Query 029062
Match_columns 199
No_of_seqs 168 out of 1165
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sy1_A UPF0001 protein YGGS; e 100.0 2.2E-47 7.7E-52 319.8 15.7 182 7-196 42-235 (245)
2 3r79_A Uncharacterized protein 100.0 2.1E-45 7E-50 307.6 14.5 175 7-195 43-226 (244)
3 1ct5_A Protein (yeast hypothet 100.0 2.4E-43 8.3E-48 297.0 18.4 188 7-198 53-254 (256)
4 3cpg_A Uncharacterized protein 100.0 2.3E-35 7.9E-40 251.0 18.6 177 16-197 76-277 (282)
5 3gwq_A D-serine deaminase; str 100.0 1.3E-29 4.5E-34 226.8 17.2 169 16-192 99-286 (426)
6 1vfs_A Alanine racemase; TIM-b 99.9 3.8E-26 1.3E-30 201.5 16.9 166 16-194 62-236 (386)
7 1xfc_A Alanine racemase; alpha 99.9 3.8E-26 1.3E-30 201.2 15.7 166 16-194 66-240 (384)
8 4ecl_A Serine racemase, vantg; 99.9 4.6E-26 1.6E-30 200.8 16.2 163 16-194 62-231 (374)
9 2vd8_A Alanine racemase; pyrid 99.9 5.7E-25 1.9E-29 194.3 15.6 164 16-193 67-237 (391)
10 1rcq_A Catabolic alanine racem 99.9 3.3E-25 1.1E-29 193.4 13.5 159 16-194 56-220 (357)
11 3llx_A Predicted amino acid al 99.9 4E-25 1.4E-29 194.4 13.2 165 16-194 67-246 (376)
12 2rjg_A Alanine racemase; alpha 99.9 5.7E-25 1.9E-29 193.8 12.1 159 16-194 76-241 (379)
13 1bd0_A Alanine racemase; isome 99.9 2.2E-24 7.7E-29 190.5 15.2 165 16-193 63-230 (388)
14 2dy3_A Alanine racemase; alpha 99.9 1.1E-24 3.7E-29 190.2 12.5 165 16-194 58-226 (361)
15 3e5p_A Alanine racemase; ALR, 99.9 6.3E-25 2.1E-29 193.4 10.3 165 16-194 64-234 (371)
16 3mub_A Alanine racemase; alpha 99.9 2.3E-24 8E-29 189.5 13.4 163 16-194 63-230 (367)
17 4a3q_A Alanine racemase 1; iso 99.9 8.6E-24 2.9E-28 186.9 13.5 164 16-193 63-230 (382)
18 3kw3_A Alanine racemase; niaid 99.9 2.4E-24 8.2E-29 190.1 9.7 163 16-194 75-242 (376)
19 3co8_A Alanine racemase; prote 99.9 2.8E-23 9.6E-28 182.8 14.0 160 16-194 64-234 (380)
20 3anu_A D-serine dehydratase; P 99.9 5.5E-23 1.9E-27 180.0 10.0 168 16-193 65-250 (376)
21 3hur_A Alanine racemase; struc 99.9 1E-22 3.5E-27 180.7 9.5 161 16-194 65-236 (395)
22 2p3e_A Diaminopimelate decarbo 99.8 3.3E-20 1.1E-24 164.6 11.6 168 16-192 84-276 (420)
23 2j66_A BTRK, decarboxylase; bu 99.7 3.2E-16 1.1E-20 139.3 15.5 140 19-167 71-228 (428)
24 1twi_A Diaminopimelate decarbo 99.7 5.4E-16 1.8E-20 138.1 15.0 140 18-167 90-250 (434)
25 2qgh_A Diaminopimelate decarbo 99.7 1.6E-15 5.6E-20 134.9 15.0 140 18-167 87-245 (425)
26 2o0t_A Diaminopimelate decarbo 99.6 1E-14 3.6E-19 131.4 13.9 139 19-166 96-259 (467)
27 3vab_A Diaminopimelate decarbo 99.5 2.8E-13 9.7E-18 121.4 15.1 139 18-166 103-260 (443)
28 3n2b_A Diaminopimelate decarbo 99.5 3.1E-13 1.1E-17 121.1 14.1 139 18-166 106-263 (441)
29 2plj_A Lysine/ornithine decarb 99.4 3.6E-13 1.2E-17 119.9 8.6 159 18-190 107-283 (419)
30 2nva_A Arginine decarboxylase, 99.4 2.7E-13 9.2E-18 118.4 7.4 136 18-167 69-216 (372)
31 1f3t_A ODC, ornithine decarbox 99.2 2.2E-11 7.7E-16 108.3 10.2 133 18-165 90-235 (425)
32 3btn_A Antizyme inhibitor 1; T 99.2 5.2E-11 1.8E-15 106.8 9.9 135 18-167 90-238 (448)
33 3n2o_A ADC, biosynthetic argin 99.2 5.1E-10 1.7E-14 104.5 15.1 144 18-166 133-294 (648)
34 2yxx_A Diaminopimelate decarbo 99.2 9.8E-11 3.3E-15 102.6 9.6 119 18-149 67-204 (386)
35 3nzq_A ADC, biosynthetic argin 99.1 4.4E-10 1.5E-14 105.2 13.8 144 18-166 150-311 (666)
36 3nzp_A Arginine decarboxylase; 99.1 8.5E-10 2.9E-14 102.6 15.0 141 18-166 111-273 (619)
37 2oo0_A ODC, ornithine decarbox 99.1 1.4E-09 4.8E-14 98.1 15.5 134 18-166 100-246 (471)
38 7odc_A Protein (ornithine deca 99.1 9.8E-10 3.4E-14 97.8 14.2 135 18-166 90-236 (424)
39 1knw_A Diaminopimelate decarbo 99.1 7.1E-10 2.4E-14 98.6 10.9 131 18-165 75-225 (425)
40 3mt1_A Putative carboxynorsper 98.1 4.4E-06 1.5E-10 72.7 7.5 152 19-192 59-240 (365)
41 3n29_A Carboxynorspermidine de 98.1 8.3E-06 2.9E-10 72.4 9.0 151 19-192 99-279 (418)
42 3inp_A D-ribulose-phosphate 3- 89.5 1.2 4.1E-05 36.4 7.6 73 119-193 157-232 (246)
43 3ctl_A D-allulose-6-phosphate 86.5 1.9 6.6E-05 34.7 7.0 140 32-192 59-204 (231)
44 1tqj_A Ribulose-phosphate 3-ep 83.5 4.6 0.00016 32.2 7.9 73 118-192 134-209 (230)
45 3cu2_A Ribulose-5-phosphate 3- 83.3 1.3 4.5E-05 35.9 4.6 72 117-190 147-223 (237)
46 3kru_A NADH:flavin oxidoreduct 74.1 14 0.00047 31.4 8.4 115 66-192 194-315 (343)
47 3hgj_A Chromate reductase; TIM 73.2 25 0.00086 29.6 9.8 112 70-192 208-326 (349)
48 1tqx_A D-ribulose-5-phosphate 71.4 2 7E-05 34.5 2.4 99 74-193 109-210 (227)
49 3gr7_A NADPH dehydrogenase; fl 60.9 64 0.0022 27.0 9.9 100 82-192 209-315 (340)
50 1h1y_A D-ribulose-5-phosphate 59.3 18 0.00063 28.3 5.9 68 118-192 138-209 (228)
51 3l5l_A Xenobiotic reductase A; 57.7 30 0.001 29.3 7.3 116 66-192 209-333 (363)
52 3i65_A Dihydroorotate dehydrog 57.3 46 0.0016 29.1 8.5 96 82-190 268-380 (415)
53 1z41_A YQJM, probable NADH-dep 55.2 60 0.002 27.1 8.7 100 82-192 209-315 (338)
54 3ovp_A Ribulose-phosphate 3-ep 54.2 36 0.0012 26.9 6.8 34 160-193 172-206 (228)
55 3epw_A IAG-nucleoside hydrolas 52.0 98 0.0033 25.9 9.5 58 78-149 10-68 (338)
56 1geq_A Tryptophan synthase alp 49.3 91 0.0031 24.2 9.1 134 32-190 80-226 (248)
57 2qjg_A Putative aldolase MJ040 48.8 98 0.0033 24.5 12.0 124 44-191 103-244 (273)
58 1zud_1 Adenylyltransferase THI 48.7 36 0.0012 27.1 6.0 62 16-80 80-144 (251)
59 1to3_A Putative aldolase YIHT; 46.6 1.2E+02 0.0042 24.9 9.8 110 66-190 142-260 (304)
60 1f76_A Dihydroorotate dehydrog 42.9 1.4E+02 0.0047 24.5 10.8 97 79-189 209-323 (336)
61 3zwt_A Dihydroorotate dehydrog 40.7 1.7E+02 0.0057 24.8 11.5 94 82-188 220-331 (367)
62 1y8q_A Ubiquitin-like 1 activa 39.0 68 0.0023 26.9 6.5 61 16-80 88-151 (346)
63 1jub_A Dihydroorotate dehydrog 37.5 1.2E+02 0.0041 24.5 7.7 44 144-189 230-276 (311)
64 3k30_A Histamine dehydrogenase 32.4 1.6E+02 0.0055 26.8 8.4 114 67-193 209-333 (690)
65 1x7f_A Outer surface protein; 31.4 31 0.0011 29.9 3.1 99 82-185 15-124 (385)
66 1o94_A Tmadh, trimethylamine d 30.7 72 0.0025 29.5 5.7 111 75-193 210-330 (729)
67 2nly_A BH1492 protein, diverge 30.5 2.1E+02 0.0071 22.9 9.2 110 66-186 39-159 (245)
68 2cw6_A Hydroxymethylglutaryl-C 29.7 50 0.0017 27.0 4.1 118 66-194 121-242 (298)
69 1yad_A Regulatory protein TENI 28.8 1.1E+02 0.0038 23.3 5.8 31 161-191 168-199 (221)
70 3l5a_A NADH/flavin oxidoreduct 28.3 86 0.0029 27.2 5.5 102 79-192 240-354 (419)
71 3ru6_A Orotidine 5'-phosphate 28.3 2.5E+02 0.0087 23.2 10.1 137 32-192 82-238 (303)
72 1jw9_B Molybdopterin biosynthe 27.3 1.4E+02 0.0047 23.5 6.2 62 16-80 83-147 (249)
73 2r14_A Morphinone reductase; H 27.2 1.2E+02 0.0041 25.8 6.1 109 72-192 224-336 (377)
74 2yyu_A Orotidine 5'-phosphate 27.2 64 0.0022 25.6 4.2 33 160-192 179-223 (246)
75 1tv5_A Dhodehase, dihydroorota 26.3 3.2E+02 0.011 23.8 12.7 94 82-188 296-406 (443)
76 1eix_A Orotidine 5'-monophosph 25.8 73 0.0025 25.2 4.3 33 160-192 185-229 (245)
77 1ps9_A 2,4-dienoyl-COA reducta 25.8 90 0.0031 28.3 5.4 110 72-192 199-318 (671)
78 2l5g_A GPS2 protein, G protein 25.1 31 0.0011 19.7 1.3 23 4-26 8-30 (38)
79 1vyr_A Pentaerythritol tetrani 25.0 3E+02 0.01 23.0 8.8 106 71-192 218-331 (364)
80 1q8f_A Pyrimidine nucleoside h 23.2 1.4E+02 0.0049 24.5 5.7 37 83-130 4-40 (313)
81 1xrs_B D-lysine 5,6-aminomutas 23.2 1.9E+02 0.0066 23.4 6.4 41 139-180 197-237 (262)
82 1yoe_A Hypothetical protein YB 23.0 3.1E+02 0.011 22.6 7.8 42 78-131 10-51 (322)
83 2hsa_B 12-oxophytodienoate red 22.1 3.1E+02 0.011 23.4 7.8 119 65-192 221-356 (402)
84 2xvc_A ESCRT-III, SSO0910; cel 21.6 72 0.0025 20.0 2.6 27 95-122 32-58 (59)
85 2gou_A Oxidoreductase, FMN-bin 20.7 3.7E+02 0.013 22.4 9.5 105 71-191 218-329 (365)
86 2c40_A Inosine-uridine preferr 20.3 3.3E+02 0.011 22.1 7.4 37 84-131 3-39 (312)
No 1
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=100.00 E-value=2.2e-47 Score=319.79 Aligned_cols=182 Identities=32% Similarity=0.437 Sum_probs=160.0
Q ss_pred HHHHHHHhc-----cCCcHHHHHHhh-cCCC----CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHH
Q 029062 7 ALVKITYKK-----SLIKLLRFIDKY-NLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS 76 (199)
Q Consensus 7 ~~~~~~~~~-----~~n~~qE~~~k~-~~~~----~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~ 76 (199)
+.+...|++ ++||+||+.+|+ .++. ++.|||||++|+||++.++ +.++++++|||++.++.|++.|.
T Consensus 42 ~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~iG~lq~nk~~~~~---~~~~~i~sVds~~~a~~l~~~a~ 118 (245)
T 3sy1_A 42 SAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVA---EHFDWCITIDRLRIATRLNDQRP 118 (245)
T ss_dssp HHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEECSCCCGGGHHHHH---HHCSEEEEECCHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeecCCCChHHHHHHH---HHCCEEEecCCHHHHHHHHHHHH
Confidence 446677776 899999999999 5542 6999999999999999988 34799999999999999999999
Q ss_pred hcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhC
Q 029062 77 NLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALG 154 (199)
Q Consensus 77 ~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g 154 (199)
+.|+ +++||||||||+|++|+|++|+++.++++.+. .+|+|+++|||||++..++ +.++.|+.+.++++.|++. +
T Consensus 119 ~~~~-~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~~l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~-~ 195 (245)
T 3sy1_A 119 AELP-PLNVLIQINISDENSKSGIQLAELDELAAAVA-ELPRLRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTR-Y 195 (245)
T ss_dssp TTSC-CEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCTTEEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HcCC-CceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHh-C
Confidence 9998 99999999999999999999999999999998 9999999999999998655 3578999999999999886 4
Q ss_pred CCCCCCEEEecCCcCHHHHHHcCCCEEecCccccCCCccccc
Q 029062 155 MAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196 (199)
Q Consensus 155 ~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~~~~ 196 (199)
.+ +..||||||+||+.|+++|+|+||+||+|||+|+|...
T Consensus 196 ~~--~~~LSmGmS~d~~~Ai~~G~t~vRvGt~iFg~r~y~~~ 235 (245)
T 3sy1_A 196 PH--IDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSKK 235 (245)
T ss_dssp TT--CCEEECCCSTTHHHHHHHTCCEEEESHHHHCC------
T ss_pred CC--CCEEeccCcHhHHHHHHcCCCEEECchHHhCCCCCCCC
Confidence 33 68999999999999999999999999999999999764
No 2
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=100.00 E-value=2.1e-45 Score=307.63 Aligned_cols=175 Identities=38% Similarity=0.550 Sum_probs=157.4
Q ss_pred HHHHHHHhc-----cCCcHHHHHHhh-cCC---CCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHh
Q 029062 7 ALVKITYKK-----SLIKLLRFIDKY-NLP---EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSN 77 (199)
Q Consensus 7 ~~~~~~~~~-----~~n~~qE~~~k~-~~~---~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~ 77 (199)
+.+...+++ ++||+||+.+|+ .++ .++.|||||++|+||++.+++ .+++++||||++.+++|+++|.+
T Consensus 43 ~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG~lq~nk~~~~v~---~~~~i~sVds~~~a~~L~~~a~~ 119 (244)
T 3r79_A 43 EAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIGPLQSNKAADAVA---LFDVVESIDREKIARALSEECAR 119 (244)
T ss_dssp HHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECSCCCGGGHHHHHH---HCSEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecCCCCHHHHHHHHH---HCCEEEeeCCHHHHHHHHHHHHH
Confidence 445667776 899999999999 554 269999999999999999983 47999999999999999999999
Q ss_pred cCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCC
Q 029062 78 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAE 157 (199)
Q Consensus 78 ~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~ 157 (199)
.|+ +++||||||||+|++|+|+.|+++.++++.+. .+|+|+++|||||++.++++. .+|+.|+++++.+ +
T Consensus 120 ~g~-~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~-~l~~L~l~GlmTh~a~~dd~~-~~f~~l~~l~~~l----~--- 189 (244)
T 3r79_A 120 QGR-SLRFYVQVNTGLEPQKAGIDPRETVAFVAFCR-DELKLPVEGLMCIPPAEENPG-PHFALLAKLAGQC----G--- 189 (244)
T ss_dssp HTC-CCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHH-HTSCCCCCEEECCCCTTSCSH-HHHHHHHHHHHHH----T---
T ss_pred cCC-CceEEEEEECCCCcCCCCCCHHHHHHHHHHHH-cCCCCEEEEEEecCCCCCCHH-HHHHHHHHHHHhC----C---
Confidence 998 99999999999999999999999999999998 999999999999999876654 7888888877655 2
Q ss_pred CCCEEEecCCcCHHHHHHcCCCEEecCccccCCCcccc
Q 029062 158 DQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 195 (199)
Q Consensus 158 ~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~~~ 195 (199)
+..+|||||+||+.|+++|+|+||||++|||+|+|..
T Consensus 190 -~~~lSmGmS~d~~~Ai~~G~t~vRvGtaIfg~r~~~~ 226 (244)
T 3r79_A 190 -LEKLSMGMSGDFETAVEFGATSVRVGSAIFGSRAENL 226 (244)
T ss_dssp -CCEEECCCTTTHHHHHHTTCSEEEECHHHHCCHHHHH
T ss_pred -CCEEEeecchhHHHHHHcCCCEEEeeHHHhCCCchhh
Confidence 4689999999999999999999999999999999864
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=100.00 E-value=2.4e-43 Score=296.99 Aligned_cols=188 Identities=36% Similarity=0.595 Sum_probs=151.2
Q ss_pred HHHHHHHhc-----cCCcHHHHHHhh-cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCC
Q 029062 7 ALVKITYKK-----SLIKLLRFIDKY-NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 7 ~~~~~~~~~-----~~n~~qE~~~k~-~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+...|++ ++|++|||++|+ .++.++.|||||++|+||++.+++ .+.++++++|||++.++.|++++.+.|+
T Consensus 53 ~~i~~~~~aG~~~fgva~vqEa~~~r~~~~~~l~~h~iG~lq~nk~~~~~~-~~~~~l~~sVds~~~a~~l~~~a~~~~~ 131 (256)
T 1ct5_A 53 SDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDLAK-VPNLYSVETIDSLKKAKKLNESRAKFQP 131 (256)
T ss_dssp HHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEECSCCCGGGHHHHHH-CTTEEEEEEECSHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCEEEEEcHHHHHHHHHhcccCeeEeecCCCCHHHHHHHhc-ccccCEEEEECCHHHHHHHHHHHHHcCC
Confidence 344456666 899999999999 765579999999999999999922 1568999999999999999999988873
Q ss_pred C--CceEEEEEeCCCCCCccCCCh-hhHHHHHHHHH-hcCCCeeEEEEEeeC--CCCCC--ChHHHHHHHHHHHHHHHHH
Q 029062 81 K--PLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVR-LRCPNLEFSGLMTIG--MPDYT--STPENFRTLLNCRAEVCKA 152 (199)
Q Consensus 81 ~--~i~VllqIntg~e~~R~Gv~~-~~~~~l~~~i~-~~~~~L~l~GLmt~~--~~~~~--~~~~~f~~l~~~~~~l~~~ 152 (199)
. +++||||||||+||+|+|++| +++.++++.+. +.+|+|+++|||||+ +.+++ ..+.+|+.|.++++.|++.
T Consensus 132 ~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~~i~~~~~~~L~l~Glmth~~~~~ad~~~~~~~~f~~~~~~~~~l~~~ 211 (256)
T 1ct5_A 132 DCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAK 211 (256)
T ss_dssp TSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTTCCSEEEEEEECCCCCC---------HHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEECCCCCCCcCcCchHHHHHHHHHHHHccCCCeeEEEEEEECCcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 1 689999999999999999999 89999999985 168999999999999 66433 3578999999999999873
Q ss_pred hCCCCCCCEEEecCCcCHHHHHHcCCCEEecCccccCCCcccccCC
Q 029062 153 LGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQ 198 (199)
Q Consensus 153 ~g~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~~~~~~ 198 (199)
++ ++.++|||||+||+.|+++|+||||||++|||+++|....|
T Consensus 212 --~~-~~~~lS~Gms~d~~~ai~~g~t~VR~G~~lfG~~~~~~~~~ 254 (256)
T 1ct5_A 212 --FG-TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKNEAR 254 (256)
T ss_dssp --HC-CCCEEECCCTTTHHHHHHTTCSEEEESHHHHC---------
T ss_pred --CC-CCCEEEecccHhHHHHHHcCCCEEEecHHHhCCCcCCCccc
Confidence 32 36799999999999999999999999999999999975544
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=2.3e-35 Score=250.96 Aligned_cols=177 Identities=36% Similarity=0.541 Sum_probs=148.3
Q ss_pred cCCcHHHHHHhh-cC---------------------CCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHH
Q 029062 16 SLIKLLRFIDKY-NL---------------------PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDK 73 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~---------------------~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~ 73 (199)
++|++|||..++ .+ +..|.||++|++|+++++.++ ..++++++|||+++++.|++
T Consensus 76 ~va~~~Ea~~lr~~l~~~~~~~g~~~~~~G~~~d~~~~~i~~~~iG~~~~~~~~~~~---~~~~l~~~Vds~~~l~~L~~ 152 (282)
T 3cpg_A 76 GENRPQEVTAKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVL---PVVDTIESVDSIDLAEKISR 152 (282)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTEEECCC------CCEEECEEECSCCCGGGHHHHT---TTCSEEEEECCHHHHHHHHH
T ss_pred EEEeHHHHHHHHHhhhhhccccccccccccccccccccceeeeecChhHHHHHHHHH---HhCCEEEEeCCHHHHHHHHH
Confidence 789999999998 52 336899999999999999888 44789999999999999999
Q ss_pred HHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC--hHHHHHHHHHHHHHHHH
Q 029062 74 AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--TPENFRTLLNCRAEVCK 151 (199)
Q Consensus 74 ~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~--~~~~f~~l~~~~~~l~~ 151 (199)
.|.+.++ +++|||+||||++.+|+|++|+++.++++.+. .+|+|++.|||||++..+++ .+.+|+.+.++++.+++
T Consensus 153 ~a~~~~~-~~~V~lkVdtGme~~R~G~~~ee~~~l~~~i~-~~~~l~l~Gl~th~~~~~~~~~~~~~~~~l~~~~~~l~~ 230 (282)
T 3cpg_A 153 RAVARGI-TVGVLLEVNESGEESKSGCDPAHAIRIAQKIG-TLDGIELQGLMTIGAHVHDETVIRRGFSHLRKTRDLILA 230 (282)
T ss_dssp HHHHHTC-CEEEEEEBCCSSCTTSSSBCGGGHHHHHHHHH-TCTTEEEEEEECCCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC-CceEEEEEECCCCCCCCCcCHHHHHHHHHHHH-hCCCceEEeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9998887 99999999999666999999999999999999 99999999999999986553 35688999999999987
Q ss_pred HhCCC-CCCCEEEecCCcCHHHHHHcCCCEEecCccccCCCcccccC
Q 029062 152 ALGMA-EDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQ 197 (199)
Q Consensus 152 ~~g~~-~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~~~~~ 197 (199)
.+|++ .++..+|||||++++.+++.|+|+||||++|||++|+..++
T Consensus 231 ~~g~~~~~~~~lS~g~S~~~~~~~~~~~~~VR~G~~lyG~~p~~~~~ 277 (282)
T 3cpg_A 231 SGEPGTDRCRELSMGMTGDMELAIAEGSTIVRVGTAIFGERAFIEGH 277 (282)
T ss_dssp HCCTTCTTCCEEECCCTTTHHHHHHTTCSEEEESTTTC---------
T ss_pred hhCCCCCCCCEEEecCcHhHHHHHHcCCCEEEeccHHhCCCCCCCcc
Confidence 54643 22578999999999999999999999999999999986554
No 5
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.97 E-value=1.3e-29 Score=226.82 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=141.1
Q ss_pred cCCcHHHHHHhh--cCCC-CceeeeecccchHHHHhHhccC--CCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe
Q 029062 16 SLIKLLRFIDKY--NLPE-DIKWHFVGHLQSNKAKTLLGGV--PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN 90 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~-~i~~h~IG~lq~~ki~~l~~~~--~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn 90 (199)
..++++|+..++ ++++ .+.|+++|+ ++++.+++.. +.++++++|||+++++.|++.+.+.++ +++|+|+||
T Consensus 99 ~vas~~Ea~~l~~~Gi~~ill~~~~~~~---~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~l~Vd 174 (426)
T 3gwq_A 99 TLATAHQVRAAYHGGVSRVLMANQLVGR---RNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNK-QLQVLLELG 174 (426)
T ss_dssp EESSHHHHHHHHHTTCCEEEECSCCCSH---HHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-CEEEEEEEC
T ss_pred EEeCHHHHHHHHHCCCCeEEEECCcCCH---HHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCC-eeEEEEEeC
Confidence 578999999988 4432 346666776 4555443221 236899999999999999999999998 999999999
Q ss_pred CCCCCCccCCCh-hhHHHHHHHHHhcCC-CeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhCC-CCCCCEEEec
Q 029062 91 TSGEESKSGIDP-SSCLGIVEHVRLRCP-NLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGM-AEDQCELSMG 165 (199)
Q Consensus 91 tg~e~~R~Gv~~-~~~~~l~~~i~~~~~-~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g~-~~~~~~lS~G 165 (199)
+| ++|+|+.+ +++.++++.+. ++| +|++.|||||++..++ ..+++|+++.++++.|++. |+ ...+..+|||
T Consensus 175 tG--~~R~Gv~~~~e~~~l~~~i~-~~~~~l~l~Gl~th~g~~~~~~~~~~~~~~l~~l~~~L~~~-g~~~~~~~~lS~G 250 (426)
T 3gwq_A 175 VP--GGRTGVRDAAQRNAVLEAIT-RYPDTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQ-ERFARAPAVLSGA 250 (426)
T ss_dssp CT--TSSSSBCSHHHHHHHHHHHH-TSTTTEEEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHHHH-TCCSSSSEEEEEC
T ss_pred CC--CCcCCCCCHHHHHHHHHHHH-cCCCCEEEEeEEEEccccCCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEEEec
Confidence 99 89999985 99999999999 999 9999999999998554 3578899999999999886 64 1125789999
Q ss_pred CCcCHHHHHHc---------CCCEEecCccccCCCc
Q 029062 166 MSGDFEQAIEM---------GSTSVRIGSTIFGPRE 192 (199)
Q Consensus 166 ms~d~~~a~~~---------g~t~VR~Gs~ifgd~~ 192 (199)
||+||+.++++ |+|+||+|+|||+|+.
