181 ~I~----~i~~~~~-~--ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 181 LLK----ILSEEFN-D--KIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred HHH----HHHHhcC-C--CcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 333 3444322 1 345545544565533 57899999999998864
No 138
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=28.05 E-value=2.4e+02 Score=27.30 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=46.3
Q ss_pred cCCcHHHHHHhh-cCCCCceeeeecccchHHHHhHhccCCCccEEEec-C--cHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGV-G--NEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sV-D--s~~~a~~l~~~a~~~g~ 80 (199)
-.||+.|+.+.+ .+..++....|+..-.+.+..++ ..+|++..+ | ..+.+..++++|.+.|+
T Consensus 167 NlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~---~~~DiVi~vsDdy~~~~Lr~lN~acvkegk 232 (637)
T TIGR03693 167 ALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAF---EPADWVLYVSDNGDIDDLHALHAFCKEEGK 232 (637)
T ss_pred hhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhh---cCCcEEEEECCCCChHHHHHHHHHHHHcCC
Confidence 467788887777 76668888888875566677777 557866554 5 45679999999999885
No 139
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=27.92 E-value=72 Score=24.84 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=29.2
Q ss_pred ecCcHHHHHHHHHHHHhc---CCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 029062 61 GVGNEKIANHLDKAVSNL---GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 113 (199)
Q Consensus 61 sVDs~~~a~~l~~~a~~~---g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~ 113 (199)
+--|++.|..|.+..... +. ++.||++|++. |-+-+-+.+..-.+.
T Consensus 72 t~~S~e~A~~l~~~l~~~~~~~~-~~EiHiDIg~~------g~T~~~i~E~vG~v~ 120 (144)
T PF04308_consen 72 TSLSLEVAEKLCDLLLPYGYADV-DLEIHIDIGTN------GKTRELIKEVVGYVE 120 (144)
T ss_pred HHHHHHHHHHHHHHHHhcccCCc-cEEEEEEcCCC------CchHHHHHHHHHHHH
Confidence 345788888898888764 44 78888887773 222233345555555
No 140
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=27.64 E-value=99 Score=24.49 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHH-HHcCCCEEecCccccCCC
Q 029062 140 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA-IEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 140 ~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a-~~~g~t~VR~Gs~ifgd~ 191 (199)
+.++++.+.++.. +... ...+|.|.+.+--.. .+.|.+.+-+|+..+.-.
T Consensus 112 ~~~~~~v~~l~~~-~~~v-~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 112 EDLKEAVEELREL-NPRV-KIEASGGITLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp HHHHHHHHHHHHH-TTTS-EEEEESSSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred HHHHHHHHHHhhc-CCcE-EEEEECCCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 3455556666554 3321 356799998775433 378999999999877643
No 141
>PRK07329 hypothetical protein; Provisional
Probab=27.63 E-value=3.5e+02 Score=22.33 Aligned_cols=76 Identities=11% Similarity=0.036 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHH
Q 029062 67 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCR 146 (199)
Q Consensus 67 ~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~ 146 (199)
.++.+-+++++. ++.|||||++ ..|-+..+ ....+++..+ +.... ..|+++.+-.+ ...-..+.++.
T Consensus 166 ~~~~i~~~~~~~-----~~~lEiNt~~-~~~~~~~~-~~~~~l~~~~-~~g~~----~i~~gSDAH~~-~~vg~~~~~a~ 232 (246)
T PRK07329 166 QLTRIFAKMIDN-----DLAFELNTKS-MYLYGNEG-LYRYAIELYK-QLGGK----LFSIGSDAHKL-EHYRYNFDDAQ 232 (246)
T ss_pred HHHHHHHHHHHc-----CCeEEEECcc-cccCCCCc-chHHHHHHHH-HcCCe----EEEecCCCCCH-HHHHHHHHHHH
Confidence 344555555544 5789999975 33433322 1244455555 44321 24555432111 11112345555
Q ss_pred HHHHHHhCCC
Q 029062 147 AEVCKALGMA 156 (199)
Q Consensus 147 ~~l~~~~g~~ 156 (199)
+.+++ .|++
T Consensus 233 ~~l~~-~g~~ 241 (246)
T PRK07329 233 KLLKE-HGIK 241 (246)
T ss_pred HHHHH-cCCc
Confidence 56665 3765
No 142
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=27.38 E-value=3.1e+02 Score=22.73 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=41.1
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.++++.+.+.. .+...+....+ ..+.......+.. ..++++ .++|+...-..|++.|.+.+.