T Consensus 251 ~S~~~~~a~~~~~~~~~~~~g~t~vR~Gs~if~d~~ 286 (426)
T 3gwq_A 251 GSAWYDVVAEEFVKASETGKVEVVLRPGCYLTHDVG 286 (426)
T ss_dssp CSTTHHHHHHHTHHHHHSSSEEEEECCCCSSSSCSH
T ss_pred CChhHHHHHhhhhccccCCCcCEEEecceEEEcChH
Confidence 99999999875 9999999999999995
No 6
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.94 E-value=3.8e-26 Score=201.46 Aligned_cols=166 Identities=11% Similarity=0.064 Sum_probs=143.5
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+.++++|+..++ +++. +..++|+.+.++++.+++ .+++++|||++.++.|++.|.+.++ +++|||+||||
T Consensus 62 ~vas~~Ea~~~~~~G~~~--~il~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG- 133 (386)
T 1vfs_A 62 GTATPEEALELRAAGIQG--RIMCWLWTPGGPWREAIE----TDIDVSVSGMWALDEVRAAARAAGR-TARIQLKADTG- 133 (386)
T ss_dssp EESSHHHHHHHHHTTCCS--EEEECCCCTTCCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTS-CEEEEEEBCSS-
T ss_pred EEeeHHHHHHHHhcCCCC--CEEEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEcCC-
Confidence 678999999998 4443 456789999999999985 5788999999999999999998887 99999999999
Q ss_pred CCCccCCChhhHHHH---HHHHHhcCCCeeEEEEEeeCCCCCC--C--hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecC
Q 029062 94 EESKSGIDPSSCLGI---VEHVRLRCPNLEFSGLMTIGMPDYT--S--TPENFRTLLNCRAEVCKALGMAEDQCELSMGM 166 (199)
Q Consensus 94 e~~R~Gv~~~~~~~l---~~~i~~~~~~L~l~GLmt~~~~~~~--~--~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gm 166 (199)
++|+|++++++.++ ++.+. ++|+|++.|||||++..++ . ...+++.|.++.+.+++. |++ +..+|+|+
T Consensus 134 -~~R~G~~~~e~~~~~~~~~~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~~-g~~--~~~~~~g~ 208 (386)
T 1vfs_A 134 -LGRNGCQPADWAELVGAAVAAQ-AEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKE-GVD--PEVRHIAN 208 (386)
T ss_dssp -CCSSSBCHHHHHHHHHHHHHHH-HTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHT-TCC--CSEEEEEC
T ss_pred -CCCCCCCHhHHHHHHHHHHHHH-hCCCceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHhc-CCC--CCeEEecC
Confidence 79999999887444 99998 8999999999999987443 2 467899999999999875 776 46899999
Q ss_pred CcCHHHHHHcCCCEEecCccccCCCccc
Q 029062 167 SGDFEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 167 s~d~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
|+++..+.+.++|+||+|+++||.+++.
T Consensus 209 s~g~~~~~~~~~~~vR~G~~lyg~~p~~ 236 (386)
T 1vfs_A 209 SPATLTLPETHFDLVRTGLAVYGVSPSP 236 (386)
T ss_dssp HHHHHHCGGGCSSEEEECGGGGTCCSCG
T ss_pred CHHHHcCccccCCEEEeChhhhCCCccc
Confidence 9999877788999999999999998763
No 7
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.94 E-value=3.8e-26 Score=201.18 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=143.1
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+.++++|+..++ +++. .+.++|+.+.++++.+++ .+++++|||++.++.|++.+.+.++ +++|||+||||
T Consensus 66 ~vas~~Ea~~~~~~G~~~--~Il~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG- 137 (384)
T 1xfc_A 66 GVATVDEALALRADGITA--PVLAWLHPPGIDFGPALL----ADVQVAVSSLRQLDELLHAVRRTGR-TATVTVKVDTG- 137 (384)
T ss_dssp EESCHHHHHHHHHTTCCS--CEEECCCCTTCCCHHHHH----TTCEEEECSHHHHHHHHHHHHHHCC-CEEEEEEBCSS-
T ss_pred EEeEHHHHHHHHhcCCCC--CEEEEcCCCHHHHHHHHH----cCcEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEECC-
Confidence 678999999998 4443 467899999999999885 5688999999999999999998887 99999999999
Q ss_pred CCCccCCCh---hhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--C--hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecC
Q 029062 94 EESKSGIDP---SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--S--TPENFRTLLNCRAEVCKALGMAEDQCELSMGM 166 (199)
Q Consensus 94 e~~R~Gv~~---~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~--~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gm 166 (199)
++|+|+++ +++.++++.+. ++|+|++.|||||++...+ . .+.+++.|.++.+.+++. |++ +..+|+|+
T Consensus 138 -~~R~G~~~~~~~~~~~~~~~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~l~~g~ 212 (384)
T 1xfc_A 138 -LNRNGVGPAQFPAMLTALRQAM-AEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQ-GVR--FEVAHLSN 212 (384)
T ss_dssp -CCSSSBCTTTHHHHHHHHHHHH-HTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHT-TCC--CSEEECBC
T ss_pred -CCccCCCcCcHHHHHHHHHHHH-hCCCCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhc-CCC--CCeEEEec
Confidence 89999999 89999999998 8999999999999987432 2 467899999999999875 876 47899999
Q ss_pred CcCHHHHHHcCCCEEecCccccCCCccc
Q 029062 167 SGDFEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 167 s~d~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
|+++..+.+.++|+||+|+++||++++.
T Consensus 213 s~~~~~~~~~~~~~vR~G~~lyg~~~~~ 240 (384)
T 1xfc_A 213 SSATMARPDLTFDLVRPGIAVYGLSPVP 240 (384)
T ss_dssp HHHHHHCGGGCCSEECCSGGGGTCCSSG
T ss_pred CHHHhcCccccCCEEccCHHhHCCCccc
Confidence 9999887788999999999999998763
No 8
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.94 E-value=4.6e-26 Score=200.83 Aligned_cols=163 Identities=12% Similarity=0.157 Sum_probs=141.7
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
+.++++|+..++..+.+.+++++|+.+.++++.+++ .+++++|||++++++|++. ++ +++|||+|||| |
T Consensus 62 ~va~~~Ea~~lr~~G~~~~ilvlg~~~~~~~~~~~~----~~i~~~v~s~~~l~~l~~~----~~-~~~v~lkvdtG--m 130 (374)
T 4ecl_A 62 AVATIDEGIRLRKYGISSEILILGYTSPSRAKELCK----YELTQTLIDYRYSLLLNKQ----GY-DIKAHIKIDTG--M 130 (374)
T ss_dssp EESSHHHHHHHHHTTCCSEEEECSCCCGGGHHHHHH----TTCEEEECCHHHHHHHHTT----CC-CEEEEEEEESS--S
T ss_pred EEEEHHHHHHHHhcCCCCCEEEEeCCCHHHHHHHHH----CCCEEEECCHHHHHHHHhc----CC-CccEEEEEcCC--C
Confidence 789999999998333234677889999999999985 5789999999999999986 76 89999999999 8
Q ss_pred CccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---C----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc
Q 029062 96 SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---S----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 168 (199)
Q Consensus 96 ~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~ 168 (199)
+|+|+. +++.++++.+. ++|+|++.|||||++..++ + ..++++.|.++.+.|++. |++ +..+|+|+|+
T Consensus 131 ~R~G~~-~e~~~~~~~i~-~~~~l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~~-g~~--~~~~~~~nSa 205 (374)
T 4ecl_A 131 HRLGFS-TEDKDKILAAF-SLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKSS-GLN--IPKVHIQSSY 205 (374)
T ss_dssp CSSSEE-SSCHHHHHHHT-TCTTEEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCCHH
T ss_pred CcCccC-HHHHHHHHHHH-hCCCceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHHc-CCC--CCeEEecCCc
Confidence 999999 88999999998 9999999999999998654 2 357889999999999875 876 4789999999
Q ss_pred CHHHHHHcCCCEEecCccccCCCccc
Q 029062 169 DFEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 169 d~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
++....+.++|+||||+++||..|+.
T Consensus 206 ~~~~~~~~~~d~vR~Gi~lyG~~p~~ 231 (374)
T 4ecl_A 206 GLLNYPELECDYIRVGVALYGVLSST 231 (374)
T ss_dssp HHHHCTTCCCSEEEESGGGGTCCSSS
T ss_pred hhhcCcccCCCEEcccceeeCCCCcc
Confidence 98877788999999999999998764
No 9
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.92 E-value=5.7e-25 Score=194.32 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=141.0
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+.++++|+..++ +++.+ ..++|+.+.++++.+++ .+++++|||+++++.|++ +.+.++ +++|||+||||
T Consensus 67 ~vas~~Ea~~lr~~G~~~~--il~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a~~~~~-~~~V~lkvdtG- 137 (391)
T 2vd8_A 67 AVAFLDEALVLRRAGITAP--ILVLGPSPPRDINVAAE----NDVALTVFQXEWVDEAIX-LWDGSS-TMXYHINFDSG- 137 (391)
T ss_dssp EESSHHHHHHHHHTTCCSC--EEECSCCCGGGHHHHHH----TTEEEECCCHHHHHHHHH-HCCSSC-CEEEEEEBCSS-
T ss_pred EeecHHHHHHHHhcCCCCc--eEEecCCChHHHHHHHH----CCeEEEEcCHHHHHHHHH-HHhcCC-ceEEEEEEeCC-
Confidence 678999999998 44433 44679999999999985 578999999999999999 878887 99999999999
Q ss_pred CCCccCCCh-hhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--C--hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc
Q 029062 94 EESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--S--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 168 (199)
Q Consensus 94 e~~R~Gv~~-~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~--~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~ 168 (199)
|+|+|+++ +++.++++.+. ++|+|++.|||||++..++ . ...+++.|.++.+.+++. |+. +..+|+|+|.
T Consensus 138 -m~R~G~~~~~e~~~~~~~i~-~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~~-g~~--~~~~~~gnS~ 212 (391)
T 2vd8_A 138 -MGRIGIRERXELXGFLXSLE-GAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEF-GVD--PXFVHTANSA 212 (391)
T ss_dssp -CCSSSBCCHHHHHHHHHHHT-TCTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHT-TCC--CCSEECCCHH
T ss_pred -CCCCCCCchhhHHHHHHHHh-hcCCceEEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHhc-cCC--cceEEecchh
Confidence 89999996 89999999998 8999999999999987433 2 467899999999999875 776 3578999998
Q ss_pred CHHHHHHcCCCEEecCccccCCCcc
Q 029062 169 DFEQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 169 d~~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
.+....+.++|+||+|+++||..++
T Consensus 213 g~~~~~~~~~~~vR~G~~lyg~~p~ 237 (391)
T 2vd8_A 213 ATLRFQGITFNAVRIGIAMYGLSPS 237 (391)
T ss_dssp HHTTCTTCCTTEEEESTTTTTCCSC
T ss_pred HhhcCcccCCCEEehhHHhcCCCCc
Confidence 8776667899999999999998875
No 10
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.92 E-value=3.3e-25 Score=193.37 Aligned_cols=159 Identities=15% Similarity=0.185 Sum_probs=131.1
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+.++++|+..++ +++.+|- +++|+.+.++++.+++ .+++++|||++.++.|++ + +.++ +++|||+||||
T Consensus 56 ~va~~~Ea~~~~~~G~~~~Il-~~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG- 126 (357)
T 1rcq_A 56 AVACIEEGLELREAGIRQPIL-LLEGFFEASELELIVA----HDFWCVVHCAWQLEAIER-A-SLAR-PLNVWLKMDSG- 126 (357)
T ss_dssp EESSHHHHHHHHHTTCCSCEE-ETTCCSSGGGHHHHHH----TTEEEEECSHHHHHHHHH-C-CCSS-CEEEEEEBCSS-
T ss_pred EEccHHHHHHHHhCCcCCCEE-EEeCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHh-h-ccCC-CeEEEEEEcCC-
Confidence 789999999998 4543443 5889999999999985 578999999999999999 7 7787 89999999999
Q ss_pred CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC
Q 029062 94 EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 169 (199)
Q Consensus 94 e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d 169 (199)
++|+|++++++.++++.+. ++|+|++.|||||++..++. ...+++.|.++.+ .+.. . +|+|+|++
T Consensus 127 -~~R~G~~~~~~~~~~~~i~-~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~f~~~~~------~l~~--~-~s~~ns~~ 195 (357)
T 1rcq_A 127 -MHRVGFFPEDFRAAHERLR-ASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQ------GLEG--E-ISLRNSPA 195 (357)
T ss_dssp -SCSSSBCHHHHHHHHHHHH-HTTCEEEEEEECCCSSTTCTTCTHHHHHHHHHHHHHT------TCCS--C-EECCCHHH
T ss_pred -CCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEEcccCCCCCCcHHHHHHHHHHHHHHh------ccCC--C-eEEEeCHH
Confidence 8999999999999999998 99999999999999874432 1234444444322 2221 3 89999999
Q ss_pred HHHHHHcCCCEEecCccccCCCccc
Q 029062 170 FEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 170 ~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
+..+.+.++|+||+|+++||++++.
T Consensus 196 ~~~~~~~~~~~vR~G~~lyg~~~~~ 220 (357)
T 1rcq_A 196 VLGWPKVPSDWVRPGILLYGATPFE 220 (357)
T ss_dssp HHHCTTSCCSEECCCGGGGTCCSSS
T ss_pred hhcCcccCCCEEccCHHhhCCCccc
Confidence 9877788999999999999998864
No 11
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.92 E-value=4e-25 Score=194.36 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=130.9
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccC-CCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 92 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~-~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg 92 (199)
+.++++||+.++ ++++ + ....|.. .++++.++++. +.++++++|||.++++.|++.+.+.++ +++|||+||||
T Consensus 67 ~va~~~Ea~~l~~~Gi~~-~-il~~~~~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG 142 (376)
T 3llx_A 67 TVSTLAEAEAYAKAGYTD-L-LYAVGIA-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQ-DFSVFIEIDSD 142 (376)
T ss_dssp EESSHHHHHHHHHTTCCE-E-EEEEECC-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS
T ss_pred EEecHHHHHHHHhCCCCc-E-EEeCCCC-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC
Confidence 678999999988 3432 1 1122444 67888777211 136899999999999999999999997 99999999999
Q ss_pred CCCCccCCChhh--HHHHHHHHHhcCCCeeEEEEEeeCCCCCCC---------hHHHHHHHHHHHHHHHHHhCCCCCCCE
Q 029062 93 GEESKSGIDPSS--CLGIVEHVRLRCPNLEFSGLMTIGMPDYTS---------TPENFRTLLNCRAEVCKALGMAEDQCE 161 (199)
Q Consensus 93 ~e~~R~Gv~~~~--~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~---------~~~~f~~l~~~~~~l~~~~g~~~~~~~ 161 (199)
++|+|+.+++ +.++++ .+ +|++.|||||+++.++. .+++++.|.++.+.+++. |++ +..
T Consensus 143 --~~R~G~~~~~~~l~~~~~----~l-~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~~-g~~--~~~ 212 (376)
T 3llx_A 143 --DHRGGIKPSDSKLLTIAK----TL-GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETA-GIH--CAI 212 (376)
T ss_dssp --SSSSCBCTTCTHHHHHHH----HH-GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHT-TCC--CCE
T ss_pred --CCCCCCCCchHHHHHHHH----Hh-CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CCE
Confidence 7999999966 444443 33 89999999999984321 357888999999999875 775 478
Q ss_pred EEecCCcCHHHHHHc-CCCEEecCccccCCCccc
Q 029062 162 LSMGMSGDFEQAIEM-GSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 162 lS~Gms~d~~~a~~~-g~t~VR~Gs~ifgd~~~~ 194 (199)
+|+|+|+++..+.+. |+||||||+++||+++|.
T Consensus 213 vs~g~S~~~~~~~~~~~~~~vR~G~~lyg~~~~~ 246 (376)
T 3llx_A 213 TSVGSTPTAHFGEDFSDISEVRAGVYTTFDLVMK 246 (376)
T ss_dssp EEECCHHHHHHCSCCTTCSEECCCGGGTCCHHHH
T ss_pred EEEcCChhhhhhhhcCCccEeccceEEeccHhHh
Confidence 999999999877666 899999999999999874
No 12
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.92 E-value=5.7e-25 Score=193.78 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=131.3
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+.++++|+..++ +++.+|- +++|+.+.++++.+++ .+++++|||+++++.|++ + +.++ +++|||+||||
T Consensus 76 ~va~~~Ea~~lr~~G~~~~Il-~~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG- 146 (379)
T 2rjg_A 76 GVARLEEALRLRAGGITKPVL-LLEGFFDARDLPTISA----QHFHTAVHNEEQLAALEE-A-SLDE-PVTVWMKLDTG- 146 (379)
T ss_dssp EESSHHHHHHHHHTTCCSCEE-ETTCCSCGGGHHHHHH----TTEEEEECSHHHHHHHHH-C-CCSS-CBCEEEEBCSS-
T ss_pred EEeEHHHHHHHHhCCcCCCEE-EEECCCCHHHHHHHHH----cCcEEEECCHHHHHHHHh-h-CCCC-CeEEEEEECCC-
Confidence 788999999999 4543443 4889999999999985 578999999999999999 6 7776 89999999999
Q ss_pred CCCccCCChhhHHHHHHHHHhcCCC-eeEEEEEeeCCCCCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc
Q 029062 94 EESKSGIDPSSCLGIVEHVRLRCPN-LEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 168 (199)
Q Consensus 94 e~~R~Gv~~~~~~~l~~~i~~~~~~-L~l~GLmt~~~~~~~~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~ 168 (199)
++|+|++++++.++++.+. ++|+ |++.|||||++..+++ ...+++.|.++.+ .+.. . +|+|+|+
T Consensus 147 -m~R~G~~~~e~~~~~~~i~-~~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~------~l~~--~-~s~gnS~ 215 (379)
T 2rjg_A 147 -MHRLGVRPEQAEAFYHRLT-QCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCE------GKPG--Q-RSIAASG 215 (379)
T ss_dssp -CCSSSBCHHHHHHHHHHHT-TCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHHT------TCCS--C-EECCCHH
T ss_pred -CCccCCCHHHHHHHHHHHH-hCCCcEEEEEEEEECCccCCCCcHHHHHHHHHHHHHHh------ccCC--C-eEEEECc
Confidence 8999999999999999998 8999 9999999999975432 2344444444322 2322 3 8999999
Q ss_pred CHHHHHHcCCCEEecCccccCCCccc
Q 029062 169 DFEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 169 d~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
++..+.+.++|+||+|+++||++++.
T Consensus 216 ~~~~~~~~~~~~vR~G~~lyG~~p~~ 241 (379)
T 2rjg_A 216 GILLWPQSHFDWVRPGIILYGVSPLE 241 (379)
T ss_dssp HHHHCGGGCSSEECCCGGGGTCCSSS
T ss_pred chhcCcccCCCEECccHHHHCCCccc
Confidence 99888888999999999999998864
No 13
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.92 E-value=2.2e-24 Score=190.50 Aligned_cols=165 Identities=13% Similarity=0.070 Sum_probs=133.5
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+.++++|+..++ +++. +..++|+.+.++++.+++ .+++++|||+++++.|++.| +.++ +++|||+||||
T Consensus 63 ~vas~~Ea~~lr~aG~~~--~Il~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a-~~~~-~~~V~lkvdtG- 133 (388)
T 1bd0_A 63 AVAFLDEALALREKGIEA--PILVLGASRPADAALAAQ----QRIALTVFRSDWLEEASALY-SGPF-PIHFHLKMDTG- 133 (388)
T ss_dssp EESSHHHHHHHHHTTCCS--CEEECSCCCGGGHHHHHH----TTEEEEECCHHHHHHHHHHC-CCSS-CEEEEEEBCSS-
T ss_pred EEeeHHHHHHHHhCCcCC--CEEEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHh-ccCC-CeEEEEEEcCC-
Confidence 678999999998 4543 355789999999999885 57899999999999999988 7887 99999999999
Q ss_pred CCCccCCCh-hhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHH
Q 029062 94 EESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ 172 (199)
Q Consensus 94 e~~R~Gv~~-~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~ 172 (199)
++|+|+++ +++.++++.+. ++|+|++.|||||++..+++....+......++.+++.+|++ +..+|+|+|.++..