T Consensus 63 G~~Kae~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~--~~~D~VvdaiD~~~~k~~L~~~c~~~~i 128 (231)
T cd00755 63 GKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLG--GDPDFVVDAIDSIRAKVALIAYCRKRKI 128 (231)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhc--CCCCEEEEcCCCHHHHHHHHHHHHHhCC
Confidence 778888888877 66444544443 2333334444552 346755 457999998999999988765
No 143
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=27.26 E-value=2.4e+02 Score=23.73 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHhcCCCeeEEEEEeeCC
Q 029062 102 PSSCLGIVEHVRLRCPNLEFSGLMTIGM 129 (199)
Q Consensus 102 ~~~~~~l~~~i~~~~~~L~l~GLmt~~~ 129 (199)
.+++.++++... ++. ..|+|.++|
T Consensus 82 t~~~i~~a~~a~-~~G---ad~v~v~~P 105 (289)
T PF00701_consen 82 TEEAIELARHAQ-DAG---ADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHHHHH-HTT----SEEEEEES
T ss_pred HHHHHHHHHHHh-hcC---ceEEEEecc
Confidence 344444444444 332 344444444
No 144
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=27.21 E-value=2.3e+02 Score=25.41 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=35.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh----hhHHHHHHHHHhcCCCeeEEEEEe
Q 029062 63 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP----SSCLGIVEHVRLRCPNLEFSGLMT 126 (199)
Q Consensus 63 Ds~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~----~~~~~l~~~i~~~~~~L~l~GLmt 126 (199)
.+.+.+....+...+.|. +..|+|+++= ..+|=.+ .=+.++++++. ..+..+.|+|-
T Consensus 241 Y~~~~v~~a~~~l~~~~l-~~~vmVDcSH----~NS~K~~~~Q~~V~~~v~~q~~--~g~~~I~GvMi 301 (356)
T PRK12822 241 YGLSDVTKASKLLHDEGL-NHRLIIDCSH----GNSQKVAKNQISVARELCDQLK--EGEGAIAGVMV 301 (356)
T ss_pred CCHHHHHHHHHHHHHCCC-CCcEEEECCC----ccCCCCHHHHHHHHHHHHHHHH--CCCCeEEEEEE
Confidence 345666666666667776 6666655443 2455444 33456677775 35677999995
No 145
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.74 E-value=1.3e+02 Score=25.50 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=22.7
Q ss_pred CEEEecCCcCHHHH-HHcCCCEEecCccccCC
Q 029062 160 CELSMGMSGDFEQA-IEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 160 ~~lS~Gms~d~~~a-~~~g~t~VR~Gs~ifgd 190 (199)
...|.|.+.+--.. .+.|++.|-+|+..+..
T Consensus 230 i~asGGIt~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 230 LEASGGITLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 45588898775533 47899999998766654
No 146
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.31 E-value=2.7e+02 Score=24.62 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=41.4
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+|++.+.++. .+...+.+..+ ..+....+..++ +.+++++ +.|+.+.-..+++.|.+.+.
T Consensus 187 G~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~---~~~D~Vv~~~d~~~~r~~ln~~~~~~~i 251 (376)
T PRK08762 187 GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALL---QDVDVVVDGADNFPTRYLLNDACVKLGK 251 (376)
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 678888888877 55333443322 344444555566 4467665 67888877789999999886
No 147
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=25.97 E-value=3.7e+02 Score=21.99 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCC------CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHH
Q 029062 66 KIANHLDKAVSNLGRKPLKVLVQVNTSG------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENF 139 (199)
Q Consensus 66 ~~a~~l~~~a~~~g~~~i~VllqIntg~------e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f 139 (199)
.....+.+.|.+.|+ .+=+|+-...-+ ..=..|.++++....++......|+ ..|+..|-+.-.. +.-
T Consensus 32 ~~~~~~a~~a~~~G~-EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~--a~GvnNhmGS~~T---~~~ 105 (213)
T PF04748_consen 32 PYSREWAERARAAGH-EVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPG--AVGVNNHMGSRFT---SDR 105 (213)
T ss_dssp TTHHHHHHHHHHCT--EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT---SEEEEEE-CCHH---C-H
T ss_pred CChHHHHHHHHHcCC-EEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCC--cEEEecCCCcccc---CCH
Confidence 344566677778887 444444433221 1113445667776555544437786 7899887765221 222
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHHHHcCCCEEecCccccCCC
Q 029062 140 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 140 ~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~ 191 (199)
..+..+.+.|+++ |+-. ++..+.+-|--+..|-+.|.-..+. -+|=|.