T Consensus 134 -m~R~G~~~~~e~~~~~~~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~l~~~~g~~--~~~~~~g~S~~~~~ 209 (388)
T 1bd0_A 134 -MGRLGVKDEEETKRIVALIE-RHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSR--PPLVHCANSAASLR 209 (388)
T ss_dssp -SCSSSBCSHHHHHHHHHHHH-HSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSC--CSEEECCCHHHHHH
T ss_pred -CCcCCCCCHHHHHHHHHHHH-hCCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHHHhhcCCC--CCeEEecCCHHHhc
Confidence 89999997 89999999998 899999999999999754322111222222233355433665 46899999999887
Q ss_pred HHHcCCCEEecCccccCCCcc
Q 029062 173 AIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 173 a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
..+.++|+||+|+++||..|+
T Consensus 210 ~~~~~~~~vR~G~~lyG~~p~ 230 (388)
T 1bd0_A 210 FPDRTFNMVRFGIAMYGLAPS 230 (388)
T ss_dssp CTTSCTTEEEECGGGGTCCSC
T ss_pred CcccCCCEEehhHHHHCCCcc
Confidence 778899999999999998875
No 14
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.92 E-value=1.1e-24 Score=190.23 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=137.5
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
..++++|+..++..+-+-..+++|+.+.++++.+++ .+++++|||++++++|++.+.+ +++|||+|||| +
T Consensus 58 ~vas~~E~~~~~~~G~~~~il~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~----~~~v~l~vdtG--~ 127 (361)
T 2dy3_A 58 GVATLAEAMQLRDIGISQEVLCWIWTPEQDFRAAID----RNIDLAVISPAHAKALIETDAE----HIRVSIKIDSG--L 127 (361)
T ss_dssp EESSHHHHHHHHHTTCCSEEEECCCCTTSCHHHHHT----TTCEEEECSHHHHHHHHTSCCS----CEEEEEEBCCS--S
T ss_pred EEeEHHHHHHHHhcCCCCCEEEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhCcc----CCEEEEEEeCC--C
Confidence 678999999998322223567889999999998884 5678999999999999986543 58999999999 7
Q ss_pred CccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--C--hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH
Q 029062 96 SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--S--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE 171 (199)
Q Consensus 96 ~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~--~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~ 171 (199)
+|+|++++++.++++.+. ++|+|++.|||||.+...+ . ...+++.|.++.+.+++. |++ +..+|+|+|+++.
T Consensus 128 ~R~G~~~~~~~~~~~~~~-~~~~l~~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~~~~g~s~~~~ 203 (361)
T 2dy3_A 128 HRSGVDEQEWEGVFSALA-AAPHIEVTGMFTHLACADEPENPETDRQIIAFRRALALARKH-GLE--CPVNHVCNSPAFL 203 (361)
T ss_dssp CSSSBCHHHHHHHHHHHH-TCTTEEEEEEECCCC--------CHHHHHHHHHHHHHHHHHT-TCC--CCSCBCCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-hCCCCCEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhc-CCC--CCeEEEeCCHHHh
Confidence 999999999999999998 8999999999999987432 2 568899999999999875 875 3678999999988
Q ss_pred HHHHcCCCEEecCccccCCCccc
Q 029062 172 QAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 172 ~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
.+.+.++|+||+|+++||+.++.
T Consensus 204 ~~~~~~~~~vR~G~~l~g~~~~~ 226 (361)
T 2dy3_A 204 TRSDLHMEMVRPGLAFYGLEPVA 226 (361)
T ss_dssp HCGGGCTTEECCCGGGGTCCSST
T ss_pred cCcccCCCEEecchHhhCCCccc
Confidence 77778999999999999988753
No 15
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.91 E-value=6.3e-25 Score=193.44 Aligned_cols=165 Identities=12% Similarity=0.088 Sum_probs=134.2
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHH-HHHHHhcCCCCceEEEEEeCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKPLKVLVQVNTSGE 94 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l-~~~a~~~g~~~i~VllqIntg~e 94 (199)
+.++++|+..++..+.+.+++++|+.+.++++.+++ .+++++|||+++++.| ++.|.+.++ +++|||+||||
T Consensus 64 ~va~~~Ea~~lr~~G~~~~Ilvlg~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~~a~~~~~-~~~V~lkvdtG-- 136 (371)
T 3e5p_A 64 CVALLDEAIELREAGVQDPILILSVVDLAYVPLLIQ----YDLSVTVATQEWLEAALQQLTPESNT-PLRVHLKVDTG-- 136 (371)
T ss_dssp EESSHHHHHHHHTTTCCSCEEEEEECCGGGHHHHHH----HTCEEEECCHHHHHHHHHHHCSCCSC-CBCEEEEBCSS--
T ss_pred EEEeHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHHcCC-ceEEEEEECCC--
Confidence 689999999998333234678889999999998885 5889999999999999 999988887 99999999999
Q ss_pred CCccCCCh-hhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC
Q 029062 95 ESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 169 (199)
Q Consensus 95 ~~R~Gv~~-~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d 169 (199)
|+|+|+.| +++.++++.+. ++|+|++.|||||++.++++ ..+|+++|.++.+.+++. ...+|++.|..
T Consensus 137 m~R~G~~~~ee~~~~~~~i~-~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~------~~~~h~~NSa~ 209 (371)
T 3e5p_A 137 MGRIGFLTPEETKQAVRFVQ-SHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEEL------PRYVHVSNSAT 209 (371)
T ss_dssp SCSSSBCSSHHHHHHHHHHH-HSTTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSCC------CSEEECBCHHH
T ss_pred CCcCCCCCHHHHHHHHHHHH-hCCCccEEEEEEEcCCCCCCCcHHHHHHHHHHHHHHHHhhhc------CCeEEEecChh
Confidence 89999999 99999999998 99999999999999985542 356777777665554321 24567665554
Q ss_pred HHHHHHcCCCEEecCccccCCCccc
Q 029062 170 FEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 170 ~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
.....+.++|+||||+++||..|..
T Consensus 210 ~~~~~~~~~d~vR~Gi~lYG~~p~~ 234 (371)
T 3e5p_A 210 ALWHPDVPGNMIRYGVAMYGLNPSG 234 (371)
T ss_dssp HHHCTTSSCSEEEECGGGGTCCTTT
T ss_pred HhcCcccCCCeEeeCceeECCCccc
Confidence 4333468999999999999987653
No 16
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.91 E-value=2.3e-24 Score=189.54 Aligned_cols=163 Identities=12% Similarity=0.073 Sum_probs=131.9
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
+.++++||..++..+.+.+++++|+.+.++++.+++ .+++++|||+++++.|++.+.+. + +++|||+|||| |
T Consensus 63 ~va~~~Ea~~lr~~G~~~~ilvlg~~~~~~~~~~~~----~~l~~~V~s~~~l~~l~~~a~~~-~-~~~V~lkvdtG--m 134 (367)
T 3mub_A 63 CVSNIDEAIELRQAGLSKPILILGVSEIEAVALAKE----YDFTLTVAGLEWIQALLDKEVDL-T-GLTVHLKIDSG--M 134 (367)
T ss_dssp EESSHHHHHHHHHTTCCSCEEEEEECCGGGHHHHHH----TTEEEEECCHHHHHHHHHTTCCC-T-TCEEEEEECSS--C
T ss_pred EEeEHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhc-C-CeeEEEEECCC--C
Confidence 789999999998333234678889999999998885 58999999999999999988777 6 89999999999 8
Q ss_pred CccCCCh-hhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCH
Q 029062 96 SKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF 170 (199)
Q Consensus 96 ~R~Gv~~-~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~ 170 (199)
+|+|+.| +++.++++.+. + |+|++.|||||++.++++ ...|+++|.++.+.+++. ...+|++.|...
T Consensus 135 ~R~G~~~~ee~~~~~~~i~-~-~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~------~~~~h~~NSa~~ 206 (367)
T 3mub_A 135 GRIGFREASEVEQAQDLLQ-Q-HGVCVEGIFTHFATADEESDDYFNAQLERFKTILASMKEV------PELVHASNSATT 206 (367)
T ss_dssp CSSSBCSHHHHHHHHHHHH-H-TTCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHHHTCSSC------CSEEEEECHHHH
T ss_pred CcCCCCcHHHHHHHHHHHc-c-CCcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHHhhhc------CCeEEEecChHH
Confidence 9999999 99999999999 8 999999999999985442 457888888777665431 234555544443
Q ss_pred HHHHHcCCCEEecCccccCCCccc
Q 029062 171 EQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 171 ~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
....+.++|+||||+++||..|..
T Consensus 207 l~~~~~~~d~vR~Gi~lYG~~p~~ 230 (367)
T 3mub_A 207 LWHVETIFNAVRMGDAMYGLNPSG 230 (367)
T ss_dssp HHCGGGCCSEEEECTTTTTCCTTT
T ss_pred hcCcccCCCeEEhhhHhhCCCCcc
Confidence 333368999999999999987653
No 17
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.90 E-value=8.6e-24 Score=186.86 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=128.5
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
+.++++||..++..+.+.+++++|+.+.++++.+++ .+++++|||+++++.|++.|.+.++.+++|||+|||| |
T Consensus 63 ~Va~~~Ea~~lr~aGi~~~ilvlg~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~a~~~~~~~~~V~lkvDtG--m 136 (382)
T 4a3q_A 63 AVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQ----HRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTG--M 136 (382)
T ss_dssp EESSHHHHHHHHTTTCCSEEEECSCCCGGGHHHHHH----TTCBEEECCHHHHHHHHHTCCTTCCSCEEEEEEBCSS--S
T ss_pred EEeEHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCCCceeEEEEECCC--C
Confidence 789999999998433334678889999999998885 5789999999999999998887762169999999999 8
Q ss_pred CccCCChhh-HHHHHHHHHhcCCCeeEEEEEeeCCCCCCC---hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH
Q 029062 96 SKSGIDPSS-CLGIVEHVRLRCPNLEFSGLMTIGMPDYTS---TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE 171 (199)
Q Consensus 96 ~R~Gv~~~~-~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~---~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~ 171 (199)
+|+|+.|++ +.++++.+. ++|+|++.|||||++.++++ ...|++.|.++.+.+ .. ...+|++.|....
T Consensus 137 ~R~G~~~~e~~~~~~~~i~-~~~~l~l~Gl~tH~a~ad~~~~~~~~Q~~~F~~~~~~l-----~~--~~~~h~aNSa~~l 208 (382)
T 4a3q_A 137 GRLGIKDTNTYQEVIEIIQ-QYEQLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNEA-----IK--PEYIHCQNSAGSL 208 (382)
T ss_dssp SSSSBCCHHHHHHHHHHHH-HCTTEEEEEEECCC-------CHHHHHHHHHHHHHTTS-----CC--CSEEECCCHHHHH
T ss_pred CcCCCChHHHHHHHHHHHH-hCCCceEEEEEEECcCCCCCCchHHHHHHHHHHHHHhh-----CC--CCcEEEEcChhhh
Confidence 999999976 999999998 89999999999999985442 456777776655443 12 3556776665544
Q ss_pred HHHHcCCCEEecCccccCCCcc
Q 029062 172 QAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 172 ~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
...+.++|+||||+++||..|.
T Consensus 209 ~~~~~~~d~vR~Gi~lYG~~p~ 230 (382)
T 4a3q_A 209 LMDCQFCNAIRPGISLYGYYPS 230 (382)
T ss_dssp HCCCTTCSEECCCGGGGTCCSS
T ss_pred cCcccCCCeEeecceeECCCcc
Confidence 3346789999999999998764
No 18
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.90 E-value=2.4e-24 Score=190.05 Aligned_cols=163 Identities=10% Similarity=0.116 Sum_probs=131.1
Q ss_pred cCCcHHHHHHhhcCC-CCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC
Q 029062 16 SLIKLLRFIDKYNLP-EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE 94 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~-~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e 94 (199)
+.++++|+..++... .+.+++++|+++.++++.+++ .+++++|||++++++|++.|.+.++ +++|||+||||
T Consensus 75 ~Va~~~Ea~~lr~ag~~~~~ilvl~~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~a~~~~~-~~~V~lkVdtG-- 147 (376)
T 3kw3_A 75 FVAQIEEALQLKAVLPENVMIALLNGFPHKAEEFVAQ----SGIIPLLNSWSTIEDWQTLCQKKNK-KFPAIIQVDTN-- 147 (376)
T ss_dssp EESSHHHHHHHHHHSCSSCEEEETTCCCTTCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--
T ss_pred EEeEHHHHHHHHhcCCCCCCEEEEeCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHcCC-CeEEEEEECCC--
Confidence 789999999998322 235788999999999998885 5789999999999999999999997 99999999999
Q ss_pred CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCH
Q 029062 95 ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF 170 (199)
Q Consensus 95 ~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~ 170 (199)
|+|+|+.|+++.++++.+. ++|+|++.|||||++.++++ ..+|+++|.++.+.+. ++ . .|++.|...
T Consensus 148 m~R~G~~~~e~~~l~~~i~-~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~---~~----~-~h~aNSa~~ 218 (376)
T 3kw3_A 148 MSRLGLDKKELQKLIKNPT-IFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLP---TC----K-VSFANSGGI 218 (376)
T ss_dssp CCSSSBCHHHHHHHHHCCT-HHHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSC---CC----C-EECCCHHHH
T ss_pred CCcccCCHHHHHHHHHHHH-hCCCCcEEEEEEECCCCCCCCcHHHHHHHHHHHHHHhhcc---CC----C-EEEEeChhh
Confidence 8999999999999999987 88999999999999985442 3567777776655432 22 2 455544333
Q ss_pred HHHHHcCCCEEecCccccCCCccc
Q 029062 171 EQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 171 ~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
....+.++|+||||+++||..|..
T Consensus 219 l~~~~~~~d~vR~Gi~lYG~~p~~ 242 (376)
T 3kw3_A 219 FLGSDFYFDLVRPGIALYGVDPHG 242 (376)
T ss_dssp TTCGGGTTTEECCSGGGGTCCTTC
T ss_pred hcCccccCCEEecChhhcCCCCCc
Confidence 222367999999999999987653
No 19
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.90 E-value=2.8e-23 Score=182.82 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=127.4
Q ss_pred cCCcHHHHHHhh--cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
+.++++|+..++ +++. +..++|+.+.++++.+++ .+++++|||++.++.|++.|. .+ +++|||+||||
T Consensus 64 ~vas~~Ea~~l~~aG~~~--~il~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~-~~--~~~V~l~vdtG- 133 (380)
T 3co8_A 64 AVSVLDEGIAIRQAGIDD--FILILGPIDVKYAPIASK----YHFLTTVSSLDWLKSADKILG-KE--KLSVNLAVDTG- 133 (380)
T ss_dssp EESSHHHHHHHHHTTCCC--CEEECSCCCGGGHHHHHH----TTCEEEECCHHHHHHHHHHCT-TC--CEEEEEEBCSS-
T ss_pred EEeeHHHHHHHHhcCCCC--CEEEECCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcc-cC--CceEEEEEcCC-
Confidence 678999999998 4543 345679999999999985 468899999999999999887 55 68999999999
Q ss_pred CCCccCCC-hhhHHHHHHHHHhc-CCCeeEEEEEeeCCCCCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCC
Q 029062 94 EESKSGID-PSSCLGIVEHVRLR-CPNLEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 167 (199)
Q Consensus 94 e~~R~Gv~-~~~~~~l~~~i~~~-~~~L~l~GLmt~~~~~~~~----~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms 167 (199)
++|+|++ ++++.++++.+. + +|+|++.|||||++..+++ ...+++.|.++.+. +.. +..+|+|+|
T Consensus 134 -~~R~G~~~~ee~~~~~~~i~-~~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~~~~~-----~~~--~~~~~~~nS 204 (380)
T 3co8_A 134 -MNRIGVRSKKDLKDEIEFLQ-EHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDG-----LIM--PRYVHVMNS 204 (380)
T ss_dssp -SCSSSBCSHHHHHHHHHHHH-HCTTTEEEEEEECCCC---------CHHHHHHHHHHHTT-----SCC--CSEEECBCH
T ss_pred -CCCCCCCCHHHHHHHHHHHH-hhCCCceEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHhc-----cCC--CCcEEEeCC
Confidence 7999999 899999999998 8 9999999999999974332 23455555443332 111 356899999
Q ss_pred cCHHHHHHc---CCCEEecCccccCCCccc
Q 029062 168 GDFEQAIEM---GSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 168 ~d~~~a~~~---g~t~VR~Gs~ifgd~~~~ 194 (199)
+++..+.+. ++|+||+|+++||+.++.
T Consensus 205 ~g~~~~~~~~~~~~~~vR~G~~lyG~~p~~ 234 (380)
T 3co8_A 205 GAAMYHSKELPGCNSIARVGTVVYGVEPSE 234 (380)
T ss_dssp HHHHHCGGGCTTSCSEEEESTTTTTCCTTT
T ss_pred HHHhcCcccccCCCceEcccHhhhCcCCCc
Confidence 998876677 999999999999988763
No 20
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.88 E-value=5.5e-23 Score=180.04 Aligned_cols=168 Identities=13% Similarity=0.098 Sum_probs=132.7
Q ss_pred cCCcHHHHHHhhcCCC-CceeeeecccchHHHHhHhccCCC-ccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 16 SLIKLLRFIDKYNLPE-DIKWHFVGHLQSNKAKTLLGGVPN-LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~-~i~~h~IG~lq~~ki~~l~~~~~~-~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
..++++|+...+..+- ++ ..+.|.. .++++.++++... .+++++|||++.++.|++.+.+.++ +++|+|+||||
T Consensus 65 ~vas~~Ea~~~~~~G~~~i-i~~~~~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~g- 140 (376)
T 3anu_A 65 AVSTLAEARFFADGGFDDI-LLAYPVP-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGK-RWLVWLKLDCG- 140 (376)
T ss_dssp EESSHHHHHHHHHTTCEEE-EEEEECC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTC-CEEEEEEECCC-
T ss_pred EEccHHHHHHHHHCCCCeE-EEECCCc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCC-ceEEEEEECCC-
Confidence 5679999999983221 22 1245776 7888888742111 4788999999999999998888887 99999999999
Q ss_pred CCCccCCChhh--HHHHHHHHHhcCC---CeeEEEEEeeCCCC---CC-C-----hHHHHHHHHHHHHHHHHHhCCCCCC
Q 029062 94 EESKSGIDPSS--CLGIVEHVRLRCP---NLEFSGLMTIGMPD---YT-S-----TPENFRTLLNCRAEVCKALGMAEDQ 159 (199)
Q Consensus 94 e~~R~Gv~~~~--~~~l~~~i~~~~~---~L~l~GLmt~~~~~---~~-~-----~~~~f~~l~~~~~~l~~~~g~~~~~ 159 (199)
++|+|+++++ +.++++.+. + | +|++.|||||.++. .+ + ...+++.+.++.+.+++. |++ +
T Consensus 141 -~~R~G~~~~~~~~~~l~~~i~-~-~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~ 214 (376)
T 3anu_A 141 -NGRAGVRPTDPAALELAQAIA-N-DAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQA-GVP--C 214 (376)
T ss_dssp ---CSSBCTTSHHHHHHHHHHH-H-SCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHHT-TCC--C
T ss_pred -CCcCCCCCCchhHHHHHHHHh-C-CCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--C
Confidence 7999999987 999999999 8 9 99999999997751 12 1 234788899999999875 876 4
Q ss_pred CEEEecCCcC-HHHHHH-cCCCEEecCccccCCCcc
Q 029062 160 CELSMGMSGD-FEQAIE-MGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 160 ~~lS~Gms~d-~~~a~~-~g~t~VR~Gs~ifgd~~~ 193 (199)
..+|+|+|++ +..+.+ .+.|+||+|+++||+.++
T Consensus 215 ~~vs~Ggs~~~~~~~~~~~~~~~vr~G~~l~~~~~~ 250 (376)
T 3anu_A 215 PQASIGSTPSCSHPIPEMSQLTELHPGNYIFYDLQQ 250 (376)
T ss_dssp CEEEECCHHHHHSCCGGGGGSSEECCCGGGTCCHHH
T ss_pred CEEEEccCHHHhhhhhhcCCceEeccceEEEecccc
Confidence 7899999999 876655 689999999999998754
No 21
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.87 E-value=1e-22 Score=180.65 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=125.7
Q ss_pred cCCcHHHHHHhhcCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC
Q 029062 16 SLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 95 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e~ 95 (199)
+.+++|||.+++..+.+.+++++|+++.++++.+++ .+++++|||++++++|+++ . + +++|||+|||| |
T Consensus 65 ~Va~~~Ea~~lr~aGi~~~Ilvlg~~~~~~~~~~~~----~~l~~~V~s~~~l~~l~~~-~--~--~~~V~lkvDtG--m 133 (395)
T 3hur_A 65 IVSNLDEALELRQADLTLPIWVLGAWDYSDLKLFID----HDIVITIPSLAWLQNLPDF-E--G--TLKVSLAIDTG--M 133 (395)
T ss_dssp EESCHHHHHHHHHTTCCSCEEESSCCCGGGHHHHHH----TTEEEEECCHHHHHTCCCC-S--S--CEEEEEEBCCS--S
T ss_pred EEeeHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHh-c--C--CCcEEEEEcCC--C
Confidence 689999999998333345688999999999999885 6899999999999999887 4 4 68999999999 8
Q ss_pred CccCCChhh-HHHHHHHHHhcCCCeeEEEEEeeCCCCCCC-------hHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCC
Q 029062 96 SKSGIDPSS-CLGIVEHVRLRCPNLEFSGLMTIGMPDYTS-------TPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 167 (199)
Q Consensus 96 ~R~Gv~~~~-~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~-------~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms 167 (199)
+|+|+.|++ +.++++.+. ++|+|++.|||||++.++++ ...|+++|.++.+.++ +. +...|.+-|
T Consensus 134 ~R~G~~~~e~~~~~~~~i~-~~~~l~l~Gl~TH~a~ad~~~~~~~~~~~~Q~~~F~~~~~~l~----~~--~~~~h~aNS 206 (395)
T 3hur_A 134 TRIGFDKADEISAAKKIID-KNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQG----FD--PSLFSMANS 206 (395)
T ss_dssp CSSSBCCHHHHHHHHHHHH-HCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTSC----CC--GGGEECCCH
T ss_pred CCcCCChHHHHHHHHHHHH-hCCCceEEEEEEeCcCCCCCCCcchHHHHHHHHHHHHHHHhcc----CC--CCeEEEcCC
Confidence 999999976 999999998 99999999999999986542 3456666666555432 22 234565544
Q ss_pred cCHHHHHH-cC--CCEEecCccccCCCccc
Q 029062 168 GDFEQAIE-MG--STSVRIGSTIFGPREYA 194 (199)
Q Consensus 168 ~d~~~a~~-~g--~t~VR~Gs~ifgd~~~~ 194 (199)
.......+ .+ +|+||||.++||..|..
T Consensus 207 a~~l~~~~~~~~~~d~vR~Gi~LYG~~p~~ 236 (395)
T 3hur_A 207 ATCIWHHDDPRISFAAIRPGQLISGVNVSN 236 (395)
T ss_dssp HHHHHTTTCTTSCCSEECCCGGGGTCCTTT
T ss_pred HHHhcCcccccccCceEecChhhcCCCCCc
Confidence 33222225 67 99999999999987653
No 22
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.82 E-value=3.3e-20 Score=164.62 Aligned_cols=168 Identities=12% Similarity=0.082 Sum_probs=126.2
Q ss_pred cCCcHHHHHHhhcCCCC-ceeeeecc-cchHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceE-------
Q 029062 16 SLIKLLRFIDKYNLPED-IKWHFVGH-LQSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKV------- 85 (199)
Q Consensus 16 ~~n~~qE~~~k~~~~~~-i~~h~IG~-lq~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~V------- 85 (199)
..++++|+...+..+-+ -.|+|.|+ .+.++++.+++ ..+ +++|||+++++.|++.+.+.++ +++|
T Consensus 84 ~vas~~E~~~~~~~G~~~~~Il~~g~~~~~~~l~~a~~----~~i~~~~vds~~~l~~l~~~a~~~~~-~~~v~lRvn~~ 158 (420)
T 2p3e_A 84 DIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVD----SEILMFNVESRQELDVLNEIAGKLGK-KARIAIRVNPD 158 (420)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECSSCCCHHHHHHHHH----TTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEEC-
T ss_pred EEeCHHHHHHHHHcCCChhHEEEeCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHhcCC-CCcEEEEECCC
Confidence 67889999998833222 35999998 58899998885 456 7999999999999999988887 8999
Q ss_pred -----EEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCC
Q 029062 86 -----LVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAE 157 (199)
Q Consensus 86 -----llqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~ 157 (199)
|++||||++.+|+|++++++.++++.+. .+|+|++.|||||.+... +...++++.+.++++.+++. |++
T Consensus 159 ~~~~~~~~idtG~~~~R~G~~~~e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~- 235 (420)
T 2p3e_A 159 VDPKTHPYIATGMQKSKFGVDIREAQKEYEYAS-KLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQK-GFD- 235 (420)
T ss_dssp ---------------CCSCEEGGGHHHHHHHHH-TCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHT-TCC-
T ss_pred CCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC-
Confidence 5566677344999999999999999998 999999999999988632 23567899999999999876 775
Q ss_pred CCCEEEecCCcCHH-------HHHHcCCCEEecCccccCCCc
Q 029062 158 DQCELSMGMSGDFE-------QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 158 ~~~~lS~Gms~d~~-------~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+..+++|+|...+ .+.+.++++||+|+++||...