T Consensus 106 ~~m~~vl~~l~~~-gl~F-vDS~T~~~s~a~~~A~~~gvp~~~r--dvfLD~ 153 (213)
T PF04748_consen 106 EAMRWVLEVLKER-GLFF-VDSRTTPRSVAPQVAKELGVPAARR--DVFLDN 153 (213)
T ss_dssp HHHHHHHHHHHHT-T-EE-EE-S--TT-SHHHHHHHCT--EEE---SEETTS
T ss_pred HHHHHHHHHHHHc-CCEE-EeCCCCcccHHHHHHHHcCCCEEee--ceecCC
Confidence 3456666777775 7632 1122444445577888889877775 445443
No 148
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.60 E-value=62 Score=25.01 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=28.0
Q ss_pred ceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEE
Q 029062 83 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 125 (199)
Q Consensus 83 i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLm 125 (199)
.+|.+=+ -|..|-+.|++|+++.++++... +=++.|++
T Consensus 86 aDvvVLl-GGLaMP~~gv~~d~~kel~ee~~----~kkliGvC 123 (154)
T COG4090 86 ADVVVLL-GGLAMPKIGVTPDDAKELLEELG----NKKLIGVC 123 (154)
T ss_pred ccEEEEE-cccccCcCCCCHHHHHHHHHhcC----CCceEEee
Confidence 4555533 36679999999999999998554 23788984
No 149
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=25.24 E-value=2e+02 Score=24.48 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=34.3
Q ss_pred EecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEE
Q 029062 60 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 125 (199)
Q Consensus 60 ~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLm 125 (199)
+-|.-.+....|-+.+.+.+. +|++ .| -.|+-+.+.++.+.+++|++++.|.+
T Consensus 89 ~rv~G~Dl~~~Ll~~a~~~~~---~vfl---lG-------gkp~V~~~a~~~l~~~~p~l~ivg~h 141 (253)
T COG1922 89 ERVAGTDLVEALLKRAAEEGK---RVFL---LG-------GKPGVAEQAAAKLRAKYPGLKIVGSH 141 (253)
T ss_pred ccCChHHHHHHHHHHhCccCc---eEEE---ec-------CCHHHHHHHHHHHHHHCCCceEEEec
Confidence 456667777777776665543 5666 34 24444555556665479999999886
No 150
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=25.11 E-value=4.2e+02 Score=23.20 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=55.0
Q ss_pred hHHHHhHhccCCCccE--EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCee
Q 029062 43 SNKAKTLLGGVPNLDM--VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 120 (199)
Q Consensus 43 ~~ki~~l~~~~~~~~~--i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~ 120 (199)
.+++..+.+ ..+|+ ..|+-+...++++-+..++.++ |.-+-.-+|.+. .-|.|-+. .+.+..+. .+|++-
T Consensus 137 ~~rie~l~~--ag~Dlla~ETip~i~Ea~Aiv~l~~~~s~-p~wISfT~~d~~-~lr~Gt~l---~eaa~~~~-~~~~ia 208 (300)
T COG2040 137 RPRIEALNE--AGADLLACETLPNITEAEAIVQLVQEFSK-PAWISFTLNDDT-RLRDGTPL---SEAAAILA-GLPNIA 208 (300)
T ss_pred HHHHHHHHh--CCCcEEeecccCChHHHHHHHHHHHHhCC-ceEEEEEeCCCC-ccCCCccH---HHHHHHHh-cCcchh
Confidence 356766664 33665 4889999999999999988876 766666666543 45777554 44555566 888999
Q ss_pred EEEE-EeeC
Q 029062 121 FSGL-MTIG 128 (199)
Q Consensus 121 l~GL-mt~~ 128 (199)
..|+ ++++
T Consensus 209 a~gvNC~~p 217 (300)
T COG2040 209 ALGVNCCHP 217 (300)
T ss_pred heeeccCCh
Confidence 9999 4444
No 151
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.04 E-value=2.5e+02 Score=25.15 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh----hhHHHHHHHHHhcCCCeeEEEEEe
Q 029062 64 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP----SSCLGIVEHVRLRCPNLEFSGLMT 126 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~----~~~~~l~~~i~~~~~~L~l~GLmt 126 (199)
+.+.+....+..++.|. +..|+|+ ++ ...+|=.+ .=+.++++++. ..+..+.|+|-
T Consensus 241 ~~~~v~~a~~~l~~~~l-~~~imVD--cS--H~NS~K~~~~Q~~V~~~v~~qi~--~g~~~I~GvMi 300 (348)
T PRK12756 241 HAEDIAAACDTLREFDL-PEHLVVD--FS--HGNCQKQHRRQLDVAEDICQQIR--NGSTAIAGIMA 300 (348)
T ss_pred CHHHHHHHHHHHHHCCC-CCcEEEE--CC--CcccCCCHHHHHHHHHHHHHHHH--cCCCeEEEEEE
Confidence 34555555555666666 6555544 44 23455544 23456666665 34577888885
No 152
>PLN02591 tryptophan synthase
Probab=24.99 E-value=2.2e+02 Score=24.09 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=23.3
Q ss_pred ccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC
Q 029062 97 KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 130 (199)
Q Consensus 97 R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~ 130 (199)
+.|+..++..++++.++ ..+.+-+. ||+|.-.
T Consensus 58 ~~G~~~~~~~~~~~~~r-~~~~~p~i-lm~Y~N~ 89 (250)
T PLN02591 58 EKGTTLDSVISMLKEVA-PQLSCPIV-LFTYYNP 89 (250)
T ss_pred HcCCCHHHHHHHHHHHh-cCCCCCEE-EEecccH
Confidence 46778888888888887 55556554 8998653
No 153
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.87 E-value=4.1e+02 Score=22.13 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=65.9
Q ss_pred ccchHHHHhHhcc-CCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC
Q 029062 40 HLQSNKAKTLLGG-VPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 118 (199)
Q Consensus 40 ~lq~~ki~~l~~~-~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~ 118 (199)
......+..+.+. ...+++..++.....+...-+.+++.|. . |.+.+-.. +-.+|+.+.++++.+. +..
T Consensus 85 ~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~-~--v~~~~~~~-----~~~~~~~~~~~~~~~~-~~G- 154 (263)
T cd07943 85 IGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGM-D--VVGFLMMS-----HMASPEELAEQAKLME-SYG- 154 (263)
T ss_pred ccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCC-e--EEEEEEec-----cCCCHHHHHHHHHHHH-HcC-
Confidence 3334566666542 1123344555555666777777777775 3 33333111 2367888999999887 653
Q ss_pred eeEEEEE-eeCCCCCCChHHHHHHHHHHHHHHHHHhCC-CCCC-CEEEecCCcC-HHHHHHcCCCEEecCccccCC
Q 029062 119 LEFSGLM-TIGMPDYTSTPENFRTLLNCRAEVCKALGM-AEDQ-CELSMGMSGD-FEQAIEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 119 L~l~GLm-t~~~~~~~~~~~~f~~l~~~~~~l~~~~g~-~~~~-~~lS~Gms~d-~~~a~~~g~t~VR~Gs~ifgd 190 (199)
.....|- |.+.. ...+ +.+++..+++..+. +... .|...||.-- ...|++.|++.|-.-..=+|.
T Consensus 155 ~d~i~l~DT~G~~----~P~~---v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~ 223 (263)
T cd07943 155 ADCVYVTDSAGAM----LPDD---VRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA 223 (263)
T ss_pred CCEEEEcCCCCCc----CHHH---HHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccC
Confidence 3332221 11111 1222 33344444444332 1100 2335555322 235678999876544443333
No 154
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=24.80 E-value=4.1e+02 Score=23.55 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCEEEecCCcC-HH----HHHHcCC--CEEecCccccCCCc
Q 029062 159 QCELSMGMSGD-FE----QAIEMGS--TSVRIGSTIFGPRE 192 (199)
Q Consensus 159 ~~~lS~Gms~d-~~----~a~~~g~--t~VR~Gs~ifgd~~ 192 (199)
+..+|.|.|.+ |. .|.+.|+ .=|=+|..+|.+..
T Consensus 244 ~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 244 FIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHhhhh
Confidence 56779998654 22 4568889 89999999998653
No 155
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.69 E-value=3e+02 Score=24.31 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=42.0
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
|.+|++.+.++. .+...+....+ ..+.......++ ..+|++ -+.|+.+.-..++++|.+.++
T Consensus 80 G~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~---~~~DvVvd~~d~~~~r~~~n~~c~~~~i 144 (355)
T PRK05597 80 GQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDEL---RDADVILDGSDNFDTRHLASWAAARLGI 144 (355)
T ss_pred CChHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 678898888888 66444444433 344444445566 346755 556899888889999998775
No 156
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=24.39 E-value=4.5e+02 Score=22.51 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=56.0
Q ss_pred CcHHHHHHHHHHHHhcCCCCceEEEEEeC---CCCC-C--ccCC---ChhhHHHHHHHHHhcCCCeeEEEE--EeeCCCC
Q 029062 63 GNEKIANHLDKAVSNLGRKPLKVLVQVNT---SGEE-S--KSGI---DPSSCLGIVEHVRLRCPNLEFSGL--MTIGMPD 131 (199)
Q Consensus 63 Ds~~~a~~l~~~a~~~g~~~i~VllqInt---g~e~-~--R~Gv---~~~~~~~l~~~i~~~~~~L~l~GL--mt~~~~~ 131 (199)
++++.++++.+.|.+.|. + ++.+. |+.. . -.|. +|+++.++++. .+..+-++ =+..+.-
T Consensus 112 eni~~t~~v~~~a~~~gv-~----veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~-----tg~DyLAvaiG~~hg~~ 181 (281)
T PRK06806 112 ENIQKTKEIVELAKQYGA-T----VEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEE-----TDVDALAVAIGNAHGMY 181 (281)
T ss_pred HHHHHHHHHHHHHHHcCC-e----EEEEeeeECCccCCcccccceeCCHHHHHHHHHh-----hCCCEEEEccCCCCCCC
Confidence 345566777777777765 4 34442 2111 0 1243 34554444432 23455555 3322221
Q ss_pred CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc---C-HHHHHHcCCCEEecCccccCC
Q 029062 132 YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG---D-FEQAIEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 132 ~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~---d-~~~a~~~g~t~VR~Gs~ifgd 190 (199)
.....-.|+.++++.+.+ ++ +.+--|+|+ + ...+++.|++-|=++|.|+.+
T Consensus 182 ~~~~~l~~~~L~~i~~~~----~i----PlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~a 236 (281)
T PRK06806 182 NGDPNLRFDRLQEINDVV----HI----PLVLHGGSGISPEDFKKCIQHGIRKINVATATFNS 236 (281)
T ss_pred CCCCccCHHHHHHHHHhc----CC----CEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHHH
Confidence 121223466665554432 33 334445443 2 335578999999999999874
No 157
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=24.14 E-value=88 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=21.7
Q ss_pred cCCcHHHHHHhhcCCCCceeeeeccc
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHL 41 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~l 41 (199)
++|++.|...+++.+++++.|+=|-.