T Consensus 236 -~~~l~~Ggg~~~~~~~~~~~~~~~~~~~~vr~g~~~yg~~~ 276 (420)
T 2p3e_A 236 -IKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLENVKAKI 276 (420)
T ss_dssp -CCEEECCCCBCCCCSTTCCCCCHHHHHHHHTTTC--CCSEE
T ss_pred -CCEEEECCCcCcCCCCCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 4678887654422 124567899999999998543
No 23
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.69 E-value=3.2e-16 Score=139.34 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=112.9
Q ss_pred cHHHHHHhh--cCCCCceeeeecccch-HHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC-
Q 029062 19 KLLRFIDKY--NLPEDIKWHFVGHLQS-NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG- 93 (199)
Q Consensus 19 ~~qE~~~k~--~~~~~i~~h~IG~lq~-~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~- 93 (199)
...|+...+ +++ .-+|+|.|+.++ ++++.+++ ..+ +++|||++++++|++.+.+.++ +++|+|+||+|.
T Consensus 71 s~~E~~~~~~~G~~-~~~I~~~g~~k~~~~i~~a~~----~~v~~~~vds~~el~~l~~~a~~~~~-~~~V~lrvn~g~~ 144 (428)
T 2j66_A 71 SAGELALARHAGFS-AENIIFSGPGKKRSELEIAVQ----SGIYCIIAESVEELFYIEELAEKENK-TARVAIRINPDKS 144 (428)
T ss_dssp SHHHHHHHHHTTCC-GGGEEECCSCCCHHHHHHHHH----HTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECSSC
T ss_pred CHHHHHHHHHcCCC-cCeEEEeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhhCC-CceEEEEEcCCCC
Confidence 456666555 333 246999999876 68988885 455 8999999999999999998887 899999999983
Q ss_pred ----------CCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC-C--ChHHHHHHHHHHHHHHHHHhCCCCCCC
Q 029062 94 ----------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQC 160 (199)
Q Consensus 94 ----------e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~-~--~~~~~f~~l~~~~~~l~~~~g~~~~~~ 160 (199)
+.+|+|++++++.++++.+. ++|+|++.|||+|.+... + ...++++.+.++++.+++..|++ +.
T Consensus 145 ~~~~~~~~~~~~srfG~~~~e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~ 221 (428)
T 2j66_A 145 FGSTAIKMGGVPRQFGMDESMLDAVMDAVR-SLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIV--CE 221 (428)
T ss_dssp C--CCCSSSCCCCSSSEEGGGHHHHHHHHH-HCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCC--CS
T ss_pred CCCCccccCCCCCCCCCCHHHHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CC
Confidence 24899999999999999998 999999999999976532 2 35678899999999996555876 57
Q ss_pred EEEecCC
Q 029062 161 ELSMGMS 167 (199)
Q Consensus 161 ~lS~Gms 167 (199)
.+++|+.
T Consensus 222 ~l~~GGG 228 (428)
T 2j66_A 222 CINLGGG 228 (428)
T ss_dssp EEECCCC
T ss_pred EEEeCCC
Confidence 8887764
No 24
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.68 E-value=5.4e-16 Score=138.14 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=114.3
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccch-HHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQS-NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq~-~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
...+|+...+ +++ ..+|+|+|+.++ +.++.+++ ..+ .++|||++++++|++.+.+.++ +++|+|+||+|.
T Consensus 90 as~~E~~~~~~~G~~-~~~I~~~g~~k~~~~i~~a~~----~~i~~~~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~ 163 (434)
T 1twi_A 90 VSGGELYIAKLSNVP-SKKIVFNGNCKTKEEIIMGIE----ANIRAFNVDSISELILINETAKELGE-TANVAFRINPNV 163 (434)
T ss_dssp CSHHHHHHHHHTTCC-GGGEEECCSSCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECCC
T ss_pred eCHHHHHHHHHCCCC-CCcEEEECCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCC
Confidence 4567887777 332 257999999764 67887774 356 8999999999999999998887 999999999873
Q ss_pred ------------CCCccCCChhh--HHHHHHHHHhcCCCeeEEEEEeeCCCC-CC--ChHHHHHHHHHHHHHHHHHhCCC
Q 029062 94 ------------EESKSGIDPSS--CLGIVEHVRLRCPNLEFSGLMTIGMPD-YT--STPENFRTLLNCRAEVCKALGMA 156 (199)
Q Consensus 94 ------------e~~R~Gv~~~~--~~~l~~~i~~~~~~L~l~GLmt~~~~~-~~--~~~~~f~~l~~~~~~l~~~~g~~ 156 (199)
+++|+|+++++ +.++++.+. .+|+|++.|||+|.+.. .+ ...++++.+.++++.+++. |++
T Consensus 164 ~~~~~~~~~tG~~~~rfG~~~~~~~~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~ 241 (434)
T 1twi_A 164 NPKTHPKISTGLKKNKFGLDVESGIAMKAIKMAL-EMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE-GIE 241 (434)
T ss_dssp CTTTCHHHHHHHHHSSCSEESTTSHHHHHHHHHH-HCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CCCCCcccccCCCCCCccCChhhhHHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 36999999988 999999998 99999999999997653 22 3467899999999999886 876
Q ss_pred CCCCEEEecCC
Q 029062 157 EDQCELSMGMS 167 (199)
Q Consensus 157 ~~~~~lS~Gms 167 (199)
+..+|+|++
T Consensus 242 --~~~l~~GGg 250 (434)
T 1twi_A 242 --IEDVNLGGG 250 (434)
T ss_dssp --CSEEECCCC
T ss_pred --CCEEEECCC
Confidence 478888765
No 25
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.65 E-value=1.6e-15 Score=134.91 Aligned_cols=140 Identities=12% Similarity=0.131 Sum_probs=112.6
Q ss_pred CcHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC-
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS- 92 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg- 92 (199)
....|+...+ +++. -.|+|.|+. +.++++.+++ ..+ .++|||++++++|++.+.+.++ +++|+|+||+|
T Consensus 87 as~~E~~~~~~~G~~~-~~i~~~g~~k~~~~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~ 160 (425)
T 2qgh_A 87 VSIGEIQRALKAGIKP-YRIVFSGVGKSAFEIEQALK----LNILFLNVESFMELKTIETIAQSLGI-KARISIRINPNI 160 (425)
T ss_dssp SSHHHHHHHHHTTCCG-GGEEECCTTCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCC
T ss_pred eCHHHHHHHHHcCCCh-hHEEEcCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEeCCC
Confidence 3455655555 4443 458999986 5688998885 233 4699999999999999998887 99999999986
Q ss_pred -----------CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC-C--ChHHHHHHHHHHHHHHHHHhCCCCC
Q 029062 93 -----------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAED 158 (199)
Q Consensus 93 -----------~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~-~--~~~~~f~~l~~~~~~l~~~~g~~~~ 158 (199)
++++|+|++++++.++++.+. ++|+|++.|||+|.+... + ...++++.+.++++.+++. |+.
T Consensus 161 ~~~~~~~~~tg~~~sRfG~~~~e~~~l~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~-- 236 (425)
T 2qgh_A 161 DAKTHPYISTGLKENKFGVGEKEALEMFLWAK-KSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIAL-GID-- 236 (425)
T ss_dssp CCCSCGGGBCCSTTSSSSBCHHHHHHHHHHHH-HCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHT-TCC--
T ss_pred CCCCCcccccCCCCCCCcCCHHHHHHHHHHHH-hCCCccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--
Confidence 458999999999999999998 899999999999976532 2 3567899999999999875 876
Q ss_pred CCEEEecCC
Q 029062 159 QCELSMGMS 167 (199)
Q Consensus 159 ~~~lS~Gms 167 (199)
+..+++|+.
T Consensus 237 ~~~l~~GGG 245 (425)
T 2qgh_A 237 LRFFDVGGG 245 (425)
T ss_dssp CCEEECCCC
T ss_pred CCEEEECCC
Confidence 477888754
No 26
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.59 E-value=1e-14 Score=131.39 Aligned_cols=139 Identities=15% Similarity=0.158 Sum_probs=109.9
Q ss_pred cHHHHHHhh--cCCCCceeeeecccch-HHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC--
Q 029062 19 KLLRFIDKY--NLPEDIKWHFVGHLQS-NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-- 92 (199)
Q Consensus 19 ~~qE~~~k~--~~~~~i~~h~IG~lq~-~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg-- 92 (199)
...|+...+ +++ .-+|+|.|+.++ ++++.+++ ..+ .++|||+++++.|++.+.+.|+ +++|+|+||+|
T Consensus 96 s~~E~~~~~~~G~~-~~~I~~~g~~k~~~~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~ 169 (467)
T 2o0t_A 96 TGGELAVALHASFP-PERITLHGNNKSVSELTAAVK----AGVGHIVVDSMTEIERLDAIAGEAGI-VQDVLVRLTVGVE 169 (467)
T ss_dssp SHHHHHHHHHTTCC-GGGEEECCTTCCHHHHHHHHH----HTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECSEE
T ss_pred CHHHHHHHHHcCCC-cccEEEeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhhCC-CCeEEEEEcCCCC
Confidence 345555544 443 247999999876 88988885 234 6799999999999999998887 89999999985
Q ss_pred ----------CCCCccCCCh--hhHHHHHHHHHhcCCCeeEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhC---
Q 029062 93 ----------GEESKSGIDP--SSCLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALG--- 154 (199)
Q Consensus 93 ----------~e~~R~Gv~~--~~~~~l~~~i~~~~~~L~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g--- 154 (199)
++++|+|+++ +++.++++.+. ++++|++.|||+|.+.. .+...++++.+.++++.+++++|
T Consensus 170 ~~~~~~~~~~~~~srfG~~~~~~e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ 248 (467)
T 2o0t_A 170 AHTHEFISTAHEDQKFGLSVASGAAMAAVRRVF-ATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEK 248 (467)
T ss_dssp EEETEEEEESSCCSSSSEETTTTHHHHHHHHHH-HCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccCCCCCCcCCcCCHHHHHHHHHHHH-hCCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 5589999987 58999999998 89999999999997652 23456789999999999965457
Q ss_pred -CCCCCCEEEecC
Q 029062 155 -MAEDQCELSMGM 166 (199)
Q Consensus 155 -~~~~~~~lS~Gm 166 (199)
+. +..+++|+
T Consensus 249 ~~~--~~~ln~GG 259 (467)
T 2o0t_A 249 TAQ--IATVDLGG 259 (467)
T ss_dssp STT--CCEEECCC
T ss_pred ccC--CCEEEeCC
Confidence 65 46787664
No 27
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.51 E-value=2.8e-13 Score=121.45 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=110.5
Q ss_pred CcHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC-
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS- 92 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg- 92 (199)
....|+...+ +++. -...|-|+. ....++.+++ ..+ .++|||.++++.|++.+.+.|+ +++|+|+||++
T Consensus 103 aS~~E~~~~~~~G~~~-~~I~~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRVn~~~ 176 (443)
T 3vab_A 103 VSQGEIRRALAAGIPA-NRIVFSGVGKTPREMDFALE----AGIYCFNVESEPELEILSARAVAAGK-VAPVSLRINPDV 176 (443)
T ss_dssp SSHHHHHHHHHTTCCG-GGEEEECTTCCHHHHHHHHH----HTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEECCB
T ss_pred eCHHHHHHHHHcCCCh-hhEEEcCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCC
Confidence 4567777665 4432 235777874 5567887775 233 4899999999999999999997 99999999854
Q ss_pred -----------CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCCCCC
Q 029062 93 -----------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAED 158 (199)
Q Consensus 93 -----------~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~~~~ 158 (199)
++.+|+|++++++.++++.+. .+++|++.|||+|.+.. .+...++++.+.++++.+++. |++
T Consensus 177 ~~~~~~~i~tG~~~sRfGi~~~e~~~ll~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~-G~~-- 252 (443)
T 3vab_A 177 DAKTHAKISTGKSENKFGIPRDKARAAYARAA-SLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD-GHN-- 252 (443)
T ss_dssp CTTTCCBC---CCCCSSSEEGGGHHHHHHHHH-HSTTEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHT-TCC--
T ss_pred CCCCCcccccCCCCCCCcCCHHHHHHHHHHHh-hCCCceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--
Confidence 456999999999999999998 89999999999998763 234578899999999999875 876
Q ss_pred CCEEEecC
Q 029062 159 QCELSMGM 166 (199)
Q Consensus 159 ~~~lS~Gm 166 (199)
+..+++|+
T Consensus 253 l~~ldiGG 260 (443)
T 3vab_A 253 IRHVDVGG 260 (443)
T ss_dssp CCEEECCC
T ss_pred CCEEEeCC
Confidence 57888765
No 28
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.49 E-value=3.1e-13 Score=121.13 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=110.2
Q ss_pred CcHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC-
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS- 92 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg- 92 (199)
....|+...+ +++. -...|-|+. ....++.+++ ..+ +++|||+++++.|++.+.+.++ +++|+|+||++
T Consensus 106 aS~~E~~~~~~~G~~~-~~I~~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRvn~~~ 179 (441)
T 3n2b_A 106 VSVGELERVLAAGGDP-SKVVFSGVGKTEAEMKRALQ----LKIKCFNVESEPELQRLNKVAGELGV-KAPISLRINPDV 179 (441)
T ss_dssp SSHHHHHHHHHTTCCG-GGEEECCTTCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCC
T ss_pred eCHHHHHHHHHcCCCc-ccEEEcCCCCCHHHHHHHHH----CCCCEEEEcCHHHHHHHHHHHHhcCC-CcEEEEEeccCC
Confidence 4567776655 4432 235667874 4567887775 233 5799999999999999999887 99999999975
Q ss_pred -----------CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC-C--ChHHHHHHHHHHHHHHHHHhCCCCC
Q 029062 93 -----------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAED 158 (199)
Q Consensus 93 -----------~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~-~--~~~~~f~~l~~~~~~l~~~~g~~~~ 158 (199)
++++|+|++++++.++++.+. .+|+|++.|||+|.+... + ...++++.+.++++.+++. |++
T Consensus 180 ~~~~~~~i~tG~~~sKfG~~~~~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~-G~~-- 255 (441)
T 3n2b_A 180 DAKTHPYISTGLRDNKFGITFDRAAQVYRLAH-SLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAE-GIH-- 255 (441)
T ss_dssp CTTTCHHHHHHHHTSSSSBCGGGHHHHHHHHH-HCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHT-TCC--
T ss_pred CcCCCcccccCCCCCcccCCHHHHHHHHHHHh-cCCCeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--
Confidence 236999999999999999998 899999999999988632 2 3578899999999999874 876
Q ss_pred CCEEEecC
Q 029062 159 QCELSMGM 166 (199)
Q Consensus 159 ~~~lS~Gm 166 (199)
+..+++|+
T Consensus 256 l~~LdiGG 263 (441)
T 3n2b_A 256 IRHLDVGG 263 (441)
T ss_dssp CCEEECCS
T ss_pred CCEEEECC
Confidence 58898875
No 29
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=99.41 E-value=3.6e-13 Score=119.85 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=111.2
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccc-hHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQ-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE 94 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq-~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e 94 (199)
..+.|+...+ +++. -.+.|.|+.+ ..+++.+++. .+. .++|||.++++.|++.+. .++|+|+||+|.+
T Consensus 107 as~~E~~~~r~~G~~~-~~Il~~g~~k~~~~l~~a~~~--~v~-~~~vds~~el~~l~~~a~-----~~~v~lrvd~g~~ 177 (419)
T 2plj_A 107 ATTGEVELVASEGVPA-DLTIHTHPIKRDADIRDALAY--GCN-VFVVDNLNELEKFKAYRD-----DVELLVRLSFRNS 177 (419)
T ss_dssp CSHHHHHHHHHTTCCG-GGEEECCSSCCHHHHHHHHHH--TCC-EEEECSHHHHHTTGGGTT-----TCEEEEEBCC---
T ss_pred eCHHHHHHHHHcCCCh-hhEEEeCCCCCHHHHHHHHHC--CCC-EEEeCCHHHHHHHHHhcC-----CCCEEEEEcCCCC
Confidence 4578888777 4432 2478889864 4778877752 123 399999999999987542 4689999999855
Q ss_pred ------CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHHHHHHhCC-CCCCCEEEe
Q 029062 95 ------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGM-AEDQCELSM 164 (199)
Q Consensus 95 ------~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~l~~~~g~-~~~~~~lS~ 164 (199)
++|+|++++++.++++.+. .. +|++.|||+|.+.... ...++++.+.++++.+++. |+ . +..+++
T Consensus 178 ~~~~~~~~RfG~~~~e~~~~~~~~~-~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-G~~~--~~~l~~ 252 (419)
T 2plj_A 178 EAFADLSKKFGCSPEQALVIIETAK-EW-NIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVER-GLPA--LSTLDI 252 (419)
T ss_dssp ------CCCSCBCHHHHHHHHHHHH-HT-TCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHT-TCCC--CCEEEC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHH-hC-CCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCC--CCEEEE
Confidence 7999999999999999998 77 8999999999987432 2456888888899988875 88 5 466765
Q ss_pred cCC-c-CHH---HHHHcCCCEEecCccccCC
Q 029062 165 GMS-G-DFE---QAIEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 165 Gms-~-d~~---~a~~~g~t~VR~Gs~ifgd 190 (199)
|+. + .|. ...+..+++||+|...|++
T Consensus 253 GGG~~~~y~~~~~~~~~~~~~vr~~i~~y~~ 283 (419)
T 2plj_A 253 GGGFPVNYTQQVMPIDQFCAPINEALSLLPE 283 (419)
T ss_dssp CCCCCCCSSSCCCCHHHHHHHHHHHHTTSCT
T ss_pred CCCcCcCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 443 2 221 0012234566776666654
No 30
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.41 E-value=2.7e-13 Score=118.40 Aligned_cols=136 Identities=9% Similarity=0.086 Sum_probs=103.7
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccc-hHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQ-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE 94 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq-~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~e 94 (199)
..+.|+...+ +++. -.+++.|+.+ .++++.+++. .+. .++|||.++++.|++.+. .++|+|+||+|.+
T Consensus 69 as~~E~~~~~~~G~~~-~~I~~~~~~k~~~~l~~a~~~--~v~-~~~vds~~~l~~l~~~~~-----~~~v~lrv~~~~~ 139 (372)
T 2nva_A 69 ASSSEIKKVIQIGVSP-SRIIFAHTMKTIDDLIFAKDQ--GVD-IATFDSSFELDKIHTYHP-----NCKMILRIRCDDP 139 (372)
T ss_dssp CSHHHHHHHHHHTCCG-GGEEECCSCCCHHHHHHHHHH--TCC-EEEECSHHHHHHHHHHCT-----TCEEEEEBCCCCT
T ss_pred cCHHHHHHHHHcCCCH-HHEEECCCCCCHHHHHHHHHC--CCC-EEEeCCHHHHHHHHHhCC-----CCeEEEEEecCCC
Confidence 4678888777 4432 2478889875 4778877752 123 379999999999998642 4689999999842
Q ss_pred ------CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEec
Q 029062 95 ------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGMAEDQCELSMG 165 (199)
Q Consensus 95 ------~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~G 165 (199)
.+|+|++++++.++++.++ .. +|++.|||+|.+.... ....+++.+.++++.+++. |++ +..+++|
T Consensus 140 ~~~~~~~~R~G~~~~~~~~~~~~~~-~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~~~~G 214 (372)
T 2nva_A 140 NATVQLGNKFGANEDEIRHLLEYAK-QL-DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISV-GHK--PYILDIG 214 (372)
T ss_dssp TCSBCCTTTSSBCGGGHHHHHHHHH-HT-TCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHH-TCC--CCEEECC
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHH-Hc-CCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CcEEEeC
Confidence 2899999999999999998 77 8999999999886432 2456788888899988875 876 4677777
Q ss_pred CC
Q 029062 166 MS 167 (199)
Q Consensus 166 ms 167 (199)
++
T Consensus 215 Gg 216 (372)
T 2nva_A 215 GG 216 (372)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 31
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=99.25 E-value=2.2e-11 Score=108.31 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=95.1
Q ss_pred CcHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
..+.|+...+ +++.+ ...|-|+. ....++.+++ ..+ .++|||.++++.|++.+ . +++|+|+||||.
T Consensus 90 as~~E~~~~~~~G~~~~-~iv~~g~~k~~~~l~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lrid~g~ 159 (425)
T 1f3t_A 90 ASNTEIQRVRGIGVPPE-KIIYANPCKQISHIRYARD----SGVDVMTFDCVDELEKVAKTH----P-KAKMVLRISTDD 159 (425)
T ss_dssp CSHHHHHHHHHTTCCGG-GEEECCSSCCHHHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCC--
T ss_pred eCHHHHHHHHHcCCChh-hEEEcCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhC----C-CCcEEEEEcCCC
Confidence 4578888777 44322 23444665 3456777775 234 59999999999998753 2 579999999972
Q ss_pred C------CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEe
Q 029062 94 E------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGMAEDQCELSM 164 (199)
Q Consensus 94 e------~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~ 164 (199)
. ++|+|++++++.++++.++ .. +|++.|||+|.+.... ...++++.+..+++.+++. |+. +..++.
T Consensus 160 ~~~~~~~~~RfG~~~~~~~~~~~~~~-~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~-G~~--~~~l~i 234 (425)
T 1f3t_A 160 SLARCRLSVKFGAKVEDCRFILEQAK-KL-NIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTEL-GFN--MHILDI 234 (425)
T ss_dssp --------CCSCBCHHHHHHHHHHHH-HT-TCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHT-TCC--CCEEEC
T ss_pred CCccCCCCCcCCCCHHHHHHHHHHHH-hC-CCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEe
Confidence 2 6899999999999999998 76 8999999999987432 2345667777777777764 876 356654
Q ss_pred c
Q 029062 165 G 165 (199)
Q Consensus 165 G 165 (199)
|
T Consensus 235 G 235 (425)
T 1f3t_A 235 G 235 (425)
T ss_dssp C
T ss_pred C
Confidence 4
No 32
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=99.20 E-value=5.2e-11 Score=106.77 Aligned_cols=135 Identities=12% Similarity=0.096 Sum_probs=97.8
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccc-hHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQ-SNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq-~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
..+.|+...+ +++.+ ...|-|+.+ ...++.+++ ..+ .++|||.++++.|++.+ . +++|+|+||+|.
T Consensus 90 aS~~E~~~~~~aG~~~~-~iv~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lRin~g~ 159 (448)
T 3btn_A 90 SSKNEMALVQELGVSPE-NIIFTSPCKQVSQIKYAAK----VGVNIMTCDNEIELKKIARNH----P-NAKVLLHIATED 159 (448)
T ss_dssp SSHHHHHHHHHTTCCGG-GEEECCSSCCHHHHHHHHH----HTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCCCC
T ss_pred eCHHHHHHHHHcCCChh-hEEEcCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHhC----C-CCeEEEEEecCC
Confidence 4578887776 45432 234456653 455766664 344 58999999999998753 3 579999999984
Q ss_pred C------CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEe
Q 029062 94 E------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSM 164 (199)
Q Consensus 94 e------~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~ 164 (199)
. ++|+|++++++.++++.++ .. +|++.|||+|.+... +...++++.+..+++.+++. |+. +..++.