T Consensus 1 ~~nkv~~~Qk~FQ~~ng~PV~LKGG~ 26 (55)
T cd00928 1 GKNKVKELQKKFQADDGLPVHLKGGV 26 (55)
T ss_pred CcchhHHHHHHhcCCCCceEEecCCc
Confidence 47999999998877888999988763
No 158
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=23.94 E-value=4e+02 Score=23.08 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=29.6
Q ss_pred eEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCC
Q 029062 84 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD 131 (199)
Q Consensus 84 ~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~ 131 (199)
+|.|..|+|. |-..+++.+++-.+. .|.+++.|+-|..+..
T Consensus 1 kvIiDtD~G~-----~~d~DDa~Al~lal~--~p~~el~gIt~v~GN~ 41 (318)
T cd02654 1 KVILDNDIAM-----GRDTDDGLALALLLW--SPEVELLGLSAVSGNC 41 (318)
T ss_pred CEEEEcCCCC-----CCCccHHHHHHHHhh--CCCceEEEEEEecCCC
Confidence 3677777762 234578888876664 6899999998887764
No 159
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=23.90 E-value=3.7e+02 Score=23.66 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=41.4
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+++..+.++. .+...+....+ ..+....+..++ ..+|+++ +.|+.+.-..+++.|.+.++
T Consensus 78 g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~---~~~DlVid~~Dn~~~r~~ln~~~~~~~i 142 (339)
T PRK07688 78 NLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELV---TGVDLIIDATDNFETRFIVNDAAQKYGI 142 (339)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHH---cCCCEEEEcCCCHHHHHHHHHHHHHhCC
Confidence 557777777776 66444444433 344445566666 4467655 56999999999999998875
No 160
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=23.75 E-value=3.5e+02 Score=23.77 Aligned_cols=62 Identities=8% Similarity=0.135 Sum_probs=42.1
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.++++.+.++. .+..++..+.+ ..+....+..++ ..+|+ +.+.|+.+.-..+++.|.+.+.
T Consensus 78 g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~---~~~DlVid~~D~~~~r~~in~~~~~~~i 142 (338)
T PRK12475 78 KKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV---KEVDLIIDATDNFDTRLLINDLSQKYNI 142 (338)
T ss_pred CccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh---cCCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 467888887777 66444544433 344445566666 45665 4567999988899999998875
No 161
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=23.66 E-value=5e+02 Score=22.73 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHh-cCCCCceEEEEEeCCCCCCc--cCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHH
Q 029062 64 NEKIANHLDKAVSN-LGRKPLKVLVQVNTSGEESK--SGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFR 140 (199)
Q Consensus 64 s~~~a~~l~~~a~~-~g~~~i~VllqIntg~e~~R--~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~ 140 (199)
+.+.+.++-++.++ .|. . .|.++++...-.+. .|.++++..++++.+. +. ++.+.-+ +++...... ...
T Consensus 201 R~rf~~eii~air~~vg~-d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~-~~-g~d~i~v-s~g~~~~~~-~~~-- 272 (338)
T cd02933 201 RARFLLEVVDAVAEAIGA-D-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELN-KR-GLAYLHL-VEPRVAGNP-EDQ-- 272 (338)
T ss_pred hhhHHHHHHHHHHHHhCC-C-ceEEEECccccCCCCCCCCCHHHHHHHHHHHH-Hc-CCcEEEE-ecCCCCCcc-ccc--
Confidence 34444444444333 354 3 48888876522211 2567788889998886 54 2332222 222211111 111
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEecCCcCHH-HHHHcC-CCEEecCccccCCCccc
Q 029062 141 TLLNCRAEVCKALGMAEDQCELSMGMSGDFE-QAIEMG-STSVRIGSTIFGPREYA 194 (199)
Q Consensus 141 ~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~-~a~~~g-~t~VR~Gs~ifgd~~~~ 194 (199)
...+.+.+++..+++ ..++.|.+++.. .++++| +++|-.|..+..|..-.
T Consensus 273 -~~~~~~~ik~~~~ip---vi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~ 324 (338)
T cd02933 273 -PPDFLDFLRKAFKGP---LIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLV 324 (338)
T ss_pred -chHHHHHHHHHcCCC---EEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHH
Confidence 233344455543332 344666653222 335665 89999999998876543
No 162
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=23.31 E-value=4.1e+02 Score=25.29 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=21.2
Q ss_pred cCCChhhHHHHHHHHHhcCCCeeEEEE-EeeCCC
Q 029062 98 SGIDPSSCLGIVEHVRLRCPNLEFSGL-MTIGMP 130 (199)
Q Consensus 98 ~Gv~~~~~~~l~~~i~~~~~~L~l~GL-mt~~~~ 130 (199)
-|-+|+++..+.+.+. ....-.+.|+ ++.+|.