T Consensus 160 ~~~~~~~~~RfG~~~~~~~~~~~~~~-~~-~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~~~~~-G~~--~~~ldi 234 (448)
T 3btn_A 160 NIGGEDGNMKFGTTLKNCRHLLECAK-EL-DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEF-GFT--MNMLDI 234 (448)
T ss_dssp --------CCCCBCHHHHHHHHHHHH-HH-TCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHT-TCC--CCEEEC
T ss_pred CccCCCCCCcCCCCHHHHHHHHHHHH-hC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEe
Confidence 4 6999999999999999998 77 899999999998742 23456777777888877764 876 467754
Q ss_pred -cCC
Q 029062 165 -GMS 167 (199)
Q Consensus 165 -Gms 167 (199)
|+.
T Consensus 235 GGG~ 238 (448)
T 3btn_A 235 GGGF 238 (448)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 444
No 33
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=99.16 E-value=5.1e-10 Score=104.54 Aligned_cols=144 Identities=11% Similarity=0.080 Sum_probs=106.5
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccchHHHHhHhcc-CCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe----
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGG-VPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN---- 90 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~-~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn---- 90 (199)
.+..|+.... +++.+....+-|......++.+++. -...++.++|||++.++.|++.|++.|+ +++|+|+||
T Consensus 133 aS~gEL~~al~aG~~~e~iIv~nG~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g~-~~~V~LRInp~~~ 211 (648)
T 3n2o_A 133 GSKPELLAVLAMAQHASSVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGV-TPRLGIRIRLASQ 211 (648)
T ss_dssp CSHHHHHHHHHHTSSSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTC-CCEEEEEBCCSTT
T ss_pred cCHHHHHHHHHcCCCCCcEEEecCCCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEEECCCC
Confidence 3456776655 5554322344465334456655521 0124578899999999999999999998 999999997
Q ss_pred -------CCCCCCccCCChhhHHHHHHHHHhcCCCee-EEEEEeeCCCC-C--CChHHHHHHHHHHHHHHHHHhCCCCCC
Q 029062 91 -------TSGEESKSGIDPSSCLGIVEHVRLRCPNLE-FSGLMTIGMPD-Y--TSTPENFRTLLNCRAEVCKALGMAEDQ 159 (199)
Q Consensus 91 -------tg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~-l~GLmt~~~~~-~--~~~~~~f~~l~~~~~~l~~~~g~~~~~ 159 (199)
||++.+|+|++++++.++++.++ ++++|. +.||++|.+.. . +.....++.+.++++.+++. |++ +
T Consensus 212 ~~~~~i~TGg~~SKFGi~~~e~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~~-G~~--l 287 (648)
T 3n2o_A 212 GAGKWQASGGEKSKFGLSASQVLNVISRLK-KENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRTL-GAN--I 287 (648)
T ss_dssp STTTTCSSSSCCCCCCBCHHHHHHHHHHHH-HTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHHT-TCC--C
T ss_pred CCCCccccCCCCCcCcCCHHHHHHHHHHHH-hCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--C
Confidence 45567999999999999999998 899997 99999887653 2 23567788888888888864 876 5
Q ss_pred CEEEecC
Q 029062 160 CELSMGM 166 (199)
Q Consensus 160 ~~lS~Gm 166 (199)
..+++|+
T Consensus 288 ~~LDiGG 294 (648)
T 3n2o_A 288 TYFDVGG 294 (648)
T ss_dssp CEEECCS
T ss_pred cEEEeCC
Confidence 7888764
No 34
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=99.16 E-value=9.8e-11 Score=102.59 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=87.7
Q ss_pred CcHHHHHHhh--cCCCCceeeeeccc-chHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~l-q~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
..+.|+...+ +++. -+..+.|+. ....++.+++ ..+ .++|||.++++.|++.+.+ +++|+|+||++.
T Consensus 67 as~~E~~~~~~~G~~~-~~Il~~~~~k~~~~l~~a~~----~~v~~~~vds~~el~~l~~~a~~----~~~v~lrv~~~~ 137 (386)
T 2yxx_A 67 VTKGELLAAKLAGVPS-HTVVWNGNGKSRDQMEHFLR----EDVRIVNVDSFEEMEIWRELNPE----GVEYFIRVNPEV 137 (386)
T ss_dssp CSHHHHHHHHHTTCCG-GGEEECCSCCCHHHHHHHHH----TTCCEEEECCHHHHHHHHHHCCT----TCEEEEEEECCC
T ss_pred cCHHHHHHHHHcCCCh-hhEEEeCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhcCc----CCeEEEEECCCC
Confidence 4678888877 4432 126677885 5677887775 456 8999999999999987643 368999998763
Q ss_pred C------------CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHHH
Q 029062 94 E------------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEV 149 (199)
Q Consensus 94 e------------~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~l 149 (199)
+ ++|+|+++++ .++++ . ++++|++.|||+|.+.... ...++++++.++.+.+
T Consensus 138 ~~~~h~~i~tG~~~~RfG~~~~~-~~~~~--~-~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l 204 (386)
T 2yxx_A 138 DAKTHPHISTGLKKHKFGIPLED-LDSFM--E-RFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY 204 (386)
T ss_dssp CTTTSHHHHHHHHHSSSSEEGGG-HHHHH--H-HHTTSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCCCCCCCChhH-HHHHh--h-ccCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 2 4899999988 88888 5 6889999999999987432 2345666666665555
No 35
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=99.14 E-value=4.4e-10 Score=105.22 Aligned_cols=144 Identities=15% Similarity=0.076 Sum_probs=105.9
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccchHHHHhHhcc-CCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe----
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLLGG-VPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN---- 90 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~~~-~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn---- 90 (199)
.+..|+.... +++.+....+-|......++.+++. ....++.++|||++.++.|++.+++.|+ +++|+|+||
T Consensus 150 aS~gEl~~al~aG~~p~~iIv~nG~K~~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~~g~-~~~V~LRVnp~~~ 228 (666)
T 3nzq_A 150 GSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNV-VPRLGVRARLASQ 228 (666)
T ss_dssp SSHHHHHHHHHHHTTSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTC-CCCEEEEBCCSSS
T ss_pred eCHHHHHHHHHcCCCCCcEEEEcCCCCHHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEEecCC
Confidence 4566776655 5543222333464334456656521 0124678899999999999999999997 899999996
Q ss_pred -------CCCCCCccCCChhhHHHHHHHHHhcCCCee-EEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCCCC
Q 029062 91 -------TSGEESKSGIDPSSCLGIVEHVRLRCPNLE-FSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQ 159 (199)
Q Consensus 91 -------tg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~-l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~~~ 159 (199)
||++.+|+|++++++.++++.++ ++++|+ +.||++|.+... +.....++.+.++++.+++ .|++ +
T Consensus 229 ~~~~~i~TG~~~SKFGi~~~e~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~l~~~L~~-~G~~--l 304 (666)
T 3nzq_A 229 GSGKWQSSGGEKSKFGLAATQVLQLVETLR-EAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHK-LGVN--I 304 (666)
T ss_dssp CSSTTCSSSSSCCCSCBCHHHHHHHHHHHH-HTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHT-TTCC--C
T ss_pred CCcCccccCCCCCcCcCCHHHHHHHHHHHH-hCCCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCC--C
Confidence 45556999999999999999998 999997 999999887632 2356778888888888875 4876 5
Q ss_pred CEEEecC
Q 029062 160 CELSMGM 166 (199)
Q Consensus 160 ~~lS~Gm 166 (199)
..+++|+
T Consensus 305 ~~LDiGG 311 (666)
T 3nzq_A 305 QCFDVGG 311 (666)
T ss_dssp CEEECCS
T ss_pred CEEEeCC
Confidence 7887664
No 36
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=99.13 E-value=8.5e-10 Score=102.61 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=101.2
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccchHHHHhHh---ccCCCccEEEecCcHHHHHHHHHHHHhcC-CCCceEEEEEeC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQSNKAKTLL---GGVPNLDMVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVNT 91 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq~~ki~~l~---~~~~~~~~i~sVDs~~~a~~l~~~a~~~g-~~~i~VllqInt 91 (199)
.+..|+.... +.+.. ...+-|......++.++ + ...++.++|||++.++.|++.+++.| + +++|+|+||.
T Consensus 111 aS~~El~~al~aG~~~~-~Iv~nG~K~~e~I~~Al~a~~--~g~~v~ivVDS~~ELe~l~~~a~~~g~~-~~~V~LRInp 186 (619)
T 3nzp_A 111 GSKAELLLAMAYNNEGA-PITVNGFKDRELINIGFIAAE--MGHNITLTIEGLNELEAIIDIAKERFKP-KPNIGLRVRL 186 (619)
T ss_dssp CSHHHHHHHHHHSCTTS-EEEECSCCCHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHTTSCSC-CCEEEEEBCC
T ss_pred eCHHHHHHHHhcCCCCC-EEEeCCCCCHHHHHHHHhhhh--cCCcEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEEEec
Confidence 4567776655 55432 23344643333355443 1 12467899999999999999999988 7 8999999984
Q ss_pred -----------CCCCCccCCChhhHHHHHHHHHhcCCCe-eEEEEEeeCCCC---CCChHHHHHHHHHHHHHHHHHhCC-
Q 029062 92 -----------SGEESKSGIDPSSCLGIVEHVRLRCPNL-EFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGM- 155 (199)
Q Consensus 92 -----------g~e~~R~Gv~~~~~~~l~~~i~~~~~~L-~l~GLmt~~~~~---~~~~~~~f~~l~~~~~~l~~~~g~- 155 (199)
|+..+|+|++++++.++++.++ ++++| ++.||++|.+.. .+.....++.+.++++.+++. |+
T Consensus 187 ~~~g~~~~~~TGg~~sKFGi~~ee~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~~-G~~ 264 (619)
T 3nzp_A 187 HSAGVGIWAKSGGINSKFGLTSTELIEAVNLLK-ENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKM-GAK 264 (619)
T ss_dssp TTC-------------CCSBCHHHHHHHHHHHH-HTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHHHHHT-TCT
T ss_pred CCCCCcccccCCCCCccCcCCHHHHHHHHHHHH-hCCCCCceeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 5556899999999999999998 89988 599999997752 234577888889999999874 87
Q ss_pred CCCCCEEEecC
Q 029062 156 AEDQCELSMGM 166 (199)
Q Consensus 156 ~~~~~~lS~Gm 166 (199)
+ +..+.+|+
T Consensus 265 ~--l~~LDiGG 273 (619)
T 3nzp_A 265 N--LKAINLGG 273 (619)
T ss_dssp T--CCEEEEES
T ss_pred C--CCEEEeCC
Confidence 5 57776553
No 37
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=99.12 E-value=1.4e-09 Score=98.13 Aligned_cols=134 Identities=10% Similarity=0.080 Sum_probs=97.4
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccc-hHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQ-SNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 93 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq-~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg~ 93 (199)
....|+...+ +++.+ ...|-|+.+ ...++.+++ ..+ .++|||.++++.|++.+ . +++|+|+||+|.
T Consensus 100 aS~~E~~~~~~aG~~~~-~iv~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~V~lRvn~g~ 169 (471)
T 2oo0_A 100 ASKTEIQLVQSLGVPPE-RIIYANPCKQVSQIKYAAN----NGVQMMTFDSEVELMKVARAH----P-KAKLVLRIATDD 169 (471)
T ss_dssp CSHHHHHHHHHTTCCGG-GEEECCSSCCHHHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEECCCC
T ss_pred eCHHHHHHHHHcCCChh-hEEEeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHhC----C-CCeEEEEEcCCC
Confidence 4577887776 45432 234456653 456776664 233 58999999999998753 2 579999999972
Q ss_pred C------CCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC-C--ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEe
Q 029062 94 E------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSM 164 (199)
Q Consensus 94 e------~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~-~--~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~ 164 (199)
. ++|+|++++++.++++.++ .. +|++.|||+|.+... + ...++++.+..+++.+++. |+. +..+..
T Consensus 170 ~~~~~~~~~RfG~~~~~~~~~~~~~~-~~-~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~~~~-G~~--~~~ldi 244 (471)
T 2oo0_A 170 SKAVCRLSVKFGATLRTSRLLLERAK-EL-NIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEV-GFS--MYLLDI 244 (471)
T ss_dssp TTSSBCCTTTSCBCHHHHHHHHHHHH-HT-TCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHH-TCC--CCEEEC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH-hC-CCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEE
Confidence 2 6899999999999999998 77 899999999998743 2 3455777777888888775 876 356654
Q ss_pred cC
Q 029062 165 GM 166 (199)
Q Consensus 165 Gm 166 (199)
|+
T Consensus 245 GG 246 (471)
T 2oo0_A 245 GG 246 (471)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 38
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=99.12 E-value=9.8e-10 Score=97.85 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=96.2
Q ss_pred CcHHHHHHhh--cCCCCceeeeecccch-HHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeCC--
Q 029062 18 IKLLRFIDKY--NLPEDIKWHFVGHLQS-NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-- 92 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~i~~h~IG~lq~-~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIntg-- 92 (199)
....|+...+ +++. -...|-|+.++ ..++.+++. ... .++|||++++++|++.+ . ..+|+|+||++
T Consensus 90 aS~~E~~~~~~~G~~~-~~Ii~~g~~k~~~ei~~a~~~--gv~-~~~vds~~el~~l~~~~----~-~~~v~lRvn~~~~ 160 (424)
T 7odc_A 90 ASKTEIQLVQGLGVPA-ERVIYANPCKQVSQIKYAASN--GVQ-MMTFDSEIELMKVARAH----P-KAKLVLRIATDDS 160 (424)
T ss_dssp CSHHHHHHHHHTTCCG-GGEEECCSSCCHHHHHHHHHT--TCC-EEEECSHHHHHHHHHHC----T-TCEEEEEBCC---
T ss_pred CCHHHHHHHHHcCCCh-hhEEECCCCCCHHHHHHHHHC--CCC-EEEeCCHHHHHHHHHhC----C-CCeEEEEECCCCC
Confidence 4567777655 4442 24567788554 467777752 222 46899999999999864 2 47899999986
Q ss_pred ----CCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCC---CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEec
Q 029062 93 ----GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 165 (199)
Q Consensus 93 ----~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~---~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~G 165 (199)
..++|+|++++++.++++.++ + ++|++.|||+|.+... +...++++.+.++++.+++. |++ +..+..|
T Consensus 161 ~~~~~~~skfG~~~~~~~~~~~~~~-~-~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~-G~~--~~~ldiG 235 (424)
T 7odc_A 161 KAVCRLSVKFGATLKTSRLLLERAK-E-LNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEV-GFS--MHLLDIG 235 (424)
T ss_dssp --------CCCBCHHHHHHHHHHHH-H-TTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHH-TCC--CCEEECC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH-h-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeC
Confidence 236999999999999999998 7 4899999999988632 23466777888888877764 876 4777766
Q ss_pred C
Q 029062 166 M 166 (199)
Q Consensus 166 m 166 (199)
+
T Consensus 236 G 236 (424)
T 7odc_A 236 G 236 (424)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.06 E-value=7.1e-10 Score=98.57 Aligned_cols=131 Identities=17% Similarity=0.223 Sum_probs=90.8
Q ss_pred CcHHHHHHhh--cCCCC---ceeeeecc-cchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEe-
Q 029062 18 IKLLRFIDKY--NLPED---IKWHFVGH-LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN- 90 (199)
Q Consensus 18 n~~qE~~~k~--~~~~~---i~~h~IG~-lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqIn- 90 (199)
..+.|+...+ +++.. -...|-|+ .....++.+++ ..+.++|||.++++.|++.+.+ .++.|+||
T Consensus 75 as~~E~~~~~~~G~~~~~~~~~Iv~~g~~k~~~~l~~a~~----~~i~~~vds~~el~~l~~~a~~-----~~v~lRv~~ 145 (425)
T 1knw_A 75 VSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSE----LQIPVNAGSVDMLDQLGQVSPG-----HRVWLRVNP 145 (425)
T ss_dssp CSHHHHHHHHHTTCCTTTCTTSEEEEESCCCHHHHHHHHH----HTCCEEESSHHHHHHHHHHSTT-----CEEEEEEEC
T ss_pred cCHHHHHHHHHcCCCCCCCcCeEEEECCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhhhh-----ccEEEEECC
Confidence 4678888777 44420 13455575 34567877774 3455999999999999987642 36777776
Q ss_pred -----------CCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC--hHHHHHHHHHHHHHHHHHhCCCC
Q 029062 91 -----------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--TPENFRTLLNCRAEVCKALGMAE 157 (199)
Q Consensus 91 -----------tg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~--~~~~f~~l~~~~~~l~~~~g~~~ 157 (199)
||..++|+|++++++.++++.++ ++ +|++.|||+|.+...+. ..++++.+ .+.+++ .|++
T Consensus 146 ~~~~~~h~~i~tG~~~~RfG~~~~~~~~~~~~~~-~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~---~~~~~~-~G~~- 218 (425)
T 1knw_A 146 GFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQ-RH-HLQLVGIHMHIGSGVDYAHLEQVCGAM---VRQVIE-FGQD- 218 (425)
T ss_dssp SCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHH-HT-TCEEEEEECCCCCTTCHHHHHHHHHHH---HHHHHH-HTCC-
T ss_pred CCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHH-HC-CCCEEEEEEECCCCCCHHHHHHHHHHH---HHHHHH-hCCC-
Confidence 45558999999999999999998 88 99999999999875432 23344433 444444 3776
Q ss_pred CCCEEEec
Q 029062 158 DQCELSMG 165 (199)
Q Consensus 158 ~~~~lS~G 165 (199)
+..++.|
T Consensus 219 -~~~ln~G 225 (425)
T 1knw_A 219 -LQAISAG 225 (425)
T ss_dssp -CSEEECC
T ss_pred -CcEEEeC
Confidence 4566554
No 40
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=98.14 E-value=4.4e-06 Score=72.75 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=83.1
Q ss_pred cHHHHHHhh-cCCCCceeeeecccch-HHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEE-------
Q 029062 19 KLLRFIDKY-NLPEDIKWHFVGHLQS-NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV------- 89 (199)
Q Consensus 19 ~~qE~~~k~-~~~~~i~~h~IG~lq~-~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqI------- 89 (199)
...|+.... .++. +++|.|+.++ ..++.+++. ...+++||.++++.|++.+.+ .+|.|+|
T Consensus 59 S~~E~~~~~~~~~~--~ii~~~~~k~~~el~~a~~~----g~~i~vds~~el~~l~~~a~~-----~~v~lRvnp~~~~~ 127 (365)
T 3mt1_A 59 SLFEVRLGRERFGK--ETHAYSVAYGDNEIDEVVSH----ADKIIFNSISQLERFADKAAG-----IARGLRLNPQVSSS 127 (365)
T ss_dssp SHHHHHHHHHHTCS--EEEEEESCCCTTTHHHHHHH----CSEEEESSHHHHHHHGGGGTT-----SEEEEEECCC----
T ss_pred CHHHHHHHHhhCCC--ceEEECCCCCHHHHHHHHHc----CCEEEECCHHHHHHHHHHhcc-----CCEEEEEecCCCCC
Confidence 345655444 4553 7888898765 447777752 246689999999999987754 3455554
Q ss_pred -----eCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEe
Q 029062 90 -----NTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSM 164 (199)
Q Consensus 90 -----ntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~ 164 (199)
+||+..+|+|++++++.+. .++ ++.||++|.+..... .+.|....+....+....|.+ ...+..
T Consensus 128 ~~~~i~tg~~~sKFG~~~~~~~~~------~l~--~~~Glh~HigSq~~~-~~~~~~~~~~~~~~~~~~g~~--~~~ldi 196 (365)
T 3mt1_A 128 SFDLADPARPFSRLGEWDVPKVER------VMD--RINGFMIHNNCENKD-FGLFDRMLGEIEERFGALIAR--VDWVSL 196 (365)
T ss_dssp ------------CCSBCCHHHHHT------TGG--GCSEEEECCC--CCS-HHHHHHHHHHHHHHHHHHHTT--SSEEEC
T ss_pred CCccccCCCCCCcCCCCHHHHhhh------ccC--CeEEEEEeCCCCCCC-HHHHHHHHHHHHHHHHHhCCC--CCEEEe
Confidence 4665569999999877642 222 689999998763222 222332222222222222444 466665
Q ss_pred cC-C------cCHH---HHH-----HcCC-CEEecCccccCCCc
Q 029062 165 GM-S------GDFE---QAI-----EMGS-TSVRIGSTIFGPRE 192 (199)
Q Consensus 165 Gm-s------~d~~---~a~-----~~g~-t~VR~Gs~ifgd~~ 192 (199)
|+ - .|++ .++ +.+. -.+-||.++-++..
T Consensus 197 GGG~~i~y~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lv~~ag 240 (365)
T 3mt1_A 197 GGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGEASITKST 240 (365)
T ss_dssp CSCCCTTSTTCCHHHHHHHHHHHHHHHTCEEEECCSHHHHTTSE
T ss_pred CCCcCCCCCCCCHHHHHHHHHHHHHHhCcEEEEeCchHhhccce
Confidence 53 1 1222 111 1233 35668888777654
No 41
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=98.12 E-value=8.3e-06 Score=72.40 Aligned_cols=151 Identities=11% Similarity=0.010 Sum_probs=89.4
Q ss_pred cHHHHHHhh-cCCCCceeeeecccchH-HHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEEEEEeC-----
Q 029062 19 KLLRFIDKY-NLPEDIKWHFVGHLQSN-KAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT----- 91 (199)
Q Consensus 19 ~~qE~~~k~-~~~~~i~~h~IG~lq~~-ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~VllqInt----- 91 (199)
...|+.... .++ -+++|.|+.++. .++.+++. .+.++|||+++++.|++.+. +.+|+|+||+
T Consensus 99 S~~El~~a~~~~~--~~Ii~~~~~k~~~el~~A~~~----g~~i~vds~~EL~~l~~~a~-----~~~v~lRvnp~~~~~ 167 (418)
T 3n29_A 99 GLWEAKFAKEYMD--KEIHTYSPAFKEDEIGEIASL----SHHIVFNSLAQFHKFQSKTQ-----KNSLGLRCNVEFSLA 167 (418)
T ss_dssp SHHHHHHHHHHTC--SEEEEEESSCCHHHHHHHHHH----CSEEEESSHHHHHHHGGGCT-----TSEEEEEBCCCCC--
T ss_pred CHHHHHHHHhhCC--CCEEEECCCCCHHHHHHHHHc----CCeEEECCHHHHHHHHHhcC-----CCCEEEEEeCCCCCC
Confidence 345555444 344 377888998654 47777742 33568999999999988654 4689999975
Q ss_pred -------CCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEe
Q 029062 92 -------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSM 164 (199)
Q Consensus 92 -------g~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~ 164 (199)
|+..+|+|++++++.+ . .++ ++.||++|.+.. .. .+.|....+....+-...|.+ ...+..
T Consensus 168 ~~~~i~tg~~~sKFGi~~~~~~~-----~-~l~--~l~Glh~HigSq-~~-~~~~~~~~~~~~~~~~~~g~~--l~~ldi 235 (418)
T 3n29_A 168 PKELYNPCGRYSRLGIRAKDFEN-----V-DLN--AIEGLHFHALCE-ES-ADALEAVLKVFEEKFGKWIGQ--MKWVNF 235 (418)
T ss_dssp --------CTTCCSSBCGGGGTT-----C-CCT--TCCEEECCCCSS-BC-HHHHHHHHHHHHHHHGGGTTT--CSEEEC
T ss_pred CCcccccCCCCCcCcCCHHHHHH-----h-hcC--ceEEEEEecCCC-CC-HHHHHHHHHHHHHHHHHhCCC--CCEEEe
Confidence 4445999999987644 1 233 789999998765 22 233333222222221223544 466766
Q ss_pred cC----C---cCHH-HH--H-----HcCC-CEEecCccccCCCc
Q 029062 165 GM----S---GDFE-QA--I-----EMGS-TSVRIGSTIFGPRE 192 (199)
Q Consensus 165 Gm----s---~d~~-~a--~-----~~g~-t~VR~Gs~ifgd~~ 192 (199)
|+ + .|++ .+ + +.+. -.+-||.+|-++..