T Consensus 118 eGe~Pdna~~F~~~L~-~~~~~~L~~~~~aVfGL 150 (597)
T TIGR01931 118 EGEPPEEAISFHKFLH-SKKAPKLENLRYSVLGL 150 (597)
T ss_pred CCcCCHHHHHHHHHHH-hCCCcccCCCeEEEEeC
Confidence 4778899999999886 4322345565 555554
No 163
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=23.21 E-value=1.3e+02 Score=28.18 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=41.6
Q ss_pred ceeeeec----ccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 33 IKWHFVG----HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 33 i~~h~IG----~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
..||++. |+++-+...+.+. +.+...| |.+.+.+..+-+.|+-.| ++|+.|+|+-+
T Consensus 215 lHWHivDs~SFPle~~~~PeL~~k-GaYs~~~-vYT~eDv~evV~yarlRG---IRVlpEfD~Pg 274 (542)
T KOG2499|consen 215 LHWHIVDSQSFPLESPTFPELHRK-GAYSPRH-VYTREDVSEVVEYARLRG---IRVLPEFDTPG 274 (542)
T ss_pred eEEEeecCCCCccccCCchhhhhc-CCCCcce-eecHHHHHHHHHHHHhcc---ceeeecccCCc
Confidence 6899986 5777788877643 3344333 788888888888888887 58999999743
No 164
>PRK06740 histidinol-phosphatase; Validated
Probab=22.61 E-value=5.2e+02 Score=22.58 Aligned_cols=74 Identities=5% Similarity=0.032 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHhcCCCeeEEEEEeeCCC--CCCChHHHHHHHH
Q 029062 67 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFRTLL 143 (199)
Q Consensus 67 ~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~-~~~~~~l~~~i~~~~~~L~l~GLmt~~~~--~~~~~~~~f~~l~ 143 (199)
..+++.+++.+. ++.|||||+.. -|-+.. +-.-..+++.++ +. |+. .|+++. .++..-..| .
T Consensus 240 ~~~~I~~a~~~~-----g~~lEINt~~~-~r~~~~e~yP~~~il~~~~-e~-Gv~----~tlgSDAH~p~~VG~~~---~ 304 (331)
T PRK06740 240 YYKEIARALVET-----NTATEINAGLY-YRYPVREMCPSPLFLQVLA-KH-EVP----ITLSSDAHYPNDLGKYV---E 304 (331)
T ss_pred HHHHHHHHHHHc-----CCEEEEECccc-cCCCCCCCCcCHHHHHHHH-HC-CCe----EEEeeCCCCHHHHHhHH---H
Confidence 555555666554 47899999731 233432 112245666666 55 344 345442 222222222 3
Q ss_pred HHHHHHHHHhCCC
Q 029062 144 NCRAEVCKALGMA 156 (199)
Q Consensus 144 ~~~~~l~~~~g~~ 156 (199)
++.+.+++ .|+.
T Consensus 305 ~a~~~l~~-~G~~ 316 (331)
T PRK06740 305 ENVKTLRN-HGVT 316 (331)
T ss_pred HHHHHHHH-cCCc
Confidence 44556665 4875
No 165
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=22.49 E-value=2.1e+02 Score=24.98 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=13.9
Q ss_pred ChhhHHHHHHHHHhcCCCeeEEEE
Q 029062 101 DPSSCLGIVEHVRLRCPNLEFSGL 124 (199)
Q Consensus 101 ~~~~~~~l~~~i~~~~~~L~l~GL 124 (199)
+++++.++++.+. .+ +++---+
T Consensus 249 n~~~l~~L~~~l~-~~-gv~pyyl 270 (321)
T TIGR03821 249 NADTLAALSERLF-DA-GVLPYYL 270 (321)
T ss_pred CHHHHHHHHHHHH-Hc-CCeeCcc
Confidence 4677888888886 54 4444334
No 166
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=22.25 E-value=4.2e+02 Score=22.58 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEE
Q 029062 44 NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 123 (199)
Q Consensus 44 ~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~G 123 (199)
-|-.+++ ..++++.=.+|+-.-+.|+........ +|+. +.+.+++.++..... . .+-.+.=
T Consensus 20 vkg~~ll---~~advviYAGSLV~~elL~~~~~~aei--------~nSa------~~tLeeIi~~m~~a~-~-~Gk~VvR 80 (254)
T COG2875 20 VKGQRLL---EKADVVIYAGSLVPPELLEYCRPDAEI--------VNSA------SLTLEEIIDLMVDAV-R-EGKDVVR 80 (254)
T ss_pred ehHHHHH---hhCCEEEECCCcCCHHHHhhcCCCCEE--------EecC------cCCHHHHHHHHHHHH-H-cCCeEEE
Confidence 3555566 346777666666544444432222111 4554 345566555544333 1 3455555
Q ss_pred EEe
Q 029062 124 LMT 126 (199)
Q Consensus 124 Lmt 126 (199)
|++
T Consensus 81 LhS 83 (254)
T COG2875 81 LHS 83 (254)
T ss_pred eec
Confidence 543
No 167
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.06 E-value=3.6e+02 Score=24.72 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCcccc
Q 029062 136 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIF 188 (199)
Q Consensus 136 ~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~if 188 (199)
..-+..+.++++.+...+|+...++.+-+|+-.|.. .|...|++-|..||.--
T Consensus 197 ~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl 252 (418)
T cd04742 197 SVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ 252 (418)
T ss_pred HhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence 345556666666665555665446777777777765 33578999999999643
No 168
>PRK08444 hypothetical protein; Provisional
Probab=22.03 E-value=3.8e+02 Score=23.77 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEE
Q 029062 64 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 123 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~G 123 (199)
|.+.+.+..+.+.+.|. -.++|+ +|..+. ...+...++++.|++.+|++.+.+
T Consensus 81 s~eeI~~~a~~a~~~G~--~ei~iv--~G~~p~---~~~e~y~e~ir~Ik~~~p~i~i~a 133 (353)
T PRK08444 81 SHEEILEIVKNSVKRGI--KEVHIV--SAHNPN---YGYEWYLEIFKKIKEAYPNLHVKA 133 (353)
T ss_pred CHHHHHHHHHHHHHCCC--CEEEEe--ccCCCC---CCHHHHHHHHHHHHHHCCCceEee
Confidence 55666666666667775 478887 553222 244677889999984579888875