T Consensus 236 GGGf~i~y~~~~~~~~~~~i~~~~~~~~~~ii~EPGR~lva~ag 279 (418)
T 3n29_A 236 GGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTG 279 (418)
T ss_dssp CSCBCTTSTTCCHHHHHHHHHHHHHHHTCEEEECCSHHHHTTSE
T ss_pred CCCcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEeCCHHhhhhcE
Confidence 53 1 1232 11 1 1233 35567887777654
No 42
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=89.45 E-value=1.2 Score=36.41 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=47.4
Q ss_pred eeEEEEEeeCCC-CC-CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecCccccCCCcc
Q 029062 119 LEFSGLMTIGMP-DY-TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 119 L~l~GLmt~~~~-~~-~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
+.+.-+||..|. .. ......+++++++++.+.+. |.+. ...+-.|.+.+ .+.+.+.|++.+=+||+||+..++
T Consensus 157 vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~-~~~~-~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp 232 (246)
T 3inp_A 157 IDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISST-DRDI-LLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSY 232 (246)
T ss_dssp CSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHH-TSCC-EEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCH
T ss_pred CCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhc-CCCe-eEEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCH
Confidence 445557776443 21 12344567777777777654 6542 13567788766 345578999999999999986554
No 43
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=86.48 E-value=1.9 Score=34.73 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=76.0
Q ss_pred CceeeeecccchHHHHhHhccCCCccEEE-ecCc-HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHH
Q 029062 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVE-GVGN-EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIV 109 (199)
Q Consensus 32 ~i~~h~IG~lq~~ki~~l~~~~~~~~~i~-sVDs-~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~ 109 (199)
.+..|++-.-..+-++.+++ ..++++. -.+. ...+.++-+.+++.|. . +-+-+|.+ -+.+. +
T Consensus 59 ~~dvhLmv~dp~~~i~~~~~--aGAd~itvh~Ea~~~~~~~~i~~i~~~G~-k--~gv~lnp~-------tp~~~----~ 122 (231)
T 3ctl_A 59 PLDCHLMVTRPQDYIAQLAR--AGADFITLHPETINGQAFRLIDEIRRHDM-K--VGLILNPE-------TPVEA----M 122 (231)
T ss_dssp CEEEEEESSCGGGTHHHHHH--HTCSEEEECGGGCTTTHHHHHHHHHHTTC-E--EEEEECTT-------CCGGG----G
T ss_pred cEEEEEEecCHHHHHHHHHH--cCCCEEEECcccCCccHHHHHHHHHHcCC-e--EEEEEECC-------CcHHH----H
Confidence 35666654432233554443 1245442 1222 2235566666667775 4 44445654 12222 2
Q ss_pred HHHHhcCCCeeEEEEEeeCCC-CC-CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecC-c
Q 029062 110 EHVRLRCPNLEFSGLMTIGMP-DY-TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIG-S 185 (199)
Q Consensus 110 ~~i~~~~~~L~l~GLmt~~~~-~~-~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~G-s 185 (199)
+.+. +.+.+.-+||..+. .. .......++++++++.+.+. |+.. ...+-.|.+.+ .....+.|++.+=+| |
T Consensus 123 ~~~l---~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~-~~~~-~I~VdGGI~~~~~~~~~~aGAd~~V~G~s 197 (231)
T 3ctl_A 123 KYYI---HKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRERE-GLEY-EIEVDGSCNQATYEKLMAAGADVFIVGTS 197 (231)
T ss_dssp TTTG---GGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHH-TCCC-EEEEESCCSTTTHHHHHHHTCCEEEECTT
T ss_pred HHHH---hcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhcc-CCCc-eEEEECCcCHHHHHHHHHcCCCEEEEccH
Confidence 2222 24557778887664 21 22345566777777666554 6542 13446666554 445678999999999 9
Q ss_pred cccCCCc
Q 029062 186 TIFGPRE 192 (199)
Q Consensus 186 ~ifgd~~ 192 (199)
+||+..+
T Consensus 198 aif~~~d 204 (231)
T 3ctl_A 198 GLFNHAE 204 (231)
T ss_dssp TTGGGCS
T ss_pred HHhCCCC
Confidence 9998533
No 44
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=83.49 E-value=4.6 Score=32.22 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=44.4
Q ss_pred CeeEEEEEeeCCCC--CCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcCCCEEecCccccCCCc
Q 029062 118 NLEFSGLMTIGMPD--YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 118 ~L~l~GLmt~~~~~--~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+..+.++|+..+.. ........++++++++...+. |++. ...+-.|.+.+ .....+.|++.+=+||+||+..+
T Consensus 134 ~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~-~~~~-~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a~d 209 (230)
T 1tqj_A 134 VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDER-GLDP-WIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPN 209 (230)
T ss_dssp GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHH-TCCC-EEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSC
T ss_pred cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhc-CCCC-cEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCC
Confidence 45688899987752 112234456666666655543 5542 12345565554 33445789999999999998544
No 45
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=83.35 E-value=1.3 Score=35.94 Aligned_cols=72 Identities=8% Similarity=0.107 Sum_probs=46.9
Q ss_pred CCeeEEEEEeeCCCCC--CChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCH-HHHHH--cCCCEEecCccccCC
Q 029062 117 PNLEFSGLMTIGMPDY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF-EQAIE--MGSTSVRIGSTIFGP 190 (199)
Q Consensus 117 ~~L~l~GLmt~~~~~~--~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~-~~a~~--~g~t~VR~Gs~ifgd 190 (199)
+.+.+..+||..|.-. .......++++++++.+.+. |+.. ...+-.|.+.+- ....+ .|++.+=+||+||+.
T Consensus 147 ~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~-~~~~-~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 147 DQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNR-RVEK-LINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp TTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGG-GGGC-EEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred hcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhc-CCCc-eEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 4577888998776522 23455677777777666443 4332 123455665543 34568 999999999999986
No 46
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=74.15 E-value=14 Score=31.40 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=63.4
Q ss_pred HHHHHHHHH-HHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCC--hHHHHHHH
Q 029062 66 KIANHLDKA-VSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--TPENFRTL 142 (199)
Q Consensus 66 ~~a~~l~~~-a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~--~~~~f~~l 142 (199)
+.+.++-++ .+..|. ..+|.++++..+ ....|.+.++..++++.+. +. +.+.-+ +++...... ....+ .
T Consensus 194 rf~~eiv~aVr~avg~-d~pv~vRls~~~-~~~~g~~~~~~~~~a~~l~-~~--vd~i~v-s~g~~~~~~~~~~~~~--~ 265 (343)
T 3kru_A 194 RFLIEVIDEVRKNWPE-NKPIFVRVSADD-YMEGGINIDMMVEYINMIK-DK--VDLIDV-SSGGLLNVDINLYPGY--Q 265 (343)
T ss_dssp HHHHHHHHHHHHTSCT-TSCEEEEEECCC-SSTTSCCHHHHHHHHHHHT-TT--CSEEEE-ECCCSSCCCCCCCTTT--T
T ss_pred HHHHHHHHHHHhcCCc-cCCeEEEeechh-hhccCccHHHHHHHHHHhh-cc--ccEEec-cCCceEeeeecccCce--e
Confidence 343333333 334564 678999999753 4456888899999999887 54 333222 122211100 00000 1
Q ss_pred HHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCc
Q 029062 143 LNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 143 ~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
.++...+++..++ +.+..|.-.+.+ .+++.| ++.|-+|..++.+-.
T Consensus 266 ~~~~~~ir~~~~i----PVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPd 315 (343)
T 3kru_A 266 VKYAETIKKRCNI----KTSAVGLITTQELAEEILSNERADLVALGRELLRNPY 315 (343)
T ss_dssp HHHHHHHHHHHTC----EEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred ehHHHHHHHhcCc----ccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCe
Confidence 2233445554443 345555544444 346777 899999999887654
No 47
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=73.19 E-value=25 Score=29.65 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHH
Q 029062 70 HLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCR 146 (199)
Q Consensus 70 ~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~ 146 (199)
.+.+..+..|. ..+|.++++... ....|.++++..++++.+. +. ++.+.-+.. +..... .....+ ..++.
T Consensus 208 iv~aVR~avG~-d~pV~vRls~~~-~~~~g~~~~~~~~la~~L~-~~-Gvd~i~vs~-g~~~~~~~~~~~~~~--~~~~~ 280 (349)
T 3hgj_A 208 VAQAVREVVPR-ELPLFVRVSATD-WGEGGWSLEDTLAFARRLK-EL-GVDLLDCSS-GGVVLRVRIPLAPGF--QVPFA 280 (349)
T ss_dssp HHHHHHHHSCT-TSCEEEEEESCC-CSTTSCCHHHHHHHHHHHH-HT-TCCEEEEEC-CCSCSSSCCCCCTTT--THHHH
T ss_pred HHHHHHHHhcC-CceEEEEecccc-ccCCCCCHHHHHHHHHHHH-Hc-CCCEEEEec-CCcCcccccCCCccc--cHHHH
Confidence 33444445565 678999999764 3456888899999999987 65 344433321 111100 000000 12233
Q ss_pred HHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCc
Q 029062 147 AEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 147 ~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
..+++..++ +.+..|.-.|.+ .+++.| ++.|-+|+.++.+-+
T Consensus 281 ~~ir~~~~i----PVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPd 326 (349)
T 3hgj_A 281 DAVRKRVGL----RTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPY 326 (349)
T ss_dssp HHHHHHHCC----EEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTT
T ss_pred HHHHHHcCc----eEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCch
Confidence 445554343 345556544444 346788 899999999987643
No 48
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=71.41 E-value=2 Score=34.52 Aligned_cols=99 Identities=9% Similarity=0.087 Sum_probs=56.1
Q ss_pred HHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-CC-CChHHHHHHHHHHHHHHHH
Q 029062 74 AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY-TSTPENFRTLLNCRAEVCK 151 (199)
Q Consensus 74 ~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~~-~~~~~~f~~l~~~~~~l~~ 151 (199)
..++.|. .+-+-+|.+ -+.+. ++.+. ....+.+.-+||..+. +. ........+++++++.+.
T Consensus 109 ~i~~~G~---k~gvalnp~-------tp~~~----~~~~l-~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~- 172 (227)
T 1tqx_A 109 EIRDNNL---WCGISIKPK-------TDVQK----LVPIL-DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK- 172 (227)
T ss_dssp HHHTTTC---EEEEEECTT-------SCGGG----GHHHH-TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-
T ss_pred HHHHcCC---eEEEEeCCC-------CcHHH----HHHHh-hcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-
Confidence 6667775 344455654 12222 33444 3224667778987664 22 122344555555444331
Q ss_pred HhCCCCCCCEEEecCCcCHH-HHHHcCCCEEecCccccCCCcc
Q 029062 152 ALGMAEDQCELSMGMSGDFE-QAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 152 ~~g~~~~~~~lS~Gms~d~~-~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
++. ..+..|.+.+-- ...+.|++.+=+||+||+..++
T Consensus 173 --~~~---I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~ 210 (227)
T 1tqx_A 173 --NLN---IQVDGGLNIETTEISASHGANIIVAGTSIFNAEDP 210 (227)
T ss_dssp --TCE---EEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSH
T ss_pred --CCe---EEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 221 345778766533 4568999999999999986443
No 49
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=60.92 E-value=64 Score=27.04 Aligned_cols=100 Identities=7% Similarity=0.095 Sum_probs=58.2
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-CCCC--hHHHHHHHHHHHHHHHHHhCCCCC
Q 029062 82 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS--TPENFRTLLNCRAEVCKALGMAED 158 (199)
Q Consensus 82 ~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~~~~--~~~~f~~l~~~~~~l~~~~g~~~~ 158 (199)
..+|.++++... ....|.+.++..++++.+. +. ++.+ |..+.+. .... ....+ ..++...+++..++
T Consensus 209 ~~pv~vRls~~~-~~~~g~~~~~~~~la~~L~-~~-Gvd~--i~vs~g~~~~~~~~~~~~~--~~~~~~~ik~~~~i--- 278 (340)
T 3gr7_A 209 DGPLFVRISASD-YHPDGLTAKDYVPYAKRMK-EQ-GVDL--VDVSSGAIVPARMNVYPGY--QVPFAELIRREADI--- 278 (340)
T ss_dssp CSCEEEEEESCC-CSTTSCCGGGHHHHHHHHH-HT-TCCE--EEEECCCSSCCCCCCCTTT--THHHHHHHHHHTTC---
T ss_pred CCceEEEecccc-ccCCCCCHHHHHHHHHHHH-Hc-CCCE--EEEecCCccCCCCCCCccc--cHHHHHHHHHHcCC---
Confidence 357889998763 4456888899999999997 65 3433 3333221 1000 00000 12334455555443
Q ss_pred CCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCc
Q 029062 159 QCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 159 ~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
+.+..|.-.|.+ .+++.| ++.|-+|+.++.+-.
T Consensus 279 -PVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPd 315 (340)
T 3gr7_A 279 -PTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPY 315 (340)
T ss_dssp -CEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTT
T ss_pred -cEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCch
Confidence 445555544444 346788 899999999987643
No 50
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=59.33 E-value=18 Score=28.31 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=40.1
Q ss_pred CeeEEEEEeeCCC-CCCC-hHHHHHHHHHHHHHHHHHh-CCCCCCCEEEecCCcCHH-HHHHcCCCEEecCccccCCCc
Q 029062 118 NLEFSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKAL-GMAEDQCELSMGMSGDFE-QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 118 ~L~l~GLmt~~~~-~~~~-~~~~f~~l~~~~~~l~~~~-g~~~~~~~lS~Gms~d~~-~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+..+.++|+..+. +... ....++.+.+ +++.. +++ ..+..|.+++-- .+++.|++.+=+||+||+..+
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~----~~~~~~~~p---i~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~~d 209 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRA----LRKKYPSLD---IEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAE 209 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHH----HHHHCTTSE---EEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHH----HHHhcCCCC---EEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCC
Confidence 3568888987654 2111 1222333333 33322 221 355888876643 446779999999999998544
No 51
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=57.73 E-value=30 Score=29.35 Aligned_cols=116 Identities=10% Similarity=0.034 Sum_probs=62.5
Q ss_pred HHHHHHHHHH-HhcCCCCceEEEEEeCCCCCCccC-CChhhHHHHHHHHHhcCCCeeEEEEEe---eCCCCCCChHHHHH
Q 029062 66 KIANHLDKAV-SNLGRKPLKVLVQVNTSGEESKSG-IDPSSCLGIVEHVRLRCPNLEFSGLMT---IGMPDYTSTPENFR 140 (199)
Q Consensus 66 ~~a~~l~~~a-~~~g~~~i~VllqIntg~e~~R~G-v~~~~~~~l~~~i~~~~~~L~l~GLmt---~~~~~~~~~~~~f~ 140 (199)
+.+.++-++. +..|. ..+|.++++... ....| .+.++..++++.+. +. ++.+.-+.. ............
T Consensus 209 r~~~eiv~aVr~avg~-d~pV~vRis~~~-~~~~G~~~~~~~~~la~~L~-~~-Gvd~i~vs~g~~~~~~~~~~~~~~-- 282 (363)
T 3l5l_A 209 RFLLETLAAVREVWPE-NLPLTARFGVLE-YDGRDEQTLEESIELARRFK-AG-GLDLLSVSVGFTIPDTNIPWGPAF-- 282 (363)
T ss_dssp HHHHHHHHHHHTTSCT-TSCEEEEEEEEC-SSSCHHHHHHHHHHHHHHHH-HT-TCCEEEEEECCCSSCCCCCCCTTT--
T ss_pred HHHHHHHHHHHHHcCC-CceEEEEecchh-cCCCCCCCHHHHHHHHHHHH-Hc-CCCEEEEecCccccccccCCCcch--
Confidence 3444333333 34454 567999998652 34446 67788899999887 65 344333321 111000000000
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCc
Q 029062 141 TLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 141 ~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
..++.+.+++..++ +.+..|.-.|.+ .+++.| ++.|-+|+.++.+-+
T Consensus 283 -~~~~~~~ir~~~~i----PVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPd 333 (363)
T 3l5l_A 283 -MGPIAERVRREAKL----PVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPH 333 (363)
T ss_dssp -THHHHHHHHHHHTC----CEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTT
T ss_pred -hHHHHHHHHHHcCC----cEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCch
Confidence 12233445554443 445556544444 336788 899999999987643
No 52
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=57.30 E-value=46 Score=29.09 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=52.1
Q ss_pred Cce-EEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-C-CC-------C----hHHHHHHHHHHHH
Q 029062 82 PLK-VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-D-YT-------S----TPENFRTLLNCRA 147 (199)
Q Consensus 82 ~i~-VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~-~~-------~----~~~~f~~l~~~~~ 147 (199)
..+ |+++|-.+ ++.+++.++++.+. +.. +.||-.+... . .+ . -...+..-.+++.
T Consensus 268 ~~P~V~VKi~pd-------~~~~~i~~iA~~a~-~aG---aDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~ 336 (415)
T 3i65_A 268 KKPLVFVKLAPD-------LNQEQKKEIADVLL-ETN---IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFIC 336 (415)
T ss_dssp SCCEEEEEECSC-------CCHHHHHHHHHHHH-HHT---CSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHH
T ss_pred CCCeEEEEecCC-------CCHHHHHHHHHHHH-HcC---CcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHH
Confidence 456 89988654 45567888888776 432 3344333211 0 00 0 0111112223334
Q ss_pred HHHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCccccCC
Q 029062 148 EVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 148 ~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~ifgd 190 (199)
.+++..+-. ++.+..|+=.+.+ .++..|++.|.+|++++.+
T Consensus 337 ~v~~~v~~~--iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~ 380 (415)
T 3i65_A 337 EMYNYTNKQ--IPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN 380 (415)
T ss_dssp HHHHHTTTC--SCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHH
T ss_pred HHHHHhCCC--CCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc
Confidence 444432212 4566666556655 3467899999999998755
No 53
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=55.18 E-value=60 Score=27.05 Aligned_cols=100 Identities=13% Similarity=0.214 Sum_probs=56.8
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-CCC--ChHHHHHHHHHHHHHHHHHhCCCCC
Q 029062 82 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYT--STPENFRTLLNCRAEVCKALGMAED 158 (199)
Q Consensus 82 ~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~~~--~~~~~f~~l~~~~~~l~~~~g~~~~ 158 (199)
..+|.++++..+ ....|+++++..++++.+. +. ++.+ |..+.+. ... .....+ ..++...+++..++
T Consensus 209 ~~pv~vris~~~-~~~~g~~~~~~~~~a~~l~-~~-Gvd~--i~v~~~~~~~~~~~~~~~~--~~~~~~~ir~~~~i--- 278 (338)
T 1z41_A 209 DGPLFVRVSASD-YTDKGLDIADHIGFAKWMK-EQ-GVDL--IDCSSGALVHADINVFPGY--QVSFAEKIREQADM--- 278 (338)
T ss_dssp CSCEEEEEECCC-CSTTSCCHHHHHHHHHHHH-HT-TCCE--EEEECCCSSCCCCCCCTTT--THHHHHHHHHHHCC---
T ss_pred CCcEEEEecCcc-cCCCCCCHHHHHHHHHHHH-Hc-CCCE--EEEecCccccCCCCCCccc--hHHHHHHHHHHCCC---
Confidence 357999998763 3345888889999999887 54 3433 3223221 000 000000 12233444544343
Q ss_pred CCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCc
Q 029062 159 QCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 159 ~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
+.+..|.-.|.+ .+++.| ++.|-+|+.++.+..
T Consensus 279 -PVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPd 315 (338)
T 1z41_A 279 -ATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPF 315 (338)
T ss_dssp -EEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTT
T ss_pred -CEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCch
Confidence 345555444444 346788 899999999988743
No 54
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=54.18 E-value=36 Score=26.94 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=25.6
Q ss_pred CEEEecCCcCH-HHHHHcCCCEEecCccccCCCcc
Q 029062 160 CELSMGMSGDF-EQAIEMGSTSVRIGSTIFGPREY 193 (199)
Q Consensus 160 ~~lS~Gms~d~-~~a~~~g~t~VR~Gs~ifgd~~~ 193 (199)
..+-.|.+++- ..+.+.|++.+=+||+||+..++
T Consensus 172 I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp 206 (228)
T 3ovp_A 172 IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDP 206 (228)
T ss_dssp EEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCH
T ss_pred EEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 35677776653 35578999999999999986543
No 55
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=52.02 E-value=98 Score=25.94 Aligned_cols=58 Identities=9% Similarity=0.127 Sum_probs=38.5
Q ss_pred cCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC-eeEEEEEeeCCCCCCChHHHHHHHHHHHHHH
Q 029062 78 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN-LEFSGLMTIGMPDYTSTPENFRTLLNCRAEV 149 (199)
Q Consensus 78 ~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~-L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l 149 (199)
+|. .++|+|..|+| .+++.+++-.+. .|. +++.||-|.++... ..+..+-...+.+.+
T Consensus 10 ~~~-~~~vilD~DpG---------iDDa~AL~~al~--~p~~iel~gITtv~GN~~--~~~~~~Nal~lL~~~ 68 (338)
T 3epw_A 10 HGS-AKNVVLDHDGN---------LDDFVAMVLLAS--NTEKVRLIGALCTDADCF--VENGFNVTGKIMCLM 68 (338)
T ss_dssp ----CEEEEEEECCS---------HHHHHHHHHHHH--CTTTEEEEEEEECSSSSC--HHHHHHHHHHHHHHH
T ss_pred cCc-cceEEEECCCC---------hHHHHHHHHHHh--CCCCeEEEEEEEeCCCCh--HHHHHHHHHHHHHHh
Confidence 455 78999999986 468888877665 788 99999998887532 233333344444444
No 56
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=49.27 E-value=91 Score=24.22 Aligned_cols=134 Identities=12% Similarity=0.102 Sum_probs=64.7
Q ss_pred Cceeeeecccch-------HHHHhHhccCCCccEEEecC-cHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChh
Q 029062 32 DIKWHFVGHLQS-------NKAKTLLGGVPNLDMVEGVG-NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS 103 (199)
Q Consensus 32 ~i~~h~IG~lq~-------~ki~~l~~~~~~~~~i~sVD-s~~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~ 103 (199)
+++.|+++.... +.++.+.+ ..++.++.-+ ..+....+.+.+++.|. ++.+-++.. ++.
T Consensus 80 ~~pv~~~~~~~~~~~~~~~~~~~~~~~--~Gad~v~~~~~~~~~~~~~~~~~~~~g~---~~~~~i~~~--------t~~ 146 (248)
T 1geq_A 80 STPIVLMTYYNPIYRAGVRNFLAEAKA--SGVDGILVVDLPVFHAKEFTEIAREEGI---KTVFLAAPN--------TPD 146 (248)
T ss_dssp CCCEEEEECHHHHHHHCHHHHHHHHHH--HTCCEEEETTCCGGGHHHHHHHHHHHTC---EEEEEECTT--------CCH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHH--CCCCEEEECCCChhhHHHHHHHHHHhCC---CeEEEECCC--------CHH
Confidence 356777764332 44554443 2245444322 23445667777777775 344434321 232
Q ss_pred hHHHHHHHHHhcCCCeeEEEEEeeCCCCCC---ChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc-CHH-HHHHcCC
Q 029062 104 SCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG-DFE-QAIEMGS 178 (199)
Q Consensus 104 ~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~---~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~-d~~-~a~~~g~ 178 (199)
+ .++.+....++ +..+++..+.+.. .....++.+.+ +++..+++ ..++.|.+. +-- ...+.|+
T Consensus 147 e---~~~~~~~~~d~--~i~~~~~~G~~g~~~~~~~~~~~~i~~----l~~~~~~p---i~~~GGI~~~e~i~~~~~~Ga 214 (248)
T 1geq_A 147 E---RLKVIDDMTTG--FVYLVSLYGTTGAREEIPKTAYDLLRR----AKRICRNK---VAVGFGVSKREHVVSLLKEGA 214 (248)
T ss_dssp H---HHHHHHHHCSS--EEEEECCC-------CCCHHHHHHHHH----HHHHCSSC---EEEESCCCSHHHHHHHHHTTC
T ss_pred H---HHHHHHhcCCC--eEEEEECCccCCCCCCCChhHHHHHHH----HHhhcCCC---EEEEeecCCHHHHHHHHHcCC
Confidence 2 23333213333 4445655432211 11223333333 44432332 345777765 322 3347899
Q ss_pred CEEecCccccCC
Q 029062 179 TSVRIGSTIFGP 190 (199)
Q Consensus 179 t~VR~Gs~ifgd 190 (199)
+-|=+||++|..
T Consensus 215 d~vivGsai~~~ 226 (248)
T 1geq_A 215 NGVVVGSALVKI 226 (248)
T ss_dssp SEEEECHHHHHH
T ss_pred CEEEEcHHHHhh
Confidence 999999999964
No 57
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=48.79 E-value=98 Score=24.46 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=66.3
Q ss_pred HHHHhHhccCCCccEE---EecCcH------HHHHHHHHHHHhcCCCCceEEEEEeC-CCCCCccCCChhhHHHHHHHHH
Q 029062 44 NKAKTLLGGVPNLDMV---EGVGNE------KIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSSCLGIVEHVR 113 (199)
Q Consensus 44 ~ki~~l~~~~~~~~~i---~sVDs~------~~a~~l~~~a~~~g~~~i~VllqInt-g~e~~R~Gv~~~~~~~l~~~i~ 113 (199)
..++.+++ ..++.+ ....+. +.+..+.+.|.+.|. + +++++.. |.+. +.|.++++..++++...
T Consensus 103 ~~v~~a~~--~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~-~--viv~~~~~G~~l-~~~~~~~~~~~~a~~a~ 176 (273)
T 2qjg_A 103 TTVEEAIR--MGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGM-P--LIAMMYPRGKHI-QNERDPELVAHAARLGA 176 (273)
T ss_dssp SCHHHHHH--TTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTC-C--EEEEEEECSTTC-SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCC-C--EEEEeCCCCccc-CCCCCHhHHHHHHHHHH
Confidence 44555554 235555 333332 356677777777775 4 5665532 2222 35667766666656554
Q ss_pred hcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCc-C-------HHHHHHcCCCEEecCc
Q 029062 114 LRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG-D-------FEQAIEMGSTSVRIGS 185 (199)
Q Consensus 114 ~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~-d-------~~~a~~~g~t~VR~Gs 185 (199)
+. +..+.++- ++. .++.+.+ +.+..+++ ...+.|.+. + ...+.+.|++-|-+|+
T Consensus 177 -~~-Gad~i~~~--~~~-------~~~~l~~----i~~~~~ip---vva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~ 238 (273)
T 2qjg_A 177 -EL-GADIVKTS--YTG-------DIDSFRD----VVKGCPAP---VVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGR 238 (273)
T ss_dssp -HT-TCSEEEEC--CCS-------SHHHHHH----HHHHCSSC---EEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCH
T ss_pred -Hc-CCCEEEEC--CCC-------CHHHHHH----HHHhCCCC---EEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeH
Confidence 43 45555543 221 1222322 33322332 234666653 4 4344578999999999
Q ss_pred cccCCC
Q 029062 186 TIFGPR 191 (199)
Q Consensus 186 ~ifgd~ 191 (199)
.|+...
T Consensus 239 ~i~~~~ 244 (273)
T 2qjg_A 239 NIFQHD 244 (273)
T ss_dssp HHHTSS
T ss_pred HhhCCC
Confidence 999854
No 58
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=48.70 E-value=36 Score=27.13 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=42.9
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccEEE-ecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~i~-sVDs~~~a~~l~~~a~~~g~ 80 (199)
+.+|++.+.++. .+...+.+..+ ..+....+..++ +.+++++ +.|+.+.-..+++.|.+.++
T Consensus 80 G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~---~~~DvVi~~~d~~~~r~~l~~~~~~~~~ 144 (251)
T 1zud_1 80 DRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV---ARADVVLDCTDNMATRQEINAACVALNT 144 (251)
T ss_dssp TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH---HHCSEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH---hcCCEEEECCCCHHHHHHHHHHHHHhCC
Confidence 568888888877 55444555544 233334555666 3467766 78999999999999998875
No 59
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=46.60 E-value=1.2e+02 Score=24.94 Aligned_cols=110 Identities=11% Similarity=0.226 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccC--CCh-hhHHHHHHHHHhcCCCeeEEEEEe-eCCCCCCChHHHHHH
Q 029062 66 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSG--IDP-SSCLGIVEHVRLRCPNLEFSGLMT-IGMPDYTSTPENFRT 141 (199)
Q Consensus 66 ~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~G--v~~-~~~~~l~~~i~~~~~~L~l~GLmt-~~~~~~~~~~~~f~~ 141 (199)
+.+.++.+.|.+.|. ++++++-..+. ..| -+| +.+...++... . -+..+.++-. ..+.. ..+.+
T Consensus 142 ~~i~~v~~~~~~~G~---p~lv~~~~~g~--~v~~~~~~~~~v~~aa~~a~-~-lGaD~iKv~~~~~~~g---~~~~~-- 209 (304)
T 1to3_A 142 NMVKEFNELCHSNGL---LSIIEPVVRPP--RCGDKFDREQAIIDAAKELG-D-SGADLYKVEMPLYGKG---ARSDL-- 209 (304)
T ss_dssp HHHHHHHHHHHTTTC---EEEEEEEECCC--SSCSCCCHHHHHHHHHHHHT-T-SSCSEEEECCGGGGCS---CHHHH--
T ss_pred HHHHHHHHHHHHcCC---cEEEEEECCCC--ccccCCChhHHHHHHHHHHH-H-cCCCEEEeCCCcCCCC---CHHHH--
Confidence 667777777878875 67777754321 111 133 33344344444 3 3566655532 22111 12233
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEecCCcC-----HHHHHHcCCCEEecCccccCC
Q 029062 142 LLNCRAEVCKALGMAEDQCELSMGMSGD-----FEQAIEMGSTSVRIGSTIFGP 190 (199)
Q Consensus 142 l~~~~~~l~~~~g~~~~~~~lS~Gms~d-----~~~a~~~g~t~VR~Gs~ifgd 190 (199)
.++++......+.+ +..+|.|.+.+ ...+.+.|..-|=+|+.||..
T Consensus 210 -~~vv~~~~~~~~~P--~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 210 -LTASQRLNGHINMP--WVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp -HHHHHHHHHTCCSC--EEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred -HHHHHhccccCCCC--eEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence 33333322211221 13447777543 446678899999999999986
No 60
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=42.86 E-value=1.4e+02 Score=24.51 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=50.4
Q ss_pred CCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC---C--------CC----ChHHHHHHHH
Q 029062 79 GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---D--------YT----STPENFRTLL 143 (199)
Q Consensus 79 g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~---~--------~~----~~~~~f~~l~ 143 (199)
|. .++|.+++..+ ++.+++.++++.+. +.. +.||-.+... . .. .-........
T Consensus 209 g~-~~Pv~vKi~~~-------~~~~~~~~~a~~l~-~~G---vd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~ 276 (336)
T 1f76_A 209 HK-YVPIAVKIAPD-------LSEEELIQVADSLV-RHN---IDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST 276 (336)
T ss_dssp TS-CCCEEEECCSC-------CCHHHHHHHHHHHH-HTT---CSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHH
T ss_pred cc-cCceEEEecCC-------CCHHHHHHHHHHHH-HcC---CcEEEEeCCcccccccccccccccCCCcCCchhHHHHH
Confidence 44 57899987543 56678888888886 543 3333322210 0 00 0000011112
Q ss_pred HHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCccccC
Q 029062 144 NCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFG 189 (199)
Q Consensus 144 ~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~ifg 189 (199)
++...+++..+-. ++.+..|+=.|.+ .++..|++.|.+|+.+..
T Consensus 277 ~~i~~i~~~~~~~--ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 277 EIIRRLSLELNGR--LPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp HHHHHHHHHHTTS--SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHhCCC--CCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 3334444433211 3455445445555 336789999999998654
No 61
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=40.66 E-value=1.7e+02 Score=24.82 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=50.8
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-C------C----C-C---hHHHHHHHHHHH
Q 029062 82 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-D------Y----T-S---TPENFRTLLNCR 146 (199)
Q Consensus 82 ~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~------~----~-~---~~~~f~~l~~~~ 146 (199)
.++|++++-.+ ++.+++.++++.+. +.. +.||-.|... + . . . -...+..-.+.+
T Consensus 220 ~~Pv~vKi~p~-------~~~~~~~~ia~~~~-~aG---adgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v 288 (367)
T 3zwt_A 220 RPAVLVKIAPD-------LTSQDKEDIASVVK-ELG---IDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTI 288 (367)
T ss_dssp CCEEEEEECSC-------CCHHHHHHHHHHHH-HHT---CCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHH
T ss_pred CceEEEEeCCC-------CCHHHHHHHHHHHH-HcC---CCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHH
Confidence 57899998543 56677888888776 432 3333322211 0 0 0 0 011111123344
Q ss_pred HHHHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCcccc
Q 029062 147 AEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIF 188 (199)
Q Consensus 147 ~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~if 188 (199)
..+++..+-. ++.+..|+=.+.+ .++..|++.|.+|+.++
T Consensus 289 ~~i~~~v~~~--ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l 331 (367)
T 3zwt_A 289 REMYALTQGR--VPIIGVGGVSSGQDALEKIRAGASLVQLYTALT 331 (367)
T ss_dssp HHHHHHTTTC--SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHcCCC--ceEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 4455543212 4556555555655 33578999999999984
No 62
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=39.03 E-value=68 Score=26.91 Aligned_cols=61 Identities=8% Similarity=0.109 Sum_probs=42.5
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~ 80 (199)
|.+|++.+.++. .+...+.+..+ +.+.. ....+. ..+++ +.+.|+.+....|++.|.+.++
T Consensus 88 G~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~---~~~dvVv~~~d~~~~r~~ln~~~~~~~i 151 (346)
T 1y8q_A 88 GRNRAEASLERAQNLNPMVDVKVDTEDIEK-KPESFF---TQFDAVCLTCCSRDVIVKVDQICHKNSI 151 (346)
T ss_dssp TSBHHHHHHHHHHHTCTTSEEEEECSCGGG-CCHHHH---TTCSEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHhHCCCeEEEEEecccCc-chHHHh---cCCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 678999988888 77555655554 33322 233455 34664 5678999999999999998875
No 63
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=37.54 E-value=1.2e+02 Score=24.50 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCccccC
Q 029062 144 NCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFG 189 (199)
Q Consensus 144 ~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~ifg 189 (199)
+....+++..+ ..++.+..|.=.+.+ .++..|++.|.+|+.++.
T Consensus 230 ~~i~~v~~~~~--~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 230 ANVRAFYTRLK--PEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp HHHHHHHTTSC--TTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHhcC--CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 44455554321 113455444444544 335789999999999884
No 64
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=32.42 E-value=1.6e+02 Score=26.78 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=64.1
Q ss_pred HHHHHHH-HHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-----CCCC-hHHHH
Q 029062 67 IANHLDK-AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-----DYTS-TPENF 139 (199)
Q Consensus 67 ~a~~l~~-~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-----~~~~-~~~~f 139 (199)
.+.++-+ ..+..|. ..+|.++++... ..+.|++.++..++++.+. + ++.+..+ +.+. .... ....+
T Consensus 209 ~~~ei~~avr~~~g~-~~~v~~r~s~~~-~~~~g~~~~~~~~~~~~l~-~--~~d~~~v--~~~~~~~~~~~~~~~~~~~ 281 (690)
T 3k30_A 209 LLRELLEDTLDECAG-RAAVACRITVEE-EIDGGITREDIEGVLRELG-E--LPDLWDF--AMGSWEGDSVTSRFAPEGR 281 (690)
T ss_dssp HHHHHHHHHHHHHTT-SSEEEEEEECCC-CSTTSCCHHHHHHHHHHHT-T--SSSEEEE--ECSCHHHHTCCTTTCCTTT
T ss_pred HHHHHHHHHHHHhCC-CceEEEEECccc-cCCCCCCHHHHHHHHHHHH-h--hcCEEEE--ecccccccCCCCccCCccc
Confidence 4433333 3334565 678999998764 4578999989999999887 5 3333222 2211 0000 00000
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCcc
Q 029062 140 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREY 193 (199)
Q Consensus 140 ~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~ 193 (199)
...+.+.+++..+ ++.+..|.-.+.+ .+++.| ++.|-+|...+.|-..
T Consensus 282 --~~~~~~~i~~~~~----~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~ 333 (690)
T 3k30_A 282 --QEEFVAGLKKLTT----KPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFL 333 (690)
T ss_dssp --THHHHTTSGGGCS----SCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTH
T ss_pred --cHHHHHHHHHHcC----CeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccH
Confidence 1223344454433 3456556545544 336777 7999999999987543
No 65
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=31.35 E-value=31 Score=29.91 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=44.3
Q ss_pred CceEEEEEeCCCCCCccCCCh--h--hHHHHHHHHHhcCCCeeEEEEEe-eCCCCCCChHHHHHHHHHHHHHHHHHhCCC
Q 029062 82 PLKVLVQVNTSGEESKSGIDP--S--SCLGIVEHVRLRCPNLEFSGLMT-IGMPDYTSTPENFRTLLNCRAEVCKALGMA 156 (199)
Q Consensus 82 ~i~VllqIntg~e~~R~Gv~~--~--~~~~l~~~i~~~~~~L~l~GLmt-~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~ 156 (199)
+-+...|+|-- |.+.|++. + ...+..++|. .....-+..++| +.... +......+.|.++.+..++ +|+.
T Consensus 15 ~~~~~~~~~~~--M~~LGiSvYp~~~~~~~~~~Yi~-~a~~~Gf~~IFTSL~~~e-~~~~~~~~~~~~l~~~a~~-~g~~ 89 (385)
T 1x7f_A 15 TENLYFQSNAM--ERKLGISLYPEHSTKEKDMAYIS-AAARHGFSRIFTCLLSVN-RPKEEIVAEFKEIINHAKD-NNME 89 (385)
T ss_dssp ----------C--CCEEEEEECGGGSCHHHHHHHHH-HHHTTTEEEEEEEECCC---------HHHHHHHHHHHH-TTCE
T ss_pred cCChhhhHHHH--HHheEEEEcCCCCCHHHHHHHHH-HHHHCCCCEEEccCCccC-CChHHHHHHHHHHHHHHHH-CCCE
Confidence 34677888876 88899963 3 2444445565 444455888866 32222 2223345566666666665 3754
Q ss_pred CCC----CEE-EecCC-cCHHHHHHcCCCEEecCc
Q 029062 157 EDQ----CEL-SMGMS-GDFEQAIEMGSTSVRIGS 185 (199)
Q Consensus 157 ~~~----~~l-S~Gms-~d~~~a~~~g~t~VR~Gs 185 (199)
..+ ..+ -.|.| .|...-.+.|+|-+|+--
T Consensus 90 vi~DVsp~~~~~Lg~s~~dl~~f~~lGi~gLRLD~ 124 (385)
T 1x7f_A 90 VILDVAPAVFDQLGISYSDLSFFAELGADGIRLDV 124 (385)
T ss_dssp EEEEECTTCC------CCCTHHHHHHTCSEEEESS
T ss_pred EEEECCHHHHHHcCCCHHHHHHHHHcCCCEEEEcC
Confidence 200 111 34666 344444577999999853
No 66
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=30.68 E-value=72 Score=29.45 Aligned_cols=111 Identities=9% Similarity=-0.011 Sum_probs=59.2
Q ss_pred HHhcCCCCceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHhcC-CCeeEEEEEe--e-CCCCCCC-hHHHHHHHHHHHHH
Q 029062 75 VSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRC-PNLEFSGLMT--I-GMPDYTS-TPENFRTLLNCRAE 148 (199)
Q Consensus 75 a~~~g~~~i~VllqIntg~e~~R~Gv~-~~~~~~l~~~i~~~~-~~L~l~GLmt--~-~~~~~~~-~~~~f~~l~~~~~~ 148 (199)
.+..|. ..+|.++++..+..+..|++ .++..++++.+. +. +-+.+.+... + ....... ....+ ...+...
T Consensus 210 r~~vg~-~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~-~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~ 285 (729)
T 1o94_A 210 KHAVGS-DCAIATRFGVDTVYGPGQIEAEVDGQKFVEMAD-SLVDMWDITIGDIAEWGEDAGPSRFYQQGH--TIPWVKL 285 (729)
T ss_dssp HHHHTT-TSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHG-GGCSEEEEEECCSTTGGGTSCCTTTCCTTT--THHHHHH
T ss_pred HHHhCC-CceEEEEEccccCcCCCCCCchHHHHHHHHHHH-hhcCEEEEeeecccccccccCCccccCccc--cHHHHHH
Confidence 334564 67899999865322345888 678888888887 52 2233333210 0 0000000 00000 1233445
Q ss_pred HHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCcc
Q 029062 149 VCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREY 193 (199)
Q Consensus 149 l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~~ 193 (199)
+++..+ ++.+..|.-.|.+ .+++.| ++.|-.|..++.|-..
T Consensus 286 i~~~~~----~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~ 330 (729)
T 1o94_A 286 VKQVSK----KPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330 (729)
T ss_dssp HHTTCS----SCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTH
T ss_pred HHHHCC----CEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchH
Confidence 555433 3455555544544 346777 8999999999886543
No 67
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=30.53 E-value=2.1e+02 Score=22.91 Aligned_cols=110 Identities=11% Similarity=-0.027 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeC--------CCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHH
Q 029062 66 KIANHLDKAVSNLGRKPLKVLVQVNT--------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPE 137 (199)
Q Consensus 66 ~~a~~l~~~a~~~g~~~i~VllqInt--------g~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~ 137 (199)
..+..+.+.|.+.|. .+=+|+-... |.+.=..|.+++++...++...+..|+ ..|+.-|-|......+.
T Consensus 39 p~~~~~a~~A~~~G~-EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~--a~GvnNHmGS~~T~~~~ 115 (245)
T 2nly_A 39 EHSTKQAEIAQAAGL-EVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPY--AVGLNNHMGSKIVENEK 115 (245)
T ss_dssp TTHHHHHHHHHHTTC-EEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTT--CCEEEEEECTTGGGCHH
T ss_pred CCHHHHHHHHHHCCC-EEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCC--cEEEecccccchhcCHH
Confidence 455667777888887 5444443321 111123467787776666544338898 56998777653222233
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEecC---CcCHHHHHHcCCCEEecCcc
Q 029062 138 NFRTLLNCRAEVCKALGMAEDQCELSMGM---SGDFEQAIEMGSTSVRIGST 186 (199)
Q Consensus 138 ~f~~l~~~~~~l~~~~g~~~~~~~lS~Gm---s~d~~~a~~~g~t~VR~Gs~ 186 (199)
.+..+.+.|+++ |+- .+-.+. |--...|-+.|.--++--.+
T Consensus 116 ---~m~~vm~~l~~~-gL~----fvDS~Ts~~S~a~~~A~~~gvp~~~rdvF 159 (245)
T 2nly_A 116 ---IMRAILEVVKEK-NAF----IIDSGTSPHSLIPQLAEELEVPYATRSIF 159 (245)
T ss_dssp ---HHHHHHHHHHHT-TCE----EEECCCCSSCSHHHHHHHTTCCEEECCEE
T ss_pred ---HHHHHHHHHHHC-CCE----EEcCCCCcccHHHHHHHHcCCCeEEeeEE
Confidence 345556667665 763 342233 33356777888866665444
No 68
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=29.75 E-value=50 Score=26.99 Aligned_cols=118 Identities=18% Similarity=0.183 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEE-eeCCCCCCChHHHHHHHHH
Q 029062 66 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM-TIGMPDYTSTPENFRTLLN 144 (199)
Q Consensus 66 ~~a~~l~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLm-t~~~~~~~~~~~~f~~l~~ 144 (199)
+.+...-+.+++.|. .+.+-+-.-.|-+ .-+-.+++.+.++++.+. +.. .....|. |.+... ..+ +.+
T Consensus 121 ~~~~~~i~~a~~~G~-~v~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~G-a~~i~l~DT~G~~~----P~~---~~~ 189 (298)
T 2cw6_A 121 QRFDAILKAAQSANI-SVRGYVSCALGCP-YEGKISPAKVAEVTKKFY-SMG-CYEISLGDTIGVGT----PGI---MKD 189 (298)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEEETTTCBT-TTBSCCHHHHHHHHHHHH-HTT-CSEEEEEETTSCCC----HHH---HHH
T ss_pred HHHHHHHHHHHHCCC-eEEEEEEEEeeCC-cCCCCCHHHHHHHHHHHH-HcC-CCEEEecCCCCCcC----HHH---HHH
Confidence 345555666777775 4322221112211 111246788899998887 653 4444443 222222 112 223
Q ss_pred HHHHHHHHhC-CCCCC-CEEEecCC-cCHHHHHHcCCCEEecCccccCCCccc
Q 029062 145 CRAEVCKALG-MAEDQ-CELSMGMS-GDFEQAIEMGSTSVRIGSTIFGPREYA 194 (199)
Q Consensus 145 ~~~~l~~~~g-~~~~~-~~lS~Gms-~d~~~a~~~g~t~VR~Gs~ifgd~~~~ 194 (199)
+++.+++..+ ++..+ .|-..||. .....|++.|++.|-.-..=+|..||.
T Consensus 190 lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a 242 (298)
T 2cw6_A 190 MLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYA 242 (298)
T ss_dssp HHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTS
T ss_pred HHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEeecccccCCCCC
Confidence 3334444322 11000 12245552 223467899999887533334444443
No 69
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=28.77 E-value=1.1e+02 Score=23.31 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=23.3
Q ss_pred EEEecCCcCHH-HHHHcCCCEEecCccccCCC
Q 029062 161 ELSMGMSGDFE-QAIEMGSTSVRIGSTIFGPR 191 (199)
Q Consensus 161 ~lS~Gms~d~~-~a~~~g~t~VR~Gs~ifgd~ 191 (199)
....|.+++-- .+.+.|++-|-+||++|...
T Consensus 168 ia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~ 199 (221)
T 1yad_A 168 IAIGGMTPDRLRDVKQAGADGIAVMSGIFSSA 199 (221)
T ss_dssp EEESSCCGGGHHHHHHTTCSEEEESHHHHTSS
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEhHHhhCCC
Confidence 44677765533 45688999999999999853
No 70
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=28.33 E-value=86 Score=27.20 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=55.6
Q ss_pred CCCCceEEEEEeCCCCCCcc--CCChhhHHHHHHHHHhc-C--CCeeEEEEEe----eCC-CCCCChHHHHHHHHHHHHH
Q 029062 79 GRKPLKVLVQVNTSGEESKS--GIDPSSCLGIVEHVRLR-C--PNLEFSGLMT----IGM-PDYTSTPENFRTLLNCRAE 148 (199)
Q Consensus 79 g~~~i~VllqIntg~e~~R~--Gv~~~~~~~l~~~i~~~-~--~~L~l~GLmt----~~~-~~~~~~~~~f~~l~~~~~~ 148 (199)
+. ..+|.++++... .... |+..++..++++.+. + . +-|.+.+-.. +.. ....... ..+.+.
T Consensus 240 ~~-~f~v~vRis~~~-~~~~~~G~~~ed~~~la~~L~-~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~------~~~a~~ 310 (419)
T 3l5a_A 240 PD-NFILGFRATPEE-TRGSDLGYTIDEFNQLIDWVM-DVSNIQYLAIASWGRHIYQNTSRTPGDHFG------RPVNQI 310 (419)
T ss_dssp CT-TCEEEEEECSCE-EETTEEEECHHHHHHHHHHHH-HHSCCCCEEECCTTCCGGGCBCCCSSTTTT------SBHHHH
T ss_pred CC-CeeEEEeccccc-ccCCCCCCCHHHHHHHHHHHH-hhcCCcEEEEeeCCccccccccCCCCcccc------HHHHHH
Confidence 54 678999998652 2222 888899999999997 6 3 3444433100 000 0000000 112233
Q ss_pred HHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCccccCCCc
Q 029062 149 VCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 149 l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
+++..+-. ++.+..|.-.|.+ .+++. ++.|-+|+.++.+-.