No 169
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=21.77 E-value=5.8e+02 Score=22.77 Aligned_cols=88 Identities=15% Similarity=0.217 Sum_probs=49.1
Q ss_pred CceEEEEEeCCCCCCccCCChhhH------HHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCC
Q 029062 82 PLKVLVQVNTSGEESKSGIDPSSC------LGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGM 155 (199)
Q Consensus 82 ~i~VllqIntg~e~~R~Gv~~~~~------~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~ 155 (199)
.+.+|+|.--- .+.|-|..+++. .++-+.+. ..++ ..-+||++|--+. . .++.+.+.++ |+
T Consensus 125 ~lG~HlEGPfi-~~~~~Gah~~~~i~~p~~~~~~~~~~-~~~~--~i~~vTlAPE~~~-~-------~~~i~~l~~~-gi 191 (380)
T TIGR00221 125 ALGLHLEGPFL-SPEKKGAHPPEYIREPDVELFKKFLC-EAGG--VITKVTLAPEEDQ-H-------FELIRHLKDA-GI 191 (380)
T ss_pred eeeEeeecCcC-ChhhcCCCCHHHhhCcCHHHHHHHHH-hcCC--CEEEEEECCCCCC-h-------HHHHHHHHHC-Ce
Confidence 57899998532 256888866443 33333343 4443 2337999874211 1 2334455554 75
Q ss_pred CCCCCEEEecCCc-CHH---HHHHcCCCEEecCccccCC
Q 029062 156 AEDQCELSMGMSG-DFE---QAIEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 156 ~~~~~~lS~Gms~-d~~---~a~~~g~t~VR~Gs~ifgd 190 (199)
.+|+|=|+ ||+ .|++.|++.+ |=+|+-
T Consensus 192 -----~vs~GHs~A~~~~~~~a~~~Ga~~~---THlfNa 222 (380)
T TIGR00221 192 -----IVSAGHTNATYELAKAAFKAGATHA---THLYNA 222 (380)
T ss_pred -----EEEeeCCCCCHHHHHHHHHcCCCee---eeeccC
Confidence 37888664 354 4467787543 444443
No 170
>PRK07411 hypothetical protein; Validated
Probab=21.73 E-value=3.8e+02 Score=24.00 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=43.1
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEE-EecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i-~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+++.-+.++. .+...+....+ ..+.......++ ..+|++ -+.|+.+.-..|+++|.+.++
T Consensus 90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~---~~~D~Vvd~~d~~~~r~~ln~~~~~~~~ 154 (390)
T PRK07411 90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDIL---APYDVVVDGTDNFPTRYLVNDACVLLNK 154 (390)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 778888888888 66444444443 345444555566 446755 456999999999999988875
No 171
>PRK08328 hypothetical protein; Provisional
Probab=21.72 E-value=4.2e+02 Score=21.73 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=28.3
Q ss_pred cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhcCC
Q 029062 39 GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 39 G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+....+..++ +.+++++ ++|+.+.-..+++.|.+.+.
T Consensus 105 ~~~~~~~~~~~l---~~~D~Vid~~d~~~~r~~l~~~~~~~~i 144 (231)
T PRK08328 105 GRLSEENIDEVL---KGVDVIVDCLDNFETRYLLDDYAHKKGI 144 (231)
T ss_pred ccCCHHHHHHHH---hcCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 445445566566 4577665 68999988899999998886
No 172
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.43 E-value=3.9e+02 Score=22.57 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=12.5
Q ss_pred ccEEEec--CcHHHHHHHHHHHHhcC
Q 029062 56 LDMVEGV--GNEKIANHLDKAVSNLG 79 (199)
Q Consensus 56 ~~~i~sV--Ds~~~a~~l~~~a~~~g 79 (199)
..++..+ .|.+.+.++.+.|++.|
T Consensus 71 ~~viagv~~~~~~~ai~~a~~a~~~G 96 (288)
T cd00954 71 VTLIAHVGSLNLKESQELAKHAEELG 96 (288)
T ss_pred CeEEeccCCCCHHHHHHHHHHHHHcC
Confidence 3344444 24555555566666555
No 173
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.20 E-value=2.2e+02 Score=24.15 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=23.7
Q ss_pred ccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCC
Q 029062 97 KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM 129 (199)
Q Consensus 97 R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~ 129 (199)
+.|+..++..++++.++ +.+.+-+. ||+|.-
T Consensus 71 ~~g~~~~~~~~~~~~~r-~~~~~p~v-lm~Y~N 101 (263)
T CHL00200 71 KQGINLNKILSILSEVN-GEIKAPIV-IFTYYN 101 (263)
T ss_pred HcCCCHHHHHHHHHHHh-cCCCCCEE-EEeccc
Confidence 56788888888999887 65666654 899874
No 174
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=20.50 E-value=4.1e+02 Score=24.61 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCcccc
Q 029062 137 ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIF 188 (199)
Q Consensus 137 ~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~if 188 (199)
.-+..+.++++.+.+.++.+.+++.+-+|+-+|.. .|...|++-|..||..-
T Consensus 203 ~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 203 VLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred HHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 34445555566665555665546678888777765 33578999999999654
No 175
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.26 E-value=3.6e+02 Score=23.37 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=16.3
Q ss_pred ChhhHHHHHHHHHhcCCCeeEEEEEee
Q 029062 101 DPSSCLGIVEHVRLRCPNLEFSGLMTI 127 (199)
Q Consensus 101 ~~~~~~~l~~~i~~~~~~L~l~GLmt~ 127 (199)
+++++.++.+.+. ++ ++.---++..