T Consensus 311 Ik~~v~~~--iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~IanPd 354 (419)
T 3l5a_A 311 VYEHLAGR--IPLIASGGINSPESALDALQH-ADMVGMSSPFVTEPD 354 (419)
T ss_dssp HHHHHTTS--SCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHHCTT
T ss_pred HHHHcCCC--CeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHHCcH
Confidence 34433211 2455556545544 33567 999999999887643
No 71
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=28.31 E-value=2.5e+02 Score=23.21 Aligned_cols=137 Identities=12% Similarity=0.138 Sum_probs=70.4
Q ss_pred CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhcCCCCceEE-EEEeCCCCCCccC------CCh-h
Q 029062 32 DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVL-VQVNTSGEESKSG------IDP-S 103 (199)
Q Consensus 32 ~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~g~~~i~Vl-lqIntg~e~~R~G------v~~-~ 103 (199)
+...|=||..-..-++.+.+.....-.+|..-..+.++...+.+.+.+. .+.++ |-+=|+ ++..+ -++ +
T Consensus 82 DlKl~DIpnTv~~av~~~a~lGaD~vTVHa~~G~~~m~aa~e~a~~~~~-~~~llaVtvLTS--~s~~~l~~l~~~~~~e 158 (303)
T 3ru6_A 82 DLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSK-RPLVLAVSALTS--FDEENFFSIYRQKIEE 158 (303)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHTTSSS-CCEEEEECSCTT--CCHHHHHHHHSSCHHH
T ss_pred EeeeccCchhHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhcCC-CceEEEEEEecC--CCHHHHHHHHcCCHHH
Confidence 5666667754333444455322122235666667777777777766553 32222 333355 22111 122 3
Q ss_pred hHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCCCEEEecCC------------cCHH
Q 029062 104 SCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS------------GDFE 171 (199)
Q Consensus 104 ~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms------------~d~~ 171 (199)
.+..+++... .. + +.|+-+- + .+ . ..+++..|.. ...++-|.- .+..
T Consensus 159 ~V~~lA~~a~-~~-G--~dGvV~s-~---~E----~-------~~IR~~~~~~--fl~VTPGIr~qG~~~~DQ~Rv~t~~ 217 (303)
T 3ru6_A 159 AVINFSKISY-EN-G--LDGMVCS-V---FE----S-------KKIKEHTSSN--FLTLTPGIRPFGETNDDQKRVANLA 217 (303)
T ss_dssp HHHHHHHHHH-HT-T--CSEEECC-T---TT----H-------HHHHHHSCTT--SEEEECCCCTTC--------CCSHH
T ss_pred HHHHHHHHHH-Hc-C--CCEEEEC-H---HH----H-------HHHHHhCCCc--cEEECCCcCcccCCcccccccCCHH
Confidence 3444555444 32 3 4566541 1 11 1 1233333332 234455443 1566
Q ss_pred HHHHcCCCEEecCccccCCCc
Q 029062 172 QAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 172 ~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
.+++.|++.+=+|++||+..+
T Consensus 218 ~a~~aGAd~iVvGr~I~~a~d 238 (303)
T 3ru6_A 218 MARENLSDYIVVGRPIYKNEN 238 (303)
T ss_dssp HHHHTTCSEEEECHHHHTSSC
T ss_pred HHHHcCCCEEEEChHHhCCCC
Confidence 778999999999999999654
No 72
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=27.30 E-value=1.4e+02 Score=23.53 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=40.1
Q ss_pred cCCcHHHHHHhh-cCCCCceeeee-cccchHHHHhHhccCCCccE-EEecCcHHHHHHHHHHHHhcCC
Q 029062 16 SLIKLLRFIDKY-NLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGR 80 (199)
Q Consensus 16 ~~n~~qE~~~k~-~~~~~i~~h~I-G~lq~~ki~~l~~~~~~~~~-i~sVDs~~~a~~l~~~a~~~g~ 80 (199)
|.++++.+.++. .+...+.+..+ +.+....+..++ ..+++ +.+.|+.+.-..+++.|.+.++
T Consensus 83 G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~---~~~DvVi~~~d~~~~~~~l~~~~~~~~~ 147 (249)
T 1jw9_B 83 GQPKVESARDALTRINPHIAITPVNALLDDAELAALI---AEHDLVLDCTDNVAVRNQLNAGCFAAKV 147 (249)
T ss_dssp TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH---HTSSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHH---hCCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 457888887777 54334444443 233334455565 33665 4568999988899999988875
No 73
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=27.18 E-value=1.2e+02 Score=25.81 Aligned_cols=109 Identities=8% Similarity=0.028 Sum_probs=56.4
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCCC--ccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCCChHHHHHHHHHHHHHH
Q 029062 72 DKAVSNLGRKPLKVLVQVNTSGEES--KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEV 149 (199)
Q Consensus 72 ~~~a~~~g~~~i~VllqIntg~e~~--R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~~~~~~f~~l~~~~~~l 149 (199)
.+..+..|. . +|.++++.....+ ..|.+.++..++++.+. +. ++.+.-+ +.+.- ..... .. -.++...+
T Consensus 224 ~aVr~avg~-~-~v~vrls~~~~~~~~~~~~~~~~~~~la~~le-~~-Gvd~i~v--~~~~~-~~~~~-~~-~~~~~~~i 294 (377)
T 2r14_A 224 DAVAEVFGP-E-RVGIRLTPFLELFGLTDDEPEAMAFYLAGELD-RR-GLAYLHF--NEPDW-IGGDI-TY-PEGFREQM 294 (377)
T ss_dssp HHHHHHHCG-G-GEEEEECTTCCCTTCCCSCHHHHHHHHHHHHH-HT-TCSEEEE--ECCC--------CC-CTTHHHHH
T ss_pred HHHHHHcCC-C-cEEEEeccccccCCCCCCCCHHHHHHHHHHHH-Hc-CCCEEEE--eCCcc-cCCCC-cc-hHHHHHHH
Confidence 333334454 4 7999998752111 23555678888998887 54 3444333 33210 00000 00 12334455
Q ss_pred HHHhCCCCCCCEEEecCCcC-HHHHHHcC-CCEEecCccccCCCc
Q 029062 150 CKALGMAEDQCELSMGMSGD-FEQAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 150 ~~~~g~~~~~~~lS~Gms~d-~~~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
++..+++ ...+.|.+++ ...+++.| ++.|-+|+.++.+-.
T Consensus 295 k~~~~iP---vi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~P~ 336 (377)
T 2r14_A 295 RQRFKGG---LIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPD 336 (377)
T ss_dssp HHHCCSE---EEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHCCCC---EEEECCCCHHHHHHHHHCCCceEEeecHHHHhCch
Confidence 5554432 2335555422 12335777 899999999988743
No 74
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=27.16 E-value=64 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=26.0
Q ss_pred CEEEecCCcC------------HHHHHHcCCCEEecCccccCCCc
Q 029062 160 CELSMGMSGD------------FEQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 160 ~~lS~Gms~d------------~~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
..+..|..+. ...+++.|++.+=+|++||+..+
T Consensus 179 i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d 223 (246)
T 2yyu_A 179 LAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAAD 223 (246)
T ss_dssp EEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTSSS
T ss_pred EEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCC
Confidence 4667777654 66778899999999999998544
No 75
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=26.32 E-value=3.2e+02 Score=23.76 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=53.8
Q ss_pred Cce-EEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCC--CC------C-----hHHHHHHHHHHHH
Q 029062 82 PLK-VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD--YT------S-----TPENFRTLLNCRA 147 (199)
Q Consensus 82 ~i~-VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~--~~------~-----~~~~f~~l~~~~~ 147 (199)
..+ |++++..+ ++.+++.++++.+. +.. +.||-.+...- .+ . -...+..-.++..
T Consensus 296 ~~P~V~vKispd-------~~~ed~~~iA~~~~-~aG---aDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~ 364 (443)
T 1tv5_A 296 KKPLVFVKLAPD-------LNQEQKKEIADVLL-ETN---IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFIC 364 (443)
T ss_dssp SCCEEEEEECSC-------CCHHHHHHHHHHHH-HTT---CSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCC-------CCHHHHHHHHHHHH-HcC---CCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHH
Confidence 456 88887653 55668888888886 553 45554443211 00 0 0111222334555
Q ss_pred HHHHHhCCCCCCCEEEecCCcCHH---HHHHcCCCEEecCcccc
Q 029062 148 EVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIF 188 (199)
Q Consensus 148 ~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g~t~VR~Gs~if 188 (199)
.+++..+-. ++.+..|.=.+.+ .++..|++.|.+|+.++
T Consensus 365 ~v~~~v~~~--iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall 406 (443)
T 1tv5_A 365 EMYNYTNKQ--IPIIASGGIFSGLDALEKIEAGASVCQLYSCLV 406 (443)
T ss_dssp HHHHHTTTC--SCEEEESSCCSHHHHHHHHHTTEEEEEESHHHH
T ss_pred HHHHHcCCC--CcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 565543212 4566666556655 33678999999999944
No 76
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A
Probab=25.84 E-value=73 Score=25.23 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=26.0
Q ss_pred CEEEecCCcC------------HHHHHHcCCCEEecCccccCCCc
Q 029062 160 CELSMGMSGD------------FEQAIEMGSTSVRIGSTIFGPRE 192 (199)
Q Consensus 160 ~~lS~Gms~d------------~~~a~~~g~t~VR~Gs~ifgd~~ 192 (199)
..+..|..+. ...+++.|++.+=+|++||+..+
T Consensus 185 i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d 229 (245)
T 1eix_A 185 KLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVD 229 (245)
T ss_dssp EEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred EEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCC
Confidence 4667776654 66788999999999999998543
No 77
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=25.82 E-value=90 Score=28.35 Aligned_cols=110 Identities=5% Similarity=0.024 Sum_probs=60.7
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEe--eCCCCC----CChHHHHHHHHHH
Q 029062 72 DKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT--IGMPDY----TSTPENFRTLLNC 145 (199)
Q Consensus 72 ~~~a~~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt--~~~~~~----~~~~~~f~~l~~~ 145 (199)
.+..+..|. ..+|.++++..+ ....|.+++++.++++.+. +. ++.+..+.. +.+..+ ...... +.++
T Consensus 199 ~avr~~vG~-~~~v~vrls~~~-~~~~g~~~~~~~~~a~~l~-~~-g~d~i~v~~~~~~~~~~~~~~~~~~~~---~~~~ 271 (671)
T 1ps9_A 199 RAVRERVGN-DFIIIYRLSMLD-LVEDGGTFAETVELAQAIE-AA-GATIINTGIGWHEARIPTIATPVPRGA---FSWV 271 (671)
T ss_dssp HHHHHHHCS-SSEEEEEEEEEC-CSTTCCCHHHHHHHHHHHH-HH-TCSEEEEEECBTTCSSCSSSTTSCTTT---THHH
T ss_pred HHHHHHcCC-CceEEEEECccc-cCCCCCCHHHHHHHHHHHH-hc-CCCEEEcCCCccccccccccccCCcch---HHHH
Confidence 333344565 678888888642 3346888888999998886 53 344433321 111100 000001 1233
Q ss_pred HHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCc
Q 029062 146 RAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 146 ~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
.+.+++... .+.+..|.-.+.+ .+++.| ++.|-+|+.++.+.+
T Consensus 272 ~~~i~~~~~----iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~ 318 (671)
T 1ps9_A 272 TRKLKGHVS----LPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAE 318 (671)
T ss_dssp HHHHTTSCS----SCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTT
T ss_pred HHHHHHhcC----ceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcH
Confidence 445554433 3455555534433 346777 899999999998743
No 78
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.12 E-value=31 Score=19.73 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.6
Q ss_pred hhhHHHHHHHhccCCcHHHHHHh
Q 029062 4 VTVALVKITYKKSLIKLLRFIDK 26 (199)
Q Consensus 4 ~~~~~~~~~~~~~~n~~qE~~~k 26 (199)
.|++-|++-|.+.+++++++.+-
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999988653
No 79
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=25.04 E-value=3e+02 Score=23.00 Aligned_cols=106 Identities=11% Similarity=0.153 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCCC---ccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC---CCCChHHHHHHHHH
Q 029062 71 LDKAVSNLGRKPLKVLVQVNTSGEES---KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DYTSTPENFRTLLN 144 (199)
Q Consensus 71 l~~~a~~~g~~~i~VllqIntg~e~~---R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~---~~~~~~~~f~~l~~ 144 (199)
+.+..+..|. . +|.++++.+...+ ..|.+.+++.++++.+. +. ++.+..+. .+. ..... .+
T Consensus 218 v~avr~~vg~-~-~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~-~~-G~d~i~v~--~~~~~~~~~~~-------~~ 284 (364)
T 1vyr_A 218 VDAVCNEWSA-D-RIGIRVSPIGTFQNVDNGPNEEADALYLIEELA-KR-GIAYLHMS--ETDLAGGKPYS-------EA 284 (364)
T ss_dssp HHHHHHHSCG-G-GEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHH-HT-TCSEEEEE--CCBTTBCCCCC-------HH
T ss_pred HHHHHHhcCC-C-cEEEEEccccccccccCCCCCHHHHHHHHHHHH-Hh-CCCEEEEe--cCcccCCCccc-------HH
Confidence 3444444554 4 7999998763212 22445677888888887 54 34443332 211 01111 12
Q ss_pred HHHHHHHHhCCCCCCCEEEecCCcC-HHHHHHcC-CCEEecCccccCCCc
Q 029062 145 CRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 145 ~~~~l~~~~g~~~~~~~lS~Gms~d-~~~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
+...+++...++ ...+.|.|+. ...+++.| ++.|-+|+.++.+-.
T Consensus 285 ~~~~v~~~~~iP---vi~~Ggit~~~a~~~l~~g~aD~V~~gR~~l~~P~ 331 (364)
T 1vyr_A 285 FRQKVRERFHGV---IIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPD 331 (364)
T ss_dssp HHHHHHHHCCSE---EEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHHHCCCC---EEEECCcCHHHHHHHHHCCCccEEEECHHHHhChh
Confidence 344555553332 2334445322 22336777 899999999988743
No 80
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=23.21 E-value=1.4e+02 Score=24.52 Aligned_cols=37 Identities=11% Similarity=0.365 Sum_probs=28.2
Q ss_pred ceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC
Q 029062 83 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 130 (199)
Q Consensus 83 i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~ 130 (199)
.+|.|..|+| .+++.+++-.+. .|.+.+.|+-|..+.
T Consensus 4 ~~vIiDtD~G---------iDDa~Al~~al~--~p~i~l~gIt~v~GN 40 (313)
T 1q8f_A 4 RKIILDCDPG---------HDDAIAIMMAAK--HPAIDLLGITIVAGN 40 (313)
T ss_dssp EEEEEEECCC---------HHHHHHHHHHHH--CTTEEEEEEEECSSS
T ss_pred ceEEEECCCC---------hHHHHHHHHHHh--CCCCEEEEEEEccCC
Confidence 4677777764 578888886664 689999999887765
No 81
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=23.20 E-value=1.9e+02 Score=23.40 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHHHHHHcCCCE
Q 029062 139 FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTS 180 (199)
Q Consensus 139 f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~~a~~~g~t~ 180 (199)
...+.++.+.|+++ |+...+..+-.|..-|.+.+.+.|++.
T Consensus 197 ~~~~~~~i~~L~~~-g~~~~i~vivGG~~~~~~~a~~iGad~ 237 (262)
T 1xrs_B 197 IQNMTHLIELLEAE-GLRDRFVLLCGGPRINNEIAKELGYDA 237 (262)
T ss_dssp HHHHHHHHHHHHHT-TCGGGSEEEEECTTCCHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHhc-CCCCCCEEEEECCcCCHHHHHHcCCeE
Confidence 45567777888776 764324556667666776776667653
No 82
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=22.95 E-value=3.1e+02 Score=22.56 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=31.1
Q ss_pred cCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCC
Q 029062 78 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD 131 (199)
Q Consensus 78 ~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~ 131 (199)
+|. ..+|.|..|+| .+++.+++-.+. .|.+++.|+-|..+..
T Consensus 10 ~~~-~~~viiD~D~G---------iDDa~AL~~al~--~p~i~l~gIttv~GN~ 51 (322)
T 1yoe_A 10 HGS-ALPILLDCDPG---------HDDAIAIVLALA--SPELDVKAITSSAGNQ 51 (322)
T ss_dssp -CC-CEEEEEEECCS---------HHHHHHHHHHHT--CTTEEEEEEEECSSSS
T ss_pred cCC-CceEEEECCCC---------HHHHHHHHHHHh--CCCCEEEEEEEcCCCC
Confidence 454 66788888876 367888776664 6899999998887653
No 83
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=22.12 E-value=3.1e+02 Score=23.40 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=59.8
Q ss_pred HHHHHHHHHHH-HhcCCCCceEEEEEeCCCCCC--ccCCChhhHHHHHHHHHhcCC---CeeEEEEEeeCCC-CC---CC
Q 029062 65 EKIANHLDKAV-SNLGRKPLKVLVQVNTSGEES--KSGIDPSSCLGIVEHVRLRCP---NLEFSGLMTIGMP-DY---TS 134 (199)
Q Consensus 65 ~~~a~~l~~~a-~~~g~~~i~VllqIntg~e~~--R~Gv~~~~~~~l~~~i~~~~~---~L~l~GLmt~~~~-~~---~~ 134 (199)
.+.+.++-++. +..|. . +|.++++.+...+ ..|.+.++..++++.+. +.. +-.+..|..+.+. +. .+
T Consensus 221 ~rf~~Eiv~aVr~avg~-~-~V~vRls~~~~~~g~~~~~~~~~~~~la~~le-~~G~~gg~~vd~i~v~~~~~~~~~~~~ 297 (402)
T 2hsa_B 221 CKFITQVVQAVVSAIGA-D-RVGVRVSPAIDHLDAMDSNPLSLGLAVVERLN-KIQLHSGSKLAYLHVTQPRYVAYGQTE 297 (402)
T ss_dssp HHHHHHHHHHHHHHHCG-G-GEEEEECSSCCSTTCCCSCHHHHHHHHHHHHH-HHHHHHTSCCSEEEEECCCCCTTTTSS
T ss_pred hHHHHHHHHHHHHHhCC-C-cEEEEeccccccCCCCCCCCHHHHHHHHHHHH-hcCCccCCceEEEEEecCccccccCCc
Confidence 34444433333 34453 3 7999998763211 12344467788888876 432 0012223333332 11 11
Q ss_pred h---HHHHHHHHHHHHHHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCCc
Q 029062 135 T---PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPRE 192 (199)
Q Consensus 135 ~---~~~f~~l~~~~~~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~~ 192 (199)
. ..... -.++...+++..+++ ...+.|. +.+ .+++.| ++.|-+|..++.+-.
T Consensus 298 ~~~~~~~~~-~~~~~~~vk~~~~iP---vi~~G~i--~~~~a~~~l~~g~aD~V~igR~~l~dP~ 356 (402)
T 2hsa_B 298 AGRLGSEEE-EARLMRTLRNAYQGT---FICSGGY--TRELGIEAVAQGDADLVSYGRLFISNPD 356 (402)
T ss_dssp STTTTHHHH-HHHHHHHHHHHCSSC---EEEESSC--CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred cccccCCcc-hHHHHHHHHHHCCCC---EEEeCCC--CHHHHHHHHHCCCCceeeecHHHHhCch
Confidence 0 00111 234556677664442 2334444 444 335676 899999999988743
No 84
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.59 E-value=72 Score=20.05 Aligned_cols=27 Identities=7% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCccCCChhhHHHHHHHHHhcCCCeeEE
Q 029062 95 ESKSGIDPSSCLGIVEHVRLRCPNLEFS 122 (199)
Q Consensus 95 ~~R~Gv~~~~~~~l~~~i~~~~~~L~l~ 122 (199)
..+.||+.+++..+++.+. +-.-+++.
T Consensus 32 a~kygV~kdeV~~~LrrLe-~KGLI~le 58 (59)
T 2xvc_A 32 SKVYGVEKQEVVKLLEALK-NKGLIAVE 58 (59)
T ss_dssp HHHHCCCHHHHHHHHHHHH-HTTSEEEE
T ss_pred HHHhCCCHHHHHHHHHHHH-HCCCeecc
Confidence 4789999999999999887 54445554
No 85
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=20.73 E-value=3.7e+02 Score=22.45 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=56.3
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCCC--ccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCC-CCCChHHHHHHHHHHHH
Q 029062 71 LDKAVSNLGRKPLKVLVQVNTSGEES--KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTSTPENFRTLLNCRA 147 (199)
Q Consensus 71 l~~~a~~~g~~~i~VllqIntg~e~~--R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~-~~~~~~~~f~~l~~~~~ 147 (199)
+.+..+..|. . +|.++++..+..+ ..|.+.+++.++++.+. +. ++.+..+ +.+. +..+.. . .++..
T Consensus 218 v~avr~~vg~-~-pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~-~~-G~d~i~v--~~~~~~~~~~~-~----~~~~~ 286 (365)
T 2gou_A 218 VAALVDAIGA-E-RVGVRLAPLTTLNGTVDADPILTYTAAAALLN-KH-RIVYLHI--AEVDWDDAPDT-P----VSFKR 286 (365)
T ss_dssp HHHHHHHHCG-G-GEEEEECSSCCTTSCCCSSHHHHHHHHHHHHH-HT-TCSEEEE--ECCBTTBCCCC-C----HHHHH
T ss_pred HHHHHHHcCC-C-cEEEEEccccccCCCCCCCCHHHHHHHHHHHH-Hc-CCCEEEE--eCCCcCCCCCc-c----HHHHH
Confidence 3333344454 4 7999998742111 13455678888898887 54 3443333 2221 101100 0 12344
Q ss_pred HHHHHhCCCCCCCEEEecCCcCHH---HHHHcC-CCEEecCccccCCC
Q 029062 148 EVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPR 191 (199)
Q Consensus 148 ~l~~~~g~~~~~~~lS~Gms~d~~---~a~~~g-~t~VR~Gs~ifgd~ 191 (199)
.+++..+++ ...+.|. +.+ .+++.| ++.|-+|+.++.+-
T Consensus 287 ~i~~~~~iP---vi~~Ggi--~~~~a~~~l~~g~aD~V~igR~~i~~P 329 (365)
T 2gou_A 287 ALREAYQGV---LIYAGRY--NAEKAEQAINDGLADMIGFGRPFIANP 329 (365)
T ss_dssp HHHHHCCSE---EEEESSC--CHHHHHHHHHTTSCSEEECCHHHHHCT
T ss_pred HHHHHCCCc---EEEeCCC--CHHHHHHHHHCCCcceehhcHHHHhCc
Confidence 555554432 2335455 444 336777 89999999998874
No 86
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=20.28 E-value=3.3e+02 Score=22.13 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=27.0
Q ss_pred eEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCC
Q 029062 84 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD 131 (199)
Q Consensus 84 ~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~ 131 (199)
+|+|..|+| .+++.+++-.+ ..|.+.+.|+-|..+..
T Consensus 3 kvIiDtD~G---------iDDa~Al~~al--~~p~i~l~gIt~v~GN~ 39 (312)
T 2c40_A 3 KVYFNHDGG---------VDDLVSLFLLL--QMDNVELTGVSVIPADC 39 (312)
T ss_dssp EEEEEECCS---------HHHHHHHHHHT--TCTTEEEEEEEECSSSS
T ss_pred EEEEECCCC---------hHHHHHHHHHH--hCCCCEEEEEEEecCCC
Confidence 466666653 57888887555 47899999998887753
Done!