T Consensus 243 ~~~~l~~l~~~l~-~~-gv~pyyl~~~ 267 (321)
T TIGR03822 243 DPETLAALMRAFV-EC-RIKPYYLHHL 267 (321)
T ss_pred CHHHHHHHHHHHH-hc-CCeeEEEEec
Confidence 4577888888887 55 4665555443
No 176
>PRK07328 histidinol-phosphatase; Provisional
Probab=20.25 E-value=4.6e+02 Score=21.86 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHH
Q 029062 66 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLN 144 (199)
Q Consensus 66 ~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~-~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~ 144 (199)
+..+++-+++.+.| +.|||||++ . |-|.. +-....+++..+ ++ ++. .|+++.+-.+ ...-..+.+
T Consensus 177 ~~~~~il~~~~~~g-----~~lEiNt~~-~-r~~~~~~yp~~~il~~~~-~~-g~~----itigSDAH~~-~~vg~~~~~ 242 (269)
T PRK07328 177 ELYEEALDVIAAAG-----LALEVNTAG-L-RKPVGEIYPSPALLRACR-ER-GIP----VVLGSDAHRP-EEVGFGFAE 242 (269)
T ss_pred HHHHHHHHHHHHcC-----CEEEEEchh-h-cCCCCCCCCCHHHHHHHH-Hc-CCC----EEEeCCCCCH-HHHhccHHH
Confidence 34456666666554 689999984 2 43432 222345566665 55 233 3565432111 111123445
Q ss_pred HHHHHHHHhCCC
Q 029062 145 CRAEVCKALGMA 156 (199)
Q Consensus 145 ~~~~l~~~~g~~ 156 (199)
+.+.+++ .|++
T Consensus 243 a~~~l~~-~G~~ 253 (269)
T PRK07328 243 ALALLKE-VGYT 253 (269)
T ss_pred HHHHHHH-cCCc
Confidence 5555665 3775
No 177
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=20.20 E-value=5.4e+02 Score=22.09 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=42.3
Q ss_pred EEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC-CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEee
Q 029062 58 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 127 (199)
Q Consensus 58 ~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~-e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~ 127 (199)
+..|+-+++.++.+-+++++... .++|++.+.... ..-+.|-++ .+.++.+. +.+.+...|+-|-
T Consensus 158 ~~ET~~~~~E~~~~~~~~~~~~~-~~pv~is~~~~~~g~l~~G~~~---~~~~~~l~-~~~~~~~iGiNC~ 223 (304)
T PRK09485 158 ACETIPNLDEAEALVELLKEEFP-GVPAWLSFTLRDGTHISDGTPL---AEAAALLA-ASPQVVAVGVNCT 223 (304)
T ss_pred EEeccCCHHHHHHHHHHHHHhcC-CCcEEEEEEeCCCCcCCCCCCH---HHHHHHHh-cCCCceEEEecCC
Confidence 46789999999999998886522 345666665421 133566654 44555555 5666778888554
No 178
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=20.08 E-value=4.2e+02 Score=22.52 Aligned_cols=16 Identities=44% Similarity=0.424 Sum_probs=8.1
Q ss_pred cHHHHHHHHHHHHhcC
Q 029062 64 NEKIANHLDKAVSNLG 79 (199)
Q Consensus 64 s~~~a~~l~~~a~~~g 79 (199)
|.+.+.++.+.+++.|
T Consensus 81 ~t~~~i~la~~a~~~G 96 (290)
T TIGR00683 81 NLKEAVELGKYATELG 96 (290)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 4444455555555554
No 179
>PHA02104 hypothetical protein
Probab=20.01 E-value=57 Score=22.43 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=13.8
Q ss_pred HcCCCEEecCccccCCC
Q 029062 175 EMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 175 ~~g~t~VR~Gs~ifgd~ 191 (199)
-+|.++||+|+.-|...
T Consensus 40 fp~i~ev~ig~s~yfa~ 56 (89)
T PHA02104 40 FPGITEVRIGSSTYFAQ 56 (89)
T ss_pred cCCcEEEEecceeeehh
Confidence 36999999999887643
Done!